RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026381
(239 letters)
>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 110 bits (275), Expect = 2e-30
Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 17/220 (7%)
Query: 2 YVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSK 61
+ P + VE++++G V V PTD+ YA+ C ++ +A+ER+ RI+ +
Sbjct: 4 FFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGH 63
Query: 62 PLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYG 121
+++CR L ++ TY+ FR +K+ PG YTFIL +KEVP++ ++
Sbjct: 64 NFTLMCRDLSELSTYS--------FVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEK 115
Query: 122 TTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPE 181
T +G+R+P++ I QA+L+ + P++STS+ DP I D +
Sbjct: 116 RKT--------IGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQ 167
Query: 182 GLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKLYWM 221
+D ++ GG +P+TV+D+T P ++R+G G ++
Sbjct: 168 -VDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL 206
>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 208
Score = 85.4 bits (210), Expect = 5e-21
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 23/217 (10%)
Query: 1 MYVEADPSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPS 60
+ + LE + +++ G + + PTDT+Y + + A+ RL R+K P
Sbjct: 2 LIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPH 61
Query: 61 KPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRY 120
KP+SI + +I ++ + + ++ LPGPYT +L ++ +P
Sbjct: 62 KPVSICVSCVDEIPRFS--------RPSGDAMELMERILPGPYTVVLERNELIPDVITGG 113
Query: 121 GTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGP 180
VG+R+P+D IC+ I + P+ +TS ++ D
Sbjct: 114 ---------SSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVRDLD-- 160
Query: 181 EGLDFVVDGGV-RVAEPSTVVDMTGTYPKIIRQGKGP 216
+D V+D G EPSTV+D+T P+++R+GKGP
Sbjct: 161 -AVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGP 196
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
[TaxId: 562]}
Length = 186
Score = 78.1 bits (191), Expect = 2e-18
Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 18/197 (9%)
Query: 15 LEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDID 74
+ +++L E V PT+ ++ + CD S +A+ RL +K K L ++ + +
Sbjct: 8 IAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLK 67
Query: 75 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVG 134
Y D Q + PGP TF+ A P+ +
Sbjct: 68 PYIDDTMLTDVQ-----RETIFSRWPGPVTFVFPAPATTPRWLTGR---------FDSLA 113
Query: 135 VRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVA 194
VR+ + + A+ Q PL+STS L + +G V
Sbjct: 114 VRVTDHPLVVALCQAYGKPLVSTSA-NLSGLPPCRTVDEVRAQFGAA-FPVVPGETGGRL 171
Query: 195 EPSTVVDMTGTYPKIIR 211
PS + D ++ R
Sbjct: 172 NPSEIRDALT--GELFR 186
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2
{Sphingomonas sp. [TaxId: 28214]}
Length = 492
Score = 28.4 bits (62), Expect = 0.78
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 159 VKWLKDNEWMVDPVVIADTYGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQGKGPKL 218
+K+ + + P +G G+ + + G V + S + ++ G +
Sbjct: 330 IKFF--DFYFSRPGRDISNFGVPGVTYDIKNGKAVFKDSVLKSPQPVNNQLYDMGAQIPI 387
Query: 219 YWMEEED 225
+ ++ D
Sbjct: 388 GFWQDYD 394
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 25.5 bits (56), Expect = 1.4
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 151 DAPLISTSVKWLKDN-EWMVDP 171
DAP + WL+ + E+ VDP
Sbjct: 24 DAPRRAELEMWLQGHPEFAVDP 45
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 25.8 bits (57), Expect = 2.5
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 44 SHSAIERLRRIKNVEPSK 61
SA RL + V+P K
Sbjct: 41 DQSARARLSNLALVKPEK 58
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 72
Score = 25.0 bits (55), Expect = 2.6
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 44 SHSAIERLRRIKNVEPSK 61
+ A RL ++ P
Sbjct: 18 TPEARSRLANLRLTRPDF 35
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
[TaxId: 10754]}
Length = 554
Score = 26.5 bits (58), Expect = 3.5
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 161 WLKDNEWMVDPVVIADT--------YGPEGLDFVVDGGVRVAEPSTVVDMTGTYPKIIRQ 212
W DN+W+ D + T Y P D+V G+ P T IR+
Sbjct: 95 WTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRE 154
Query: 213 GKG 215
G
Sbjct: 155 CIG 157
>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
Length = 405
Score = 25.7 bits (55), Expect = 5.5
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 160 KWLK--DNEWMVDPVVIADTYGPE 181
L D + PV++ + +
Sbjct: 374 AKLLDRDLNLNLPPVILQENSKDQ 397
>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus
subtilis [TaxId: 1423]}
Length = 333
Score = 25.5 bits (54), Expect = 7.3
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 13/137 (9%)
Query: 75 TYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTA------------SKEVPKKCVRYGT 122
T+ G G ++ L T I TA K + + R
Sbjct: 20 TWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKAIKEYMKRDQV 79
Query: 123 TTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIADTYGPEG 182
A + ++ A I+++++ L ++ + ++ E
Sbjct: 80 ILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEV 139
Query: 183 LDFVVDGG-VRVAEPST 198
+ + D G +R S
Sbjct: 140 MKELYDAGKIRAIGVSN 156
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.413
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 944,299
Number of extensions: 44631
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 13
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)