Query 026384
Match_columns 239
No_of_seqs 27 out of 29
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:20:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o39_A Periplasmic protein rel 56.4 23 0.00078 27.5 5.7 35 71-105 53-99 (108)
2 2k48_A Nucleoprotein; viral pr 55.0 33 0.0011 27.3 6.4 76 136-216 27-105 (107)
3 3ubc_A Hemoglobin-like flavopr 49.0 45 0.0015 24.8 6.2 78 100-193 21-98 (131)
4 3itf_A Periplasmic adaptor pro 48.7 17 0.0006 29.5 4.0 79 26-104 9-126 (145)
5 2fup_A Hypothetical protein PA 46.0 60 0.0021 24.8 6.6 63 47-109 8-84 (157)
6 2r80_B Hemoglobin subunit beta 38.7 92 0.0031 23.7 6.6 85 98-193 19-110 (146)
7 4hrt_A Globin-2 A chain; oxyge 37.2 1E+02 0.0035 23.7 6.7 104 71-193 10-119 (150)
8 3gyz_A Chaperone protein IPGC; 36.8 1.4E+02 0.0046 22.6 7.7 91 48-147 42-132 (151)
9 3opc_A Uncharacterized protein 35.1 95 0.0032 24.1 6.3 76 45-124 7-97 (154)
10 2ic9_A Nucleocapsid protein; h 34.5 79 0.0027 24.6 5.5 65 167-236 23-90 (96)
11 1v54_E Cytochrome C oxidase po 34.5 17 0.00059 29.0 1.8 45 56-101 59-103 (109)
12 2l5g_B Putative uncharacterize 33.1 1E+02 0.0036 20.8 5.2 32 180-211 1-34 (42)
13 3g46_A Globin-1; oxygen transp 32.8 81 0.0028 24.1 5.4 104 71-193 9-118 (146)
14 4hrt_B Hemoglobin B chain; oxy 32.7 1.2E+02 0.0042 23.2 6.5 83 100-193 33-121 (152)
15 3gff_A IROE-like serine hydrol 31.9 2.2E+02 0.0077 24.6 8.8 72 52-127 253-327 (331)
16 4gco_A Protein STI-1; structur 30.9 1.4E+02 0.0049 21.1 9.5 90 49-147 20-109 (126)
17 2y69_E Cytochrome C oxidase su 29.8 22 0.00076 29.8 1.8 36 98-133 105-142 (152)
18 2ooe_A Cleavage stimulation fa 29.2 2.9E+02 0.0099 24.1 12.2 75 71-154 40-115 (530)
19 2ca5_A MXIH; transport protein 28.4 63 0.0022 24.7 4.0 29 55-88 27-55 (85)
20 3r8n_J 30S ribosomal protein S 26.2 51 0.0017 24.7 3.1 31 67-97 1-31 (98)
21 4hde_A SCO1/SENC family lipopr 23.9 45 0.0016 25.7 2.6 37 49-85 53-91 (170)
22 1gcv_B Hemoglobin; oxygen stor 23.8 1.5E+02 0.0052 22.6 5.6 102 71-197 2-104 (136)
23 2pms_C Pneumococcal surface pr 21.9 2.6E+02 0.009 22.5 6.7 56 163-225 13-76 (125)
24 3d1k_B Hemoglobin subunit beta 21.4 1.7E+02 0.006 22.2 5.5 103 71-194 2-111 (146)
25 3ngx_A Bifunctional protein fo 21.3 1.5E+02 0.0052 26.4 5.7 69 41-112 4-81 (276)
26 2vhb_A Hemoglobin; heme, respi 21.3 1.9E+02 0.0065 21.6 5.6 101 72-194 2-103 (146)
27 3lnr_A Aerotaxis transducer AE 21.1 2.9E+02 0.0098 22.1 6.9 117 29-153 24-158 (175)
28 3pt8_B Hemoglobin III; oxygen 20.9 2.2E+02 0.0074 21.5 5.9 108 71-194 3-116 (152)
29 1use_A VAsp, vasodilator-stimu 20.6 1.4E+02 0.0047 20.4 4.1 38 181-219 4-41 (45)
30 3fp2_A TPR repeat-containing p 20.2 3.8E+02 0.013 22.5 7.7 33 51-84 211-243 (537)
No 1
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=56.39 E-value=23 Score=27.50 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=26.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHH------------hcCCCChHHHHHH
Q 026384 71 TIAPEDPAAVSQYANVMKTVRE------------KADLFSESQRIAY 105 (239)
Q Consensus 71 ~idp~DpaAVk~YA~~~~~~r~------------k~gl~s~~e~I~~ 105 (239)
+-++-|++||..+++.|-.+.. =..|++|+|+-+.
T Consensus 53 ~ad~FDEaaar~l~~~~~~~~~e~~v~~~r~~~qmy~lLTPEQk~q~ 99 (108)
T 3o39_A 53 ASDTFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQF 99 (108)
T ss_dssp SSSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566899999999997655443 4688999998653
No 2
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=55.04 E-value=33 Score=27.26 Aligned_cols=76 Identities=16% Similarity=0.358 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHcCCCCCChhhH---HHHHHHHHHHHHHHHHHHHHHHH
Q 026384 136 HGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKY---EEQLELKIAKAQLEELKKDALEA 212 (239)
Q Consensus 136 ~g~~a~mm~ALdkvEK~igkpL~rsDkkGM~~L~ae~~kinKklGi~~eDl~K~---eee~ele~aK~ql~elK~~a~e~ 212 (239)
-|...+||+-|.++|+++.. =++-...-..++..+++.++-+|.|.-|- .-+.+...+++-|-+||..--++
T Consensus 27 ~~~~~~tM~~ieeLQ~Ei~~-----~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 27 QGIDPFTMSTLQELQENITA-----HEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999998752 23334444567888899999999998775 66778889999999999988887
Q ss_pred HHHH
Q 026384 213 METQ 216 (239)
Q Consensus 213 m~~~ 216 (239)
..+.
T Consensus 102 va~g 105 (107)
T 2k48_A 102 VAAQ 105 (107)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 3
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=49.01 E-value=45 Score=24.75 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHc
Q 026384 100 SQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179 (239)
Q Consensus 100 ~e~I~~tie~~~~~~~dvR~yL~~l~EiR~~Gl~D~~g~~a~mm~ALdkvEK~igkpL~rsDkkGM~~L~ae~~kinKkl 179 (239)
.+--.......+..-|++|+|+.. |...=-..++.+|+.+=+.+ +|-.+..-..+++..--.++
T Consensus 21 ~~~g~~fy~rlf~~~P~~k~~F~~----------d~~~h~~~l~~al~~~v~~l------d~~~~l~~~l~~L~~~H~~~ 84 (131)
T 3ubc_A 21 NEIGLLFYANLFKEEPTVSVLFQN----------PISSQSRKLMQVLGILVQGI------DNLEGLIPTLQDLGRRHKQY 84 (131)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGCCS----------CHHHHHHHHHHHHHHHHHTG------GGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhChHHHHHccc----------cHHHHHHHHHHHHHHHHHhC------CChHHHHHHHHHHHHHHHHc
Confidence 344455566677888888888875 11112234677777765544 55567766777888877889
Q ss_pred CCCCCChhhHHHHH
Q 026384 180 GIRKEDLPKYEEQL 193 (239)
Q Consensus 180 Gi~~eDl~K~eee~ 193 (239)
||+|+.++-+-+-+
T Consensus 85 gV~p~~f~~~~~~L 98 (131)
T 3ubc_A 85 GVVDSHYPLVGDCL 98 (131)
T ss_dssp TCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999988765433
No 4
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=48.72 E-value=17 Score=29.48 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=33.8
Q ss_pred chhHHhhhhhcCCc-c-CcchHHHHHHH-----------HHHHHHHHHHHhchhccc--------------cccCCCCHH
Q 026384 26 AISVRFFANEAAPQ-A-LKGDEMLKNIF-----------LDVKKKFETALGVLRKEK--------------ITIAPEDPA 78 (239)
Q Consensus 26 ~~~vR~fA~~Aap~-~-~kGdd~lK~iF-----------~~vqkkF~~~l~~lkk~k--------------I~idp~Dpa 78 (239)
+.+.|.||+...|| . -.|+...+.+. -+|+.+.+.++...+... |+-+.=|++
T Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~m~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad~fDea 88 (145)
T 3itf_A 9 GLVPRGSAAEVGSGDNWHPGEELTQRSTQSHMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDEN 88 (145)
T ss_dssp --------------------------CCCCSTTTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCSSCCHH
T ss_pred cchhhhhcCCCCCCCCCCCCchHhhccccccccccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccCCCCHH
Confidence 45678888865554 1 12333322221 245556666555543321 233446899
Q ss_pred HHHHHHHHHHHHHH------------hcCCCChHHHHH
Q 026384 79 AVSQYANVMKTVRE------------KADLFSESQRIA 104 (239)
Q Consensus 79 AVk~YA~~~~~~r~------------k~gl~s~~e~I~ 104 (239)
||..+++.+..+.. =..|.+|+|+-+
T Consensus 89 a~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTPEQk~q 126 (145)
T 3itf_A 89 AVRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQQAV 126 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 99999988665544 357888988755
No 5
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=45.99 E-value=60 Score=24.80 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhchhccccccCCCCHHHH--------------HHHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 026384 47 LKNIFLDVKKKFETALGVLRKEKITIAPEDPAAV--------------SQYANVMKTVREKADLFSESQRIAYTIET 109 (239)
Q Consensus 47 lK~iF~~vqkkF~~~l~~lkk~kI~idp~DpaAV--------------k~YA~~~~~~r~k~gl~s~~e~I~~tie~ 109 (239)
|..++.+...-++.+++.+..+.--|--+|..++ .+++.....+-..+|+|++...+...+..
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~ 84 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE 84 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc
Confidence 5677788888899999998888877777887643 45555556666788999888877666544
No 6
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=38.72 E-value=92 Score=23.72 Aligned_cols=85 Identities=9% Similarity=0.129 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHhhhcCCCcHHHHHHHH------HHHHHcCCCchhhhHHHHHHHHHHHHHhhCCccccccHhhHHHHHHH
Q 026384 98 SESQRIAYTIETRTAGIPDARTYLLTL------KEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAE 171 (239)
Q Consensus 98 s~~e~I~~tie~~~~~~~dvR~yL~~l------~EiR~~Gl~D~~g~~a~mm~ALdkvEK~igkpL~rsDkkGM~~L~ae 171 (239)
..++--.......+..-|+.|+|.... .+++... .--.=-..+|.+|+.+=+.+.. +....+.
T Consensus 19 ~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~--~~~~h~~~v~~~l~~~v~~ld~---------l~~~l~~ 87 (146)
T 2r80_B 19 NVADCGAEALARLLIVYPWTQRFFSSFGNLSSATAISGNP--NVKAHGKKVLTSFGDAVKNLDN---------IKGTFAQ 87 (146)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGGGGGGGCCCSSHHHHHHCH--HHHHHHHHHHHHHHHHHHTTTC---------HHHHTHH
T ss_pred CchHHHHHHHHHHHHHChhHHHHHHHhcCCCcHHHHhcCH--HHHHHHHHHHHHHHHHHHhHhh---------HHHHHHH
Confidence 455666677778888889999999863 3333111 0111123477788877666543 3445666
Q ss_pred HHHHHHH-cCCCCCChhhHHHHH
Q 026384 172 FDKINKK-LGIRKEDLPKYEEQL 193 (239)
Q Consensus 172 ~~kinKk-lGi~~eDl~K~eee~ 193 (239)
+..--.. +||+|+.++-+.+-+
T Consensus 88 L~~~H~~~~~V~p~~f~~~~~~l 110 (146)
T 2r80_B 88 LSELHCDKLHVDPENFRLLGDIL 110 (146)
T ss_dssp HHHHHHHTSCCCTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 6666666 999999988765443
No 7
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=37.15 E-value=1e+02 Score=23.72 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=62.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCCchhhh------HHHHHH
Q 026384 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGA------EAMMMD 144 (239)
Q Consensus 71 ~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~l~EiR~~Gl~D~~g~------~a~mm~ 144 (239)
.++|.+.+.|+.--..++. ...+--.......|..-|+.|+|....+ ++....+. -..+|.
T Consensus 10 ~ls~~~~~~V~~sw~~v~~--------~~~~~g~~~~~rlF~~~P~~k~~F~~~~-----~~~~~~~~~~~~~H~~~v~~ 76 (150)
T 4hrt_A 10 CGSEAIKANLRRSWGVLSA--------DIEATGLMLMSNLFTLRPDTKTYFTRLG-----DVQKGKANSKLRGHAITLTY 76 (150)
T ss_dssp HTCHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHCGGGGGGGGGGC-----CGGGGGGSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHCHHHHHHHHHcC-----CCCccccCHHHHHHHHHHHH
Confidence 4455555555554444332 2344455667777889999999987642 22111111 134788
Q ss_pred HHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 026384 145 ALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQL 193 (239)
Q Consensus 145 ALdkvEK~igkpL~rsDkkGM~~L~ae~~kinKklGi~~eDl~K~eee~ 193 (239)
||+.+=+.+ +|...+..+...+..--.++||+|+.++-+-+-+
T Consensus 77 al~~~v~~l------dd~~~L~~~l~~l~~~H~~~gV~p~~f~~~~~~L 119 (150)
T 4hrt_A 77 ALNNFVDSL------DDPSRLKCVVEKFAVNHINRKISGDAFGAIVEPM 119 (150)
T ss_dssp HHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCCHHHHGGGHHHH
T ss_pred HHHHHHHHC------CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 888887776 3444555555555555555699999887765433
No 8
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=36.77 E-value=1.4e+02 Score=22.62 Aligned_cols=91 Identities=11% Similarity=-0.094 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 026384 48 KNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEI 127 (239)
Q Consensus 48 K~iF~~vqkkF~~~l~~lkk~kI~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~l~Ei 127 (239)
.+.-.-.+.+|..++..+++. |.++|+++.++...+... ...|- .++-|..--....-+..++..|++...-.
T Consensus 42 lg~~~~~~g~~~eA~~~~~~a-l~~~P~~~~~~~~lg~~~----~~~g~--~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFL-CIYDFYNVDYIMGLAAIY----QIKEQ--FQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHH----HHTTC--HHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH----HHHcc--HHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 445555678888888888754 488999999988877543 33443 33333333333333334555566544444
Q ss_pred HHcCCCchhhhHHHHHHHHH
Q 026384 128 RERGLIDEHGAEAMMMDALE 147 (239)
Q Consensus 128 R~~Gl~D~~g~~a~mm~ALd 147 (239)
..+| +...+......||.
T Consensus 115 ~~lg--~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLK--APLKAKECFELVIQ 132 (151)
T ss_dssp HHTT--CHHHHHHHHHHHHH
T ss_pred HHcC--CHHHHHHHHHHHHH
Confidence 4888 77777776666664
No 9
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=35.12 E-value=95 Score=24.05 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHhchhccccccCC-CCHHHHH--------------HHHHHHHHHHHhcCCCChHHHHHHHHHh
Q 026384 45 EMLKNIFLDVKKKFETALGVLRKEKITIAP-EDPAAVS--------------QYANVMKTVREKADLFSESQRIAYTIET 109 (239)
Q Consensus 45 d~lK~iF~~vqkkF~~~l~~lkk~kI~idp-~DpaAVk--------------~YA~~~~~~r~k~gl~s~~e~I~~tie~ 109 (239)
+-|..+..+...-++.++++|..+.--|.- +|+.++. +++.....+-..+|+|++...+...+.
T Consensus 7 ~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~- 85 (154)
T 3opc_A 7 AALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA- 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH-
Confidence 457788888999999999999888877766 7777444 444445556668999998887777664
Q ss_pred hhcCCCcHHHHHHHH
Q 026384 110 RTAGIPDARTYLLTL 124 (239)
Q Consensus 110 ~~~~~~dvR~yL~~l 124 (239)
..|.++.-...+
T Consensus 86 ---~~~~l~~~w~~l 97 (154)
T 3opc_A 86 ---AHPELGPLWQAL 97 (154)
T ss_dssp ---HCGGGHHHHHHH
T ss_pred ---hChHHHHHHHHH
Confidence 235554444433
No 10
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=34.55 E-value=79 Score=24.64 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Q 026384 167 LLTAEFDKINKKLGIRKEDLPKY---EEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVR 236 (239)
Q Consensus 167 ~L~ae~~kinKklGi~~eDl~K~---eee~ele~aK~ql~elK~~a~e~m~~~kkree~k~e~~~dvk~Ld~r 236 (239)
.-.-++..+++.++-+|.|.-|- .-+.+...+++-|-+||...-++..+.+.. ...+||++++--
T Consensus 23 ~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k~~-----~k~~DpTG~Epd 90 (96)
T 2ic9_A 23 TTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQKLA-----SKPVDPTGIEPD 90 (96)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cCCCCCCCCCCc
Confidence 33456778889999999998765 667788899999999999999998877533 367888877643
No 11
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=34.46 E-value=17 Score=28.99 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=32.2
Q ss_pred HHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHH
Q 026384 56 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQ 101 (239)
Q Consensus 56 kkF~~~l~~lkk~kI~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e 101 (239)
+.|-+++-.|-..|.-.. +...-...|-+.++-+++++||+++++
T Consensus 59 ND~alAVR~lE~iK~K~~-~~~~iY~~~lqElkPtl~ELGI~t~Ee 103 (109)
T 1v54_E 59 NDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGISTPEE 103 (109)
T ss_dssp TCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHHTCCCTTT
T ss_pred hhHHHHHHHHHHHHHHhc-CchhhHHHHHHHHhhHHHHhCCCCHHH
Confidence 456667777766666664 334457778888888889999998876
No 12
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.15 E-value=1e+02 Score=20.80 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=21.2
Q ss_pred CCCCCCh-hhH-HHHHHHHHHHHHHHHHHHHHHH
Q 026384 180 GIRKEDL-PKY-EEQLELKIAKAQLEELKKDALE 211 (239)
Q Consensus 180 Gi~~eDl-~K~-eee~ele~aK~ql~elK~~a~e 211 (239)
|+.++|| .|+ +-..|.++.+.+++++++--.+
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667775 444 4566777777888888775443
No 13
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=32.78 E-value=81 Score=24.11 Aligned_cols=104 Identities=11% Similarity=0.124 Sum_probs=63.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCCchhh------hHHHHHH
Q 026384 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHG------AEAMMMD 144 (239)
Q Consensus 71 ~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~l~EiR~~Gl~D~~g------~~a~mm~ 144 (239)
+|++.+-+.|+.=-..++.- ..+--.......|..-|+.|+|+...+ ++....| =-..+|.
T Consensus 9 ~Lt~~~~~~I~~sw~~v~~~--------~~~~g~~~~~rlF~~~P~~k~~F~~~~-----~~~~~~~n~~~~~h~~~v~~ 75 (146)
T 3g46_A 9 QLTADVKKDLRDSWKVIGSD--------KKGNGVALMTTLFADNQETIGYFKRLG-----DVSQGMANDKLRGHSITLMY 75 (146)
T ss_dssp TCCHHHHHHHHHHHHHHGGG--------HHHHHHHHHHHHHHHCGGGGGGGGGGC-----CGGGGGGCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcC--------HHHHHHHHHHHHHHHCHHHHHHHHHHc-----CCCCcccCHHHHHHHHHHHH
Confidence 55666666666655554432 233344566777888999999987542 2211101 1134778
Q ss_pred HHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 026384 145 ALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQL 193 (239)
Q Consensus 145 ALdkvEK~igkpL~rsDkkGM~~L~ae~~kinKklGi~~eDl~K~eee~ 193 (239)
+|+.+=+.+ +|...+.-+...+..--.++||+|+.++-+-+-+
T Consensus 76 al~~~v~~l------dd~~~l~~~l~~l~~~H~~~~V~p~~f~~~~~~l 118 (146)
T 3g46_A 76 ALQNFIDQL------DNPDDLVCVVEKFAVNHITRKISAAEFGKINGPI 118 (146)
T ss_dssp HHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCCHHHHGGGHHHH
T ss_pred HHHHHHHHc------CCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 888776665 4545566666666666668899999888765433
No 14
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=32.69 E-value=1.2e+02 Score=23.22 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCCchhhhH------HHHHHHHHHHHHhhCCccccccHhhHHHHHHHHH
Q 026384 100 SQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAE------AMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFD 173 (239)
Q Consensus 100 ~e~I~~tie~~~~~~~dvR~yL~~l~EiR~~Gl~D~~g~~------a~mm~ALdkvEK~igkpL~rsDkkGM~~L~ae~~ 173 (239)
++--.......+..-|+.|+|+...+ ++....+.. ..+|.+|+.+=+.+ +|...+.-+.+.+.
T Consensus 33 ~~~g~~~y~rlF~~~P~~k~~F~~f~-----~~~~~~~~~~~~~h~~~v~~al~~~v~~l------dd~~~l~~~l~~L~ 101 (152)
T 4hrt_B 33 EGTGLMLMANLFKTSPSAKGKFARLG-----DVSAGKDNSKLRGHSITLMYALQNFVDAL------DDVERLKCVVEKFA 101 (152)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHTGGGC-----CCC---CCHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHhHHHhhHHhC-----CCCccccCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHH
Confidence 44445667777899999999988642 222211111 13778888776655 45556666666666
Q ss_pred HHHHHcCCCCCChhhHHHHH
Q 026384 174 KINKKLGIRKEDLPKYEEQL 193 (239)
Q Consensus 174 kinKklGi~~eDl~K~eee~ 193 (239)
.--.++||+|+.++-+-+-+
T Consensus 102 ~~H~~~gV~p~~f~~~~~~L 121 (152)
T 4hrt_B 102 VNHINRQISADEFGEIVGPL 121 (152)
T ss_dssp HHHHC-CCCHHHHGGGHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHH
Confidence 66677799998887765433
No 15
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}
Probab=31.94 E-value=2.2e+02 Score=24.61 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhchhccccccCC--CCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhh-cCCCcHHHHHHHHHHH
Q 026384 52 LDVKKKFETALGVLRKEKITIAP--EDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRT-AGIPDARTYLLTLKEI 127 (239)
Q Consensus 52 ~~vqkkF~~~l~~lkk~kI~idp--~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~-~~~~dvR~yL~~l~Ei 127 (239)
..+.+-|+.++...+ +++.| .+++++..|-+.+.+ +.....+++++-+...|.+.. +...+.|++...+.++
T Consensus 253 ~~~~~~l~~lf~~~~---~~~~~~~~~~~~l~~~y~~l~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (331)
T 3gff_A 253 IGLYDGIRHLFKDFA---IDIYSDSFSKQQVIDQYGVLSE-RFGHKVTPSQQYLEQLIQYSDRQQLTERKQMLEGLRQH 327 (331)
T ss_dssp HHHHHHHHHHHGGGC---CCCC---CCHHHHHHHHHHHHH-HHTSCCCCCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC---CCCCcccccHHHHHHHHHHHHH-HhCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 334555566666444 23333 345556666655555 677778899999998999888 8999999998877664
No 16
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=30.90 E-value=1.4e+02 Score=21.13 Aligned_cols=90 Identities=14% Similarity=0.036 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 026384 49 NIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIR 128 (239)
Q Consensus 49 ~iF~~vqkkF~~~l~~lkk~kI~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~l~EiR 128 (239)
+.-.-.+.+|..++..+.+. |.++|+++.++...+.... ++|- .++-|...-....-+..++..|+....-..
T Consensus 20 G~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~----~~~~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEA-VKRDPENAILYSNRAACLT----KLME--FQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHH----HTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHhhHHH----hhcc--HHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 33334566788888877653 5789999998887775433 3443 333333333333345556666666555444
Q ss_pred HcCCCchhhhHHHHHHHHH
Q 026384 129 ERGLIDEHGAEAMMMDALE 147 (239)
Q Consensus 129 ~~Gl~D~~g~~a~mm~ALd 147 (239)
..| +...+......||.
T Consensus 93 ~~~--~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMR--EWSKAQRAYEDALQ 109 (126)
T ss_dssp HTT--CHHHHHHHHHHHHH
T ss_pred HCC--CHHHHHHHHHHHHH
Confidence 888 77777666666654
No 17
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=29.80 E-value=22 Score=29.81 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHhhhcCCCc-HHHHHHHHHHHH-HcCCC
Q 026384 98 SESQRIAYTIETRTAGIPD-ARTYLLTLKEIR-ERGLI 133 (239)
Q Consensus 98 s~~e~I~~tie~~~~~~~d-vR~yL~~l~EiR-~~Gl~ 133 (239)
+..-||.+.|..+..+... --.||..+.-.+ ++||.
T Consensus 105 alAVR~lE~vK~K~~~~~~iY~y~lqElkPtl~ELGI~ 142 (152)
T 2y69_E 105 ASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGIS 142 (152)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHhhHHHHhCCC
Confidence 3455566666655544444 233344444444 55653
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=29.18 E-value=2.9e+02 Score=24.13 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=51.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHHH-HcCCCchhhhHHHHHHHHHHH
Q 026384 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIR-ERGLIDEHGAEAMMMDALEKV 149 (239)
Q Consensus 71 ~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~l~EiR-~~Gl~D~~g~~a~mm~ALdkv 149 (239)
.+.|.++..|..|++.-.. .| .-+.+..+.+......|++.-++..+.-++ ..| +..++...+..+++..
T Consensus 40 ~~~P~~~~~w~~~~~~~~~----~~---~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~--~~~~a~~~~~~~~~~a 110 (530)
T 2ooe_A 40 AQFPSSGRFWKLYIEAEIK----AK---NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKG--KLPSYKEKMAQAYDFA 110 (530)
T ss_dssp TTCTTCHHHHHHHHHHHHH----TT---CHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT--TSTTHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHh----cC---CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcc--chhhHHHHHHHHHHHH
Confidence 3579999999999976433 22 345667778887777788887777776665 566 5556666566666665
Q ss_pred HHhhC
Q 026384 150 EKEIK 154 (239)
Q Consensus 150 EK~ig 154 (239)
-..+|
T Consensus 111 l~~~g 115 (530)
T 2ooe_A 111 LDKIG 115 (530)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 55555
No 19
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=28.41 E-value=63 Score=24.71 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=20.4
Q ss_pred HHHHHHHHhchhccccccCCCCHHHHHHHHHHHH
Q 026384 55 KKKFETALGVLRKEKITIAPEDPAAVSQYANVMK 88 (239)
Q Consensus 55 qkkF~~~l~~lkk~kI~idp~DpaAVk~YA~~~~ 88 (239)
.+.-..+++.|+ -+|+||+++..|-.++-
T Consensus 27 ~~~v~~Ai~~L~-----~~PsnPa~LAeyQ~kl~ 55 (85)
T 2ca5_A 27 QGELTLALDKLA-----KNPSNPQLLAEYQSKLS 55 (85)
T ss_dssp HHHHHHHHHHHH-----HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----cCCCCHHHHHHHHHHHH
Confidence 334445666665 38999999999987753
No 20
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=26.24 E-value=51 Score=24.68 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=27.9
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhcCCC
Q 026384 67 KEKITIAPEDPAAVSQYANVMKTVREKADLF 97 (239)
Q Consensus 67 k~kI~idp~DpaAVk~YA~~~~~~r~k~gl~ 97 (239)
|++|.|...|.+.+..|++.+..+.+..|+.
T Consensus 1 ~irI~L~s~d~~~Ld~~~~~i~~~ak~~g~~ 31 (98)
T 3r8n_J 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQ 31 (98)
T ss_dssp CBCCEEEBSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHhCCe
Confidence 4688999999999999999999999988875
No 21
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=23.92 E-value=45 Score=25.71 Aligned_cols=37 Identities=8% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhchhccccccCC--CCHHHHHHHHH
Q 026384 49 NIFLDVKKKFETALGVLRKEKITIAP--EDPAAVSQYAN 85 (239)
Q Consensus 49 ~iF~~vqkkF~~~l~~lkk~kI~idp--~DpaAVk~YA~ 85 (239)
.-+.++++.|...=..+.=.-|++|| +.|+.+++|++
T Consensus 53 ~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~ 91 (170)
T 4hde_A 53 ANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQ 91 (170)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred HHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHH
Confidence 34566777776532234456789999 57999999983
No 22
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=23.78 E-value=1.5e+02 Score=22.60 Aligned_cols=102 Identities=11% Similarity=0.152 Sum_probs=61.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHH
Q 026384 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVE 150 (239)
Q Consensus 71 ~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~l~EiR~~Gl~D~~g~~a~mm~ALdkvE 150 (239)
++++.+.+.|+.=-..+ ..++--...+...+..-|+.++|+...+ ++....-. ..+|.||+.+=
T Consensus 2 ~lt~~~~~~Vk~sw~~v----------~~~~~g~~~~~rlF~~~P~~k~~F~~f~-----d~~~~~h~-~~v~~al~~~v 65 (136)
T 1gcv_B 2 HWTQEERDEISKTFQGT----------DMKTVVTQALDRMFKVYPWTNRYFQKRT-----DFRSSIHA-GIVVGALQDAV 65 (136)
T ss_dssp CCCHHHHHHHHHHHHHS----------CHHHHHHHHHHHHHHHSGGGGGGTTTCT-----TCCHHHHH-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHChHHHHHhhccc-----CCCccHHH-HHHHHHHHHHH
Confidence 45555555555544333 3455556677778888899999887532 11111222 33778888876
Q ss_pred HhhCCccccccHhhHHHHHHHHHHHHH-HcCCCCCChhhHHHHHHHHH
Q 026384 151 KEIKKPLMRNDKKGMALLTAEFDKINK-KLGIRKEDLPKYEEQLELKI 197 (239)
Q Consensus 151 K~igkpL~rsDkkGM~~L~ae~~kinK-klGi~~eDl~K~eee~ele~ 197 (239)
+.+.. +.-..+++...-. ++||+|+.++-+-+-+.--+
T Consensus 66 ~~ld~---------l~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l 104 (136)
T 1gcv_B 66 KHMDD---------VKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVEL 104 (136)
T ss_dssp HTTTC---------HHHHTHHHHHHHHHTTCCCGGGHHHHHHHHHHHH
T ss_pred HhHhh---------HHHHHHHHHHHhHHhhCCCHHHHHHHHHHHHHHH
Confidence 66643 3445555555555 49999999987655444333
No 23
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.89 E-value=2.6e+02 Score=22.53 Aligned_cols=56 Identities=27% Similarity=0.338 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHc-CCCCCChh---hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 026384 163 KGMALLTAEFDKINKKL-GIRKEDLP---KY----EEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE 225 (239)
Q Consensus 163 kGM~~L~ae~~kinKkl-Gi~~eDl~---K~----eee~ele~aK~ql~elK~~a~e~m~~~kkree~k~e 225 (239)
+..+-|..+|+.+.|.+ +++++|-. +- --+.+|+..+++|+.| =+-+.|++++.+.
T Consensus 13 ~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~l-------eeL~~ki~eL~~k 76 (125)
T 2pms_C 13 AKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKL-------EELSDKIDELDAE 76 (125)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHH
Confidence 44555666666666655 46655543 22 2478888888988888 2356678887755
No 24
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=21.35 E-value=1.7e+02 Score=22.24 Aligned_cols=103 Identities=9% Similarity=0.154 Sum_probs=58.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHH------HHHHHcCCCchhhhHHHHHH
Q 026384 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTL------KEIRERGLIDEHGAEAMMMD 144 (239)
Q Consensus 71 ~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~l------~EiR~~Gl~D~~g~~a~mm~ 144 (239)
++++.|.+.|+.--..+ ..++--.......+..-|+.|+|.... .+++... .--+=-..+|.
T Consensus 2 ~lt~~~~~~V~~sw~~v----------~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~~~--~~~~h~~~v~~ 69 (146)
T 3d1k_B 2 EWTDKERSIISDIFSHM----------DYDDIGPKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNA--NVAAHGIKVLH 69 (146)
T ss_dssp CCCHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHSGGGGGGGTTSSCCSSHHHHHHCH--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC----------ChHhHHHHHHHHHHHHCHhHHHHhcccccCCcHHHHhcCH--HHHHHHHHHHH
Confidence 34445555555444332 455555667777888889999988742 2222110 00011123667
Q ss_pred HHHHHHHhhCCccccccHhhHHHHHHHHHHHHHH-cCCCCCChhhHHHHHH
Q 026384 145 ALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKK-LGIRKEDLPKYEEQLE 194 (239)
Q Consensus 145 ALdkvEK~igkpL~rsDkkGM~~L~ae~~kinKk-lGi~~eDl~K~eee~e 194 (239)
||+.+=+.+. | +....+++..--.. +|++|+.++-+.+-+.
T Consensus 70 al~~~v~~ld------~---l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll 111 (146)
T 3d1k_B 70 GLDRGMKNMD------N---IADAYTDLSTLHSEKLHVDPDNFKLLSDCIT 111 (146)
T ss_dssp HTHHHHHTGG------G---HHHHTHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHhhh------h---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7777655542 2 55555666665555 9999999887655443
No 25
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=21.31 E-value=1.5e+02 Score=26.36 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=50.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHhhh
Q 026384 41 LKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIETRT 111 (239)
Q Consensus 41 ~kGdd~lK~iF~~vqkkF~~~l~~lkk~kI~idp~DpaAVk~YA~~~~~~r~k~gl~s~---------~e~I~~tie~~~ 111 (239)
+.|..+-+.|-.+++++...+ +..++.-|.+-.+||+ -.-|.......-+++|| |. ++.+...|+..-
T Consensus 4 ldGk~~a~~i~~~~~~~v~~l-~~~P~Lavilvg~dpa-S~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN 80 (276)
T 3ngx_A 4 LRGEEIAEKKAENLHGIIERS-GLEPSLKLIQIGDNEA-ASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLA 80 (276)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT-TCCCEEEEEEESCCHH-HHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEeCCCHH-HHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHc
Confidence 467778888888898888877 6666666666546665 56788888888899999 64 456777776654
Q ss_pred c
Q 026384 112 A 112 (239)
Q Consensus 112 ~ 112 (239)
.
T Consensus 81 ~ 81 (276)
T 3ngx_A 81 K 81 (276)
T ss_dssp H
T ss_pred C
Confidence 3
No 26
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=21.28 E-value=1.9e+02 Score=21.58 Aligned_cols=101 Identities=10% Similarity=0.083 Sum_probs=59.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHHHHHHH-HcCCCchhhhHHHHHHHHHHHH
Q 026384 72 IAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIR-ERGLIDEHGAEAMMMDALEKVE 150 (239)
Q Consensus 72 idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~l~EiR-~~Gl~D~~g~~a~mm~ALdkvE 150 (239)
++|.+-+.|+.=...+..- .++-........+..-|++|.|+.....-. ..| ..++.+|..+=
T Consensus 2 lt~~~~~~v~~sw~~v~~~--------~~~~~~~fy~rlf~~~P~~~~~F~~~~~~~~~q~--------~~l~~~l~~~v 65 (146)
T 2vhb_A 2 LDQQTINIIKATVPVLKEH--------GVTITTTFYKNLFAKHPEVRPLFDMGRQESLEQP--------KALAMTVLAAA 65 (146)
T ss_dssp CCHHHHHHHHHHHHHHHHT--------HHHHHHHHHHHHHHHCGGGGGGC--------CCC--------CCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHChHHHHhcCcchhhhhHHH--------HHHHHHHHHHH
Confidence 3445555565555444331 344445556667777899999987642211 222 24566666653
Q ss_pred HhhCCccccccHhhHHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 026384 151 KEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLE 194 (239)
Q Consensus 151 K~igkpL~rsDkkGM~~L~ae~~kinKklGi~~eDl~K~eee~e 194 (239)
+.+ +|...+.-....+...-.++||+|+.++-+-+-+.
T Consensus 66 ~~l------d~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll 103 (146)
T 2vhb_A 66 QNI------ENLPAILPAVKKIAVKHCQAGVAAAHYPIVGQELL 103 (146)
T ss_dssp HTG------GGGGGGHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred Hhc------cChHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 333 34456777778888888889999999976654443
No 27
>3lnr_A Aerotaxis transducer AER2; HAMP domain, poly-HAMP domains, signaling protein; 2.64A {Pseudomonas aeruginosa}
Probab=21.15 E-value=2.9e+02 Score=22.07 Aligned_cols=117 Identities=10% Similarity=0.108 Sum_probs=62.8
Q ss_pred HHhhhhh--cCC-ccCcchH--HHHHHHHHHHHHHHHHHhchhccccccCCCCHHHHHHHHHHHHHHHHh-cC--CC---
Q 026384 29 VRFFANE--AAP-QALKGDE--MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREK-AD--LF--- 97 (239)
Q Consensus 29 vR~fA~~--Aap-~~~kGdd--~lK~iF~~vqkkF~~~l~~lkk~kI~idp~DpaAVk~YA~~~~~~r~k-~g--l~--- 97 (239)
++..|.. ..+ +....|| -|...|...+...+.+++.++.. ..=+.....+...+... ++ +.
T Consensus 24 a~~IA~GDL~~~i~~~~~DEig~L~~al~~M~~~L~~~v~~i~~v--------~~l~~e~~~~a~~~~~Gdl~~R~d~~~ 95 (175)
T 3lnr_A 24 LQSFADGQLDTAVGEAPAPGYERLYDSLRALQRQLREQRAELQQV--------ESLEAGLAEMSRQHEAGWIDQTIPAER 95 (175)
T ss_dssp HHHHHTTCCSSCCCCCSSGGGHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCTTCCCCGGG
T ss_pred HHHHHCCCCCCCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCcccccCccc
Confidence 3445553 222 3333465 48889999999999988754410 01122222333332210 00 00
Q ss_pred ------ChHHHHHHHHHhhhcCCCcHHHHHHHHHHHH-HcCCCchhhhHHHHHHHHHHHHHhh
Q 026384 98 ------SESQRIAYTIETRTAGIPDARTYLLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEI 153 (239)
Q Consensus 98 ------s~~e~I~~tie~~~~~~~dvR~yL~~l~EiR-~~Gl~D~~g~~a~mm~ALdkvEK~i 153 (239)
.-.+-|..+++....+...+..++..+.+.- ..-++..-|-.+.+.++++.+=..+
T Consensus 96 ~~G~~~~l~~~vN~~~~~~~~~~~~~~~v~~~~a~GDl~~~i~~~~G~~~~lk~~lN~~~~~L 158 (175)
T 3lnr_A 96 LEGRAARIAKGVNELVAAHIAVKMKVVSVVTAYGQGNFEPLMDRLPGKKAQITEAIDGVRERL 158 (175)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCchhhhCCchHHHHHHHHHHHHHHH
Confidence 1123455666666666666666666666555 4455566777777777777654444
No 28
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=20.92 E-value=2.2e+02 Score=21.53 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=64.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcCCCcHHHHHHH-H-----HHHHHcCCCchhhhHHHHHH
Q 026384 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT-L-----KEIRERGLIDEHGAEAMMMD 144 (239)
Q Consensus 71 ~idp~DpaAVk~YA~~~~~~r~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~-l-----~EiR~~Gl~D~~g~~a~mm~ 144 (239)
+++|.+-+.|+.=-..+.. ...+--.......+..-|+.|.|... . .+++.. .+...=-..++.
T Consensus 3 ~Ls~~~~~~i~~sw~~v~~--------~~~~~g~~~y~~lF~~~P~~k~~F~~~f~~~~~~~l~~n--~~~~~h~~~v~~ 72 (152)
T 3pt8_B 3 GLTGPQKAALKSSWSRFMN--------NAVTNGTNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNH--PTMKAQSLVFCN 72 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHT--------THHHHHHHHHHHHHHHCGGGGGGGTTTTTTCCHHHHTTC--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh--------CHHhHHHHHHHHHHHHChhHHHHhhHHHcCCCHHHHhcC--HHHHHHHHHHHH
Confidence 3455555666555444432 22334445666777889999999875 2 121100 011112234777
Q ss_pred HHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 026384 145 ALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLE 194 (239)
Q Consensus 145 ALdkvEK~igkpL~rsDkkGM~~L~ae~~kinKklGi~~eDl~K~eee~e 194 (239)
+|+.+=+.+ +|...+.-....+..--.++||+|+.++-+-+-+.
T Consensus 73 ~l~~~v~~l------dd~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~ll 116 (152)
T 3pt8_B 73 GMSSFVDNL------DDHEVLVVLLQKMAKLHFNRGIRIKELRDGYGTLL 116 (152)
T ss_dssp HHHHHHTTT------TCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhC------CCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 887775554 45566777777888888889999988876654433
No 29
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.59 E-value=1.4e+02 Score=20.43 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=27.3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026384 181 IRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKR 219 (239)
Q Consensus 181 i~~eDl~K~eee~ele~aK~ql~elK~~a~e~m~~~kkr 219 (239)
++..|+.++.+|. |+--..+|..+|++.++|+.....|
T Consensus 4 ~~~~dle~~KqEI-L~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 4 SDYSDLQRVKQEL-LEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777765 4445678899999999998765444
No 30
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=20.21 E-value=3.8e+02 Score=22.50 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhchhccccccCCCCHHHHHHHH
Q 026384 51 FLDVKKKFETALGVLRKEKITIAPEDPAAVSQYA 84 (239)
Q Consensus 51 F~~vqkkF~~~l~~lkk~kI~idp~DpaAVk~YA 84 (239)
|.+....|..++..+++. +.++|+++.+...++
T Consensus 211 ~~~a~~~~~~A~~~~~~~-l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSL-LSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHHHHHHHHHHHH-HC--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-HHHCCCcchhhHHHH
Confidence 444456777777777654 377899887655444
Done!