BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026386
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 253 bits (647), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 150/194 (77%), Gaps = 4/194 (2%)
Query: 46 SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
S+ LSKR L LS L NG S+ E LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43 SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99
Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGAS 165
GA LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRKEST + E++
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRKESTKEAEVVSVG 159
Query: 166 ERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMM 225
ER+G G +VYEFEYK+DS+RGG+KR+FSAAFV+S KLYLLN+ HSDKPE+PLD+ TRM
Sbjct: 160 ERAGLGQ-QVYEFEYKIDSTRGGIKRVFSAAFVSSNKLYLLNVVHSDKPENPLDSSTRMS 218
Query: 226 LEEVLHSFDAAPTT 239
LE+VLHSFDA P T
Sbjct: 219 LEQVLHSFDALPLT 232
>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus
pseudonarcissus GN=PSBP PE=2 SV=1
Length = 265
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 85 TDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTP-Q 140
T + +GF +L PS W +V+ G + +E+ T+N+GV+VNP S+ ++G+P Q
Sbjct: 99 TVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQ 158
Query: 141 FVAD------------KLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVDSSRG- 187
F++ K I + + + T I + GG Y ++ G
Sbjct: 159 FLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGD 218
Query: 188 -GLKRIFSAAFVASKKLYLLNITHSDK 213
G K + A V+ KLY+ DK
Sbjct: 219 EGGKHLLITATVSDGKLYICKAQAGDK 245
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 19 HSPMSSSPSTLISFSVQTKKKTVVELSSLRLSKRELCLSSFVLILNGLYPKLSKASLPEE 78
S S+ P + ++ + T K V + ++ + + L+++GL +S+A+LP
Sbjct: 52 QSAKSAKPESPVAINCLTDAKQVCAVGR----RKSMMMG---LLMSGLI--VSQANLPTA 102
Query: 79 ME----LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGV---VVNPVRVA 131
+ Y D+ +G++ P +WI+V AGA + F + NL V +
Sbjct: 103 FASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYT 162
Query: 132 SLGEFGTPQFVADKLIQ 148
SL + G+P+ V ++++
Sbjct: 163 SLEDLGSPEEVGKRVLR 179
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 22/155 (14%)
Query: 78 EMELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLG 134
+ + Q Y + +GF L PS W +V+ G + FE+ T+N+ V + P S+
Sbjct: 94 DTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSIT 151
Query: 135 EFGTP-QFVA--DKLI--QAEKRK---ESTIDTELIGASE----RSGHGGLKVYEF---- 178
+FG+P QF++ D L+ QA K E +++ + + S G K Y +
Sbjct: 152 DFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVL 211
Query: 179 EYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDK 213
D + GG ++ +A V KLY+ DK
Sbjct: 212 TRTADGNEGGKHQLITAT-VNDGKLYICKAQAGDK 245
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 20/146 (13%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ--- 140
+ +GF LL P+ W +V+ G + +E+ T+N+ V V P S+ ++GTP+
Sbjct: 100 TGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFL 159
Query: 141 -----FVADKLIQAEKRKESTIDTELIGAS---ERSGH--GGLKVYEFEY---KVDSSRG 187
+ + + E D + + + E S GG + Y D G
Sbjct: 160 STVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEG 219
Query: 188 GLKRIFSAAFVASKKLYLLNITHSDK 213
G + SA V KLY+ DK
Sbjct: 220 GKHHVISAT-VTDGKLYICKAQAGDK 244
>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana
tabacum GN=PSBP3 PE=2 SV=1
Length = 266
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 22/155 (14%)
Query: 78 EMELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLG 134
+ + Q Y + +GF L PS W +V+ G + FE+ T+N+ V + P S+
Sbjct: 95 DTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSIT 152
Query: 135 EFGTP-QFVA--DKLI--QAEKRK---ESTIDTELIGASE----RSGHGGLKVYEF---- 178
+FG+P QF++ D L+ QA K E +++ + + + G K Y +
Sbjct: 153 DFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSIL 212
Query: 179 EYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDK 213
D + GG ++ +A V KLY+ DK
Sbjct: 213 TRTADGNEGGKHQLVTAT-VNDGKLYICKAQAGDK 246
>sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum
aestivum GN=PSBP PE=2 SV=1
Length = 258
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
S EGF L+ P+ W + + G + +E+ T+NL V++NP ++ ++G+P+
Sbjct: 95 SGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPE 151
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSWIKVDKA---GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF LL PS W + G + +E+ T+NL V+V P S+ +FG+P+
Sbjct: 103 NGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPE 159
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 20/146 (13%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ--- 140
+ +GF + P+ W +++ G + FE+ T+NL V+V P S+ ++G+P+
Sbjct: 99 NGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFL 158
Query: 141 -----FVADKLIQAEKRKESTIDTELIGAS---ERSGH--GGLKVYEFEY---KVDSSRG 187
+ + E E D + + E S GG Y D G
Sbjct: 159 SQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEG 218
Query: 188 GLKRIFSAAFVASKKLYLLNITHSDK 213
G ++ +A V KLY+ DK
Sbjct: 219 GKHQLITAT-VNGGKLYICKAQAGDK 243
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 20/146 (13%)
Query: 87 SNEGFTLLRPSSWIKVDK---AGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ--- 140
S +GF L PS W + G + +E+ +NL V++NP S+ +FG+P+
Sbjct: 99 SGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFL 158
Query: 141 -----FVADKLIQAEKRKESTIDTELIG--------ASERSGHGGLKVYEFEYKVDSSRG 187
+ + + E D + + AS +G V D G
Sbjct: 159 SKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEG 218
Query: 188 GLKRIFSAAFVASKKLYLLNITHSDK 213
G ++ +A V KLY+ DK
Sbjct: 219 GKHQLITAT-VNDGKLYICKAQAGDK 243
>sp|P11471|PSBP_CHLRE Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas
reinhardtii GN=PSBP PE=2 SV=1
Length = 245
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 20/147 (13%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ--- 140
+ +GF LL P+ W + D G + +E+ NNL V+ ++ +FG+
Sbjct: 79 AGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFL 138
Query: 141 -----FVADKLIQAEKRKESTID------TELIGASERSGHGGLKVYEFEYKV---DSSR 186
+ + E + E L+ S + G Y++E V D
Sbjct: 139 ESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDE 198
Query: 187 GGLKRIFSAAFVASKKLYLLNITHSDK 213
GG ++ A + KLY++ I DK
Sbjct: 199 GGRHQLIGATVGSDNKLYIIKIQIGDK 225
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
S +GF + P+ W +V+ G + +E+ T+NL V+V P S+ ++G+P+
Sbjct: 96 SGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPE 152
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 80 ELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
E +YT GF L P+ W +V+ G + +E+ T+NL V+V P ++ ++
Sbjct: 94 EFSQYT--GPGFKLSVPAKWNPSKEVEYPGQVLRYEDNFDTTSNLAVMVTPTDKKAITDY 151
Query: 137 GTPQ 140
G P+
Sbjct: 152 GAPE 155
>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
lycopersicum GN=PSBP PE=2 SV=1
Length = 258
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF L P+ W +V+ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 94 NGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150
>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum
GN=PSBP PE=1 SV=1
Length = 259
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 23/169 (13%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ--- 140
+ +GF LL P+ W + + G + +E+ T+N+ V+V S+ ++G+P+
Sbjct: 95 NGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFL 154
Query: 141 -----FVADKLIQAEKRKESTIDTELIGAS---ERSGH--GGLKVYEFEY---KVDSSRG 187
+ + + E DT + + E S GG + Y D G
Sbjct: 155 SKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEG 214
Query: 188 GLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236
G ++ +A V KLY+ DK R +E+ SF A
Sbjct: 215 GKHQLITAT-VKDGKLYICKAQAGDK---RWFKGARKFVEDTASSFSVA 259
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSWI---KVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF + P+ W +V+ G + +E+ T+NL V+V P S+ ++G+P+
Sbjct: 53 NGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPE 109
>sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster
GN=abs PE=1 SV=1
Length = 619
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 146 LIQAEKRKESTIDTE---LIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKK 202
LI AEK+++ E L G + HGG E VD+ R G K + A VASK
Sbjct: 432 LIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKG 491
Query: 203 LYLLNITHSDKPESPLD 219
L N+ H + P D
Sbjct: 492 LDFPNVQHVINYDMPDD 508
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
tuberosum GN=PSBP PE=2 SV=1
Length = 260
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF L P+ W +++ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 96 NGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPE 152
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana
tabacum GN=PSBP1 PE=3 SV=2
Length = 268
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF L P+ W +V+ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 104 NGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPE 160
>sp|Q6C161|EIF3A_YARLI Eukaryotic translation initiation factor 3 subunit A OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF32 PE=3 SV=1
Length = 955
Score = 30.8 bits (68), Expect = 9.5, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 100 IKVDKAGATVLFEEANKGTNNLGVVVNPVRV--ASLGEFGTPQFVADKLIQAEKRKESTI 157
IK+D +VLFEE T + + P+ + L G VAD L AE R++ +
Sbjct: 482 IKIDHDQRSVLFEEVRAATGSASLQDTPIEIVRTQLSRLGRTLSVADPLNSAEAREQQYV 541
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,673,318
Number of Sequences: 539616
Number of extensions: 3332200
Number of successful extensions: 6591
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6581
Number of HSP's gapped (non-prelim): 24
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)