Query 026387
Match_columns 239
No_of_seqs 126 out of 386
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3066 Translin-associated pr 100.0 3.6E-51 7.9E-56 357.1 13.5 196 41-238 23-271 (271)
2 PF01997 Translin: Translin fa 100.0 1.8E-48 4E-53 337.1 12.9 150 68-218 1-200 (200)
3 PRK14562 haloacid dehalogenase 100.0 3.8E-44 8.3E-49 312.2 16.9 152 53-219 2-196 (204)
4 KOG3067 Translin family protei 100.0 1.7E-37 3.6E-42 266.3 13.8 162 54-219 5-217 (226)
5 COG2178 Predicted RNA-binding 100.0 4.8E-34 1E-38 246.5 17.4 143 54-211 2-186 (204)
6 PF06892 Phage_CP76: Phage reg 70.3 27 0.00059 29.6 7.8 48 134-182 89-136 (162)
7 PF11473 B2: RNA binding prote 36.5 48 0.001 24.7 3.2 44 165-213 12-55 (73)
8 PF07361 Cytochrom_B562: Cytoc 31.8 1.5E+02 0.0034 23.1 5.7 44 133-177 53-96 (103)
9 PF10157 DUF2365: Uncharacteri 31.0 1.6E+02 0.0034 24.9 5.9 40 164-210 110-149 (149)
10 PF15605 Toxin_52: Putative to 29.3 1.5E+02 0.0033 23.7 5.2 70 132-210 20-101 (103)
11 cd02682 MIT_AAA_Arch MIT: doma 28.7 2.5E+02 0.0055 21.0 6.3 69 142-210 2-70 (75)
12 PF03918 CcmH: Cytochrome C bi 28.6 48 0.001 27.8 2.4 42 143-186 56-97 (148)
13 PF04124 Dor1: Dor1-like famil 27.1 5.1E+02 0.011 24.0 10.7 26 155-180 115-140 (338)
14 PF04678 DUF607: Protein of un 26.8 4E+02 0.0086 22.7 9.6 68 51-118 60-155 (180)
15 PF10046 BLOC1_2: Biogenesis o 26.2 2.5E+02 0.0055 21.6 6.0 72 135-213 8-85 (99)
16 cd07630 BAR_SNX_like The Bin/A 24.3 4.8E+02 0.01 22.7 11.9 78 54-153 3-80 (198)
17 PF00540 Gag_p17: gag gene pro 24.2 93 0.002 26.2 3.3 68 138-210 28-107 (140)
18 TIGR03147 cyt_nit_nrfF cytochr 23.5 76 0.0017 26.2 2.7 42 144-187 57-98 (126)
19 PF15011 CK2S: Casein Kinase 2 23.2 3.1E+02 0.0067 23.3 6.5 37 51-87 67-103 (168)
20 PRK10144 formate-dependent nit 21.4 88 0.0019 25.8 2.6 43 143-187 56-98 (126)
21 PRK13386 fliH flagellar assemb 21.4 2.4E+02 0.0053 25.1 5.7 13 128-140 164-176 (236)
22 PF05278 PEARLI-4: Arabidopsis 21.1 1.8E+02 0.0039 27.0 4.9 35 135-169 124-158 (269)
23 PRK07571 bidirectional hydroge 20.7 3E+02 0.0065 23.5 5.9 83 55-151 19-113 (169)
24 PF07064 RIC1: RIC1; InterPro 20.5 6.5E+02 0.014 22.8 10.5 99 54-178 140-252 (258)
No 1
>KOG3066 consensus Translin-associated protein X [General function prediction only]
Probab=100.00 E-value=3.6e-51 Score=357.09 Aligned_cols=196 Identities=42% Similarity=0.605 Sum_probs=180.4
Q ss_pred ccCCCccCCcchHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 026387 41 AKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV---------------------------- 92 (239)
Q Consensus 41 ~~~~~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L---------------------------- 92 (239)
|+..+||++.+++.+.|.+|+++|++.||+||||+|+|||||.+||++||+|
T Consensus 23 pqkartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~~e~~l~~~~~~le~vr~k~f 102 (271)
T KOG3066|consen 23 PQKARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGFPEPKLFDRTSILEKVRHKEF 102 (271)
T ss_pred cccccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCCcchhhhhhhhHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999998
Q ss_pred -----------------------HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHH
Q 026387 93 -----------------------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGEL 149 (239)
Q Consensus 93 -----------------------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGEL 149 (239)
||||||++|++||.+|+|.+.+||+..+.++..+ .++.|++-||++|+|||||||
T Consensus 103 ~~l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~~--~rl~in~iDYvLGvaDlTGEl 180 (271)
T KOG3066|consen 103 ESLKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDSS--FRLSINFIDYVLGVADLTGEL 180 (271)
T ss_pred HHHHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCCc--cceeeeHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999887766554 568999999999999999999
Q ss_pred HHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhheeeEeccccc-CCCCCCc
Q 026387 150 MRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYT-LLGSSDP 228 (239)
Q Consensus 150 mR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y~l~vRg~e~~-~~~~~~~ 228 (239)
||+||+++.+|+++.+.++++|+|.||.++..+.+......++.+|+.+|+||+-|||++||.++|||+|++ ..++++|
T Consensus 181 MRm~I~~~s~g~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~KvEnaCys~~vRg~e~~~l~l~~~~ 260 (271)
T KOG3066|consen 181 MRMLITNGSKGSIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISKVENACYSKIVRGAEKRYLNLEVDT 260 (271)
T ss_pred HHHHHhcCcCcchhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHHHHhHHHHHHhcccccccccccccc
Confidence 999999999999999999999999999999998765533679999999999999999999999999999999 4458888
Q ss_pred -ccccCCCCCC
Q 026387 229 -SFLMGVPDMQ 238 (239)
Q Consensus 229 -~~~~~~~~~~ 238 (239)
..+.++.|++
T Consensus 261 ~~~~~e~~d~e 271 (271)
T KOG3066|consen 261 ATPPEEKRDRE 271 (271)
T ss_pred cCCchhhhhcC
Confidence 7777777654
No 2
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=100.00 E-value=1.8e-48 Score=337.13 Aligned_cols=150 Identities=43% Similarity=0.649 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------HHHHHHH
Q 026387 68 NEKRERVVKSSRDITINSKKVIFQV------------------------------------------------QEYVEAA 99 (239)
Q Consensus 68 ~d~REriik~SRdIt~~SKk~If~L------------------------------------------------QEyvEA~ 99 (239)
||+||+|+|+|||||+.||++||+| ||||||+
T Consensus 1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~~~~~l~~~~~~~~~~y~~~~s~~lQE~vEa~ 80 (200)
T PF01997_consen 1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKKLLKQLAELPGHPFYRYHGAYSPGLQEYVEAI 80 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHCHSHHHHHCTTCGHHHHGGGTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999998 9999999
Q ss_pred HHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHh
Q 026387 100 TFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYREL 179 (239)
Q Consensus 100 sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f 179 (239)
+|++||++|+|+|++|+++.|.. .......|+|+++|||+||+||||||||+|||+++.||++.|.++++||++||.+|
T Consensus 81 ~f~~~l~~~~L~t~~ev~~~l~~-~~~~~~~~~v~~~dYL~Gl~DltGEL~R~ai~~v~~gd~~~~~~i~~f~~~l~~~~ 159 (200)
T PF01997_consen 81 SFYHYLETGRLLTPEEVGEILGF-SEDDEDRFHVTPEDYLLGLADLTGELMRYAINSVTKGDYERPEKILEFMRELYSGF 159 (200)
T ss_dssp HHHHHHHHSSS--HHHHHHHCTC-BSSTSCSSB--HHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHhh-ccccccceecCHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999876644 33446689999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCC--CCCcchhhHHHHHHHHHHHHhhhheeeEecc
Q 026387 180 TLVVPLMD--NNSDMKTKMDTMLQSVLKIENACLSVHVRGS 218 (239)
Q Consensus 180 ~~L~~~lk--~n~~LRkK~D~lk~slkKvE~v~Y~l~vRg~ 218 (239)
..|.++.. .|++||||+|++||+|+|+|++||+++||||
T Consensus 160 ~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~~y~l~vRgs 200 (200)
T PF01997_consen 160 QLLNLPDAIVKNDELRKKFDVLKYSLKKVEEVVYDLSVRGS 200 (200)
T ss_dssp HTSGGTTGS--SHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCcchhhcccchhHHHHHHHHHHHHHHHHHHhHhhhhcCC
Confidence 99955321 2899999999999999999999999999997
No 3
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=312.18 Aligned_cols=152 Identities=29% Similarity=0.328 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q 026387 53 MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV---------------------------------------- 92 (239)
Q Consensus 53 ~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L---------------------------------------- 92 (239)
+.++|++++++||++|++||+|+|.||||++.||++||++
T Consensus 2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~~~~a~~~l~~a~~~~~~l~~~~~~~~~~~y~~~~~~ 81 (204)
T PRK14562 2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGDFEEAEKLLKEAEELVKELKELLKDHPELYYAGYVGT 81 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhcch
Confidence 4688999999999999999999999999999999999998
Q ss_pred --HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHH
Q 026387 93 --QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICR 170 (239)
Q Consensus 93 --QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~ 170 (239)
||||||++|++|+++|+|+|++| ++|+++|||+||+|+||||||+|+|+++.||++.|.++++
T Consensus 82 ~lQEyvEA~~f~~~l~~~~l~s~ee---------------l~v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~ 146 (204)
T PRK14562 82 ALQEYVEALLVYSLLFENKIPSPEE---------------LGVPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLE 146 (204)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHH---------------cCCCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999998 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHH-HhhhheeeEeccc
Q 026387 171 FSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKI-ENACLSVHVRGSE 219 (239)
Q Consensus 171 fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKv-E~v~Y~l~vRg~e 219 (239)
||++||.+|..|.++.+..++||||+|++||+|+|+ ++++|.+..++++
T Consensus 147 fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~lekt~~d~~~~~~~~~l~ 196 (204)
T PRK14562 147 IMEEIYEFLMTLDYPDAITPGLRRKQDVARSLLERTRGDLTNAILNRKLE 196 (204)
T ss_pred HHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999443222359999999999999999 6677776665543
No 4
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=266.27 Aligned_cols=162 Identities=22% Similarity=0.404 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q 026387 54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV----------------------------------------- 92 (239)
Q Consensus 54 ~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L----------------------------------------- 92 (239)
+++|.++++++|+.++.||+|.+.++.|...++.+...|
T Consensus 5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyy 84 (226)
T KOG3067|consen 5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPPAGQYY 84 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCccceE
Confidence 489999999999999999999999999999998887766
Q ss_pred ----------HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhhhcCCch
Q 026387 93 ----------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGEL 162 (239)
Q Consensus 93 ----------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~ 162 (239)
|..|...+|++||++|.|+|++++.+ +++++.+..+.||++++|||.|++-|++||.|+++|+|+.|||
T Consensus 85 ry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~e-ilgl~p~~s~~FhLdvedyl~gvl~L~seLsR~svNsVtaGdY 163 (226)
T KOG3067|consen 85 RYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTE-ILGLEPDRSEGFHLDVEDYLSGVLFLASELSRQSVNSVTAGDY 163 (226)
T ss_pred EecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHH-HhcCCccccccceeeHHHHHHHHHHHHHHHHHhhhccccccCc
Confidence 99999999999999999999999965 5678766677899999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhheeeEeccc
Q 026387 163 EFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE 219 (239)
Q Consensus 163 ~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y~l~vRg~e 219 (239)
++|.++.+|+.++|.+|.+| |+| ||+||||+|+|||+|+|+|+++||++|||+-
T Consensus 164 ~~Pl~v~~fi~dlhs~FrlL--nLK-ndsLRK~fDgLkYDlkrvEeVvYDv~Irgl~ 217 (226)
T KOG3067|consen 164 HRPLHVSNFINDLHSGFRLL--NLK-NDSLRKRFDGLKYDLKRVEEVVYDVSIRGLV 217 (226)
T ss_pred CCchHHHHHHhhhcccceee--ecc-chhhhccccchhhhHHhhhhhheeeeeeccc
Confidence 99999999999999999999 998 9999999999999999999999999999984
No 5
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-34 Score=246.46 Aligned_cols=143 Identities=30% Similarity=0.416 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q 026387 54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV----------------------------------------- 92 (239)
Q Consensus 54 ~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L----------------------------------------- 92 (239)
.+.+.++++.|+++++.||+++++||+|+++|+.+||++
T Consensus 2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a 81 (204)
T COG2178 2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTA 81 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcch
Confidence 467999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHH
Q 026387 93 -QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRF 171 (239)
Q Consensus 93 -QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~f 171 (239)
||||||.+|+.|++++.+++++|+ +|++.+|++|+||++|||||++++.+..|+++.|++.++|
T Consensus 82 ~QEyvEA~~l~~~l~~~~~ps~~EL---------------~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ 146 (204)
T COG2178 82 LQEYVEATLLYSILKDGRLPSPEEL---------------GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKF 146 (204)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHc---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999999999999984 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhh
Q 026387 172 SRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACL 211 (239)
Q Consensus 172 m~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y 211 (239)
|++||..++.+.++-+..++||||+|++|+.++|...-+.
T Consensus 147 ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~dl~ 186 (204)
T COG2178 147 MEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKSDLF 186 (204)
T ss_pred HHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999966666677999999999999999986443
No 6
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=70.32 E-value=27 Score=29.61 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhh
Q 026387 134 NVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLV 182 (239)
Q Consensus 134 ~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L 182 (239)
++.+|++...--.|||+|-+...+..|.+...++ -..+++++..+..|
T Consensus 89 ~l~~~~l~~~a~~Gela~~a~ea~~dgrit~~er-~~i~~~a~~ai~~l 136 (162)
T PF06892_consen 89 SLPERVLKATAEVGELAREALEALSDGRITRSER-NRIIKEANAAIRSL 136 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHH-HHHHHHHHHHHHHH
Confidence 8899999999999999999999999999888766 66777777776654
No 7
>PF11473 B2: RNA binding protein B2; InterPro: IPR024377 Protein B2 binds double-strand RNA (dsRNA) with high affinity and suppresses the host RNA silencing-based antiviral response. B2 is expressed by the insect Flock House virus (FHV) as a counter-defense mechanism against antiviral RNA silencing during infection. In vitro, B2 binds to dsRNA as a dimer and inhibits the cleavage of it by Dicer. B2 blocks cleavage of the FHV genome by Dicer and also the incorporation of FHV small interfering RNAs into the RNA-induced silencing complex [].; PDB: 2AZ2_A 2B9Z_A 2AZ0_A.
Probab=36.47 E-value=48 Score=24.73 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhee
Q 026387 165 AEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSV 213 (239)
Q Consensus 165 ~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y~l 213 (239)
|.+|+..++.+-+.. |... ....||-+|.++-+|.|.|.+|+..
T Consensus 12 p~~iq~aV~~~~~~~----~~~~-p~~V~kDLdn~kaCL~K~e~T~~r~ 55 (73)
T PF11473_consen 12 PDRIQQAVEAAIDMS----YQCA-PNNVRKDLDNYKACLNKAEATVFRA 55 (73)
T ss_dssp HHHHHHHHHHHHCS-----GTTS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----cccC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666654332 2221 2367999999999999999998854
No 8
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=31.83 E-value=1.5e+02 Score=23.07 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=35.5
Q ss_pred cChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHH
Q 026387 133 INVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYR 177 (239)
Q Consensus 133 V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~ 177 (239)
....+|.-|+-.|++|+-. +-..+-.|+++.|...+.-|.++-.
T Consensus 53 ~~~~~Y~~Gl~~li~~id~-a~~~~~~G~l~~AK~~l~~l~~lR~ 96 (103)
T PF07361_consen 53 AEVKDYQEGLDKLIDQIDK-AEALAEAGKLDEAKAALKKLDDLRK 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3357999999999999875 4457789999999999887777644
No 9
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=30.97 E-value=1.6e+02 Score=24.89 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhh
Q 026387 164 FAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENAC 210 (239)
Q Consensus 164 ~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~ 210 (239)
.-+.+.+-+++|-..+..+ ..|.+++-.+|..|.++|.+|
T Consensus 110 ~~y~liakceELn~~M~~v-------~~La~qIK~Ik~~lD~lE~~~ 149 (149)
T PF10157_consen 110 SMYTLIAKCEELNESMKPV-------YKLAQQIKDIKKLLDLLESLC 149 (149)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 3445556666666666655 467889999999999999875
No 10
>PF15605 Toxin_52: Putative toxin 52
Probab=29.29 E-value=1.5e+02 Score=23.74 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=44.3
Q ss_pred ccChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhh----hhcCCCCCCCc--------chhhHHHH
Q 026387 132 QINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELT----LVVPLMDNNSD--------MKTKMDTM 199 (239)
Q Consensus 132 ~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~----~L~~~lk~n~~--------LRkK~D~l 199 (239)
+++..||-..+=||.||..| ..+ -.++.-++=|++-|.+|. .|..-++ |.. +.+|++..
T Consensus 20 hltd~D~sgt~Rdl~G~pVp-------Kp~-GgywdHlqEm~da~~GL~n~~~~le~~L~-np~l~~~~r~~lq~~l~ea 90 (103)
T PF15605_consen 20 HLTDMDFSGTLRDLQGNPVP-------KPD-GGYWDHLQEMQDAYRGLVNRKRTLEGSLK-NPNLSGRTRELLQSKLNEA 90 (103)
T ss_pred hccccchHHHHHHHcCCccc-------CCC-CCccHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHHH
Confidence 57777888888888887643 322 223444555555555553 2211122 344 78999999
Q ss_pred HHHHHHHHhhh
Q 026387 200 LQSVLKIENAC 210 (239)
Q Consensus 200 k~slkKvE~v~ 210 (239)
-+-++|||+.+
T Consensus 91 ~~~l~kiE~~~ 101 (103)
T PF15605_consen 91 NNYLDKIEDFF 101 (103)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 11
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=28.68 E-value=2.5e+02 Score=20.99 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=43.6
Q ss_pred HHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhh
Q 026387 142 LADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENAC 210 (239)
Q Consensus 142 L~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~ 210 (239)
|.+.+-++.+-||.+=..|++++|..+.+-==++-..+..+.|+-+-...+|.|+..-..-++.++..+
T Consensus 2 L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 2 LEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677888889999999999999877642222223333344433223456777777777666666653
No 12
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=28.60 E-value=48 Score=27.79 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=33.7
Q ss_pred HHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCC
Q 026387 143 ADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLM 186 (239)
Q Consensus 143 ~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~l 186 (239)
++++.+|++..-+.+..|.-+ .+|.++|.+-|..+.+..|+.
T Consensus 56 a~~A~dmR~~I~~~l~~G~s~--~eI~~~~v~rYG~~Vl~~Pp~ 97 (148)
T PF03918_consen 56 APIARDMRREIREMLAEGKSD--EEIIDYFVERYGEFVLYEPPF 97 (148)
T ss_dssp SHHHHHHHHHHHHHHHHT--H--HHHHHHHHHHHTTT-EES--S
T ss_pred cHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCcceeecCCC
Confidence 889999999999999999765 789999999999998887765
No 13
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=27.07 E-value=5.1e+02 Score=24.03 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.8
Q ss_pred hhhcCCchHhHHHHHHHHHHHHHHhh
Q 026387 155 GRISDGELEFAEKICRFSRDIYRELT 180 (239)
Q Consensus 155 n~v~~Gd~~~~~~i~~fm~~Iy~~f~ 180 (239)
.||++|.|++|..+..+++.+...+.
T Consensus 115 ~ci~~g~y~eALel~~~~~~L~~~~~ 140 (338)
T PF04124_consen 115 TCIRNGNYSEALELSAHVRRLQSRFP 140 (338)
T ss_pred HHHhcccHhhHHHHHHHHHHHHHhcc
Confidence 77789999999999999988776653
No 14
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=26.83 E-value=4e+02 Score=22.66 Aligned_cols=68 Identities=7% Similarity=0.001 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHH
Q 026387 51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV----------------------------QEYVEAATFC 102 (239)
Q Consensus 51 ~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L----------------------------QEyvEA~sf~ 102 (239)
..+.+..+.++++|+..+..+.+|-+.++.-........+++ -=-...+.+.
T Consensus 60 ~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~e~sWDvMEPVTYfv~~~~~i~~y~ 139 (180)
T PF04678_consen 60 RQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFWEYSWDVMEPVTYFVGYGTSILGYA 139 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHhHHHHHHHHH
Confidence 345677789999999999999998888886655554444443 1122234455
Q ss_pred HHhhcCCCCCHHHHhh
Q 026387 103 KFCRTGTLLDLEELNA 118 (239)
Q Consensus 103 ~yL~~g~Llt~eev~~ 118 (239)
+|+.+++=++++.+-+
T Consensus 140 yfl~t~re~sy~~~~~ 155 (180)
T PF04678_consen 140 YFLYTRREYSYESVFQ 155 (180)
T ss_pred HHHHhCCCCChHHHHH
Confidence 6778888888887754
No 15
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=26.20 E-value=2.5e+02 Score=21.57 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=45.4
Q ss_pred hhhHHHHHHHhHHHHHHHH--hhhhcCCchHh----HHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHh
Q 026387 135 VFDYLLGLADLTGELMRLA--IGRISDGELEF----AEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIEN 208 (239)
Q Consensus 135 ~~DYLlGL~DLtGELmR~a--in~v~~Gd~~~----~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~ 208 (239)
...|+.|=.+.+.+-.++- +|..+...|.. +..+-.+++++-.....| .+..+++|.+-.+|.++|.
T Consensus 8 ~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l-------~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 8 VSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL-------QPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4577777777776666653 45555544433 233344454444444434 2347889999999999999
Q ss_pred hhhee
Q 026387 209 ACLSV 213 (239)
Q Consensus 209 v~Y~l 213 (239)
++|.|
T Consensus 81 ~v~~L 85 (99)
T PF10046_consen 81 TVYEL 85 (99)
T ss_pred HHHHH
Confidence 98865
No 16
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.26 E-value=4.8e+02 Score=22.72 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCccc
Q 026387 54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQI 133 (239)
Q Consensus 54 ~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~LQEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V 133 (239)
.+-|+..+.++++++..=.++.+..-.++..-+.+..++-++.-++....=.+.+++ .
T Consensus 3 D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~----------------------~ 60 (198)
T cd07630 3 DEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASV----------------------V 60 (198)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch----------------------H
Confidence 467999999999998888888888888888888877777666666654433332211 1
Q ss_pred ChhhHHHHHHHhHHHHHHHH
Q 026387 134 NVFDYLLGLADLTGELMRLA 153 (239)
Q Consensus 134 ~~~DYLlGL~DLtGELmR~a 153 (239)
.....|.+++|+.+.+.+.-
T Consensus 61 ~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 61 ALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34677777887777766553
No 17
>PF00540 Gag_p17: gag gene protein p17 (matrix protein); InterPro: IPR000071 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from immunodeficiency lentiviruses, such as Human immunodeficiency virus (HIV) and Simian immunodeficiency virus (SIV-cpz) []. The structure of the HIV protein consists of 5 alpha helices, a short 3.10 helix and a 3-stranded mixed beta-sheet [].; GO: 0005198 structural molecule activity; PDB: 2JMG_A 1L6N_A 2NV3_A 1ED1_A 1ECW_A 2C7U_C 2H3F_A 1HIW_S 2H3V_A 2H3I_A ....
Probab=24.17 E-value=93 Score=26.19 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHH-HHHhHHHHHHHHhhhhcCCchHhHHHHHHH-----------HHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHH
Q 026387 138 YLLG-LADLTGELMRLAIGRISDGELEFAEKICRF-----------SRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLK 205 (239)
Q Consensus 138 YLlG-L~DLtGELmR~ain~v~~Gd~~~~~~i~~f-----------m~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkK 205 (239)
|.+. |.=.+.||=|||+|---...-+.|.+|+.- ++.||+-...| -+- --|-++.-.+..++|
T Consensus 28 Y~lKHlVWasrELeRFalnp~LLeT~EGC~qIl~qL~P~l~TGSeeLkSL~NtvavL--yCV---H~~i~VkDTkEAl~k 102 (140)
T PF00540_consen 28 YRLKHLVWASRELERFALNPGLLETAEGCQQILEQLQPLLPTGSEELKSLFNTVAVL--YCV---HQRIEVKDTKEALDK 102 (140)
T ss_dssp E-HHHHHHHHHHHHHTTSSGGGGCSHHHHHHHHHHHGGGCTTSHHHHHHHHHHHHHH--HHH---HTT---SBHHHHHHH
T ss_pred eecceeeccccccccccccccccchhhhhhcceeccCCCCcCCccccchhhhcccee--EEE---ecCcccccHHHHHHH
Confidence 5444 344567999999997766666777776533 34444444333 110 013333446777777
Q ss_pred HHhhh
Q 026387 206 IENAC 210 (239)
Q Consensus 206 vE~v~ 210 (239)
||+.+
T Consensus 103 vee~~ 107 (140)
T PF00540_consen 103 VEEEQ 107 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 18
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=23.53 E-value=76 Score=26.17 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=37.3
Q ss_pred HhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCC
Q 026387 144 DLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMD 187 (239)
Q Consensus 144 DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk 187 (239)
+++.+|++..-..+..|+-+ .+|.+||.+=|..|.++.|+.+
T Consensus 57 ~iA~dmR~~Vr~~i~~G~Sd--~eI~~~~v~RYG~~Vly~Pp~~ 98 (126)
T TIGR03147 57 PIAYDLRHEVYSMVNEGKSN--QQIIDFMTARFGDFVLYNPPFK 98 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeEEecCCCC
Confidence 78899999999999999875 4899999999999999988763
No 19
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=23.23 E-value=3.1e+02 Score=23.31 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026387 51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKK 87 (239)
Q Consensus 51 ~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk 87 (239)
..+..+|.++++.|++.++.|..+-+..+++.+...+
T Consensus 67 ~ale~vl~~L~e~l~~l~~v~~~l~~~~~~~~~l~~~ 103 (168)
T PF15011_consen 67 EALETVLAKLRETLEELQKVRDSLSRQVRDVFQLYEQ 103 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778999999999999999999999999998777663
No 20
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=21.38 E-value=88 Score=25.81 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCC
Q 026387 143 ADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMD 187 (239)
Q Consensus 143 ~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk 187 (239)
++++.+|++..-..+..|+-+ .+|.+||.+=|..|.++.|+++
T Consensus 56 a~iA~dmR~~Vr~~i~~G~sd--~eI~~~~v~RYG~~Vl~~Pp~~ 98 (126)
T PRK10144 56 APVAVSMRHQVYSMVAEGKSE--VEIIGWMTERYGDFVRYNPPLT 98 (126)
T ss_pred CHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeEEecCCCC
Confidence 378899999999999999775 5899999999999999988764
No 21
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=21.36 E-value=2.4e+02 Score=25.13 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=9.5
Q ss_pred CCCcccChhhHHH
Q 026387 128 IEPLQINVFDYLL 140 (239)
Q Consensus 128 ~~~~~V~~~DYLl 140 (239)
...++|+|.||=.
T Consensus 164 ~v~I~vnP~D~~~ 176 (236)
T PRK13386 164 QLKVHLNPEEFGR 176 (236)
T ss_pred CeEEEECHHHHHH
Confidence 3458999999853
No 22
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.07 E-value=1.8e+02 Score=27.00 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.3
Q ss_pred hhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHH
Q 026387 135 VFDYLLGLADLTGELMRLAIGRISDGELEFAEKIC 169 (239)
Q Consensus 135 ~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~ 169 (239)
-.-||-.||+++-||--..+..++.-++..+..++
T Consensus 124 RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l 158 (269)
T PF05278_consen 124 RSYYLECLCDIIQELQSTPLKELSESDLKEMIATL 158 (269)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHH
Confidence 46899999999999976667777776665544443
No 23
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=20.70 E-value=3e+02 Score=23.53 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH----HHHHHHH--------HHHHHHHHHHHHhhcCCCCCHHHHhhccCC
Q 026387 55 DAFANYAGYLNELNEKRERVVKSSRDITINS----KKVIFQV--------QEYVEAATFCKFCRTGTLLDLEELNAGLLP 122 (239)
Q Consensus 55 ~~F~~~~~~Ld~~~d~REriik~SRdIt~~S----Kk~If~L--------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~ 122 (239)
+.++.+.+-++.+..+|+.++.+-++|...- ..++..+ -+.-+.++||+++.....-.+
T Consensus 19 ~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v~~a~V~gVatFY~~f~~~P~Gk~--------- 89 (169)
T PRK07571 19 KRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEH--------- 89 (169)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHHHHHccccCcCCCCCE---------
Confidence 5677788888888889999999999998663 3333333 566678899988864322110
Q ss_pred CCCCCCCCcccChhhHHHHHHHhHHHHHH
Q 026387 123 LSDPAIEPLQINVFDYLLGLADLTGELMR 151 (239)
Q Consensus 123 l~~~~~~~~~V~~~DYLlGL~DLtGELmR 151 (239)
...+-....-|+.|=-++...|.+
T Consensus 90 -----~I~VC~g~aC~~~G~~~ll~~l~~ 113 (169)
T PRK07571 90 -----TCVVCTGTACYVKGSAAILEDLEN 113 (169)
T ss_pred -----EEEEcCChHHHHCCcHHHHHHHHH
Confidence 112445667788887776666644
No 24
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=20.52 E-value=6.5e+02 Score=22.85 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHhhcCCCCCHHHHhhc
Q 026387 54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV----Q----------EYVEAATFCKFCRTGTLLDLEELNAG 119 (239)
Q Consensus 54 ~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L----Q----------EyvEA~sf~~yL~~g~Llt~eev~~~ 119 (239)
.+.....-+.++...+..|-++...|.+....=+.+|.. + ++=.|..+.-.+++..
T Consensus 140 ~~~L~~v~~ll~~f~~~l~Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa~yLlVl~~~e---------- 209 (258)
T PF07064_consen 140 DALLPRVISLLQEFPEYLEIVVNCARKTEVRYWPYLFDYLGSPRDLFEECLENGNLKTAASYLLVLQNLE---------- 209 (258)
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHcCcHHHHHHHHHHHHhcC----------
Confidence 345555566666666777778888888887777777766 2 2333333333332111
Q ss_pred cCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHH
Q 026387 120 LLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRE 178 (239)
Q Consensus 120 l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~ 178 (239)
+.+... .--..+.+-+|.+.|++ .|+++.|.++++|+..|-..
T Consensus 210 ------------~~~~~~-~~~~~~~al~LL~~a~~---~~~w~Lc~eL~RFL~~ld~~ 252 (258)
T PF07064_consen 210 ------------GSSVVK-DEESRQCALRLLVMALE---SGDWDLCFELVRFLKALDPE 252 (258)
T ss_pred ------------Ccchhh-hHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhCcc
Confidence 011111 22334445556666555 79999999999999988443
Done!