Query 026386
Match_columns 239
No_of_seqs 159 out of 292
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:22:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 8E-50 1.7E-54 353.9 19.6 186 46-236 74-285 (286)
2 PLN00042 photosystem II oxygen 100.0 3.1E-44 6.7E-49 318.6 20.3 185 46-236 47-260 (260)
3 PF01789 PsbP: PsbP; InterPro 100.0 1E-41 2.2E-46 288.3 15.0 153 78-236 20-175 (175)
4 PLN00067 PsbP domain-containin 100.0 3.9E-38 8.5E-43 279.2 18.2 180 46-235 40-263 (263)
5 PLN00066 PsbP domain-containin 100.0 1.7E-34 3.8E-39 257.7 17.9 175 46-236 42-259 (262)
6 PLN03152 hypothetical protein; 100.0 2.9E-30 6.3E-35 224.1 13.4 173 45-236 27-241 (241)
7 PF08786 DUF1795: Domain of un 98.1 0.00028 6.1E-09 56.5 15.1 125 92-233 3-130 (130)
8 COG5435 Uncharacterized conser 95.6 0.75 1.6E-05 38.5 14.1 132 92-238 10-144 (147)
9 PRK11615 hypothetical protein; 94.9 2 4.3E-05 37.2 14.8 132 88-235 47-184 (185)
10 PF12712 DUF3805: Domain of un 94.5 1.7 3.8E-05 36.2 12.9 131 81-236 1-131 (153)
11 PF10738 Lpp-LpqN: Probable li 87.8 14 0.0003 31.7 11.9 132 90-236 32-174 (175)
12 PF07174 FAP: Fibronectin-atta 85.0 25 0.00054 32.5 12.5 140 82-234 110-283 (297)
13 COG4784 Putative Zn-dependent 74.4 26 0.00056 33.8 9.3 24 82-105 288-311 (479)
14 PF10518 TAT_signal: TAT (twin 68.2 5.5 0.00012 23.6 2.2 20 49-68 2-21 (26)
15 TIGR02811 formate_TAT formate 46.0 18 0.00038 26.2 2.2 15 46-60 6-20 (66)
16 PF12318 FAD-SLDH: Membrane bo 41.6 18 0.00039 30.7 1.9 8 48-55 1-8 (168)
17 PF08006 DUF1700: Protein of u 38.6 18 0.00038 30.5 1.4 18 133-150 47-64 (181)
18 TIGR01409 TAT_signal_seq Tat ( 30.1 72 0.0016 19.0 2.8 18 49-66 1-18 (29)
19 PF12559 Inhibitor_I10: Serine 27.9 24 0.00053 24.9 0.4 12 90-101 44-55 (56)
20 PLN02999 photosystem II oxygen 27.8 32 0.00068 30.0 1.2 42 46-91 38-79 (190)
21 smart00564 PQQ beta-propeller 27.4 71 0.0015 18.5 2.5 21 197-220 12-32 (33)
22 PF01344 Kelch_1: Kelch motif; 26.4 79 0.0017 19.8 2.7 20 191-210 2-21 (47)
23 PF13964 Kelch_6: Kelch motif 25.9 63 0.0014 20.9 2.2 20 191-210 2-21 (50)
24 PF05984 Cytomega_UL20A: Cytom 21.8 66 0.0014 24.8 1.8 19 50-68 2-20 (100)
25 PF05137 PilN: Fimbrial assemb 21.8 2.2E+02 0.0047 19.8 4.6 44 138-183 34-77 (78)
26 PLN00017 photosystem I reactio 21.0 51 0.0011 25.3 1.1 23 42-64 46-68 (90)
27 PRK07474 sulfur oxidation prot 20.0 83 0.0018 26.5 2.3 33 171-208 110-143 (154)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=8e-50 Score=353.87 Aligned_cols=186 Identities=20% Similarity=0.345 Sum_probs=162.6
Q ss_pred cccchhhHHHHHHHHHHHhh-hCCCCCCCCCccccCceecccCCCCeEEecCCCCeeccccCceEEEeeCCCCCccEEEE
Q 026386 46 SLRLSKRELCLSSFVLILNG-LYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVV 124 (239)
Q Consensus 46 ~~~~~RR~lll~~~~~~~~~-~~~~~~~~~~A~~~g~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVv 124 (239)
.+.+.||++|+-.+.++..+ +..+.+ .++|+..||+.|+|+.|||+|+||.||++|++.|+|++|+|+++.+|||+|+
T Consensus 74 ~~~~~rr~~~~~~l~~~~~~~s~~~~~-~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVSV~ 152 (286)
T PLN00059 74 VCAVGRRKSMMMGLLMSGLIVSEANLP-TAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVE 152 (286)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhcCc-hhhcCCcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceEEE
Confidence 57889999976444322232 222222 4577778999999999999999999999999999999999999999999999
Q ss_pred EecCC---CCCcccCCCHHHHHHHHHHH-hhc-----cCCCcceeEEeceeeecCCCcEEEEEEEEEecCC---------
Q 026386 125 VNPVR---VASLGEFGTPQFVADKLIQA-EKR-----KESTIDTELIGASERSGHGGLKVYEFEYKVDSSR--------- 186 (239)
Q Consensus 125 Ispv~---~~sl~dfGsp~eVa~~Ll~~-~~~-----~~sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~--------- 186 (239)
|+|+. +++|+|||+|+|||++|+++ +++ .+++++++||++.+|++.||++||+|||.++++.
T Consensus 153 ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~ 232 (286)
T PLN00059 153 FSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMP 232 (286)
T ss_pred EecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccc
Confidence 99885 89999999999999999999 565 5778999999999998779999999999999962
Q ss_pred ------CCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386 187 ------GGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236 (239)
Q Consensus 187 ------~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~ 236 (239)
-+|.||++++ +|.|||||||++|+ ||+||+|++ +.|++|++||+|.
T Consensus 233 qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qt---pE~RW~kvk-~~f~~V~dSF~V~ 285 (286)
T PLN00059 233 QDRVARLEWNRRYLAVLGVENDRLYSIRLQT---PEKVFLEEE-KDLRRVMDSFRVE 285 (286)
T ss_pred cccccccccceeeEEEEEEeCCEEEEEEcCC---cHHHHHHHH-HHHHHHHhheeec
Confidence 0379999999 99999999999999 999999999 8999999999985
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=3.1e-44 Score=318.63 Aligned_cols=185 Identities=23% Similarity=0.298 Sum_probs=150.0
Q ss_pred cccchhhHHHHHHHHHHHhhhCCCCCCCCCccc----------cCceecccCCCCeEEecCCCCeecc---ccCceEEEe
Q 026386 46 SLRLSKRELCLSSFVLILNGLYPKLSKASLPEE----------MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFE 112 (239)
Q Consensus 46 ~~~~~RR~lll~~~~~~~~~~~~~~~~~~~A~~----------~g~~~y~D~~~gYsf~yP~~W~~v~---~~G~dv~F~ 112 (239)
...++||.+|+.++..++.++...-.+++.+++ .||.+|. .|||+|+||.+|++++ .+|+|++|+
T Consensus 47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~ 124 (260)
T PLN00042 47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFE 124 (260)
T ss_pred cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEee
Confidence 466788888765543333223222122333332 6999997 4999999999999665 569999999
Q ss_pred eCCCCCccEEEEEecCCCCCcccCCCHHH----HHHHHHHH-hhcc---CCCc------ceeEEeceeeecCCCcEEEEE
Q 026386 113 EANKGTNNLGVVVNPVRVASLGEFGTPQF----VADKLIQA-EKRK---ESTI------DTELIGASERSGHGGLKVYEF 178 (239)
Q Consensus 113 d~~~~~~nVsVvIspv~~~sl~dfGsp~e----Va~~Ll~~-~~~~---~sg~------~a~ll~a~er~~~dG~~YY~~ 178 (239)
|+++.++||+|+|+|+++++|+|||+|+| |++.|.++ ++.+ ++|+ .++||++++|+. ||++||+|
T Consensus 125 D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~-dGk~YY~l 203 (260)
T PLN00042 125 DNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEV-GGKPYYYL 203 (260)
T ss_pred ccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEe-CCeEEEEE
Confidence 99999999999999999999999999999 67777776 4544 5565 579999999987 99999999
Q ss_pred EEEEecCCC-CcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386 179 EYKVDSSRG-GLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236 (239)
Q Consensus 179 Ey~v~s~~~-~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~ 236 (239)
||.++.+++ ++.||.+++ +|.|||||||++|+ ||+||.|+.++.|++|++||+|.
T Consensus 204 E~~~~~ad~d~~~RH~LatatV~~GkLYtl~aqa---~EkRW~K~~~k~l~~v~~SFsVa 260 (260)
T PLN00042 204 SVLTRTADGDEGGKHQLITATVSDGKLYICKAQA---GDKRWFKGARKFVEGAASSFSVA 260 (260)
T ss_pred EEEEecCCCCCCCceEEEEEEEECCEEEEEEecC---chhhhhHHHHHHHHHHHhceecC
Confidence 999999863 457888877 99999999999999 99999998537899999999984
No 3
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00 E-value=1e-41 Score=288.34 Aligned_cols=153 Identities=38% Similarity=0.578 Sum_probs=139.1
Q ss_pred ccCceecccCCCCeEEecCCCCeeccccCceEEEeeCCCCCccEEEEEecCCCC-CcccCCCHHHHHHHHHHH-hhccCC
Q 026386 78 EMELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVA-SLGEFGTPQFVADKLIQA-EKRKES 155 (239)
Q Consensus 78 ~~g~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVvIspv~~~-sl~dfGsp~eVa~~Ll~~-~~~~~s 155 (239)
..||++|.|+.+||+|.||.+|+++++.|++++|+|+.+..+||+|+|+|++.. +|+|||+|++||++|+++ ..++++
T Consensus 20 ~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~~~~~~~~~~ 99 (175)
T PF01789_consen 20 STGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLLNGELASPGS 99 (175)
T ss_dssp -SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHHHHCCCHCTS
T ss_pred CCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHhhhhcccccC
Confidence 379999999999999999999999999999999999999999999999999855 999999999999999999 566777
Q ss_pred CcceeEEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccc
Q 026386 156 TIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFD 234 (239)
Q Consensus 156 g~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~ 234 (239)
++.++||++.+|+. +|++||+|||.++.+++ ..||.+++ ++.+||||+|++|+ ||+||++++ +.|++|++||+
T Consensus 100 ~~~a~li~a~~~~~-~g~~yY~~Ey~~~~~~~-~~rh~l~~~tv~~g~lY~l~~~a---~e~~w~k~~-~~l~~iv~SF~ 173 (175)
T PF01789_consen 100 GREAELISASEREV-DGKTYYEYEYTVQSPNE-GRRHNLAVVTVKNGKLYTLTAQA---PESRWDKVE-PKLRKIVDSFR 173 (175)
T ss_dssp SEEEEEEEEEEEEE-TTEEEEEEEEEEEETTE-EEEEEEEEEEEETTEEEEEEEEE---EHHHHHTCH-HHHHHHHHC-E
T ss_pred CcceEEEEeeeeec-CCccEEEEEEEeccCCC-cccEEEEEEEEECCEEEEEEEEc---CHHHHHHHH-HHHHHHHhcEE
Confidence 78999999999998 79999999999999873 57888877 99999999999999 999999999 89999999999
Q ss_pred cc
Q 026386 235 AA 236 (239)
Q Consensus 235 v~ 236 (239)
|.
T Consensus 174 v~ 175 (175)
T PF01789_consen 174 VY 175 (175)
T ss_dssp E-
T ss_pred eC
Confidence 73
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=100.00 E-value=3.9e-38 Score=279.21 Aligned_cols=180 Identities=20% Similarity=0.305 Sum_probs=144.4
Q ss_pred cccchhhHHHHHHHHHHHhhhCCCCCCCC--------Ccc---ccCceecc-----------cCCCCeEEecCCCCeecc
Q 026386 46 SLRLSKRELCLSSFVLILNGLYPKLSKAS--------LPE---EMELQRYT-----------DSNEGFTLLRPSSWIKVD 103 (239)
Q Consensus 46 ~~~~~RR~lll~~~~~~~~~~~~~~~~~~--------~A~---~~g~~~y~-----------D~~~gYsf~yP~~W~~v~ 103 (239)
.....||++|+++.++.+.+.....+..+ ++. ..||-.|. +...||+|+||.+|++++
T Consensus 40 ~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~ 119 (263)
T PLN00067 40 AVVIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTR 119 (263)
T ss_pred cchhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcc
Confidence 34567999999887643322221111000 111 14777774 345699999999999988
Q ss_pred cc----C-----------ceEEEeeCCCCCccEEEEEecC------CCCCcccCCCHHHHHHHHHHHhhccCCCcceeEE
Q 026386 104 KA----G-----------ATVLFEEANKGTNNLGVVVNPV------RVASLGEFGTPQFVADKLIQAEKRKESTIDTELI 162 (239)
Q Consensus 104 ~~----G-----------~dv~F~d~~~~~~nVsVvIspv------~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll 162 (239)
++ | +|++|+|. .++||+|+|+|+ ..++|+|||+|++|+++|...+.. ++++..+||
T Consensus 120 Vs~~~sGnycqp~c~~p~~dv~F~D~--~dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g-~~~~~~eLL 196 (263)
T PLN00067 120 VANILSGNYCQPKCAEPWVEVKFEDE--KQGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTG-NSYDPDELL 196 (263)
T ss_pred ccccccCccccccccCCCceEEEeCC--CCCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhc-CCCCCcceE
Confidence 75 4 89999994 478999999997 368999999999999999887433 456788999
Q ss_pred eceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhcccc
Q 026386 163 GASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDA 235 (239)
Q Consensus 163 ~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v 235 (239)
++.+|+. ||++||+|||.++.++ +.||.+++ +|++||||||++|+ +|+||.|++ +.|++|++||+|
T Consensus 197 eAs~re~-dGktYY~~E~~tp~a~--~gRHnLataTV~~GkLYtf~asa---nEkRW~K~k-~~l~~V~dSFsV 263 (263)
T PLN00067 197 ETSVEKI-GDQTYYKYVLETPFAL--TGSHNLAKATAKGNTVVLFVVSA---SDKQWQSSE-KTLKAILDSFQA 263 (263)
T ss_pred EeeeEee-CCeEEEEEEEEecCCC--CCceEEEEEEEECCEEEEEEecC---CHHHHHHHH-HHHHHHHHhccC
Confidence 9999997 9999999999999987 57888877 99999999999999 999999999 899999999986
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=100.00 E-value=1.7e-34 Score=257.74 Aligned_cols=175 Identities=21% Similarity=0.297 Sum_probs=139.5
Q ss_pred cccchhhHHHHHHHHHHHh--hhCCCCCCC-------------CCccccCceecccCC-------------CCeEEecCC
Q 026386 46 SLRLSKRELCLSSFVLILN--GLYPKLSKA-------------SLPEEMELQRYTDSN-------------EGFTLLRPS 97 (239)
Q Consensus 46 ~~~~~RR~lll~~~~~~~~--~~~~~~~~~-------------~~A~~~g~~~y~D~~-------------~gYsf~yP~ 97 (239)
...++||.+|+++++++.. +++|....+ +-+.+.||++|..+. ..|+|+||.
T Consensus 42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~ 121 (262)
T PLN00066 42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQ 121 (262)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCC
Confidence 4557999999977665222 233321110 113346899997654 589999999
Q ss_pred CCeecccc-----CceEEEeeCCCCCccEEEEEecC--------CCCCcccCCCHHHHHHHHHHH-hhccCCCcceeEEe
Q 026386 98 SWIKVDKA-----GATVLFEEANKGTNNLGVVVNPV--------RVASLGEFGTPQFVADKLIQA-EKRKESTIDTELIG 163 (239)
Q Consensus 98 ~W~~v~~~-----G~dv~F~d~~~~~~nVsVvIspv--------~~~sl~dfGsp~eVa~~Ll~~-~~~~~sg~~a~ll~ 163 (239)
+|+++.++ |+++.|++.++.++||+|+|+|+ .+++|+|||+|++|++.|... +... .+.++|++
T Consensus 122 GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~--~~e~eLl~ 199 (262)
T PLN00066 122 GWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEP--VEEGKVLS 199 (262)
T ss_pred CCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCC--ccccceeE
Confidence 99998875 76677776668899999999998 478999999999999999987 3433 36789999
Q ss_pred ceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386 164 ASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236 (239)
Q Consensus 164 a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~ 236 (239)
+.+++. ||++||+||| . ||.+++ ||.+||||||++|+ ||+||.|++ +.|++|++||+|.
T Consensus 200 a~~re~-dGktYY~~E~-----~----rH~LasaTV~~GrLYt~~asa---pe~rW~k~~-~~lr~v~dSF~V~ 259 (262)
T PLN00066 200 MEVAEH-SGRTYYQFEL-----P----PHTLVTATAAGNRVYIFSVTA---NGLQWKRHY-KDLKRIAKSFRVV 259 (262)
T ss_pred eeeeec-CCcEEEEEEE-----e----CceEEEEEEECCEEEEEEeec---chHhhHHHH-HHHHHHhhceeee
Confidence 999887 9999999999 1 455554 99999999999999 999999999 8999999999984
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=224.10 Aligned_cols=173 Identities=21% Similarity=0.315 Sum_probs=124.5
Q ss_pred ccccchhhHHHHHHHHHHH-hhh-CCCCCCC-------------CCccccCceecccCCCCeEEecCCCCeecccc----
Q 026386 45 SSLRLSKRELCLSSFVLIL-NGL-YPKLSKA-------------SLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA---- 105 (239)
Q Consensus 45 ~~~~~~RR~lll~~~~~~~-~~~-~~~~~~~-------------~~A~~~g~~~y~D~~~gYsf~yP~~W~~v~~~---- 105 (239)
+.++.+||+.++-...+.+ +++ ...++.+ .+|++..|-.|. ++||++.||.++....++
T Consensus 27 ~~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~--g~gf~~~~pp~f~di~e~~~~~ 104 (241)
T PLN03152 27 SRCGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFY--GDGFSIRVPPSFEDIMEPEDYN 104 (241)
T ss_pred ccccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhh--CCceEEeCCCChhhhcChhhcc
Confidence 3578889999875433221 111 1111100 123444454444 799999999999886532
Q ss_pred ------C-------ceEEEeeCCCCCccEEEEEecCC--------CCCcccCCCHHHHHHHHHHHhhccCCCc-ceeEEe
Q 026386 106 ------G-------ATVLFEEANKGTNNLGVVVNPVR--------VASLGEFGTPQFVADKLIQAEKRKESTI-DTELIG 163 (239)
Q Consensus 106 ------G-------~dv~F~d~~~~~~nVsVvIspv~--------~~sl~dfGsp~eVa~~Ll~~~~~~~sg~-~a~ll~ 163 (239)
| ..++|..| +++|||||+|+|++ .++|.|||+|+|||+.|+ +.+..+ .++.++
T Consensus 105 ~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v----P~g~~~~saR~ie 179 (241)
T PLN03152 105 AGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV----PGGATLYSARTIK 179 (241)
T ss_pred cccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC----CCcccccccceee
Confidence 2 23568776 78999999999973 799999999999997776 333111 344444
Q ss_pred ceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386 164 ASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236 (239)
Q Consensus 164 a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~ 236 (239)
.+ ++. ||++||+|||.++ .||.+++ +|.+||||||++++ +|+||+|++ .+|+++++||.|+
T Consensus 180 l~-~E~-dGKtYY~lEy~v~------~RH~LaTVaVsrGKLYTl~aSt---~EkRW~Kvk-~kfr~aa~SFsV~ 241 (241)
T PLN03152 180 VK-EEE-GIRTYYFYEFGRD------EQHVALVATVNSGKAYIAGATA---PESKWDDDG-VKLRSAAISLTVL 241 (241)
T ss_pred ee-eec-CCceeEEEEEEeC------CcEEEEEEEEcCCeEEEEecCC---chhchHHHH-HHHHHHHhheeeC
Confidence 43 454 9999999999975 3565555 99999999999999 999999999 7999999999984
No 7
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=98.08 E-value=0.00028 Score=56.47 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=80.6
Q ss_pred EEecCCCCeeccccCceEEEeeCCCC--CccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCcceeEEeceeeec
Q 026386 92 TLLRPSSWIKVDKAGATVLFEEANKG--TNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGASERSG 169 (239)
Q Consensus 92 sf~yP~~W~~v~~~G~dv~F~d~~~~--~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll~a~er~~ 169 (239)
+|..|.+|+..... .|..+... ..|+.|+-.+++ +=.++++..++.++.+.+.- ...++++...-+.
T Consensus 3 ~~~lP~~~~D~t~n----v~~~~~~~~~~~slvIsR~~l~-----~g~tl~~~~~~q~~~l~~~l--~~~~~~~~~~~~l 71 (130)
T PF08786_consen 3 SLTLPDGWQDRTMN----VLVLPDSGGSGPSLVISRDPLP-----DGETLEDYLQRQLAQLRKQL--PGFQLVERQPITL 71 (130)
T ss_dssp EEEEETTSEE--BE----EEEE--BTTB-EEEEEEEE--------TTS-HHHHHHHHHHHHHCCS--TT-EEEEEEEEEE
T ss_pred eEeCCCcceeceEE----EEEccCCCCCcceEEEEeccCC-----CCCCHHHHHHHHHHHHHhhC--CCcEEEeeEEEEe
Confidence 57789999986533 45444333 334444444443 11356777778777765442 3456666665565
Q ss_pred CCCcEEEEEEEEEecCCCCcceEEEEEEEeC-CEEEEEEEeecCCCCCCcchhhHHHHHHHhhcc
Q 026386 170 HGGLKVYEFEYKVDSSRGGLKRIFSAAFVAS-KKLYLLNITHSDKPESPLDTHTRMMLEEVLHSF 233 (239)
Q Consensus 170 ~dG~~YY~~Ey~v~s~~~~~~Rh~laatv~~-gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF 233 (239)
+|.+-+.+||.-...+. .-+...++...+ +++|+++.++ +....+..+ +.++.+++||
T Consensus 72 -~~~~a~~l~~~~~~~g~-~v~Q~q~~~~~~~~~~l~~T~t~---~~~~~~~~~-~~~~~i~~Sf 130 (130)
T PF08786_consen 72 -GGRPARELEYSFRSGGQ-PVYQRQAAVLLPGRRVLVFTYTA---PGPFTEEQR-AHWEAILKSF 130 (130)
T ss_dssp -TTEEEEEEEEEEEETTC-EEEEEEEEEEEC-CCEEEEEEEE---ECCCHHHHH-HHHHHHHCT-
T ss_pred -CCCCeEEEEEEEeeCCE-EEEEEEEEEEECCCEEEEEEEEc---CCCCCHHHH-HHHHHHHhcC
Confidence 88899999999885542 334444455555 9999999999 999999999 8999999998
No 8
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.75 Score=38.53 Aligned_cols=132 Identities=22% Similarity=0.334 Sum_probs=81.9
Q ss_pred EEecCCCCeeccccCceEEEeeCCCCCccEEEEEecCCCCCcccCC-CHHHHHHHHHHHhhccCCCcceeEEeceeeecC
Q 026386 92 TLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFG-TPQFVADKLIQAEKRKESTIDTELIGASERSGH 170 (239)
Q Consensus 92 sf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVvIspv~~~sl~dfG-sp~eVa~~Ll~~~~~~~sg~~a~ll~a~er~~~ 170 (239)
.|..|..|+.-... .|.-...+..-++.+|+--. + +-| +..+..++.+..+.+.=.+ -++..-.+-+.
T Consensus 10 ~l~lP~~w~DrSvN----vf~~~~~gt~~~sfvIsRd~---~-~~g~~~~~y~~rql~~l~k~Lpg--y~~~~~~e~~v- 78 (147)
T COG5435 10 TLELPAAWQDRSVN----VFVSGDNGTSGFSFVISRDP---L-EPGDTFPEYVQRQLALLRKQLPG--YELHHRREIEV- 78 (147)
T ss_pred eEcCcchhccceEE----EEEecCCCcceeEEEEecCC---C-CCCCcHHHHHHHHHHHHHhhCCC--eEEeecccccc-
Confidence 68899999986543 34333333455566664221 1 112 2345566666655443222 34444444555
Q ss_pred CCcEEEEEEEEEecCCCCcceE-EEEEE-EeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhcccccCC
Q 026386 171 GGLKVYEFEYKVDSSRGGLKRI-FSAAF-VASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAAPT 238 (239)
Q Consensus 171 dG~~YY~~Ey~v~s~~~~~~Rh-~laat-v~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~p~ 238 (239)
+|..-...+|.-.++.++.+|. .+.++ -+++++-++++++ +-.--++.+ +...+++.||...|+
T Consensus 79 ~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt---~~~ftp~q~-~~~~~~I~Sf~p~~~ 144 (147)
T COG5435 79 GGAAAPLLDYQWTSPEGEQRRVQQRQVFIERGDTVLIFTLTT---PGEFTPSQK-KAWEQVIQSFVPNPP 144 (147)
T ss_pred CccccceeEEEeecCCCCCceEEEEEeecccCCeEEEEEecC---CCCCCHHHH-HHHHHHHHhcCCCCC
Confidence 7888888888777752223443 33444 4567999999999 777777777 899999999998775
No 9
>PRK11615 hypothetical protein; Provisional
Probab=94.89 E-value=2 Score=37.22 Aligned_cols=132 Identities=11% Similarity=0.177 Sum_probs=83.3
Q ss_pred CCCeEEecCCCCeecccc-C----ceEEEeeCCCCCccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCcceeEE
Q 026386 88 NEGFTLLRPSSWIKVDKA-G----ATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELI 162 (239)
Q Consensus 88 ~~gYsf~yP~~W~~v~~~-G----~dv~F~d~~~~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll 162 (239)
..+.+|..|.++.+.... | .-.+|-|+. ...+-++| +-+ .+=++ .+..+.+|+++.+.... .-.++
T Consensus 47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~t--g~kavIVi-~gD-~~~~~---Ld~la~rl~~qQr~rdp--~lqvv 117 (185)
T PRK11615 47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADAT--GQKAVIVI-LGD-DTNED---LAVLAKRLEDQQRSRDP--QLQVV 117 (185)
T ss_pred ccEEEEEcCCccccccccccccccceEEEEcCC--CCEEEEEE-eCC-CChhh---HHHHHHHHHHHHHhhCc--Cceee
Confidence 478999999999975532 3 224688843 23333233 211 11111 35667777776443321 23444
Q ss_pred eceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhcccc
Q 026386 163 GASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDA 235 (239)
Q Consensus 163 ~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v 235 (239)
.-+.-+. +|++++.++=++...+ .+-....+ +..++||-||.+.. |.+.-.+.. ...+.|+++..+
T Consensus 118 snK~i~i-~G~~~qQLDS~~t~~G--qk~~SSvvL~~v~~rl~tlQitl---pA~nqqqaq-~~ae~ii~tl~~ 184 (185)
T PRK11615 118 TNKAIEL-KGHKLQQLDSIISAKG--QTAYSSVVLGKVDNQLLTMQITL---PADNQQQAQ-TTAENIINTLVI 184 (185)
T ss_pred cceeEEE-CCeeeEEeeeeeecCC--ceEEEEEEEEeeCCeEEEEEEec---CCCCHHHHH-HHHHHHHhheec
Confidence 4444455 9999999997655443 33333344 88999999999999 888877777 688888887654
No 10
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=94.45 E-value=1.7 Score=36.17 Aligned_cols=131 Identities=14% Similarity=0.220 Sum_probs=62.8
Q ss_pred ceecccCCCCeEEecCCCCeeccccCceEEEeeCCCCCccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCccee
Q 026386 81 LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTE 160 (239)
Q Consensus 81 ~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ 160 (239)
++-|.++..=|++.||.+|.+..-..-..+|.||..=..|..++.-.- |+ -.-|...+.++.+. ...++
T Consensus 1 mkKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk~--------~~-~~ygk~~i~~EL~e--n~~a~ 69 (153)
T PF12712_consen 1 MKKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYKG--------GS-AQYGKECIRQELKE--NPSAK 69 (153)
T ss_dssp -EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE----------S-TTHHHHHHHHHHHH---TT-E
T ss_pred CCcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEec--------cc-ccchHHHHHHHHHh--CCCcc
Confidence 356778888899999999999884333446999988888887554321 11 12233444442211 22345
Q ss_pred EEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEEEEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386 161 LIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAAFVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236 (239)
Q Consensus 161 ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laatv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~ 236 (239)
+++.. ...--|.-|..-.... -+.-|+-. +-.++..|.+..+. +-. ... ...+.|+.|..|.
T Consensus 70 ~vkvg-----~~~caYs~E~f~eeg~-~YtsH~Wv-tg~~~~sfeCSFTv---~kg---~~~-~~aE~iiasL~vR 131 (153)
T PF12712_consen 70 LVKVG-----NWECAYSKEMFQEEGA-YYTSHLWV-TGEGDVSFECSFTV---PKG---ESV-KEAEEIIASLEVR 131 (153)
T ss_dssp EEEET-----TEEEEEEEEEEEETTE-EEEEEEEE-EEETTEEEEEEEEE---ETT-------HHHHHHHHH-EE-
T ss_pred eEEec-----cEEEEEEhhhhhccCe-eEEEEEEE-EecCceEEEEEEEc---cCC---CCc-chHHHHHhhheeh
Confidence 55443 2234555554322111 01233333 56788888888887 322 122 4568888888763
No 11
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=87.85 E-value=14 Score=31.73 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=72.4
Q ss_pred CeEEecCCCCeeccccCc---eEEEeeC-CC--CCccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCcceeEEe
Q 026386 90 GFTLLRPSSWIKVDKAGA---TVLFEEA-NK--GTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIG 163 (239)
Q Consensus 90 gYsf~yP~~W~~v~~~G~---dv~F~d~-~~--~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll~ 163 (239)
.-++-.|.||........ -....++ .+ -.-|+-|+|..+. .+| +|+|+.+.=-...... .+ .+-++
T Consensus 32 ~v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~----G~~-Dp~e~l~~a~~d~~~l-~g--~~~~~ 103 (175)
T PF10738_consen 32 TVSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLT----GDF-DPAEALEHAPADAQNL-PG--FRELD 103 (175)
T ss_pred EEeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEecc----CCC-CHHHHHHhchhhHhhC-cC--ccccc
Confidence 456778999999875532 2223222 21 2347888887764 233 3555543211111111 11 22333
Q ss_pred ceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-E--EeCC--EEEEEEEeecCCCCCCcchhhHHHHHHHhhccccc
Q 026386 164 ASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-F--VASK--KLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDAA 236 (239)
Q Consensus 164 a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-t--v~~g--kLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~ 236 (239)
...-+- +|-+=+.+|-.-+..+ .+||...- . ..++ +|-.|++++ .+.+=.... +..+.|++.|+|.
T Consensus 104 ~s~~~~-~GfpS~~i~GtY~~~g--~~~~~~~r~VV~~~~~~~Ylvqltvt~---~~~qa~~~~-~a~~aI~~g~~It 174 (175)
T PF10738_consen 104 GSPSDF-SGFPSSQIEGTYDKDG--MRLHTSQRTVVIPGDDQRYLVQLTVTT---TADQAVALA-DATEAIDEGFTIT 174 (175)
T ss_pred CCcccc-CCCceeEEEEEEeeCC--EEeEeEEEEEEEeCCCcEEEEEEEeec---cccchhhhh-hHHHHHHcCCEec
Confidence 333333 7888888884333322 45555433 2 2244 555566677 777777777 6889999999984
No 12
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=85.02 E-value=25 Score=32.52 Aligned_cols=140 Identities=19% Similarity=0.358 Sum_probs=72.3
Q ss_pred eecccCCCCeEEecCCCCeecccc----CceEEEeeCCCC---------CccEEEEEecCC---CCCcccCCCHHHHHHH
Q 026386 82 QRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKG---------TNNLGVVVNPVR---VASLGEFGTPQFVADK 145 (239)
Q Consensus 82 ~~y~D~~~gYsf~yP~~W~~v~~~----G~dv~F~d~~~~---------~~nVsVvIspv~---~~sl~dfGsp~eVa~~ 145 (239)
-++.+...||+|.+|.||++.+.. |....=+-..+. .+.-+|+...+. +.+.+- +-...|.+
T Consensus 110 grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae~--dn~kaa~r 187 (297)
T PF07174_consen 110 GRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAEP--DNTKAAVR 187 (297)
T ss_pred ccccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccccccccccccC--ChHHHHHH
Confidence 356667899999999999998843 555443221111 123455555553 222221 33457788
Q ss_pred HHHHhh----ccCC---CcceeEEeceeeecCCCcEEEEEEEEEec-CCCCcceEEEEE-EE--e-------CCEEEEEE
Q 026386 146 LIQAEK----RKES---TIDTELIGASERSGHGGLKVYEFEYKVDS-SRGGLKRIFSAA-FV--A-------SKKLYLLN 207 (239)
Q Consensus 146 Ll~~~~----~~~s---g~~a~ll~a~er~~~dG~~YY~~Ey~v~s-~~~~~~Rh~laa-tv--~-------~gkLYtL~ 207 (239)
|..+.. +-.. +|+..-+++.--. +---||+..|.=.+ ++| .+...+ .. . .-|-|.+=
T Consensus 188 l~sdmgeffmp~pg~rinq~~~~l~~~g~~--g~asyyevkf~d~~kp~g---qiw~~vvg~p~~~~~~~~~~~rwfvvw 262 (297)
T PF07174_consen 188 LASDMGEFFMPYPGTRINQETTPLDANGMP--GSASYYEVKFTDANKPNG---QIWAGVVGSPVAPGTPRGTPQRWFVVW 262 (297)
T ss_pred HhccccceeccCCCccccccccccccCCcc--cceeEEEEEeccCCCCCC---ceEEEeecCcCCCCCCCCCCceEEEEE
Confidence 887732 2122 2334445543221 33467777664222 232 233333 21 1 23888888
Q ss_pred EeecCCCCCCcchhhHHHHHHHhhccc
Q 026386 208 ITHSDKPESPLDTHTRMMLEEVLHSFD 234 (239)
Q Consensus 208 ~qa~~~pE~rW~k~~~~~l~~vv~SF~ 234 (239)
+.+ ....-+|... +...+|-|
T Consensus 263 lgt---~~~pvd~~~a---~~la~si~ 283 (297)
T PF07174_consen 263 LGT---ANNPVDKGAA---KALAESIR 283 (297)
T ss_pred ecC---CCCCCCHHHH---HHHHhhcc
Confidence 887 5555666553 34444443
No 13
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=74.44 E-value=26 Score=33.77 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.9
Q ss_pred eecccCCCCeEEecCCCCeecccc
Q 026386 82 QRYTDSNEGFTLLRPSSWIKVDKA 105 (239)
Q Consensus 82 ~~y~D~~~gYsf~yP~~W~~v~~~ 105 (239)
+.|.-+.-|++|.||.||+-.++.
T Consensus 288 q~FlH~~Lg~tf~~P~Gf~IdN~~ 311 (479)
T COG4784 288 QTFLHPELGVTFDVPDGFKIDNSA 311 (479)
T ss_pred cceeccccceEEecCCceEecCch
Confidence 567778899999999999998865
No 14
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=68.20 E-value=5.5 Score=23.63 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHHHHhhhCC
Q 026386 49 LSKRELCLSSFVLILNGLYP 68 (239)
Q Consensus 49 ~~RR~lll~~~~~~~~~~~~ 68 (239)
++||+.|-..++.++..+++
T Consensus 2 ~sRR~fLk~~~a~~a~~~~~ 21 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAALG 21 (26)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 68999999887766655544
No 15
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=45.97 E-value=18 Score=26.23 Aligned_cols=15 Identities=27% Similarity=0.124 Sum_probs=11.1
Q ss_pred cccchhhHHHHHHHH
Q 026386 46 SLRLSKRELCLSSFV 60 (239)
Q Consensus 46 ~~~~~RR~lll~~~~ 60 (239)
+...+||++|.++++
T Consensus 6 ~~~~sRR~Flk~lg~ 20 (66)
T TIGR02811 6 KADPSRRDLLKGLGV 20 (66)
T ss_pred cCCccHHHHHHHHHH
Confidence 456789999986654
No 16
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=41.60 E-value=18 Score=30.70 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=6.8
Q ss_pred cchhhHHH
Q 026386 48 RLSKRELC 55 (239)
Q Consensus 48 ~~~RR~ll 55 (239)
+++||++|
T Consensus 1 g~sRR~~L 8 (168)
T PF12318_consen 1 GLSRRRLL 8 (168)
T ss_pred CCcHHHHH
Confidence 46899999
No 17
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=38.61 E-value=18 Score=30.47 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=16.0
Q ss_pred cccCCCHHHHHHHHHHHh
Q 026386 133 LGEFGTPQFVADKLIQAE 150 (239)
Q Consensus 133 l~dfGsp~eVa~~Ll~~~ 150 (239)
+++||+|+++|+.++.+.
T Consensus 47 i~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 47 IAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHcCCHHHHHHHHHHhh
Confidence 689999999999999773
No 18
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=30.13 E-value=72 Score=19.04 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=11.7
Q ss_pred chhhHHHHHHHHHHHhhh
Q 026386 49 LSKRELCLSSFVLILNGL 66 (239)
Q Consensus 49 ~~RR~lll~~~~~~~~~~ 66 (239)
++||+.|-...+.++.+.
T Consensus 1 ~sRR~Flk~~~~~~a~~~ 18 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAAG 18 (29)
T ss_pred CchhhhHHHHHHHHHHHh
Confidence 479999876655444443
No 19
>PF12559 Inhibitor_I10: Serine endopeptidase inhibitors; InterPro: IPR022217 This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularise the molecule giving it its inhibitory conformation. ; PDB: 1IXU_A.
Probab=27.86 E-value=24 Score=24.94 Aligned_cols=12 Identities=42% Similarity=0.515 Sum_probs=4.0
Q ss_pred CeEEecCCCCee
Q 026386 90 GFTLLRPSSWIK 101 (239)
Q Consensus 90 gYsf~yP~~W~~ 101 (239)
..+..||++|.+
T Consensus 44 ~~TlKyPSD~ee 55 (56)
T PF12559_consen 44 IQTLKYPSDWEE 55 (56)
T ss_dssp -----SS-SS--
T ss_pred CcceeCCCcccc
Confidence 489999999976
No 20
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=27.77 E-value=32 Score=30.00 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=28.0
Q ss_pred cccchhhHHHHHHHHHHHhhhCCCCCCCCCccccCceecccCCCCe
Q 026386 46 SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGF 91 (239)
Q Consensus 46 ~~~~~RR~lll~~~~~~~~~~~~~~~~~~~A~~~g~~~y~D~~~gY 91 (239)
+....||.++..+++.++.+.. .++++++++-|-+.|. .++|
T Consensus 38 ~~~~~rr~~~~~~l~~~~~~~~--~~~~~~~e~~GtRsfL--Kerf 79 (190)
T PLN02999 38 QDIFTRRRTLTSLITFTVIGGA--TSSALAQEKWGTRSFI--KEKY 79 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHhhc--cCcHHHHhhhhhHHHH--HHhc
Confidence 5677899999888765543322 2234567778999998 4554
No 21
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.37 E-value=71 Score=18.48 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=17.1
Q ss_pred EEeCCEEEEEEEeecCCCCCCcch
Q 026386 197 FVASKKLYLLNITHSDKPESPLDT 220 (239)
Q Consensus 197 tv~~gkLYtL~~qa~~~pE~rW~k 220 (239)
+-.+|+||.+++.. .+.+|..
T Consensus 12 ~~~~g~l~a~d~~~---G~~~W~~ 32 (33)
T smart00564 12 GSTDGTLYALDAKT---GEILWTY 32 (33)
T ss_pred EcCCCEEEEEEccc---CcEEEEc
Confidence 45679999999988 8888863
No 22
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=26.37 E-value=79 Score=19.80 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.6
Q ss_pred eEEEEEEEeCCEEEEEEEee
Q 026386 191 RIFSAAFVASKKLYLLNITH 210 (239)
Q Consensus 191 Rh~laatv~~gkLYtL~~qa 210 (239)
|+..++++-+|++|++....
T Consensus 2 R~~~~~~~~~~~iyv~GG~~ 21 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYD 21 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBE
T ss_pred CccCEEEEECCEEEEEeeec
Confidence 55566789999999999887
No 23
>PF13964 Kelch_6: Kelch motif
Probab=25.89 E-value=63 Score=20.86 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=15.4
Q ss_pred eEEEEEEEeCCEEEEEEEee
Q 026386 191 RIFSAAFVASKKLYLLNITH 210 (239)
Q Consensus 191 Rh~laatv~~gkLYtL~~qa 210 (239)
|+..++++-+|+||.+-...
T Consensus 2 R~~~s~v~~~~~iyv~GG~~ 21 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYD 21 (50)
T ss_pred CccCEEEEECCEEEEECCCC
Confidence 45556677888999998886
No 24
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=21.85 E-value=66 Score=24.78 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHhhhCC
Q 026386 50 SKRELCLSSFVLILNGLYP 68 (239)
Q Consensus 50 ~RR~lll~~~~~~~~~~~~ 68 (239)
.||-+||++++.+++.+++
T Consensus 2 aRRlwiLslLAVtLtVALA 20 (100)
T PF05984_consen 2 ARRLWILSLLAVTLTVALA 20 (100)
T ss_pred chhhHHHHHHHHHHHHHhh
Confidence 5999999998877666544
No 25
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=21.83 E-value=2.2e+02 Score=19.80 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHhhccCCCcceeEEeceeeecCCCcEEEEEEEEEe
Q 026386 138 TPQFVADKLIQAEKRKESTIDTELIGASERSGHGGLKVYEFEYKVD 183 (239)
Q Consensus 138 sp~eVa~~Ll~~~~~~~sg~~a~ll~a~er~~~dG~~YY~~Ey~v~ 183 (239)
+.++|++ ++..+...+.=..+++.++...+. +|..+|.|+..++
T Consensus 34 ~~~~v~~-f~~~L~~~~~f~~v~l~~~~~~~~-~~~~~~~F~i~~~ 77 (78)
T PF05137_consen 34 SYQSVAA-FLRNLEQSPFFSDVSLSSISRQEG-DGNSLVSFTITAK 77 (78)
T ss_pred CHHHHHH-HHHHHhhCCCccceEEEEEEeecc-CCCceEEEEEEEE
Confidence 3444443 344443333333567777766654 7778999987654
No 26
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=20.95 E-value=51 Score=25.32 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=17.0
Q ss_pred eecccccchhhHHHHHHHHHHHh
Q 026386 42 VELSSLRLSKRELCLSSFVLILN 64 (239)
Q Consensus 42 ~~~~~~~~~RR~lll~~~~~~~~ 64 (239)
-+.....++||++|++.++++..
T Consensus 46 Fe~~A~~~tkR~~l~~fl~l~g~ 68 (90)
T PLN00017 46 FETFAAPFTKRGLLLKFLALGGG 68 (90)
T ss_pred HHHHhhhhhHHHHHHHHHHHcCc
Confidence 34445778999999999876544
No 27
>PRK07474 sulfur oxidation protein SoxY; Provisional
Probab=20.01 E-value=83 Score=26.54 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=19.2
Q ss_pred CCcEEEEEEEEEecCCCCcceEEEEEEE-eCCEEEEEEE
Q 026386 171 GGLKVYEFEYKVDSSRGGLKRIFSAAFV-ASKKLYLLNI 208 (239)
Q Consensus 171 dG~~YY~~Ey~v~s~~~~~~Rh~laatv-~~gkLYtL~~ 208 (239)
.|+.|...-.++..+ -...+++. .+|+||.-..
T Consensus 110 ~~~~~vstRIRm~~t-----s~V~Ava~~~dG~l~~a~~ 143 (154)
T PRK07474 110 AGRAEASTRIRLAQT-----QNVIAIAEMSDGSLWSAKA 143 (154)
T ss_pred CCCceEEEEEEcCCC-----ceEEEEEEeCCCeEEEEEE
Confidence 667776666555432 23444433 4899987543
Done!