Query 026386
Match_columns 239
No_of_seqs 159 out of 292
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 2.2E-39 7.7E-44 269.6 18.0 154 78-236 5-165 (165)
2 1v2b_A 23-kDa polypeptide of p 100.0 2E-39 6.9E-44 274.9 13.4 151 79-236 7-177 (177)
3 2lnj_A SLL1418 protein, putati 100.0 1.2E-40 4E-45 279.7 0.0 152 79-236 12-170 (170)
4 1tu1_A Hypothetical protein PA 98.4 1.7E-05 5.9E-10 64.2 16.0 139 80-238 2-144 (148)
5 3lyd_A Uncharacterized protein 97.3 0.014 4.7E-07 48.3 15.3 134 89-238 18-160 (161)
6 3hlz_A Uncharacterized protein 80.9 1.9 6.4E-05 37.7 4.8 44 82-125 5-48 (269)
7 2ysi_A Transcription elongatio 25.5 16 0.00055 22.7 0.2 21 198-221 17-37 (40)
8 3stb_C RNA-editing complex pro 23.8 94 0.0032 24.9 4.5 53 131-186 88-141 (148)
9 1ywi_A Formin-binding protein 21.1 19 0.00066 22.4 -0.1 20 198-220 19-38 (41)
10 1e0l_A Formin binding protein; 19.6 19 0.00065 21.8 -0.4 20 199-221 14-33 (37)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=2.2e-39 Score=269.60 Aligned_cols=154 Identities=29% Similarity=0.466 Sum_probs=141.0
Q ss_pred ccCceecccCCCCeEEecCCCCeecccc-CceEEEeeCCCCCccEEEEEecCC-CCCcccCCCHHHHHHHHHHH-hhccC
Q 026386 78 EMELQRYTDSNEGFTLLRPSSWIKVDKA-GATVLFEEANKGTNNLGVVVNPVR-VASLGEFGTPQFVADKLIQA-EKRKE 154 (239)
Q Consensus 78 ~~g~~~y~D~~~gYsf~yP~~W~~v~~~-G~dv~F~d~~~~~~nVsVvIspv~-~~sl~dfGsp~eVa~~Ll~~-~~~~~ 154 (239)
..||++|.|+.+||+|.||.+|+++.++ |++++|+||.+..+||+|+|+|++ .++|++||+|++||++|+++ +++++
T Consensus 5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~~ 84 (165)
T 2xb3_A 5 TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSE 84 (165)
T ss_dssp -CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCTT
T ss_pred CCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCCC
Confidence 3699999999999999999999999998 999999999998999999999997 59999999999999999998 66677
Q ss_pred CCcceeEEeceeeecCCCcEEEEEEEEEecCCC---CcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHh
Q 026386 155 STIDTELIGASERSGHGGLKVYEFEYKVDSSRG---GLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVL 230 (239)
Q Consensus 155 sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~---~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv 230 (239)
+++.++|+++.+|+. +|++||+|||.++++++ +..||.+++ ++.+||||+|++|+ ||++|++++ +.|++|+
T Consensus 85 ~~~~~~l~~a~~r~~-~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sa---pe~~w~~~~-~~l~~v~ 159 (165)
T 2xb3_A 85 SGRSSALIAATSQKA-DDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSA---PEERWPKVE-DQFKTIV 159 (165)
T ss_dssp SSCEEEEEEEEEEEE-TTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEE---EGGGHHHHH-HHHHHHH
T ss_pred CCcceEEEEeeeeec-CCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEec---CHHHhHHHH-HHHHHHH
Confidence 889999999999976 99999999999999872 247888877 99999999999999 999999999 8999999
Q ss_pred hccccc
Q 026386 231 HSFDAA 236 (239)
Q Consensus 231 ~SF~v~ 236 (239)
+||+|.
T Consensus 160 ~SF~v~ 165 (165)
T 2xb3_A 160 SSFTVY 165 (165)
T ss_dssp HTCEEC
T ss_pred hhEEeC
Confidence 999974
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=2e-39 Score=274.86 Aligned_cols=151 Identities=22% Similarity=0.326 Sum_probs=127.3
Q ss_pred cCceecccCCCCeEEecCCCCeecc---ccCceEEEeeCCCCCccEEEEEecCCCCCcccCCCHHHH----HHHHHHH-h
Q 026386 79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFV----ADKLIQA-E 150 (239)
Q Consensus 79 ~g~~~y~D~~~gYsf~yP~~W~~v~---~~G~dv~F~d~~~~~~nVsVvIspv~~~sl~dfGsp~eV----a~~Ll~~-~ 150 (239)
.||++|. .+||+|+||.+|++++ .+|+|++|+|+++..+||+|+|+|+++++|+|||+|++| +++|.++ +
T Consensus 7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~~~ 84 (177)
T 1v2b_A 7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY 84 (177)
T ss_dssp CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHHhh
Confidence 6999998 8999999999999765 459999999999999999999999999999999999995 6666665 4
Q ss_pred hc---c------CCCcceeEEeceeeecCCCcEEEEEEEEEecCCC-CcceEEEEE-EEeCCEEEEEEEeecCCCCCCcc
Q 026386 151 KR---K------ESTIDTELIGASERSGHGGLKVYEFEYKVDSSRG-GLKRIFSAA-FVASKKLYLLNITHSDKPESPLD 219 (239)
Q Consensus 151 ~~---~------~sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~-~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~ 219 (239)
++ . ++.+.++||++.+|+. ||++||+|||.++++++ ++.||.+++ +|+|||||+|++|+ ||+||+
T Consensus 85 ~~~~~~~~gf~~~~~~~a~ll~a~~r~~-~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a---~e~~W~ 160 (177)
T 1v2b_A 85 SGKTDSEGGFESDAVAIANVLETSTAEV-GGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQA---GDKRWF 160 (177)
T ss_dssp -------------CCCEEEEEEEEEEEE-TTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEE---EGGGCS
T ss_pred cccccccCCcccCcccceEEEEeEEEEe-CCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEec---CHHHhh
Confidence 43 2 2337899999999998 99999999999999873 246888876 99999999999999 999999
Q ss_pred hh-hHHHHHHHhhccccc
Q 026386 220 TH-TRMMLEEVLHSFDAA 236 (239)
Q Consensus 220 k~-~~~~l~~vv~SF~v~ 236 (239)
++ + +.|++|++||+|.
T Consensus 161 k~~~-~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 161 KGAK-KFVENTATSFSLA 177 (177)
T ss_dssp TTTT-HHHHHHHHTCEEC
T ss_pred hhHH-HHHHHHHhheecC
Confidence 96 8 8999999999984
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=1.2e-40 Score=279.68 Aligned_cols=152 Identities=28% Similarity=0.488 Sum_probs=142.0
Q ss_pred cCceecccCCCCeEEecCCCCeecccc----CceEEEeeCCCCCccEEEEEecCCC-CCcccCCCHHHHHHHHHHH-hhc
Q 026386 79 MELQRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQA-EKR 152 (239)
Q Consensus 79 ~g~~~y~D~~~gYsf~yP~~W~~v~~~----G~dv~F~d~~~~~~nVsVvIspv~~-~sl~dfGsp~eVa~~Ll~~-~~~ 152 (239)
.||++|.|+.+||+|.||++|++++++ |+|++|+||.+..+||+|+|+|++. ++|+|||+|++||++|+++ +++
T Consensus 12 ~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~~~~ 91 (170)
T 2lnj_A 12 ASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVNDA 91 (170)
Confidence 699999999999999999999998877 9999999999999999999999985 9999999999999999999 677
Q ss_pred cCCCcceeEEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhh
Q 026386 153 KESTIDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLH 231 (239)
Q Consensus 153 ~~sg~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~ 231 (239)
+++++.++||++.+|+. ||++||+|||.++++++ ..||.+++ ++++||||+|++|+ ||++|++++ +.|++|++
T Consensus 92 ~~~~~~a~li~a~~~~~-~G~~yY~~Ey~~~~~~~-~~rh~l~~~~v~~gklY~l~~~a---pe~~w~~~~-~~l~~v~~ 165 (170)
T 2lnj_A 92 SQGDRQAELINAEARDE-DGQVYYTLEYRVLVGDN-VERHDLASVTTNRGKLITFDLST---AEDRWDTVK-SLFDTVAS 165 (170)
Confidence 78889999999999976 99999999999999844 57888877 99999999999999 999999999 89999999
Q ss_pred ccccc
Q 026386 232 SFDAA 236 (239)
Q Consensus 232 SF~v~ 236 (239)
||+|.
T Consensus 166 SF~v~ 170 (170)
T 2lnj_A 166 SFHVY 170 (170)
Confidence 99974
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.40 E-value=1.7e-05 Score=64.16 Aligned_cols=139 Identities=9% Similarity=0.138 Sum_probs=91.3
Q ss_pred CceecccCCCCeEEecCCCCeeccccCceEEEeeCCCC-C--ccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCC
Q 026386 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKG-T--NNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKEST 156 (239)
Q Consensus 80 g~~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~-~--~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg 156 (239)
.+..|. .+.++|..|.+|+... ..+++ .+... . -|+.|...++. +=.+.++..++-++.+.+.-.
T Consensus 2 ~m~~y~--~~Egsl~lP~gw~D~t---~nv~~-~~~~~~~g~~~lvIsR~~~~-----~~~~l~~~~~~q~~~l~~~l~- 69 (148)
T 1tu1_A 2 HMTLYR--LHEADLEIPDAWQDQS---INIFK-LPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEKQLP- 69 (148)
T ss_dssp CEEEEE--CSSEEEEEETTSEECC---BEEEE-ECCBTTBCCEEEEEEEECCC-----TTSCHHHHHHHHHHHHHHHST-
T ss_pred CCceEE--ECCEEEeCCCCcEeee---EEEEE-cCCCCCCCceEEEEEeccCC-----CCCCHHHHHHHHHHHHHhhCc-
Confidence 356677 7999999999999443 34444 33222 2 35555554443 213556666666555443322
Q ss_pred cceeEEeceeeecCCCcEEEEEEEEEecCCCCcceEEEEE-EEeCCEEEEEEEeecCCCCCCcchhhHHHHHHHhhcccc
Q 026386 157 IDTELIGASERSGHGGLKVYEFEYKVDSSRGGLKRIFSAA-FVASKKLYLLNITHSDKPESPLDTHTRMMLEEVLHSFDA 235 (239)
Q Consensus 157 ~~a~ll~a~er~~~dG~~YY~~Ey~v~s~~~~~~Rh~laa-tv~~gkLYtL~~qa~~~pE~rW~k~~~~~l~~vv~SF~v 235 (239)
.-+++....... +|.+--.+||.-...+ ..+|-.-+ .+..+++|.|+.++ +...|+..+ +.++.|++||++
T Consensus 70 -~y~~~~~~~~~l-~g~~a~~~e~~~~~~g--~~~~Q~q~~~~~~~~~l~~t~t~---~~~~~~~~~-~~~~~i~~Sf~~ 141 (148)
T 1tu1_A 70 -GFKLHKRWDINI-HGHAAVLLDYQWQREG--RDLMLRQVFIERRPAVLITTLTT---TPADLPHHE-PAWKQAMQTLVP 141 (148)
T ss_dssp -TCEEEEEEEEEE-TTEEEEEEEEEEEETT--EEEEEEEEEECCSSSEEEEEEEE---CGGGHHHHH-HHHHHHHHTCEE
T ss_pred -CcEEeeeEeEEE-cCCcEEEEEEEEccCC--EEEEEEEEEEEECCeEEEEEEEc---CCCCCHHHH-HHHHHHHHhccc
Confidence 234444444443 6778888888777444 45666655 55555999999999 999999999 899999999998
Q ss_pred cCC
Q 026386 236 APT 238 (239)
Q Consensus 236 ~p~ 238 (239)
.++
T Consensus 142 ~~~ 144 (148)
T 1tu1_A 142 RPT 144 (148)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=97.26 E-value=0.014 Score=48.33 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCeEEecCCCCeeccccCceEEEeeCC---CCCccEEEEEecCCCCCcccCCCHHHHHHHHHHHhhccCCCcceeEEece
Q 026386 89 EGFTLLRPSSWIKVDKAGATVLFEEAN---KGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKESTIDTELIGAS 165 (239)
Q Consensus 89 ~gYsf~yP~~W~~v~~~G~dv~F~d~~---~~~~nVsVvIspv~~~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a~ll~a~ 165 (239)
-++++-.|.||+.....|.-....+.. .-.-|+-|++.-.+.. + .++.-..|-+.+..- ..-++++-.
T Consensus 18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~~----~--~e~~r~el~~~~~~l---p~~~~~~r~ 88 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAATG----A--LHNQRTELDQRATQL---PDYAERGRT 88 (161)
T ss_dssp CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECTT----H--HHHHHHHHHHHHTTS---TTCEEEEEE
T ss_pred ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCcH----H--HHHHHHHHHHHHhhC---CCcEeeccc
Confidence 478899999999997666533333322 2345888888766511 1 222222222212211 123444433
Q ss_pred eeecCCCcEEEEEEEEEecCCCCcceE---EEEE-EEeCCEEEEE--EEeecCCCCCCcchhhHHHHHHHhhcccccCC
Q 026386 166 ERSGHGGLKVYEFEYKVDSSRGGLKRI---FSAA-FVASKKLYLL--NITHSDKPESPLDTHTRMMLEEVLHSFDAAPT 238 (239)
Q Consensus 166 er~~~dG~~YY~~Ey~v~s~~~~~~Rh---~laa-tv~~gkLYtL--~~qa~~~pE~rW~k~~~~~l~~vv~SF~v~p~ 238 (239)
..+. +|.+-|..||.=..+.+ +.+ ...+ ...++..|.+ +++| .+.+-+... ..++.+++|+++.|-
T Consensus 89 ~~~~-~G~pa~~iey~y~~~~~--g~~aq~~~~vvve~~~v~~vv~lt~T~---~~~q~~~~~-~d~q~iv~sl~v~p~ 160 (161)
T 3lyd_A 89 ETTV-DGFPAYHIEYAYRHHGT--ITIAQMITLVEVSHPHAVDIIQLTATC---AGDQTADYW-DTFRLMHADLTVQPH 160 (161)
T ss_dssp EEEE-TTEEEEEEEEEEEETTT--EEEEEEEEEEEEECSSCEEEEEEEEEE---EGGGHHHHH-HHHHHHHHTCEEETT
T ss_pred cccc-CCcccEEEEEEEecCCC--ceEeeEEEEEEEecCCEEEEEEEEEEe---ccccchHHH-HHHHHHhheeEeccC
Confidence 3444 99999999998766653 344 2223 4456777777 8888 778888888 799999999999984
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=80.88 E-value=1.9 Score=37.72 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=35.5
Q ss_pred eecccCCCCeEEecCCCCeeccccCceEEEeeCCCCCccEEEEE
Q 026386 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVV 125 (239)
Q Consensus 82 ~~y~D~~~gYsf~yP~~W~~v~~~G~dv~F~d~~~~~~nVsVvI 125 (239)
+-|.+++.=|++.||.+|.+.+-..-.-+|.||..=..|..+.-
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISa 48 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISA 48 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEe
Confidence 45788888999999999999886544457999988888887554
No 7
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=25.49 E-value=16 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=15.5
Q ss_pred EeCCEEEEEEEeecCCCCCCcchh
Q 026386 198 VASKKLYLLNITHSDKPESPLDTH 221 (239)
Q Consensus 198 v~~gkLYtL~~qa~~~pE~rW~k~ 221 (239)
..+|+.|-.|..+ .|.+|++-
T Consensus 17 ~~~G~~YYyN~~T---~eS~We~P 37 (40)
T 2ysi_A 17 TPDGKVYYYNART---RESAWTKP 37 (40)
T ss_dssp CTTSCEEEEETTT---CCEESSCC
T ss_pred CCCCCEEEEECCC---CCEEeCCC
Confidence 4577788888887 78888763
No 8
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=23.79 E-value=94 Score=24.94 Aligned_cols=53 Identities=6% Similarity=-0.021 Sum_probs=29.1
Q ss_pred CCcccCCCHHHHHHHHHHHhhccCCCcce-eEEeceeeecCCCcEEEEEEEEEecCC
Q 026386 131 ASLGEFGTPQFVADKLIQAEKRKESTIDT-ELIGASERSGHGGLKVYEFEYKVDSSR 186 (239)
Q Consensus 131 ~sl~dfGsp~eVa~~Ll~~~~~~~sg~~a-~ll~a~er~~~dG~~YY~~Ey~v~s~~ 186 (239)
-+|.-|| ...|+.+.+.+. +|...-. --|...+-.+.+|+.||.|.|+.=.+.
T Consensus 88 ~~V~vfG--g~lAE~i~~ylk-kG~rVlVeGRLrmn~~~d~~gkk~Y~~p~i~V~~~ 141 (148)
T 3stb_C 88 HTVRVFD--SDYSSRVKEQLR-DGEWFLVTGRLRMVPQYDGSMRKYYHYPVIQVHPG 141 (148)
T ss_dssp EEEEECS--HHHHHHHHHHCC-TTCEEEEEEEEEEEEEEETTTTEEEEEEEEEECBT
T ss_pred EEEEEEC--ChHHHHHHHHhc-CCCEEEEEEEEEcceeECCCCCEEeeccEEEEeCC
Confidence 4466677 556664444332 2221111 123444454569999999999754443
No 9
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=21.07 E-value=19 Score=22.39 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=14.9
Q ss_pred EeCCEEEEEEEeecCCCCCCcch
Q 026386 198 VASKKLYLLNITHSDKPESPLDT 220 (239)
Q Consensus 198 v~~gkLYtL~~qa~~~pE~rW~k 220 (239)
..+|+.|=.|..+ .|++|++
T Consensus 19 ~~~G~~YYyN~~T---~eS~We~ 38 (41)
T 1ywi_A 19 SPDGRTYYYNTET---KQSTWEK 38 (41)
T ss_dssp ETTTEEEEEETTT---TEEEESC
T ss_pred CCCCCEEEEECCC---CCEEeCC
Confidence 3477888888877 7788875
No 10
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=19.60 E-value=19 Score=21.83 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=13.9
Q ss_pred eCCEEEEEEEeecCCCCCCcchh
Q 026386 199 ASKKLYLLNITHSDKPESPLDTH 221 (239)
Q Consensus 199 ~~gkLYtL~~qa~~~pE~rW~k~ 221 (239)
.+|+.|=.|..+ .|++|++-
T Consensus 14 ~~G~~YYyN~~T---~es~We~P 33 (37)
T 1e0l_A 14 ADGKTYYYNNRT---LESTWEKP 33 (37)
T ss_dssp TTSCEEEEETTT---TEEESSCC
T ss_pred CCCCEEEEECCC---CCEEecCC
Confidence 457777777777 77777753
Done!