BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026385
         (239 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
           Minimized Mean Structure
 pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
           Structures
          Length = 70

 Score =  106 bits (264), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 55/65 (84%)

Query: 96  KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILN 155
           K +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LN
Sbjct: 2   KGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 61

Query: 156 FPLEI 160
           FPL +
Sbjct: 62  FPLRV 66


>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
           Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
           Structure
          Length = 63

 Score =  106 bits (264), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 54/63 (85%)

Query: 98  RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 157
           +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 158 LEI 160
           L +
Sbjct: 61  LRV 63


>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
           Protein With Beta-Lactamase And Rhodanese Domains
 pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
           Protein With Beta-Lactamase And Rhodanese Domains
          Length = 474

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 23/59 (38%)

Query: 52  LVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGK 110
           LV K    L     +   V +PP     +R      D+  AD + +RH  G    PW K
Sbjct: 255 LVNKVGPRLLAELGAPERVDLPPERVRAWREGGVVLDVRPADAFAKRHLAGSLNIPWNK 313


>pdb|4F8T|A Chain A, Crystal Structure Of The Human Btn3a3 Ectodomain
          Length = 226

 Score = 26.9 bits (58), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 28/66 (42%)

Query: 129 TFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFE 188
             N   +  +  D  +   RGR +IL   +  G+ +L    V   D GK   Y ++ +F 
Sbjct: 49  VVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY 108

Query: 189 RKVAVK 194
            K  V+
Sbjct: 109 EKALVE 114


>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
           Complex With The 20.1 Single Chain Antibody
 pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
           Complex With The 20.1 Single Chain Antibody
 pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
           Complex With The 103.2 Single Chain Antibody
 pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
           Complex With The 103.2 Single Chain Antibody
          Length = 220

 Score = 26.9 bits (58), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 28/66 (42%)

Query: 129 TFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFE 188
             N   +  +  D  +   RGR +IL   +  G+ +L    V   D GK   Y ++ +F 
Sbjct: 49  VVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY 108

Query: 189 RKVAVK 194
            K  V+
Sbjct: 109 EKALVE 114


>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
          Length = 226

 Score = 26.9 bits (58), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 28/66 (42%)

Query: 129 TFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFE 188
             N   +  +  D  +   RGR +IL   +  G+ +L    V   D GK   Y ++ +F 
Sbjct: 49  VVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY 108

Query: 189 RKVAVK 194
            K  V+
Sbjct: 109 EKALVE 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,598,395
Number of Sequences: 62578
Number of extensions: 328598
Number of successful extensions: 1360
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 23
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)