Query 026382
Match_columns 239
No_of_seqs 175 out of 452
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d74_B Translation initiation 100.0 1.6E-43 5.4E-48 295.3 8.7 112 115-232 5-117 (148)
2 1nee_A EIF-2-beta, probable tr 100.0 1.7E-44 5.8E-49 298.1 2.3 113 115-233 4-116 (138)
3 3cw2_K Translation initiation 100.0 2.5E-44 8.4E-49 297.4 -9.5 112 115-231 4-115 (139)
4 2e9h_A EIF-5, eukaryotic trans 100.0 6.6E-37 2.3E-41 257.5 8.5 104 126-233 10-117 (157)
5 2g2k_A EIF-5, eukaryotic trans 100.0 1.3E-35 4.6E-40 252.3 9.3 95 139-233 12-110 (170)
6 1k8b_A EIF-2-beta, probable tr 99.9 6E-24 2.1E-28 149.4 6.4 52 149-202 1-52 (52)
7 2ogh_A Eukaryotic translation 89.3 0.94 3.2E-05 35.3 6.5 57 155-216 37-97 (108)
8 4h62_V Mediator of RNA polymer 81.5 0.83 2.8E-05 28.1 2.0 21 201-221 7-27 (31)
9 2xzm_F EIF1; ribosome, transla 77.5 4.9 0.00017 30.9 5.8 56 154-214 29-88 (101)
10 2if1_A EIF1, SUI1; translation 74.1 2.3 8E-05 34.1 3.3 58 152-214 51-113 (126)
11 1d1r_A Hypothetical 11.4 KD pr 71.3 1.9 6.4E-05 34.3 2.0 56 154-214 44-99 (116)
12 1k81_A EIF-2-beta, probable tr 63.3 2.3 7.8E-05 27.0 0.9 14 220-233 1-14 (36)
13 3lsg_A Two-component response 46.2 19 0.00067 25.7 3.7 27 162-188 21-47 (103)
14 3mn2_A Probable ARAC family tr 44.6 20 0.00069 25.9 3.5 28 161-188 19-46 (108)
15 2k9s_A Arabinose operon regula 42.1 24 0.00081 25.5 3.6 27 162-188 22-48 (107)
16 3oou_A LIN2118 protein; protei 42.0 24 0.00081 25.5 3.6 27 162-188 23-49 (108)
17 3oio_A Transcriptional regulat 39.8 25 0.00087 25.6 3.5 28 161-188 24-51 (113)
18 1u8b_A ADA polyprotein; protei 39.6 25 0.00085 26.5 3.5 28 161-188 94-121 (133)
19 2mob_A Protein (methane monoox 34.9 1.8E+02 0.0061 23.6 8.0 66 130-202 61-127 (138)
20 1bl0_A Protein (multiple antib 34.7 31 0.001 25.9 3.3 28 161-188 28-55 (129)
21 1tc3_C Protein (TC3 transposas 27.4 50 0.0017 19.3 2.8 21 162-182 23-43 (51)
22 3na7_A HP0958; flagellar bioge 25.8 25 0.00087 30.2 1.6 30 202-233 207-236 (256)
23 2inp_L Phenol hydroxylase comp 24.6 69 0.0024 24.0 3.6 68 125-199 18-86 (89)
24 3mkl_A HTH-type transcriptiona 23.9 64 0.0022 23.7 3.4 27 161-188 24-50 (120)
25 3ng2_A RNF4, snurf, ring finge 22.8 48 0.0016 21.8 2.2 27 210-236 42-68 (71)
26 1d5y_A ROB transcription facto 22.2 47 0.0016 27.7 2.5 27 162-188 21-47 (292)
27 2xeu_A Ring finger protein 4; 21.6 80 0.0027 20.1 3.1 27 210-236 35-61 (64)
28 1nd9_A Translation initiation 20.9 80 0.0027 19.5 2.9 25 162-187 4-28 (49)
29 3ojy_B Complement component C8 20.1 82 0.0028 30.2 4.0 30 206-236 433-462 (537)
No 1
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=100.00 E-value=1.6e-43 Score=295.32 Aligned_cols=112 Identities=33% Similarity=0.604 Sum_probs=107.2
Q ss_pred CccHHHHHHHHHHHHHhcCCCcc-ccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecC
Q 026382 115 DYEYEELLGRVFNILRENNPELA-GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG 193 (239)
Q Consensus 115 ~y~YeeLL~R~~~~L~~~nPd~~-~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg 193 (239)
.|+|++||+|||++| |+.+ ++.+||+||+|+|.++|+ ||+|+||.+||++|||+|+||++||++||||+|+||
T Consensus 5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eGk-KTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id- 78 (148)
T 2d74_B 5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEGN-KTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE- 78 (148)
T ss_dssp TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEETT-EEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-
T ss_pred cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEecC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-
Confidence 578999999999999 8877 778999999999999996 999999999999999999999999999999999999
Q ss_pred CceEEEEeecChHHHHHHHHHHHHhccccCCCCcCccCc
Q 026382 194 QQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKS 232 (239)
Q Consensus 194 ~~rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~ 232 (239)
++||||||+|++++|+++|++||++||+|++|..|.+.=
T Consensus 79 ~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L 117 (148)
T 2d74_B 79 GRRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKI 117 (148)
T ss_dssp TTEEEESSCCCHHHHHHHHHHHHHHHSSCSSSCCTTCCC
T ss_pred CCEEEEEeeeCHHHHHHHHHHHHHHEEECCCCCCcCcEE
Confidence 789999999999999999999999999999999998753
No 2
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=100.00 E-value=1.7e-44 Score=298.09 Aligned_cols=113 Identities=27% Similarity=0.486 Sum_probs=106.8
Q ss_pred CccHHHHHHHHHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 026382 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ 194 (239)
Q Consensus 115 ~y~YeeLL~R~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~ 194 (239)
+|+|++||+|||++| |+..++.+||+||+|+|.++|+ ||+|+||.+||++|||+|+||++||++||||+|++| +
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~~mp~~~v~~eG~-kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~ 77 (138)
T 1nee_A 4 MDDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQGN-RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-G 77 (138)
T ss_dssp CCSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEETT-EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-T
T ss_pred ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECC-cEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-C
Confidence 688999999999999 5555778999999999999997 799999999999999999999999999999999999 8
Q ss_pred ceEEEEeecChHHHHHHHHHHHHhccccCCCCcCccCce
Q 026382 195 QRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSV 233 (239)
Q Consensus 195 ~rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~~ 233 (239)
+||||||+|++++|+++|++||++||+|++|..|.+.=+
T Consensus 78 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~ 116 (138)
T 1nee_A 78 GRAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRII 116 (138)
T ss_dssp TTEEEESSCSSSHHHHHHHHHHTHHHHHTCCSSCSSCCE
T ss_pred CEEEEEeeeCHHHHHHHHHHHHhhEEECCCCCCcCcEEE
Confidence 899999999999999999999999999999999988643
No 3
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=100.00 E-value=2.5e-44 Score=297.42 Aligned_cols=112 Identities=26% Similarity=0.495 Sum_probs=106.6
Q ss_pred CccHHHHHHHHHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 026382 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ 194 (239)
Q Consensus 115 ~y~YeeLL~R~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~ 194 (239)
+|+|++||+|||++| |+..++.+||+||+|+|.++|+ ||+|+||.+||++|||+|+||++||++||||+|++|++
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~kmp~~~v~~eG~-kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~ 78 (139)
T 3cw2_K 4 EKEYVEMLDRLYSKL----PEKGRKEGTQSLPNMIILNIGN-TTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK 78 (139)
T ss_dssp SGGGHHHHTTTTTSS----TTSSSCSSCCSCCCCCCCCCSS-SCCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSSS
T ss_pred ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECCC
Confidence 689999999999999 5544678999999999999998 79999999999999999999999999999999999988
Q ss_pred ceEEEEeecChHHHHHHHHHHHHhccccCCCCcCccC
Q 026382 195 QRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYK 231 (239)
Q Consensus 195 ~rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~ 231 (239)
+||||||+|++++|+++|++||++||+|++|..|.+.
T Consensus 79 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~ 115 (139)
T 3cw2_K 79 GELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTI 115 (139)
T ss_dssp CCCTTTCSCCSCCSCSTTTTTSSCCSSCCSSSSSCCC
T ss_pred CeEEEEeeeCHHHHHHHHHHHHHHeeECCCCCCcCcE
Confidence 8999999999999999999999999999999999875
No 4
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=257.53 Aligned_cols=104 Identities=24% Similarity=0.346 Sum_probs=95.2
Q ss_pred HHHHHhcCCCccccccccccCCCeEEEeCc---eeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeec-CCceEEEEe
Q 026382 126 FNILRENNPELAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLD-GQQRLVVKG 201 (239)
Q Consensus 126 ~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~---kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsid-g~~rLII~G 201 (239)
+++++.++|. -+||+||+|+|.++|+ +||+|+||.|||++|||+|+||++||++||||+|+|| +++||||+|
T Consensus 10 ~nI~r~~~d~----~~RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G 85 (157)
T 2e9h_A 10 VNVNRSVSDQ----FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG 85 (157)
T ss_dssp EESSTTCCCS----CCCCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEB
T ss_pred EeccCCCCCc----ccceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence 4556555554 4699999999999997 8999999999999999999999999999999999999 588999999
Q ss_pred ecChHHHHHHHHHHHHhccccCCCCcCccCce
Q 026382 202 RFAPKNFEGILRRYVSKYFLKSSFVLNIYKSV 233 (239)
Q Consensus 202 rf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~~ 233 (239)
+|++++||++|++||++||+|++|..|.+.=+
T Consensus 86 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~ 117 (157)
T 2e9h_A 86 SHEANKLQDMLDGFIKKFVLCPECENPETDLH 117 (157)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEE
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEE
Confidence 99999999999999999999999999987544
No 5
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=252.32 Aligned_cols=95 Identities=24% Similarity=0.344 Sum_probs=90.5
Q ss_pred cccccccCCCeEEEeCc---eeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEEEeecChHHHHHHHHH
Q 026382 139 DRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVVKGRFAPKNFEGILRR 214 (239)
Q Consensus 139 ~~~Rf~mP~p~V~reG~---kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg-~~rLII~Grf~~k~Ie~vL~k 214 (239)
..+||+||+|+|.++|+ +||+|+||.+||++|||+|+||++||++||||+|+||+ ++||||+|+|++++||++|++
T Consensus 12 ~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~~~~~i~~~L~~ 91 (170)
T 2g2k_A 12 QFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDG 91 (170)
T ss_dssp CCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCCCHHHHHHHHHH
T ss_pred ccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHH
Confidence 36799999999999996 79999999999999999999999999999999999997 889999999999999999999
Q ss_pred HHHhccccCCCCcCccCce
Q 026382 215 YVSKYFLKSSFVLNIYKSV 233 (239)
Q Consensus 215 YI~eYVlC~~C~~~~~~~~ 233 (239)
||++||+|++|..|.+.=+
T Consensus 92 yI~~YVlC~~C~sPdT~L~ 110 (170)
T 2g2k_A 92 FIKKFVLCPECENPETDLH 110 (170)
T ss_dssp HHHHHHSCTTTSSSCEEEE
T ss_pred HHHHeEECCCCCCCccEEE
Confidence 9999999999999987544
No 6
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.89 E-value=6e-24 Score=149.42 Aligned_cols=52 Identities=35% Similarity=0.703 Sum_probs=50.0
Q ss_pred eEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEee
Q 026382 149 QVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGR 202 (239)
Q Consensus 149 ~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Gr 202 (239)
+|.++|+ ||+|+||.|||++|||+|+||++||++||||+|++| ++||||+|+
T Consensus 1 ~v~~eG~-kTvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~ 52 (52)
T 1k8b_A 1 EILIEGN-RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-GGRLILQRR 52 (52)
T ss_dssp CEEEETT-EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-TTEEEEECC
T ss_pred CcEEEcC-eEEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-CCEEEEeCC
Confidence 5899998 799999999999999999999999999999999999 789999996
No 7
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=89.29 E-value=0.94 Score=35.27 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=46.0
Q ss_pred ceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCC----ceEEEEeecChHHHHHHHHHHH
Q 026382 155 TKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ----QRLVVKGRFAPKNFEGILRRYV 216 (239)
Q Consensus 155 ~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~----~rLII~Grf~~k~Ie~vL~kYI 216 (239)
+.-|+|.+|.. .-+++-+++.|.+.+|++|++-.+ ..+.|+|-+.....+-++.+++
T Consensus 37 K~VT~V~Gl~~-----~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g~ 97 (108)
T 2ogh_A 37 KTLTTVQGVPE-----EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLG 97 (108)
T ss_dssp CCEEEEECCCT-----TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCc-----chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcCC
Confidence 35688999962 448999999999999999999422 3899999999887777777654
No 8
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=81.45 E-value=0.83 Score=28.14 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=17.2
Q ss_pred eecChHHHHHHHHHHHHhccc
Q 026382 201 GRFAPKNFEGILRRYVSKYFL 221 (239)
Q Consensus 201 Grf~~k~Ie~vL~kYI~eYVl 221 (239)
-||..++|+.+|++-|+.||.
T Consensus 7 trfdekqieelldncietfva 27 (31)
T 4h62_V 7 TRFDEKQIEELLDNCIETFVA 27 (31)
T ss_dssp ---CHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 389999999999999999985
No 9
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=77.48 E-value=4.9 Score=30.92 Aligned_cols=56 Identities=7% Similarity=0.054 Sum_probs=42.9
Q ss_pred CceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceee-cC---CceEEEEeecChHHHHHHHHH
Q 026382 154 GTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSL-DG---QQRLVVKGRFAPKNFEGILRR 214 (239)
Q Consensus 154 G~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsi-dg---~~rLII~Grf~~k~Ie~vL~k 214 (239)
|+.-|+|.+|. -.-++.-+++.|.+.+|+.|++ ++ +..+.|+|-+.....+-++.+
T Consensus 29 ~K~VT~V~Gl~-----~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~ 88 (101)
T 2xzm_F 29 RKCFTTVEGIP-----PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE 88 (101)
T ss_dssp TEEEEEEECCC-----TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CccEEEEecCC-----CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc
Confidence 34568888985 3557899999999999999999 33 128999999987766555544
No 10
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=74.12 E-value=2.3 Score=34.12 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=44.8
Q ss_pred EeCc-eeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecC----CceEEEEeecChHHHHHHHHH
Q 026382 152 REGT-KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG----QQRLVVKGRFAPKNFEGILRR 214 (239)
Q Consensus 152 reG~-kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg----~~rLII~Grf~~k~Ie~vL~k 214 (239)
|.|+ .-|+|.+|.. .-+++-+++.|.+.+|++|++-. +..+.|+|-+.....+-++.+
T Consensus 51 R~grK~VT~V~GL~~-----~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~ 113 (126)
T 2if1_A 51 RNGRKTLTTVQGIAD-----DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113 (126)
T ss_dssp SSSSCCBCEEBSCCT-----TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH
T ss_pred ecCCccEEEEeCCCC-----chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc
Confidence 4454 3688999972 44799999999999999999943 248999999988766655555
No 11
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=71.26 E-value=1.9 Score=34.27 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=42.8
Q ss_pred CceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHHH
Q 026382 154 GTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRR 214 (239)
Q Consensus 154 G~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~Ie~vL~k 214 (239)
|+.-|+|.+|....- ++.-+++.|.+.+|+.|++-+ +.+.|+|-+.....+-++.+
T Consensus 44 GK~VT~V~Gl~~~~~----dlk~laK~LKkk~acgGtVk~-~~IeiQGD~r~~i~~~L~~~ 99 (116)
T 1d1r_A 44 GKGVCLITGVDLDDA----ELTKLAAELKKKCGCGGAVKD-GVIEIQGDKRDLLKSLLEAK 99 (116)
T ss_dssp SCCCEEEECCCSCHH----HHHHHHHHHTTSSSSCCBCCS-SCEEECSCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCcCchh----hHHHHHHHHHHHhcCCcEEcC-CEEEEeCcHHHHHHHHHHHc
Confidence 345799999974221 357899999999999999964 59999999987766655554
No 12
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=63.28 E-value=2.3 Score=26.98 Aligned_cols=14 Identities=7% Similarity=-0.192 Sum_probs=11.7
Q ss_pred cccCCCCcCccCce
Q 026382 220 FLKSSFVLNIYKSV 233 (239)
Q Consensus 220 VlC~~C~~~~~~~~ 233 (239)
|+|++|..|.+.-+
T Consensus 1 VlC~~C~~peT~l~ 14 (36)
T 1k81_A 1 VICRECGKPDTKII 14 (36)
T ss_dssp CCCSSSCSCEEEEE
T ss_pred CCCcCCCCCCcEEE
Confidence 89999999987643
No 13
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=46.21 E-value=19 Score=25.73 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=25.1
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 162 NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
++.+||+.++-++.|+.+.|..++|++
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 578999999999999999999999985
No 14
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=44.57 E-value=20 Score=25.88 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=25.4
Q ss_pred eehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 161 VNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 161 ~NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
.++.+||..++-++.|+.+.|..++|++
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~~G~s 46 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRSRGYS 46 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHhCcC
Confidence 3578999999999999999999999984
No 15
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=42.08 E-value=24 Score=25.50 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=25.2
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 162 NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
++.+||+.++-++.|+.+.|..++|++
T Consensus 22 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 48 (107)
T 2k9s_A 22 DIASVAQHVCLSPSRLSHLFRQQLGIS 48 (107)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCcC
Confidence 578999999999999999999999985
No 16
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=41.99 E-value=24 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=25.3
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 162 NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
++.+||..++-++.|+.+.|..++|++
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk~~~G~s 49 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQKEMGEH 49 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 578999999999999999999999985
No 17
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=39.82 E-value=25 Score=25.59 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=25.6
Q ss_pred eehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 161 VNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 161 ~NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
.++.+||..++-++.|+.+.|..++|++
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 3578999999999999999999999985
No 18
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=39.61 E-value=25 Score=26.50 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=25.8
Q ss_pred eehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 161 VNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 161 ~NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
.++.+||..++-+|.|+.+.|..++|.+
T Consensus 94 ~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 94 VTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 4588999999999999999999999985
No 19
>2mob_A Protein (methane monooxygenase regulatory protein B); oxidoreductase, methane oxidation; NMR {Methylosinus trichosporium} SCOP: d.137.1.1
Probab=34.92 E-value=1.8e+02 Score=23.58 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=49.9
Q ss_pred HhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEEEee
Q 026382 130 RENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVVKGR 202 (239)
Q Consensus 130 ~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg-~~rLII~Gr 202 (239)
.+.||+..-. =.|.-|++++. ..+..+..+|.+.|.|+=. +..|...=-.+.|.++. +++++|.-.
T Consensus 61 ~~DNP~~~V~-----d~pa~vRIda~-G~L~i~retIeE~LGR~fd-~~eleVnmsS~~GRi~~~DD~f~l~se 127 (138)
T 2mob_A 61 KAKNPSIVVE-----DKAGFWWIKAD-GAIEIDAAEAGELLGKPFS-VYDLLINVSSTVGRAYTLGTKFTITSE 127 (138)
T ss_dssp HHTSSCCEEE-----ECSSCEEEEES-SEEEEECHHHHHHTCSTHH-HHHHHHHGGGCSSCEEEETTEEEEESC
T ss_pred cccCCCeEEE-----ecCCEEEEecC-CeEEEEHHHHHHHhCCCCc-HHHeehhheeeeeeEEEeCCEEEEEec
Confidence 7889984321 13556777775 6788999999999999854 48888888888999965 668888643
No 20
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=34.72 E-value=31 Score=25.90 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=25.5
Q ss_pred eehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 161 VNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 161 ~NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
.++.+||+.++-++.|+.+.|..++|++
T Consensus 28 ~sl~~lA~~~~~S~~~l~r~fk~~~G~s 55 (129)
T 1bl0_A 28 LSLEKVSERSGYSKWHLQRMFKKETGHS 55 (129)
T ss_dssp CCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 3578999999999999999999999984
No 21
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=27.43 E-value=50 Score=19.31 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=18.8
Q ss_pred ehHHHHHHhCCChHHHHHHHH
Q 026382 162 NFMDLCKTMHRQPDHVMTFLL 182 (239)
Q Consensus 162 NF~eI~k~L~R~peHv~kfl~ 182 (239)
...+||+.|+.++..|.+|+.
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHh
Confidence 477999999999999999985
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.84 E-value=25 Score=30.18 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=22.1
Q ss_pred ecChHHHHHHHHHHHHhccccCCCCcCccCce
Q 026382 202 RFAPKNFEGILRRYVSKYFLKSSFVLNIYKSV 233 (239)
Q Consensus 202 rf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~~ 233 (239)
..++..+..+.. =++.|.||+|+..++..-
T Consensus 207 ~lppq~~~~i~~--~~~Iv~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 207 RLNDKIYTEVLT--SGDMITCPYCGRILYAEG 236 (256)
T ss_dssp BCCHHHHHHHHH--SSSCEECTTTCCEEECSC
T ss_pred eeCHHHHHHHHC--CCCEEECCCCCeeEEeCc
Confidence 456777766654 467899999999887543
No 23
>2inp_L Phenol hydroxylase component PHM; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_L 1hqi_A
Probab=24.63 E-value=69 Score=24.00 Aligned_cols=68 Identities=16% Similarity=0.319 Sum_probs=44.3
Q ss_pred HHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEE
Q 026382 125 VFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVV 199 (239)
Q Consensus 125 ~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg-~~rLII 199 (239)
+...+.+.||...- .=.|.-|++++. ..+..|..+|.++|.|+=.- ..|...=-..+|.++. ++++++
T Consensus 18 vVeai~~dNP~~~V-----~d~~a~vrI~a~-g~l~i~~~tieE~LGr~~~~-~elev~mss~~Gri~~~DD~~~~ 86 (89)
T 2inp_L 18 LAEAVMEDNPDAEM-----QHQPAMIRIQAE-KRLVINRETMEEKLGRDWDV-QEMLINVISIAGNVDEDDDHFIL 86 (89)
T ss_dssp HHHHHHSSCTTCEE-----EEETTEEEEECB-SEEEECHHHHHHHHTSCCCG-GGTTTTC-CEESEEEEC--CEEE
T ss_pred HHHHHHhHCcCcEE-----EecCCEEEEecC-CeEEEEHHHHHHHhCCCCcH-HHeeeeheeeeeEEEEeCCEEEE
Confidence 55667789998421 113667888885 68889999999999998543 4444444455666643 445544
No 24
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=23.94 E-value=64 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=23.5
Q ss_pred eehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 161 VNFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 161 ~NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
.++.+||..++-++.|+.+.|... |++
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~~-G~s 50 (120)
T 3mkl_A 24 WTLARIASELLMSPSLLKKKLREE-ETS 50 (120)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHT-TCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHc-CCC
Confidence 357899999999999999999876 864
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=22.82 E-value=48 Score=21.80 Aligned_cols=27 Identities=11% Similarity=-0.088 Sum_probs=19.6
Q ss_pred HHHHHHHHhccccCCCCcCccCceeee
Q 026382 210 GILRRYVSKYFLKSSFVLNIYKSVVWL 236 (239)
Q Consensus 210 ~vL~kYI~eYVlC~~C~~~~~~~~~~~ 236 (239)
.-|.+++..-..||.|..++...-+.-
T Consensus 42 ~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 42 QCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp HHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred HHHHHHHHcCCCCCCCCCccChhheee
Confidence 345566666789999999988765543
No 26
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=22.19 E-value=47 Score=27.66 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=24.7
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcCc
Q 026382 162 NFMDLCKTMHRQPDHVMTFLLAELGTS 188 (239)
Q Consensus 162 NF~eI~k~L~R~peHv~kfl~~ELGT~ 188 (239)
++.++|+.++-++.|+.++|..++|++
T Consensus 21 ~~~~la~~~~~s~~~l~r~f~~~~g~s 47 (292)
T 1d5y_A 21 SLDNVAAKAGYSKWHLQRMFKDVTGHA 47 (292)
T ss_dssp CCHHHHTTTSSCHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 468999999999999999999999974
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=21.57 E-value=80 Score=20.05 Aligned_cols=27 Identities=11% Similarity=-0.088 Sum_probs=19.1
Q ss_pred HHHHHHHHhccccCCCCcCccCceeee
Q 026382 210 GILRRYVSKYFLKSSFVLNIYKSVVWL 236 (239)
Q Consensus 210 ~vL~kYI~eYVlC~~C~~~~~~~~~~~ 236 (239)
.-|.+++..-..||.|..++...-+--
T Consensus 35 ~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 35 QCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp HHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred HHHHHHHHcCCCCCCCCccCCccceee
Confidence 345556666779999999988765443
No 28
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.85 E-value=80 Score=19.53 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=21.9
Q ss_pred ehHHHHHHhCCChHHHHHHHHHhhcC
Q 026382 162 NFMDLCKTMHRQPDHVMTFLLAELGT 187 (239)
Q Consensus 162 NF~eI~k~L~R~peHv~kfl~~ELGT 187 (239)
+..++|+.|+.++..++.+|. ++|.
T Consensus 4 rv~~lAkel~~~~k~l~~~l~-~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFA-DAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHH-HHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHH-HcCC
Confidence 457999999999999999985 6887
No 29
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=20.14 E-value=82 Score=30.18 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhccccCCCCcCccCceeee
Q 026382 206 KNFEGILRRYVSKYFLKSSFVLNIYKSVVWL 236 (239)
Q Consensus 206 k~Ie~vL~kYI~eYVlC~~C~~~~~~~~~~~ 236 (239)
..|+..|..||.+|..| .|..=-..+..|+
T Consensus 433 ~nL~~Ai~~Yl~e~~~c-~C~pC~~~~~~~~ 462 (537)
T 3ojy_B 433 QNMKQALEEFQKEVSSC-HCAPCQGNGVPVL 462 (537)
T ss_dssp HHHHHHHHHHHHHTCGG-GSCCCSTTCEEEE
T ss_pred HHHHHHHHHHHHHhCcc-cCCCCCcCCEEec
Confidence 78999999999999988 7764444555554
Done!