Query 026383
Match_columns 239
No_of_seqs 218 out of 1464
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 12:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026383.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026383hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6qa2 d.219.1.1 (A:2-296) Pr 100.0 4.8E-34 3.5E-38 248.9 14.9 168 50-238 23-193 (295)
2 d1txoa_ d.219.1.1 (A:) putativ 99.9 1.2E-24 8.7E-29 182.4 12.5 132 51-208 7-139 (235)
3 d1b33n_ d.30.1.1 (N:) Allophyc 17.7 33 0.0024 20.6 1.9 12 205-216 37-48 (67)
4 d1nija2 d.237.1.1 (A:224-318) 17.2 29 0.0021 22.2 1.9 13 226-238 30-42 (95)
5 d1hq0a_ d.194.1.1 (A:) Type 1 17.0 51 0.0037 26.1 3.6 23 153-176 143-165 (295)
6 d1b74a1 c.78.2.1 (A:1-105) Glu 15.9 29 0.0021 23.2 1.6 22 84-105 3-25 (105)
7 d1tnra_ b.22.1.1 (A:) Tumor ne 11.7 48 0.0035 22.8 1.9 28 60-87 115-142 (144)
8 d1alya_ b.22.1.1 (A:) Extracel 9.8 76 0.0055 21.8 2.4 28 60-87 117-144 (146)
9 d1prtc2 d.169.1.2 (C:4-89) Per 9.4 39 0.0028 20.9 0.5 12 79-90 47-58 (86)
10 d1v04a_ b.68.6.2 (A:) Serum pa 9.4 1.7E+02 0.012 22.7 4.8 24 159-183 316-339 (340)
No 1
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.8e-34 Score=248.85 Aligned_cols=168 Identities=25% Similarity=0.388 Sum_probs=133.3
Q ss_pred eeeeeec-CCCCCCCceeeccCCCCCCCCCCCeEEEEEecCCCChHHHHHHHHHHHHHHHHhhcccccc--cCCcchHHH
Q 026383 50 FSMAVVQ-ANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTS--ESCGISADV 126 (239)
Q Consensus 50 ~s~~~~~-~r~~~ED~~~v~~~~l~~~~~~~~~~lfgVfDGHGG~~aa~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~ 126 (239)
|+.++++ .|.+|||++.+..+. ..+.++..||||||||||+++|+|++++|+..|.+.+...... .....+.++
T Consensus 23 ~g~~s~~G~R~~~ED~~~~~~~~---~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 99 (295)
T d1a6qa2 23 YGLSSMQGWRVEMEDAHTAVIGL---PSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNG 99 (295)
T ss_dssp EEEEEEEETSSSCCEEEEEEEEE---TTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHH
T ss_pred EEEEeCccCCCcccCeeEEEccc---CCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHH
Confidence 3444444 489999999886432 2333467899999999999999999999999998654322111 112357789
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEECCEEEEEEccCCeEEEEeecCCCCceeEEeCCCCCCCCCHH
Q 026383 127 ITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEF 206 (239)
Q Consensus 127 i~~af~~~d~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~dH~~~~~~ 206 (239)
|+++|..+++.+...... .+....+|||+++++|.++++||||+||||||+++.+ .+++||.||+|+++.
T Consensus 100 l~~a~~~~~~~~~~~~~~----~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~------~~~~lT~dH~~~~~~ 169 (295)
T d1a6qa2 100 IRTGFLEIDEHMRVMSEK----KHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNR------KVHFFTQDHKPSNPL 169 (295)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETT------EEEEECCCCCTTSHH
T ss_pred HHHHHHHHHHHHhhhhhh----ccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecc------cceeeccccCcccHH
Confidence 999999999988765443 3344578999999999999999999999999999988 999999999999999
Q ss_pred HHHHHHHcCCCCCCeEEeeCCeeeeeeEEeec
Q 026383 207 VREELRALHPDDPQIVVLKHKVWRVKGIIQVT 238 (239)
Q Consensus 207 Er~RI~~~g~~d~~~vv~~~g~~RV~G~l~vS 238 (239)
|++||++.|+ .+... |++|.|.+|
T Consensus 170 E~~Ri~~~gg----~v~~~----r~~g~l~~t 193 (295)
T d1a6qa2 170 EKERIQNAGG----SVMIQ----RVNGSLAVS 193 (295)
T ss_dssp HHHHHHHTTC----CEETT----EETTTBSCS
T ss_pred HHhhHhhcCC----ccccc----ccCCceeee
Confidence 9999999995 34332 899988876
No 2
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.91 E-value=1.2e-24 Score=182.35 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=107.2
Q ss_pred eeeeecC-CCCCCCceeeccCCCCCCCCCCCeEEEEEecCCCChHHHHHHHHHHHHHHHHhhcccccccCCcchHHHHHH
Q 026383 51 SMAVVQA-NNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITR 129 (239)
Q Consensus 51 s~~~~~~-r~~~ED~~~v~~~~l~~~~~~~~~~lfgVfDGHGG~~aa~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~ 129 (239)
+.+.+|. |..|||++.+ ...+|+|||||||..+++++++.+...|.+.+ .......+.+.|++
T Consensus 7 ~~s~~G~~R~~nEDa~~~------------~~~l~~V~DG~GG~~~g~~as~~~~~~l~~~~----~~~~~~~~~~~l~~ 70 (235)
T d1txoa_ 7 ARSDRGLVRANNEDSVYA------------GARLLALADGMGGHAAGEVASQLVIAALAHLD----DDEPGGDLLAKLDA 70 (235)
T ss_dssp EEEECCSSCSSCCEEEEE------------CSSEEEEEEEECTTTHHHHHHHHHHHHHGGGG----SSCCCSCHHHHHHH
T ss_pred EECCCCCCCCCCCCcccc------------CCCEEEEEeCCCCcHHHHHHHHHHHHHHHHHh----hccCcccHHHHHHH
Confidence 4455665 7899999977 24599999999999999999999999988432 23334577889999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEECCEEEEEEccCCeEEEEeecCCCCceeEEeCCCCCCCCCHHHH
Q 026383 130 AFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVR 208 (239)
Q Consensus 130 af~~~d~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~dH~~~~~~Er 208 (239)
+|.++++.+.+.... .+....+|||++++++.++++|+||+||||+|+++.+ ++.+||.||++.++.++
T Consensus 71 ~~~~~~~~l~~~~~~----~~~~~~~gtt~~~~~~~~~~l~~anvGDSr~~l~r~g------~~~~lt~dH~~~~~~~~ 139 (235)
T d1txoa_ 71 AVRAGNSAIAAQVEM----EPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDG------ELTQITKDDTFVQTLVD 139 (235)
T ss_dssp HHHHHHHHHHHHHHH----CGGGTTCEECEEEEEEETTEEEEEEESSCEEEEEETT------EEEECSCCCBHHHHHHH
T ss_pred HHHHHHHHHHHHhhc----ccccccceeeeeeeeeccceeEEEecCCccEEEecCC------EEEEecCCCcHHHHhhh
Confidence 999999999877653 2334568999999999999999999999999999998 99999999987544333
No 3
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.67 E-value=33 Score=20.62 Aligned_cols=12 Identities=0% Similarity=-0.045 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCC
Q 026383 205 EFVREELRALHP 216 (239)
Q Consensus 205 ~~Er~RI~~~g~ 216 (239)
-.|++||.+.||
T Consensus 37 f~EQQrI~K~GG 48 (67)
T d1b33n_ 37 FREQQRIQKMGG 48 (67)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 589999999996
No 4
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.23 E-value=29 Score=22.23 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.0
Q ss_pred CCeeeeeeEEeec
Q 026383 226 HKVWRVKGIIQVT 238 (239)
Q Consensus 226 ~g~~RV~G~l~vS 238 (239)
.+++|+||++.+.
T Consensus 30 ~~ilR~KG~v~~~ 42 (95)
T d1nija2 30 DKLLRYKGMLWID 42 (95)
T ss_dssp TTEEEEEEEECBT
T ss_pred CCEEEEEEEEEec
Confidence 4677999998763
No 5
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=16.96 E-value=51 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=18.6
Q ss_pred CCCCCeEEEEEEECCEEEEEEccC
Q 026383 153 ASAGSCCLVGIICSGLLYIANAGD 176 (239)
Q Consensus 153 ~~~GsTa~v~li~~~~l~vANvGD 176 (239)
..+|||.++ -++++.+|..|+|-
T Consensus 143 ~LSGCT~v~-A~K~~~ly~~HtGt 165 (295)
T d1hq0a_ 143 NLSGCTTIV-ARKEGYIYKVHTGT 165 (295)
T ss_dssp CBSSCEEEE-EEETTEEEEEEEEE
T ss_pred cccCcEEEE-EEcCCeEEEEEccC
Confidence 457888766 47899999999993
No 6
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=15.93 E-value=29 Score=23.21 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=17.2
Q ss_pred EEEec-CCCChHHHHHHHHHHHH
Q 026383 84 VGIYD-GHGGPEAARFVNDHLFD 105 (239)
Q Consensus 84 fgVfD-GHGG~~aa~~~~~~l~~ 105 (239)
.|||| |-||-.+.+.+.+.++.
T Consensus 3 IgifDSGiGGLtVl~~l~~~lP~ 25 (105)
T d1b74a1 3 IGIFDSGVGGLTVLKAIRNRYRK 25 (105)
T ss_dssp EEEEESSSTHHHHHHHHHHHSSS
T ss_pred EEEEeCCCCHHHHHHHHHHHCCC
Confidence 58898 78998888887777653
No 7
>d1tnra_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.66 E-value=48 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=19.9
Q ss_pred CCCCceeeccCCCCCCCCCCCeEEEEEe
Q 026383 60 QLEDCSQLESGPLSSLESGPQGTFVGIY 87 (239)
Q Consensus 60 ~~ED~~~v~~~~l~~~~~~~~~~lfgVf 87 (239)
.-.|+..|.......+...+..+|||+|
T Consensus 115 ~~gD~l~V~vs~~~~v~~~~~~TfFG~f 142 (144)
T d1tnra_ 115 TQGDQLSTHTDGIPHLVLSPSTVFFGAF 142 (144)
T ss_dssp CTTCEEEEEEECGGGBCCCTTTSEEEEE
T ss_pred eCCCEEEEEeCCcceEecCCCcEEEEEE
Confidence 4577777765555556666778999987
No 8
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.82 E-value=76 Score=21.81 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=18.9
Q ss_pred CCCCceeeccCCCCCCCCCCCeEEEEEe
Q 026383 60 QLEDCSQLESGPLSSLESGPQGTFVGIY 87 (239)
Q Consensus 60 ~~ED~~~v~~~~l~~~~~~~~~~lfgVf 87 (239)
.-.|+..|.......+...+..+|||+|
T Consensus 117 ~~gD~L~V~v~~~~~v~~~~~~TfFG~f 144 (146)
T d1alya_ 117 QPGASVFVNVTDPSQVSHGTGFTSFGLL 144 (146)
T ss_dssp BTTBCEEEEESCGGGBCCCSSSSEEEEE
T ss_pred cCCCEEEEEECCcceeccCCCcEEEEEE
Confidence 4467777765544455556678999987
No 9
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=9.44 E-value=39 Score=20.95 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=10.1
Q ss_pred CCeEEEEEecCC
Q 026383 79 PQGTFVGIYDGH 90 (239)
Q Consensus 79 ~~~~lfgVfDGH 90 (239)
+..++|++|||.
T Consensus 47 ~gwsi~~lydgt 58 (86)
T d1prtc2 47 PGWSIYGLYDGT 58 (86)
T ss_dssp CTTCEEECSSSE
T ss_pred CCceEEEEeccc
Confidence 368899999995
No 10
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=9.41 E-value=1.7e+02 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=17.6
Q ss_pred EEEEEEECCEEEEEEccCCeEEEEe
Q 026383 159 CLVGIICSGLLYIANAGDSRVVLGR 183 (239)
Q Consensus 159 a~v~li~~~~l~vANvGDSRavl~r 183 (239)
+++++..+++||++.+-| +.++|.
T Consensus 316 ~T~a~~~~g~L~iGs~~~-~~l~C~ 339 (340)
T d1v04a_ 316 STVAAVYKGKLLIGTVFH-KALYCD 339 (340)
T ss_dssp EEEEEEETTEEEEEESSS-CEEEEE
T ss_pred eEEEEEECCEEEEEeeeC-CceEec
Confidence 334456899999999987 555674
Done!