BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026384
         (239 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I9W|A Chain A, Crystal Structure Of The E. Coli Histidine Kinase Sensor
           Tors Sensor Domain
          Length = 290

 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 10/73 (13%)

Query: 34  NEAAPQALKGDEMLKNIFLD--------VKKKFETALGVLRKEKITIAPEDPAAVSQYAN 85
           NE    AL+  +M+ N+ L+        ++K+   A+ +L++ +I I  EDP   +Q A 
Sbjct: 174 NELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI--EDPGVRAQVAT 231

Query: 86  VMKTVREKADLFS 98
            + TV + +DL +
Sbjct: 232 TLTTVSQYSDLLA 244


>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus)
 pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus)
 pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus)
 pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus)
          Length = 718

 Score = 29.6 bits (65), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 110 RTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLT 169
           R  G P A    L L+ + E+ L+D HG E    D L         P +    K      
Sbjct: 513 RVEGRPGASLPPLDLQAL-EKELVDRHGEEVTPEDVLSAA----MYPDVFAHFKDFTATF 567

Query: 170 AEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEF 222
              D +N +L ++    PK  E+ E+++ + +   +K  A+  +    +R+ F
Sbjct: 568 GPLDSLNTRLFLQG---PKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQVF 617


>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus) F1077a
           Mutant
 pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus) F1077a
           Mutant
 pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus) F1077a
           Mutant
 pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
           The Biotin Carboxylase Domain At The N-Terminus) F1077a
           Mutant
          Length = 718

 Score = 28.1 bits (61), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 110 RTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLT 169
           R  G P A    L L+ + E+ L+D HG E    D L         P +    K      
Sbjct: 513 RVEGRPGASLPPLDLQAL-EKELVDRHGEEVTPEDVLSAA----MYPDVFAHFKDFTATF 567

Query: 170 AEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKRE 220
              D +N +L ++    PK  E+ E+++ + +   +K  A+  +    +R+
Sbjct: 568 GPLDSLNTRLFLQG---PKIAEEFEVELERGKTLHIKALAVSDLNRAGQRQ 615


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,844,171
Number of Sequences: 62578
Number of extensions: 225307
Number of successful extensions: 826
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 60
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)