Query 026385
Match_columns 239
No_of_seqs 220 out of 1181
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:21:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.4E-25 4.6E-30 162.7 6.3 62 99-160 2-63 (63)
2 1u3e_M HNH homing endonuclease 93.0 0.0023 7.8E-08 52.8 -5.4 59 78-141 86-146 (174)
3 3igm_B PF14_0633 protein; AP2 92.1 0.076 2.6E-06 39.8 2.4 28 95-125 3-31 (77)
4 1z1b_A Integrase; protein-DNA 79.8 2.1 7.1E-05 36.6 4.8 41 102-147 15-55 (356)
5 1b69_A Protein (integrase); in 32.4 41 0.0014 24.4 3.4 28 96-125 8-35 (69)
6 3jtz_A Integrase; four strande 29.7 48 0.0017 24.3 3.5 38 109-147 36-75 (88)
7 1x60_A Sporulation-specific N- 29.6 28 0.00097 24.0 2.2 23 123-145 46-68 (79)
8 2yy0_A C-MYC-binding protein; 29.0 12 0.0004 25.7 0.0 10 14-23 2-11 (53)
9 1uta_A FTSN, MSGA, cell divisi 24.5 38 0.0013 23.7 2.1 23 123-145 46-68 (81)
10 2ftc_I Mitochondrial ribosomal 22.2 1.1E+02 0.0038 23.8 4.5 37 109-149 78-115 (118)
11 2xvc_A ESCRT-III, SSO0910; cel 21.5 43 0.0015 23.7 1.8 23 1-23 1-23 (59)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=1.4e-25 Score=162.68 Aligned_cols=62 Identities=74% Similarity=1.347 Sum_probs=59.1
Q ss_pred eeeeeEECCCCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 026385 99 HYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI 160 (239)
Q Consensus 99 ~YRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFp~s~ 160 (239)
+||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||.++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 69999998999999999998877899999999999999999999999999999999999863
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=92.97 E-value=0.0023 Score=52.79 Aligned_cols=59 Identities=7% Similarity=-0.035 Sum_probs=38.1
Q ss_pred ccccccccchhhh--hcccCCCceeeeeEECCCCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHH
Q 026385 78 SIFRLKDEDKDLE--VADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYD 141 (239)
Q Consensus 78 ~~~~~~~~~~~~~--~~~~~~tS~YRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD 141 (239)
.|++|+...++.. ...... ..++||.....++|.+.|.+ + +.++||.|++.+|||++|.
T Consensus 86 ~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 86 TNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp GGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred HHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 3666666544432 222222 22567765333679999987 3 4677999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=92.13 E-value=0.076 Score=39.84 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=21.7
Q ss_pred CCCceeeeeEECCC-CeeEEEEecCCCCCcEE
Q 026385 95 YKERHYRGVRRRPW-GKYAAEIRDPNKKGTRV 125 (239)
Q Consensus 95 ~~tS~YRGV~~r~~-GKW~A~I~~~~~~Gkri 125 (239)
..+|+|+||++.+. +.|.|.-.. +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence 35799999997766 999999998 45543
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=79.81 E-value=2.1 Score=36.55 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=31.4
Q ss_pred eeEECCCCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHh
Q 026385 102 GVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKM 147 (239)
Q Consensus 102 GV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl 147 (239)
||++++.|.|+.++.. +|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 6777778999987665 688899996 8888877776655554
No 5
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=32.41 E-value=41 Score=24.37 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=21.6
Q ss_pred CCceeeeeEECCCCeeEEEEecCCCCCcEE
Q 026385 96 KERHYRGVRRRPWGKYAAEIRDPNKKGTRV 125 (239)
Q Consensus 96 ~tS~YRGV~~r~~GKW~A~I~~~~~~Gkri 125 (239)
+.--+.|++++..|+|++++.+. .|++.
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d~--~Gkr~ 35 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYIDS--FGEPQ 35 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEECT--TSSEE
T ss_pred CCccCCCeEEccCCcEEEEEEcC--CCCEE
Confidence 34557899999999999999985 35553
No 6
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=29.74 E-value=48 Score=24.28 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=27.2
Q ss_pred CeeEEEEecCCCCCcEEecCCCC--CHHHHHHHHHHHHHHh
Q 026385 109 GKYAAEIRDPNKKGTRVWLGTFN--TAVEAAKAYDNAAFKM 147 (239)
Q Consensus 109 GKW~A~I~~~~~~Gkri~LGtFd--T~EEAArAYD~AA~kl 147 (239)
..|.-+.+... +-+++-||.|. |..+|....+.+...+
T Consensus 36 K~w~~ryr~~G-k~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRISG-KESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEETT-EEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCC-eEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 35888888632 23578899997 5788877777766655
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.59 E-value=28 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=19.0
Q ss_pred cEEecCCCCCHHHHHHHHHHHHH
Q 026385 123 TRVWLGTFNTAVEAAKAYDNAAF 145 (239)
Q Consensus 123 kri~LGtFdT~EEAArAYD~AA~ 145 (239)
-+|++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47999999999999988776554
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.96 E-value=12 Score=25.70 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred chHHHHHHhh
Q 026385 14 LTLERISQYL 23 (239)
Q Consensus 14 s~l~~I~~hl 23 (239)
.+|++|+|||
T Consensus 2 ~AlefIk~~L 11 (53)
T 2yy0_A 2 SALDFLKHHL 11 (53)
T ss_dssp ----------
T ss_pred cHHHHHHHHc
Confidence 5899999997
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=24.49 E-value=38 Score=23.73 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=19.1
Q ss_pred cEEecCCCCCHHHHHHHHHHHHH
Q 026385 123 TRVWLGTFNTAVEAAKAYDNAAF 145 (239)
Q Consensus 123 kri~LGtFdT~EEAArAYD~AA~ 145 (239)
-||.+|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47999999999999988776554
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=22.18 E-value=1.1e+02 Score=23.82 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=28.6
Q ss_pred CeeEEEEecCCCCCcEEe-cCCCCCHHHHHHHHHHHHHHhcC
Q 026385 109 GKYAAEIRDPNKKGTRVW-LGTFNTAVEAAKAYDNAAFKMRG 149 (239)
Q Consensus 109 GKW~A~I~~~~~~Gkri~-LGtFdT~EEAArAYD~AA~kl~G 149 (239)
-.|.|.|.. |+-++ ++...+++.|..|..+|+.||-+
T Consensus 78 ~~wva~Vk~----G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 78 DHYVTPVKA----GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred cEEEEEECC----CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 459999986 55543 55558899999999999998754
No 11
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.52 E-value=43 Score=23.73 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=17.6
Q ss_pred CCCCCCCCCccccchHHHHHHhh
Q 026385 1 MAAGHHHHQDHEALTLERISQYL 23 (239)
Q Consensus 1 ~~~~~~~~~~~e~s~l~~I~~hl 23 (239)
||--||||--.|.-.|+.||+..
T Consensus 1 ~~~~~~~~~~~e~~lL~yIr~sG 23 (59)
T 2xvc_A 1 MAHHHHHHMITERELLDYIVNNG 23 (59)
T ss_dssp ---CCCSCCCCHHHHHHHHHHTT
T ss_pred CCccchhhhccHHHHHHHHHHcC
Confidence 78888899889999999999873
Done!