Query 026381
Match_columns 239
No_of_seqs 136 out of 1078
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k7j_A Protein YCIO, protein T 100.0 3.2E-56 1.1E-60 379.3 24.9 202 2-220 4-205 (206)
2 2eqa_A Hypothetical protein ST 100.0 1E-54 3.5E-59 395.1 21.6 207 1-225 3-210 (352)
3 1jcu_A Conserved protein MTH16 100.0 8.6E-55 3E-59 371.0 19.2 198 1-220 2-200 (208)
4 1hru_A YRDC gene product; prot 100.0 6.7E-51 2.3E-55 342.0 15.8 184 7-211 2-188 (188)
5 3vth_A Hydrogenase maturation 100.0 1.8E-43 6.1E-48 348.4 21.8 193 11-225 201-396 (761)
6 3ttc_A HYPF, transcriptional r 100.0 3.2E-41 1.1E-45 327.2 20.6 184 12-225 111-297 (657)
7 3l7v_A Putative uncharacterize 100.0 1.1E-42 3.8E-47 308.6 7.7 201 11-231 42-276 (295)
8 4g9i_A Hydrogenase maturation 100.0 2.9E-34 1E-38 283.7 16.4 194 12-225 200-396 (772)
9 3ven_A O-carbamoyltransferase 96.3 0.029 1E-06 53.7 11.3 151 14-191 398-568 (576)
10 2bh1_X General secretion pathw 39.4 92 0.0031 21.4 7.1 55 20-78 20-77 (96)
11 1tks_A 3,4-dihydroxy-2-butanon 29.4 1.1E+02 0.0038 25.1 6.0 61 12-77 5-71 (204)
12 3p3d_A Nucleoporin 53; structu 28.9 34 0.0012 26.2 2.6 40 14-57 71-110 (132)
13 1snn_A DHBP synthase, 3,4-dihy 28.7 1.1E+02 0.0038 25.4 6.0 62 14-82 3-70 (227)
14 2fca_A TRNA (guanine-N(7)-)-me 28.6 60 0.002 25.7 4.3 22 12-33 133-154 (213)
15 1g57_A DHBP synthase, 3,4-dihy 26.6 1.2E+02 0.0042 25.0 5.9 61 12-77 13-79 (217)
16 3mio_A DHBP synthase, 3,4-dihy 25.1 1.5E+02 0.005 24.3 6.0 60 13-77 5-70 (206)
17 1iuq_A Glycerol-3-phosphate ac 23.7 64 0.0022 28.9 3.8 49 11-59 208-265 (367)
18 1dcu_A Fructose-1,6-bisphospha 22.1 50 0.0017 29.4 2.8 59 14-77 273-353 (357)
19 1hq0_A CNF1, cytotoxic necroti 21.3 25 0.00087 30.5 0.7 31 127-163 116-146 (295)
No 1
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=100.00 E-value=3.2e-56 Score=379.32 Aligned_cols=202 Identities=32% Similarity=0.614 Sum_probs=185.7
Q ss_pred eEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCC
Q 026381 2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFP 81 (239)
Q Consensus 2 ~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p 81 (239)
++++|++|++.+.+++|+++|++||+|+|||||+|||+|++.|++|++|||++|+|+.+|||+++|+|++++.+|++ ++
T Consensus 4 ~~~~~~~~~~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~-~~ 82 (206)
T 1k7j_A 4 FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF-VD 82 (206)
T ss_dssp EEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBC-CC
T ss_pred eEecCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHhc-CC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999995 44
Q ss_pred CCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCC
Q 026381 82 RGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKW 161 (239)
Q Consensus 82 ~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~ 161 (239)
+..++++++|||||+|+|+++++.+|++++ .++.+|||||+|+||++++|++++|.||++||||+
T Consensus 83 -------~~~~~ll~~~~PGp~T~il~~~~~~p~~~~--------~~~~~tvgvR~P~~p~~~~Ll~~~g~Pl~~TSAN~ 147 (206)
T 1k7j_A 83 -------NVAFRLMKNNTPGNYTFILKGTKEVPRRLL--------QEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLML 147 (206)
T ss_dssp -------HHHHHHHHTSCSSSEEEEEEBCTTSCGGGS--------CTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBC
T ss_pred -------HHHHHHHHcCCCCCeEEEEECCCCCCHHHc--------CCCCCeEEEEecCCHHHHHHHHHhCCceEECCccc
Confidence 357899999999999999999999998542 24678999999999999999999999999999999
Q ss_pred CCCCCCCCCHhHHHHHcCCCcccEEEeCCCCCCCCceEEEEECCCcEEEecCCCCCccc
Q 026381 162 LKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYW 220 (239)
Q Consensus 162 sg~~~~~~~~~~~~~~~~~~~vd~ild~g~~~~~~STIVdl~~~~~~ilR~G~~~~~~~ 220 (239)
||++.++.+.+++.+.|+. .+|+|+|+|.....+|||||++++.++|+|+|.++.+.+
T Consensus 148 sG~~~p~~~~~~~~~~l~~-~vd~ild~g~~~~~~STVvd~~~~~~~ilR~G~g~~~~~ 205 (206)
T 1k7j_A 148 PGSEFTESDPEEIKDRLEK-QVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPF 205 (206)
T ss_dssp TTCSSBCCCHHHHHHHHTT-TCSEEEECCCCCSCCCEEEECGGGCCEEEECCSSCSGGG
T ss_pred CCCCCCCCCHHHHHHHhCC-CCcEEEeCCCCCCCCCeEEEeeCCcEEEEEeCCCChHHc
Confidence 9976556899999999974 899999999755689999999988999999999987554
No 2
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=100.00 E-value=1e-54 Score=395.07 Aligned_cols=207 Identities=19% Similarity=0.321 Sum_probs=188.0
Q ss_pred CeEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccC
Q 026381 1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF 80 (239)
Q Consensus 1 ~~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~ 80 (239)
+++.+|++||+.+.+++|+++|++||+|+|||||+|||+|+++|++||+|||++|+|+.+|||+++|+|++++.+|+..+
T Consensus 3 ~~~~i~~~~~~~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~~~i 82 (352)
T 2eqa_A 3 QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDI 82 (352)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESC
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHHHhC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999545
Q ss_pred CCCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccC
Q 026381 81 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK 160 (239)
Q Consensus 81 p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN 160 (239)
+ +.+++++++|||||+|||+|+++.+|++++ ++.+|||||||+||++++|++.+|.||++||||
T Consensus 83 ~-------~~~~~Ll~~fwPGPlTlIlp~~~~lp~~v~---------~g~~tvgvRvP~~p~~~~Ll~~~g~PL~atSAN 146 (352)
T 2eqa_A 83 P-------DKVLEIAQIVWPGPLTFVLKKTERVPKEVT---------AGLDTVAVRMPAHPIALQLIRESGVPIAAPSAN 146 (352)
T ss_dssp C-------HHHHHHHHHHCSSSEEEEEEECTTSCHHHH---------TTCSEEEEECCCCHHHHHHHHHHTSCEEECBSS
T ss_pred C-------HHHHHHHHhCCCCCEEEEEECCCcCCHhHc---------CCCCeEEEEccCcHHHHHHHHHhCCcEEECccc
Confidence 4 368899999999999999999999999853 577899999999999999999999999999999
Q ss_pred CCCCCCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381 161 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 225 (239)
Q Consensus 161 ~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~ 225 (239)
+||++ +.++.+++.+.|+. .+|+|+|+|. ..+.+|||||++++.++|||+|.++.+++.++..
T Consensus 147 ~SG~p-~~t~~~~v~~~l~~-~vd~iLdgg~~~~g~~STVvd~~~~~~~iLR~G~i~~e~i~~~l~ 210 (352)
T 2eqa_A 147 LATRP-SPTKAEDVIVDLNG-RVDVIIDGGHTFFGVESTIINVTVEPPVLLRPGPFTIEELKKLFG 210 (352)
T ss_dssp CTTSC-CCCSHHHHHHHHTT-TSSEEEECCCCSSCSCCEEEECSCCC-EEEECCSSCHHHHHHHCT
T ss_pred cCCCC-CCCCHHHHHHHhcC-cCCEEecCCccCCCCCCeeEECCCCceEEEcCCCCCHHHHHHHhC
Confidence 99886 56888888888884 8999999998 4688999999999899999999998766654443
No 3
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=100.00 E-value=8.6e-55 Score=371.01 Aligned_cols=198 Identities=28% Similarity=0.490 Sum_probs=183.3
Q ss_pred CeEEeCCCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccC
Q 026381 1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGF 80 (239)
Q Consensus 1 ~~~~~~~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~ 80 (239)
||+.+|++|++.+.+++|+++|++||+|+|||||+|||+|+++|++|++|||++|+|+.+|||+++|+|++++.+|++ +
T Consensus 2 ~~~~~~~~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~~~-~ 80 (208)
T 1jcu_A 2 LIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSR-P 80 (208)
T ss_dssp CSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEE-C
T ss_pred eEEEecCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhc-C
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred CCCCCCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccC
Q 026381 81 PRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVK 160 (239)
Q Consensus 81 p~~~~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN 160 (239)
+ +..++++++|||||+|+|+++++.+|+++. ++.+|||||+|+||++++|++++ ||++||||
T Consensus 81 ~-------~~~~~ll~~~wPgp~T~il~~~~~~p~~v~---------~~~~tvgvR~P~~p~~~~Ll~~~--Pl~~TSAN 142 (208)
T 1jcu_A 81 S-------GDAMELMERILPGPYTVVLERNELIPDVIT---------GGSSRVGIRVPDDEICRRIAARF--PVTATSAN 142 (208)
T ss_dssp C-------HHHHHHHHHSCSSSEEEEEEECSCCCHHHH---------TTTTEEEEECCSCHHHHHHHHHS--CEEEEECC
T ss_pred C-------HHHHHHHHhcCCCCeEEEEeCCccCCHhhc---------CCCCeEEEEeCCCHHHHHHHHHh--HHHccCcc
Confidence 4 357899999999999999999999999853 56789999999999999999999 99999999
Q ss_pred CCCCCCCCCCHhHHHHHcCCCcccEEEeCCC-CCCCCceEEEEECCCcEEEecCCCCCccc
Q 026381 161 WLKDNEWMVDPVVIADTYGPEGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGPKLYW 220 (239)
Q Consensus 161 ~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~-~~~~~STIVdl~~~~~~ilR~G~~~~~~~ 220 (239)
+||++ ++.+.+++.+.| . .+|+|+|+|. ..+.+|||||++++.++|+|+|.++.+++
T Consensus 143 ~sG~p-~~~~~~~~~~~l-~-~vd~ild~g~~~~~~~STVvd~~~~~~~ilR~G~~~~~~i 200 (208)
T 1jcu_A 143 ISGKP-PSPRLEEIVRDL-D-AVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPLDPV 200 (208)
T ss_dssp SSSCC-SCSCHHHHHHHS-S-SSEECCSSCCCSCSCCCEEECCCSSSCCEEECCCSSCCCC
T ss_pred cCCCC-CCCCHHHHHHHh-C-cCCEEEeCCCccCCCCCEEEEeeCCcEEEEecCCCCHHHH
Confidence 99886 568999999988 5 8999999995 56789999999988999999999997554
No 4
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=100.00 E-value=6.7e-51 Score=342.00 Aligned_cols=184 Identities=21% Similarity=0.328 Sum_probs=165.8
Q ss_pred CCCCChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhcc--CCCCC
Q 026381 7 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTG--FPRGD 84 (239)
Q Consensus 7 ~~~~~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~--~p~~~ 84 (239)
+.+++.+.+++|+++|++||+|+|||||+|||+|++.|++|++|||++|+|+.+|||++||+|++++.+|+.. ++
T Consensus 2 ~~~~~~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~--- 78 (188)
T 1hru_A 2 NNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLT--- 78 (188)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCC---
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHHhhcCCC---
Confidence 4667888999999999999999999999999999999999999999999999999999999999999999862 33
Q ss_pred CCCchHHHHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCC
Q 026381 85 GQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKD 164 (239)
Q Consensus 85 ~~~~~~~~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~ 164 (239)
+..+++++++||||+|||+++++.+|+++. ++.++||||+|+||++++|++++|.||++||||+||+
T Consensus 79 ----~~~~~~~~~~~pgP~tlil~~~~~~p~~v~---------~~~~tvgvR~p~~p~~~~Ll~~~g~Pl~~TSaN~sG~ 145 (188)
T 1hru_A 79 ----DVQRETIFSRWPGPVTFVFPAPATTPRWLT---------GRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGL 145 (188)
T ss_dssp ----HHHHHHHHTTCSSSEEEEEECCTTSCHHHH---------TTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTS
T ss_pred ----HHHHHHHHhCCCCCEEEEEECCCCCCHhHc---------CCCCeEEEEcCCCHHHHHHHHHhCCeEEEccCCCCCC
Confidence 356789999999999999999999999853 4678899999999999999999999999999999988
Q ss_pred CCCCCCHhHHHHHcCCCcccEEEeCCCC-CCCCceEEEEECCCcEEEe
Q 026381 165 NEWMVDPVVIADTYGPEGLDFVVDGGVR-VAEPSTVVDMTGTYPKIIR 211 (239)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~vd~ild~g~~-~~~~STIVdl~~~~~~ilR 211 (239)
+ ++.+.+++.+.|+. .+ +|+|||.. .+.+|||||++++ +|+|
T Consensus 146 p-~~~~~~~~~~~l~~-~v-~ildgg~~~~~~~STIvd~~~~--~ilR 188 (188)
T 1hru_A 146 P-PCRTVDEVRAQFGA-AF-PVVPGETGGRLNPSEIRDALTG--ELFR 188 (188)
T ss_dssp C-CCCSHHHHHHHHCT-TS-CBCCCCCCSSCCCCEEEETTTS--SBCC
T ss_pred C-CCCCHHHHHHHhCC-CE-EEEeCCCCCCCCCCeEEECcCC--EEEC
Confidence 5 57899999999985 78 89999984 5789999999864 6766
No 5
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=100.00 E-value=1.8e-43 Score=348.36 Aligned_cols=193 Identities=17% Similarity=0.203 Sum_probs=175.3
Q ss_pred ChhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchH
Q 026381 11 DSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHAN 90 (239)
Q Consensus 11 ~~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~ 90 (239)
..+.+++|+++|++||||++||||+|||+|+++|++||+|||++|+|+ +|||+||++|++++.+|+. ++ +.
T Consensus 201 ~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp-~KPl~vmv~dl~~l~~~~~-v~-------~~ 271 (761)
T 3vth_A 201 FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYCI-VS-------PE 271 (761)
T ss_dssp CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-SSCCCEECSSHHHHHHHBC-CC-------HH
T ss_pred chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-CCCeEEEeCCHHHHHHHcc-CC-------HH
Confidence 456899999999999999999999999999999999999999999999 9999999999999999996 54 35
Q ss_pred HHHHHHhcCCCCeEEEeccCC-CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCC
Q 026381 91 IFRAVKHCLPGPYTFILTASK-EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMV 169 (239)
Q Consensus 91 ~~~l~~~~wPGplTlIl~~~~-~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~ 169 (239)
.++++++ ||||+| |+++++ .+|+++ .++.+|||||+|+||+++.|++.+|.||++||||+||++ ++.
T Consensus 272 ~~~ll~~-~pgPit-lL~~~~~~lp~~v---------~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p-~~~ 339 (761)
T 3vth_A 272 EERLLLS-QRRPIV-LLKKKGEKLAKGI---------ADDLDTLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEEP-ICK 339 (761)
T ss_dssp HHHHHHS-TTCCEE-EEEBCSSCCCTTS---------STTCSEEEEECCCSHHHHHHHHHCSSCEECEESSSTTSC-CCC
T ss_pred HHHHHhC-CCCCEE-EEECCCCCCCHhH---------cCCCCeEEEEecCCHHHHHHHHHcCCeEEEcCcccCCCC-CCC
Confidence 7789987 999999 577776 788874 357789999999999999999999999999999999875 678
Q ss_pred CHhHHHHHcCCCcccEEEeCCC--CCCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381 170 DPVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 225 (239)
Q Consensus 170 ~~~~~~~~~~~~~vd~ild~g~--~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~ 225 (239)
+.+++.+.+.+ .+|+|||+|. ..+.+|||||+++++++|||+|+|+.|.++.+..
T Consensus 340 ~~~e~~~~l~~-~vD~iLd~~r~i~~~~~STVvd~~~~~~~iLR~grG~~P~~~~l~~ 396 (761)
T 3vth_A 340 DNEEALEKLKD-IADVFLLNNRDIVNRIDDSVTSFNAGAERIIRRARGYAPQPILLKK 396 (761)
T ss_dssp SHHHHHHHTTT-TCSEEEEESSCCSSCCCCCEECEETTEECCSBCCTTTTTCCEECSS
T ss_pred CHHHHHHHccC-cCCEEEECCCCccCCCCCeEEEEECCcEEEEecCCCCCCCccccCC
Confidence 89999898885 8999999874 5789999999999999999999999999999864
No 6
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=100.00 E-value=3.2e-41 Score=327.24 Aligned_cols=184 Identities=17% Similarity=0.194 Sum_probs=165.4
Q ss_pred hhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHH
Q 026381 12 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI 91 (239)
Q Consensus 12 ~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~ 91 (239)
.+.+++|+++|++||||++||||+|||+|++.|++||+|||++|+|+ +|||+||++|+++ ++ +..
T Consensus 111 ~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp-~KPlavm~~dl~~-------v~-------~~~ 175 (657)
T 3ttc_A 111 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVMLPVADG-------LP-------DAA 175 (657)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS-SSCCCEECSCCTT-------SC-------HHH
T ss_pred hHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC-CCCEEEEECChHH-------CC-------HHH
Confidence 46899999999999999999999999999999999999999999998 8999999999982 22 246
Q ss_pred HHHHHhcCCCCeEEEeccCC-CCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCCCCCCCCC
Q 026381 92 FRAVKHCLPGPYTFILTASK-EVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVD 170 (239)
Q Consensus 92 ~~l~~~~wPGplTlIl~~~~-~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg~~~~~~~ 170 (239)
+++++. ||||+|+|+++++ .+|+++ .++.+|||||+|+||+++.|++.+|.||++||||+||++ ++.+
T Consensus 176 ~~ll~~-~pgPiTli~~~~~~~lp~~v---------~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p-~~~~ 244 (657)
T 3ttc_A 176 RQLLTT-PAAPIVLVDKKYVPELCDDI---------APGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKP-PAIS 244 (657)
T ss_dssp HHHHTS-TTCCEEEEEGGGCTTSCTTS---------STTCSEEEEECCCSHHHHHHHHHHCSCEEEEECCCTTSC-CCCS
T ss_pred HHHHhc-CCCCEEEEEeCCcCCCCHHH---------CCCCCceEEEeCCCHHHHHHHHHcCCCeEECCcccCCCC-CCCC
Confidence 788877 9999999999876 588875 257789999999999999999999999999999999875 6788
Q ss_pred HhHHHHHcCCCcccEEEeCCC--CCCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381 171 PVVIADTYGPEGLDFVVDGGV--RVAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 225 (239)
Q Consensus 171 ~~~~~~~~~~~~vd~ild~g~--~~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~ 225 (239)
.+++.+.+.+ .+|+|||+|. ..+.+||||| + +++|||+|+++.|.++.+..
T Consensus 245 ~~e~~~~l~~-~vD~iLd~gr~i~~~~dsSVV~--~-~~~ilRrgrG~~p~~~~l~~ 297 (657)
T 3ttc_A 245 NEQALEDLQG-IADGFLIHNRDIVQRMDDSVVR--E-SGEMLRRSRGYVPDALALPP 297 (657)
T ss_dssp HHHHHHHHTT-TCSEEEEESSCCCSCCCCCEEE--T-TCCEEECCTTTTTCCEECCT
T ss_pred HHHHHHHhcC-CCeEEEECCCcccCCCCCcEEE--C-CCeEEEcCCCCCCCccccCc
Confidence 9999999985 8999999985 3689999999 5 89999999999999999874
No 7
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-42 Score=308.57 Aligned_cols=201 Identities=15% Similarity=0.146 Sum_probs=160.6
Q ss_pred ChhhHHHHHHHHH-CCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCch
Q 026381 11 DSWKLEPVVELLK-EGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHA 89 (239)
Q Consensus 11 ~~~~l~~a~~~L~-~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~ 89 (239)
+.+.+++|+++|+ +||||+|||||+|||+| +|++||+|||++|+|+.+|||++||+|++++.+|+. ++ +
T Consensus 42 ~~~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~~-v~-------~ 111 (295)
T 3l7v_A 42 DGNLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQ-LT-------P 111 (295)
T ss_dssp CSSCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHBC-CC-------H
T ss_pred ChHHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHhc-CC-------H
Confidence 3457899999999 99999999999999999 899999999999999999999999999999999996 44 3
Q ss_pred HHHHHHHhcCCCCeEE--EeccCC----CCC------hhhhccCccccccCCCCe----EEEEeCChHHHHHHHHHcCCc
Q 026381 90 NIFRAVKHCLPGPYTF--ILTASK----EVP------KKCVRYGTTTAKYSLRKH----VGVRIPNDAICQAILQKMDAP 153 (239)
Q Consensus 90 ~~~~l~~~~wPGplTl--Il~~~~----~lp------~~l~~~g~~t~~~~~~~t----igvRiP~~~~~~~Ll~~~g~P 153 (239)
..++++++|||||+|+ |+|+++ .+| ..+ ..++.+| ||||+|+||++++|++++|.|
T Consensus 112 ~~~~Ll~~~wPGPiTlT~ILp~k~~a~~~lp~~~~~~~~~--------v~~g~~t~~~~VGVRvP~~pl~~~Ll~~~g~P 183 (295)
T 3l7v_A 112 EIDAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREEL--------MTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRM 183 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEBCHHHHHHHHHTCSCTHHH--------HSCTTSEEEEEESSCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcCCCCceeeEEEECCccccccCCcccccchhh--------ccCCCCCcceeeEEEeCCCHHHHHHHHHcCCC
Confidence 5789999999999975 999653 354 222 2357789 999999999999999999999
Q ss_pred EEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCCC--C---------CCCCceEEEEE---CCCcEEEec--CCCCC
Q 026381 154 LISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV--R---------VAEPSTVVDMT---GTYPKIIRQ--GKGPK 217 (239)
Q Consensus 154 L~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~--~---------~~~~STIVdl~---~~~~~ilR~--G~~~~ 217 (239)
|++||||+||++ ++.+.+++.+.|.+ .+|+|||+|. . ......|+... +++...+|. .+++.
T Consensus 184 LvaTSAN~SGep-~~~~~ee~~~~L~~-~vD~iLd~G~~~~~~~Psr~i~~r~ddsV~~~~~~~~g~~~~~rr~~~Rg~~ 261 (295)
T 3l7v_A 184 VYASSANPSGKG-NRGKVEGIGERIES-MVDLVIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPQQGADSRSVE 261 (295)
T ss_dssp CEEEECC------CTTCGGGSCHHHHH-HSSEEEECHHHHHHTCTTCCTTTSCCSCCEEECBCTTSCBCCCCCTTCCSCS
T ss_pred eEECCcccCCCC-CCCCHHHHHHHhcC-cCcEEEeCCCccCCCCCCcCcccCCCCeeEEEEEcCCCcEeeeeccCccccc
Confidence 999999999875 67888888888874 8999999874 1 12233344332 567778886 99999
Q ss_pred ccceeccc-cccccc
Q 026381 218 LYWMEEED-ANSTAI 231 (239)
Q Consensus 218 ~~~~~~~~-~~~~~~ 231 (239)
|.++.+.. ++..||
T Consensus 262 P~p~~~~~~~~~~~~ 276 (295)
T 3l7v_A 262 PCPVVIRKGLDIDKI 276 (295)
T ss_dssp SCCEEEECCTTHHHH
T ss_pred CceeeccccccHHHH
Confidence 99988864 344443
No 8
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=100.00 E-value=2.9e-34 Score=283.73 Aligned_cols=194 Identities=13% Similarity=0.154 Sum_probs=173.2
Q ss_pred hhhHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCCCCCCCchHH
Q 026381 12 SWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI 91 (239)
Q Consensus 12 ~~~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~~~~~~~~~ 91 (239)
...+++|+++|++|++|++||+|+|||+||++|++||+||++.|+|+ +|||+||++|++++.+|+. +. +..
T Consensus 200 ~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp-~kP~avm~~d~~~~~~~~~-~~-------~~e 270 (772)
T 4g9i_A 200 GDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP-QKPFAIMAKDIETVKSFAY-VS-------PEE 270 (772)
T ss_dssp THHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-SSCCEEECSSHHHHHHHSC-CC-------HHH
T ss_pred hHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-CCCcEEEeCCHHHHHHHhc-cC-------chh
Confidence 35899999999999999999999999999999999999999999998 7999999999999999996 32 356
Q ss_pred HHHHHhcCCCCeEEEeccCCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHHcCC-cEEecccCCCCCCCCCCC
Q 026381 92 FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDA-PLISTSVKWLKDNEWMVD 170 (239)
Q Consensus 92 ~~l~~~~wPGplTlIl~~~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~~g~-PL~~TSAN~sg~~~~~~~ 170 (239)
++++...|+.++++..+....+|+.+ .++.++||||+|++|+++.|++.+|. ||++||||+||++ .+.+
T Consensus 271 ~~~L~s~~~Pivll~~~~~~~l~~~v---------ap~~~~~Gv~lP~~pl~~lL~~~~~~~~lv~tSaN~sg~P-~~~~ 340 (772)
T 4g9i_A 271 EEELTSYRRPIITLRKKEPFPLPENL---------APGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANYPGMP-MVKD 340 (772)
T ss_dssp HHHHSSTTCCEEEEECCSSCCSCTTS---------CSSCSEEEEECCCSTHHHHHHHSSSSCCCCCEESSCTTSC-CBCS
T ss_pred hhhhccCCCCCEEEECCCCCCCChhH---------CCCCCeEEEEecCCHHHHHHHHhcCCCEEEECcCCCCCCC-CccC
Confidence 78888888778888887777788774 35678999999999999999999997 5799999999875 6889
Q ss_pred HhHHHHHcCCCcccEEEeCCCC--CCCCceEEEEECCCcEEEecCCCCCccceeccc
Q 026381 171 PVVIADTYGPEGLDFVVDGGVR--VAEPSTVVDMTGTYPKIIRQGKGPKLYWMEEED 225 (239)
Q Consensus 171 ~~~~~~~~~~~~vd~ild~g~~--~~~~STIVdl~~~~~~ilR~G~~~~~~~~~~~~ 225 (239)
.+++.+.+.. .+|++||+++. .....+||++.++.+.+||.++|+.|.++.+..
T Consensus 341 ~~~a~~~L~~-~~D~~L~h~R~I~~~~DDSvv~~~~~~~~~lRr~RG~~P~~~~~~~ 396 (772)
T 4g9i_A 341 NERAFEELKD-VADYFLLHNRKILNRADDSVIRFVDGKRAVIRRSRGFVPLPIEIPF 396 (772)
T ss_dssp HHHHHHHHTT-TCSBEEEESSCCCSCCCCCEECCCSSSCCBSCCCTTSTTCCEECSS
T ss_pred HHHHHHhhcC-cccEEEECCCCccCccCCceEEEECCeEEEEecCCCCCCCccccCC
Confidence 9999998885 89999999973 578889999999999999999999999998864
No 9
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=96.26 E-value=0.029 Score=53.70 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=103.0
Q ss_pred hHHHHHHHHHCCCeEEE-ecCceE--------EEEccCCChHHHHHHH-HHhCCCCCCCeEEEeCChHHHhhhhccCCCC
Q 026381 14 KLEPVVELLKEGAVGVV-PTDTLY--------AIVCDLKSHSAIERLR-RIKNVEPSKPLSILCRSLRDIDTYTTGFPRG 83 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~-PTdTvY--------gL~~~~~n~~Av~ri~-~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~~ 83 (239)
..+++++.|.+|+||.. -.-.=| .|.++|.+.+..+||. ++|+|..-.||+=.|- .|.+.+|-+ .+
T Consensus 398 ~~~~~A~~la~g~vvgw~qGr~EfGPRALG~RSILadP~~~~~~~~lN~~iK~RE~fRPfAP~vl-~e~a~~~f~-~~-- 473 (576)
T 3ven_A 398 LEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSML-RSVSDQVLE-VD-- 473 (576)
T ss_dssp HHHHHHHHHHTTCCEEEECSSCBCSSSCCSSEEEEEESSCSSHHHHHHHTTSCCCTTCCCCEEEE-HHHHHHHBS-SC--
T ss_pred HHHHHHHHHhCCCEEEEEecCccccccccccceeecCCCChHHHHHHHHHhcCCCccCCcChhhh-HHHHHHHcC-CC--
Confidence 46789999999999964 333334 4889999999999999 7999999999986654 477777754 21
Q ss_pred CCCCchHHHHHHHhcCCCCe-EEEecc----CCCCChhhhccCccccccCCCCeEEEEeCChHHHHHHHHH----cCCc-
Q 026381 84 DGQGHANIFRAVKHCLPGPY-TFILTA----SKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQK----MDAP- 153 (239)
Q Consensus 84 ~~~~~~~~~~l~~~~wPGpl-TlIl~~----~~~lp~~l~~~g~~t~~~~~~~tigvRiP~~~~~~~Ll~~----~g~P- 153 (239)
.|.|+ +++++. ++.+|.-..-.|.. .-.-|.=-.+|...+||++ +|.|
T Consensus 474 ---------------~~spyMl~~~~v~~~~r~~ipav~HvDgTa-------R~QtV~~~~np~~~~ll~~f~~~TG~pv 531 (576)
T 3ven_A 474 ---------------ADFPYMIMTTKVRAAYAERLPSVVHEDWST-------RPQTVTEASNPRYHRMLTELGDLVGDPV 531 (576)
T ss_dssp ---------------SCCCSSCSCEEBCGGGTTTCTTTSCTTSEE-------CCEEECTTTCHHHHHHHHHHHHHHSSCE
T ss_pred ---------------CCCCceeEeeecCHhHHhhCCcEEeccCCc-------cceEECCccCHHHHHHHHHHHHHhCCeE
Confidence 13332 333332 35677653222321 1133444457877787755 6666
Q ss_pred EEecccCCCCCCCCCCCHhHHHHHcCCCcccEEEeCCC
Q 026381 154 LISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGV 191 (239)
Q Consensus 154 L~~TSAN~sg~~~~~~~~~~~~~~~~~~~vd~ild~g~ 191 (239)
|+-||-|..|++ ...++.++.+.|....+|+.+=++.
T Consensus 532 llNTSfN~~GeP-iV~tp~dA~~~f~~~~lD~Lv~~~~ 568 (576)
T 3ven_A 532 CLNTSFNDRGEP-IVSSPADALLTFSRLPIDALAVGPY 568 (576)
T ss_dssp EEEEESSCTTSC-CCCSHHHHHHHHHHTTCSEEEETTE
T ss_pred EEECCCCCCCCC-CCCCHHHHHHHHHhCCCCEEEECCE
Confidence 667999998774 6788999988886457888765553
No 10
>2bh1_X General secretion pathway protein E,; transport protein, type II secretion, EPS, transmembrane, transport, ATP-binding; 2.4A {Vibrio cholerae} SCOP: d.52.10.1
Probab=39.36 E-value=92 Score=21.44 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=42.0
Q ss_pred HHHHCCCeEEEecC--c-eEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhc
Q 026381 20 ELLKEGAVGVVPTD--T-LYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTT 78 (239)
Q Consensus 20 ~~L~~Ggvii~PTd--T-vYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~ 78 (239)
+.+++-+++.+--+ + ++-..++|+|..+++.|..+-+ +++.+.+.+.+++.++..
T Consensus 20 ~~arr~~vlPl~~~~~~~l~va~~dP~~~~aldel~~~~g----~~v~~~va~~~~i~~~i~ 77 (96)
T 2bh1_X 20 SFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVK----HAFQLIELSQAEFESKLT 77 (96)
T ss_dssp HHHHHHTEEEEECSSSCCEEEEECSSCCHHHHHHHHHHHC----SCEEEEECCHHHHHHHHH
T ss_pred HHHHHCCEEEEEECCCcEEEEEEcCCCCHHHHHHHHHHhC----CCceEEEcCHHHHHHHHH
Confidence 45677788876554 4 5677889999999999987754 578788888888877664
No 11
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=29.40 E-value=1.1e+02 Score=25.05 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHCCCeEEEecC------ceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhh
Q 026381 12 SWKLEPVVELLKEGAVGVVPTD------TLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77 (239)
Q Consensus 12 ~~~l~~a~~~L~~Ggvii~PTd------TvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~ 77 (239)
...+++|++.|++|+.|++=.| +-.-+++....++.++.+.+- .+.++-++=+.+.+.++.
T Consensus 5 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~-----~~GliC~~lt~~~~~~L~ 71 (204)
T 1tks_A 5 FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRY-----SSGYVCVPLSEERANQLE 71 (204)
T ss_dssp SCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHT-----BCSCCEEEEEHHHHHHTT
T ss_pred hhhHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHHHh-----CCCcEEEEcCHHHHhhCC
Confidence 3468999999999999999876 667788887888877766532 344444434567777763
No 12
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=28.91 E-value=34 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=28.8
Q ss_pred hHHHHHHHHHCCCeEEEecCceEEEEccCCChHHHHHHHHHhCC
Q 026381 14 KLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNV 57 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTdTvYgL~~~~~n~~Av~ri~~lK~R 57 (239)
.-..|.++|+++|.++ + ++-+||-|.++.++++|-..|-.
T Consensus 71 s~~~A~rAL~~NG~ii---~-G~mIGV~Py~~~~ve~l~~~~~~ 110 (132)
T 3p3d_A 71 NPASAVDALLENGAVF---N-GVLLGVIPYTKDAVERLQKRKLT 110 (132)
T ss_dssp SHHHHHHHHTTTTCEE---T-TEECEEEECCHHHHHHHC-----
T ss_pred CHHHHHHHHHhCCeEe---C-cEEEEEEECCHHHHHHHhcCCcc
Confidence 4457889999888876 2 35999999999999998876653
No 13
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=28.66 E-value=1.1e+02 Score=25.44 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=45.9
Q ss_pred hHHHHHHHHHCCCeEEEecC------ceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhhccCCC
Q 026381 14 KLEPVVELLKEGAVGVVPTD------TLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPR 82 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTd------TvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~~~~p~ 82 (239)
.+++|++.|++|+.|++=.| +-.-+++..-.++.+..+.+- ...++-++=+.+.+.++. +|.
T Consensus 3 ~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~~~-----~~GliC~~l~~e~~~~L~--Lp~ 70 (227)
T 1snn_A 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKD-----AGGLICTALHPDICNKLG--IPF 70 (227)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHH-----TEEEEEEEECHHHHHHHT--CCC
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHc-----CCCcEEEEcCHHHHhhCC--Chh
Confidence 58899999999999999776 678888888888877776542 345555555677777774 554
No 14
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=28.62 E-value=60 Score=25.68 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHCCCeEEEecC
Q 026381 12 SWKLEPVVELLKEGAVGVVPTD 33 (239)
Q Consensus 12 ~~~l~~a~~~L~~Ggvii~PTd 33 (239)
...++++.+.|+.||.+++-||
T Consensus 133 ~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 133 SHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp HHHHHHHHHHHTTSCEEEEEES
T ss_pred HHHHHHHHHHcCCCCEEEEEeC
Confidence 4568888999999999988775
No 15
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=26.58 E-value=1.2e+02 Score=24.96 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHCCCeEEEecC------ceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhh
Q 026381 12 SWKLEPVVELLKEGAVGVVPTD------TLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77 (239)
Q Consensus 12 ~~~l~~a~~~L~~Ggvii~PTd------TvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~ 77 (239)
...+++|++.|++|+.|++=.| +-.-+++....++.++.+.+-- ..++-++=+.+.+.++-
T Consensus 13 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~~~~-----~GliCl~lt~~ra~~L~ 79 (217)
T 1g57_A 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHG-----SGIVCLCITEDRRKQLD 79 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHB-----CSCCEEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHHHhC-----CCceEEECCHHHHhhCC
Confidence 4579999999999999999876 5577777777887777664322 23333333466666663
No 16
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=25.06 E-value=1.5e+02 Score=24.34 Aligned_cols=60 Identities=12% Similarity=0.006 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHCCCeEEEecC------ceEEEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChHHHhhhh
Q 026381 13 WKLEPVVELLKEGAVGVVPTD------TLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYT 77 (239)
Q Consensus 13 ~~l~~a~~~L~~Ggvii~PTd------TvYgL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~~l~~~~ 77 (239)
..+++|.+.|++|+.|++=.| +-.-+++..-.++.++.+.+- ...++-++=+.+.+.++-
T Consensus 5 ~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~-----~~GliC~~lt~~~a~~L~ 70 (206)
T 3mio_A 5 DSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRY-----TSGYLCVPLDGAICDRLG 70 (206)
T ss_dssp CCHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHHH-----BCSCCEEEECHHHHHHTT
T ss_pred hhHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHHh-----CCCceEEECCHHHHhhCC
Confidence 468999999999999999775 667778877788877766543 233333333466666663
No 17
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=23.72 E-value=64 Score=28.88 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=36.2
Q ss_pred ChhhHHHHHHHHHCCC--eEEEecCceEE-------EEccCCChHHHHHHHHHhCCCC
Q 026381 11 DSWKLEPVVELLKEGA--VGVVPTDTLYA-------IVCDLKSHSAIERLRRIKNVEP 59 (239)
Q Consensus 11 ~~~~l~~a~~~L~~Gg--vii~PTdTvYg-------L~~~~~n~~Av~ri~~lK~R~~ 59 (239)
+.+++.++++.|++|| ++|+|--|-.- +.-.+++..+++-.+.+=.+..
T Consensus 208 n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg 265 (367)
T 1iuq_A 208 NTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSD 265 (367)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcC
Confidence 3468889999999966 66688776655 4456789999987777776643
No 18
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox regulation, thioredoxin, allostery, hydrolase; 2.20A {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Probab=22.05 E-value=50 Score=29.43 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=47.3
Q ss_pred hHHHHHHHHHCCCeEEEecCceE----------------------EEEccCCChHHHHHHHHHhCCCCCCCeEEEeCChH
Q 026381 14 KLEPVVELLKEGAVGVVPTDTLY----------------------AIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLR 71 (239)
Q Consensus 14 ~l~~a~~~L~~Ggvii~PTdTvY----------------------gL~~~~~n~~Av~ri~~lK~R~~~Kpl~llv~s~~ 71 (239)
.+.+..++|..||++.+|.|.-+ |.+.+- .+||.+++-...++-.+++++|.+
T Consensus 273 mV~DvhriL~~GGif~yP~d~~~p~GKLRllyE~aPma~ivEqAGG~asdG-----~~~iLdi~p~~lHqR~p~~~GS~~ 347 (357)
T 1dcu_A 273 LVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDG-----HQRVLDIQPTEIHQRVPLYIGSTE 347 (357)
T ss_dssp HHHHHHHHHHHCCEEEECCCSSSTTCSSBTTTTHHHHHHHHHHTTCEEESS-----SSBGGGSCCCSTTCBCCEEEECHH
T ss_pred cHHHHHHHHhcCeEEEccccccCCCcchhhHhhhhhHHHHHHHcCCEEecC-----CccccccCCCcccccCCeEEeCHH
Confidence 45677888899999999999731 444442 358999999999999999999999
Q ss_pred HHhhhh
Q 026381 72 DIDTYT 77 (239)
Q Consensus 72 ~l~~~~ 77 (239)
++.++.
T Consensus 348 eV~~~~ 353 (357)
T 1dcu_A 348 EVEKVE 353 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 19
>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A
Probab=21.34 E-value=25 Score=30.46 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=24.7
Q ss_pred cCCCCeEEEEeCChHHHHHHHHHcCCcEEecccCCCC
Q 026381 127 YSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLK 163 (239)
Q Consensus 127 ~~~~~tigvRiP~~~~~~~Ll~~~g~PL~~TSAN~sg 163 (239)
++.++++|+|++-..+ +.|.|++.||.++||
T Consensus 116 NG~rGa~GikI~L~~I------~~g~pviitsG~LSG 146 (295)
T 1hq0_A 116 NSARGANGIKIALEEV------QEGKPVIITSGNLSG 146 (295)
T ss_dssp CBTEEEEEEEEEGGGC------BTTBCEEEECCCBSS
T ss_pred CCCCcceeEEEEHHHc------CCCCeEEEeCCcccC
Confidence 4667899999985443 467899999999986
Done!