BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026387
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex
pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complex
pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complex
pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4
Length = 290
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 75/234 (32%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIF------------------------- 90
AF ++ L+ ++K ER+VK SRDIT+ SK+ IF
Sbjct: 38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97
Query: 91 -------------------------QVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSD 125
+QEYVEA +F F +T + ++
Sbjct: 98 RQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTE 157
Query: 126 --------PAIEP---------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKI 168
P+ + L++ DYLLG+ADLTGELMR+ I + +G+++ ++
Sbjct: 158 DNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEV 217
Query: 169 CRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 219
+F R +Y + + N+ ++ K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 218 SQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266
>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po
Length = 298
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 133 INVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDM 192
++ +Y+LGL+DLTGEL R I + G+ + C+ + Y + ++
Sbjct: 193 VDPTEYILGLSDLTGELXRRCINSLGSGDTDTCLDTCKALQHFYS--GYISLNCQRAREL 250
Query: 193 KTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSS 226
K+ T QSVLK EN C +V VRG E G++
Sbjct: 251 WRKITTXKQSVLKAENVCYNVKVRGGEAAKWGAT 284
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 34 GTALQSIAKRPRTITTESYMKDA--FANYAGYLNEL---NEKRERVVKSSRDITINSKKV 88
G ++ A R R I +D+ + Y NEL +++ ER+VK SRDITI SK++
Sbjct: 6 GAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRI 65
Query: 89 IF 90
IF
Sbjct: 66 IF 67
>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 269
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 137 DYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKM 196
+Y+LGL+DLTGEL R I + G+ + C+ + Y + ++ K+
Sbjct: 168 EYILGLSDLTGELXRRCINSLGSGDTDTCLDTCKALQHFYS--GYISLNCQRARELWRKI 225
Query: 197 DTMLQSVLKIENACLSVHVRGSEYTLLGSS 226
T QSVLK EN C +V VRG E G++
Sbjct: 226 TTXKQSVLKAENVCYNVKVRGGEAAKWGAT 255
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
Query: 63 YLNEL---NEKRERVVKSSRDITINSKKVIF 90
Y NEL +++ ER+VK SRDITI SK++IF
Sbjct: 8 YSNELIXKHDRHERIVKLSRDITIESKRIIF 38
>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po
Length = 249
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 129 EPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDI---YRELTLVVPL 185
E ++V DYLLG+ L EL R A ++ G+ E I F D+ +R L L
Sbjct: 146 EGFHLDVEDYLLGILQLASELSRFATNSVTXGDYERPLNISHFIGDLNTGFRLLNL---- 201
Query: 186 MDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 217
N ++ + D + V KIE V +RG
Sbjct: 202 --KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 231
>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 235
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 129 EPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDI---YRELTLVVPL 185
E ++V DYLLG+ L EL R A ++ G+ E + I F D+ +R L L
Sbjct: 132 EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERSLNISHFIGDLNTGFRLLNL---- 187
Query: 186 MDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 217
N ++ + D + V KIE V +RG
Sbjct: 188 --KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 217
>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|B Chain B, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|C Chain C, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|D Chain D, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 247
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 129 EPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDI---YRELTLVVPL 185
E ++V DYLLG+ L EL R A ++ G+ E + I F D+ +R L L
Sbjct: 144 EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERSLNISHFIGDLNTGFRLLNL---- 199
Query: 186 MDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 217
N ++ + D + V KIE V +RG
Sbjct: 200 --KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 229
>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
pdb|3RIU|B Chain B, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 218
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 129 EPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDI---YRELTLVVPL 185
E ++V DYLLG+ L EL R A ++ G+ E I F D+ +R L L
Sbjct: 133 EGFHLDVEDYLLGILQLASELSRFATNSVTXGDYERPLNISHFIGDLNTGFRLLNL---- 188
Query: 186 MDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 217
N ++ + D + V KIE V +RG
Sbjct: 189 --KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 218
>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|B Chain B, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|C Chain C, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|D Chain D, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|E Chain E, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|F Chain F, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|G Chain G, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|H Chain H, Low Resolution Structure Of Drosophila Translin
Length = 255
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 129 EPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDI---YRELTLVVPL 185
E ++V DYLLG+ L EL R A ++ G+ E I F D+ +R L L
Sbjct: 152 EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNL---- 207
Query: 186 MDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 217
N ++ + D + V KIE V +RG
Sbjct: 208 --KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 237
>pdb|3ZC1|A Chain A, Crystal Structure Of Afc3po
pdb|3ZC1|B Chain B, Crystal Structure Of Afc3po
pdb|3ZC1|C Chain C, Crystal Structure Of Afc3po
pdb|3ZC1|D Chain D, Crystal Structure Of Afc3po
pdb|3ZC1|E Chain E, Crystal Structure Of Afc3po
pdb|3ZC1|F Chain F, Crystal Structure Of Afc3po
pdb|3ZC1|G Chain G, Crystal Structure Of Afc3po
pdb|3ZC1|H Chain H, Crystal Structure Of Afc3po
Length = 199
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 131 LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDN-N 189
L++ +L G AD GEL R A+ ++ +G+ + AE++ IY L D
Sbjct: 104 LEVTPAAFLNGFADAVGELRRYALTKLIEGDFKSAERMLEVMEKIYERLMEFTTFPDKLV 163
Query: 190 SDMKTKMDT 198
S ++ K+D
Sbjct: 164 SGLRKKLDV 172
>pdb|3ZC0|A Chain A, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|B Chain B, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|C Chain C, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|D Chain D, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|E Chain E, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|F Chain F, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|G Chain G, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|H Chain H, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|I Chain I, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|J Chain J, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|K Chain K, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|L Chain L, Structure Of Afc3po - Duplex Rna Complex
Length = 199
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 131 LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDN-N 189
L++ +L G A GEL R A+ ++ +G+ + AE++ IY L D
Sbjct: 104 LEVTPAAFLNGFAAAVGELRRYALTKLIEGDFKSAERMLEVMEKIYERLMEFTTFPDKLV 163
Query: 190 SDMKTKMDT 198
S ++ K+D
Sbjct: 164 SGLRKKLDV 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,428,209
Number of Sequences: 62578
Number of extensions: 175587
Number of successful extensions: 413
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 24
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)