BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026386
MALQICLALSISSHNSLNHSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFV
LILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNN
LGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEY
KVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT

High Scoring Gene Products

Symbol, full name Information P value
AT2G28605 protein from Arabidopsis thaliana 3.2e-58

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026386
        (239 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2828415 - symbol:AT2G28605 species:3702 "Arabi...   598  3.2e-58   1


>TAIR|locus:2828415 [details] [associations]
            symbol:AT2G28605 species:3702 "Arabidopsis thaliana"
            [GO:0005509 "calcium ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009523 "photosystem II"
            evidence=IEA] [GO:0009654 "oxygen evolving complex" evidence=IEA]
            [GO:0015979 "photosynthesis" evidence=IEA] [GO:0019898 "extrinsic
            to membrane" evidence=IEA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0009965 "leaf morphogenesis" evidence=RCA] [GO:0030154 "cell
            differentiation" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] InterPro:IPR002683
            Pfam:PF01789 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0019898 GO:GO:0005509 GO:GO:0009579 GO:GO:0015979
            GO:GO:0009543 EMBL:AC007171 Gene3D:3.40.1000.10 InterPro:IPR016123
            SUPFAM:SSF55724 GO:GO:0009654 EMBL:AY072442 EMBL:AY128884
            IPI:IPI00520894 RefSeq:NP_850123.1 UniGene:At.38598 HSSP:P18212
            ProteinModelPortal:Q8VY52 SMR:Q8VY52 STRING:Q8VY52 PaxDb:Q8VY52
            PRIDE:Q8VY52 EnsemblPlants:AT2G28605.1 GeneID:817409
            KEGG:ath:AT2G28605 TAIR:At2g28605 eggNOG:NOG300660
            HOGENOM:HOG000006006 InParanoid:Q8VY52 OMA:FEYKIDS PhylomeDB:Q8VY52
            ProtClustDB:CLSN2690972 Genevestigator:Q8VY52 Uniprot:Q8VY52
        Length = 232

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 120/179 (67%), Positives = 143/179 (79%)

Query:    61 LILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNN 120
             L  NG     +KA   EE  LQRYTDSN GFTLL PSS+ KV+KAGA  LFEE N G+NN
Sbjct:    58 LFFNGFLLD-NKAKSMEE--LQRYTDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNN 114

Query:   121 LGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEY 180
             +GVVV+PVR+ SL +FG+PQFVADKLI AEKRKEST + E++   ER+G G  +VYEFEY
Sbjct:   115 IGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTKEAEVVSVGERAGLGQ-QVYEFEY 173

Query:   181 KVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPTT 239
             K+DS+RGG+KR+FSAAFV+S KLYLLN+ HSDKPE+PLD+ TRM LE+VLHSFDA P T
Sbjct:   174 KIDSTRGGIKRVFSAAFVSSNKLYLLNVVHSDKPENPLDSSTRMSLEQVLHSFDALPLT 232


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      239       198   0.00083  111 3  11 22  0.37    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.92u 0.22s 17.14t   Elapsed:  00:00:01
  Total cpu time:  16.92u 0.22s 17.14t   Elapsed:  00:00:01
  Start:  Fri May 10 11:08:59 2013   End:  Fri May 10 11:09:00 2013

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