Query 026387
Match_columns 239
No_of_seqs 126 out of 386
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb5_K Translin-associated pro 100.0 1.9E-57 6.6E-62 412.6 18.0 189 36-227 17-274 (290)
2 3axj_B TRAX, translin associat 100.0 2.2E-54 7.6E-59 393.8 16.0 180 45-226 22-284 (298)
3 3axj_A GM27569P, translin; tra 100.0 7E-54 2.4E-58 381.9 17.6 174 50-228 17-241 (249)
4 1j1j_A Translin; testis/brain 100.0 1.2E-53 4.2E-58 378.5 17.1 167 50-220 12-231 (240)
5 2kw0_A CCMH protein; oxidoredu 53.4 8.6 0.00029 28.9 2.7 42 144-187 40-81 (90)
6 2hl7_A Cytochrome C-type bioge 47.1 11 0.00037 27.9 2.4 41 144-186 43-83 (84)
7 1gak_A SP18, fertilization pro 42.7 13 0.00046 29.7 2.4 23 67-89 49-71 (141)
8 3o6x_A Glutamine synthetase; t 41.9 6.6 0.00023 39.5 0.6 40 53-92 493-536 (729)
9 3hnw_A Uncharacterized protein 38.3 98 0.0033 24.4 6.9 66 135-214 26-95 (138)
10 3qf7_D MRE11; ABC-ATPase, ATPa 29.6 84 0.0029 20.6 4.2 34 55-88 8-41 (50)
11 3acx_A Dehydrosqualene synthas 27.3 2.4E+02 0.0083 24.1 8.3 68 91-180 109-184 (293)
12 3g80_A Protein B2; RNA-binding 26.5 1.1E+02 0.0039 22.8 5.0 46 165-213 34-79 (97)
13 2k0n_A Mediator of RNA polymer 25.5 36 0.0012 25.1 2.1 50 154-206 26-79 (85)
14 2gol_A Matrix protein P17 (MA) 24.7 1E+02 0.0034 24.6 4.7 36 142-180 35-70 (133)
15 2rpa_A Katanin P60 ATPase-cont 24.2 1.6E+02 0.0053 21.2 5.3 55 146-205 12-67 (78)
16 1xwm_A PHOU, phosphate uptake 22.9 1.3E+02 0.0043 24.2 5.3 45 136-180 116-163 (217)
17 1wfd_A Hypothetical protein 15 21.6 1.7E+02 0.0058 21.2 5.3 66 142-208 11-77 (93)
No 1
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=100.00 E-value=1.9e-57 Score=412.55 Aligned_cols=189 Identities=35% Similarity=0.595 Sum_probs=160.4
Q ss_pred cccccccCC-CccCCcchHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 026387 36 ALQSIAKRP-RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV---------------------- 92 (239)
Q Consensus 36 ~~~~~~~~~-~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L---------------------- 92 (239)
|+++++++. ..+++++++.++|++|+++||++||+||||+|+|||||++||++||+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~ 96 (290)
T 3qb5_K 17 NFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDG 96 (290)
T ss_dssp --------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred CCccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 466665544 668889999999999999999999999999999999999999999998
Q ss_pred ----------------------------HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCC---------------
Q 026387 93 ----------------------------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIE--------------- 129 (239)
Q Consensus 93 ----------------------------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~--------------- 129 (239)
||||||++|++||++|+|+|++|+++.|.....++..
T Consensus 97 i~~~~~~La~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 176 (290)
T 3qb5_K 97 VRQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFG 176 (290)
T ss_dssp HHHHHHHHHHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC--------------------
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccccccccccccccccc
Confidence 9999999999999999999999998876433222211
Q ss_pred --CcccChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCCCCC-cchhhHHHHHHHHHHH
Q 026387 130 --PLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS-DMKTKMDTMLQSVLKI 206 (239)
Q Consensus 130 --~~~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~-~LRkK~D~lk~slkKv 206 (239)
.|+|+++|||+||+||||||||||||+|+.||++.|++||+||++||++|.+| +++ |+ +||||+|+|||||+||
T Consensus 177 ~~~~~V~~eDYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--~~~-~~~~LrKK~d~lk~svkKv 253 (290)
T 3qb5_K 177 TWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFI--GNT-GPYEVSKKLYTLKQSLAKV 253 (290)
T ss_dssp CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH--GGG-SCHHHHHHHHHHHHHHHHH
T ss_pred cceecCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc--CCC-CChhhhHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999 666 55 9999999999999999
Q ss_pred HhhhheeeEecccccCCCCCC
Q 026387 207 ENACLSVHVRGSEYTLLGSSD 227 (239)
Q Consensus 207 E~v~Y~l~vRg~e~~~~~~~~ 227 (239)
|++||+|+|||+|+|.++..|
T Consensus 254 E~v~Ydl~vRg~e~pk~~~~d 274 (290)
T 3qb5_K 254 ENACYALKVRGSEIPKHMLAD 274 (290)
T ss_dssp HHHHHHHHHHTTCCCCCCC--
T ss_pred HHHhhheeeecCCCCcccchh
Confidence 999999999999999766443
No 2
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=100.00 E-value=2.2e-54 Score=393.84 Aligned_cols=180 Identities=32% Similarity=0.530 Sum_probs=164.6
Q ss_pred CccCCcchHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 026387 45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV-------------------------------- 92 (239)
Q Consensus 45 ~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L-------------------------------- 92 (239)
.++++++++.++|++|+++||++||+||+|+|+|||||+.||++||+|
T Consensus 22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~l 101 (298)
T 3axj_B 22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAV 101 (298)
T ss_dssp -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999998
Q ss_pred --------------------HHHHHHHHHHHHhh---c------CCCCCHHHHhhccCCCCC------------------
Q 026387 93 --------------------QEYVEAATFCKFCR---T------GTLLDLEELNAGLLPLSD------------------ 125 (239)
Q Consensus 93 --------------------QEyvEA~sf~~yL~---~------g~Llt~eev~~~l~~l~~------------------ 125 (239)
||||||++|++||+ + |+|+|++|+++.|.....
T Consensus 102 a~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L~~~~~~~~~~~~~~~~~~~~~d~ 181 (298)
T 3axj_B 102 ALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGEDVQAIA 181 (298)
T ss_dssp HHHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHCEEECCCC----------------
T ss_pred HHHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHhccccccccccccccccccccccc
Confidence 99999999999999 8 999999999887643221
Q ss_pred ----CCCCCcccChhhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHH
Q 026387 126 ----PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQ 201 (239)
Q Consensus 126 ----~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~ 201 (239)
+....|+|+++|||+||+||||||||||||+|+.||++.|.+||+||++||++|++| +++.+++||||+|+|||
T Consensus 182 ~~~~~~~~~f~v~~edYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--nlkn~~~LRKK~D~lk~ 259 (298)
T 3axj_B 182 QVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGYISL--NCQRARELWRKITTMKQ 259 (298)
T ss_dssp ----CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTC--CCTTCHHHHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 111268999999999999999999999999999999999999999999999999999 77723899999999999
Q ss_pred HHHHHHhhhheeeEecccccCCCCC
Q 026387 202 SVLKIENACLSVHVRGSEYTLLGSS 226 (239)
Q Consensus 202 slkKvE~v~Y~l~vRg~e~~~~~~~ 226 (239)
+|+|||++||+++|||+|+|.|+++
T Consensus 260 svkKvE~v~Ydl~vRg~e~~~~~~~ 284 (298)
T 3axj_B 260 SVLKAENVCYNVKVRGGEAAKWGAT 284 (298)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHTC--
T ss_pred HHHHHHHHHHHheecCCCccccccc
Confidence 9999999999999999999999864
No 3
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=100.00 E-value=7e-54 Score=381.93 Aligned_cols=174 Identities=26% Similarity=0.383 Sum_probs=159.0
Q ss_pred cchHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q 026387 50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV------------------------------------- 92 (239)
Q Consensus 50 ~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L------------------------------------- 92 (239)
++++.++|+.|+++||++||+||+|+|+||||++.||++||+|
T Consensus 17 ~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~~~~~L~~~l~~ 96 (249)
T 3axj_A 17 NFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQKYQKLAELVPA 96 (249)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678899999999999999999999999999999999999988
Q ss_pred --------------HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhhhc
Q 026387 93 --------------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRIS 158 (239)
Q Consensus 93 --------------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v~ 158 (239)
||||||++|++||++|+|+|++|+++.| +++.+....|+|+++|||+||+||||||||||+|+|+
T Consensus 97 ~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L-~~~~~~~~~f~v~~edYLlGL~DLtGEL~R~ain~v~ 175 (249)
T 3axj_A 97 GQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEML-GLKISQSEGFHLDVEDYLLGILQLASELSRFATNSVT 175 (249)
T ss_dssp TCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH-TCBSSTTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh-ccccCCCcccccCHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 9999999999999999999999998766 4444456689999999999999999999999999999
Q ss_pred CCchHhHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhheeeEecccccCCCCCCc
Q 026387 159 DGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDP 228 (239)
Q Consensus 159 ~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y~l~vRg~e~~~~~~~~~ 228 (239)
.||++.|.+|++||++||++|+.| +++ |++||||+|++||+|+|||++||+++|||+ .|..++++|
T Consensus 176 ~Gd~~~~~~i~~fm~~Ly~~f~~L--n~~-n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~-~~~~~~~~~ 241 (249)
T 3axj_A 176 MGDYERPLNISHFIGDLNTGFRLL--NLK-NDGLRKRFDALKYDVKKIEEVVYDVSIRGL-SSKEKDQQE 241 (249)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHT--CCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCC------
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCC-CccHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCccccCC
Confidence 999999999999999999999999 676 899999999999999999999999999999 788888877
No 4
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=100.00 E-value=1.2e-53 Score=378.47 Aligned_cols=167 Identities=22% Similarity=0.374 Sum_probs=157.4
Q ss_pred cchHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Q 026387 50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQV------------------------------------- 92 (239)
Q Consensus 50 ~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~L------------------------------------- 92 (239)
.+++.++|+.++++||++||+||+|+|+||||++.||++||+|
T Consensus 12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~L~~~l 91 (240)
T 1j1j_A 12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 91 (240)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999999999977
Q ss_pred ----------------HHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhh
Q 026387 93 ----------------QEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGR 156 (239)
Q Consensus 93 ----------------QEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~ 156 (239)
||||||++|++||++|+|+|++|+++.| +++.+....|+|+++|||+||+||||||||||+|+
T Consensus 92 ~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L-~~~~~~~~~f~v~~edYLlGL~DltGEL~R~avn~ 170 (240)
T 1j1j_A 92 PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEIL-GIEPDREKGFHLDVEDYLSGVLILASELSRLSVNS 170 (240)
T ss_dssp CGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH-TCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh-CCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998766 56666677899999999999999999999999999
Q ss_pred hcCCchHhHHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhheeeEecccc
Q 026387 157 ISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEY 220 (239)
Q Consensus 157 v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y~l~vRg~e~ 220 (239)
|+.||++.|.+|++||++||++|++| +++ |++||||+|++||+|+|||++||+++|||++.
T Consensus 171 v~~Gd~~~~~~i~~fm~~Ly~~f~~L--nl~-n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~~ 231 (240)
T 1j1j_A 171 VTAGDYSRPLHISTFINELDSGFRLL--NLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNK 231 (240)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTTC--CCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC--
T ss_pred HhcCChHhHHHHHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 99999999999999999999999999 676 89999999999999999999999999999964
No 5
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=53.36 E-value=8.6 Score=28.85 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=37.9
Q ss_pred HhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCCC
Q 026387 144 DLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMD 187 (239)
Q Consensus 144 DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk 187 (239)
+++.+|++..-..+..|+-+ .+|.+||-+=|..|.++.|+++
T Consensus 40 ~iA~dlR~~Vre~l~~G~Sd--~eI~~~mv~RYGdfVly~Pp~~ 81 (90)
T 2kw0_A 40 MIATDLRQKVYELMQEGKSK--KEIVDYMVARYGNFVTYDPPLT 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHTCCH--HHHHHHHHHHHTTTCBCSCCSC
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeEEeeCCCC
Confidence 78999999999999999875 5899999999999999988874
No 6
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=47.13 E-value=11 Score=27.87 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=36.0
Q ss_pred HhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhhhhcCCC
Q 026387 144 DLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLM 186 (239)
Q Consensus 144 DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~l 186 (239)
+++.+|++..-..+..|+-+ .+|.+||.+=|..|.++.|++
T Consensus 43 ~iA~dlR~~V~~~l~~G~sd--~eI~~~~v~RYG~fVly~Pp~ 83 (84)
T 2hl7_A 43 PIAADLRKQIYGQLQQGKSD--GEIVDYMVARYGDFVRYKPPV 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHTCCH--HHHHHHHHHHHTTTCEECCC-
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeeeeeCCC
Confidence 78999999999999999875 589999999999999987764
No 7
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=42.68 E-value=13 Score=29.70 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 026387 67 LNEKRERVVKSSRDITINSKKVI 89 (239)
Q Consensus 67 ~~d~REriik~SRdIt~~SKk~I 89 (239)
+.=.|||+++-|++-++.||++|
T Consensus 49 ~y~nreRlm~~C~~y~~~Skkii 71 (141)
T 1gak_A 49 KKVNRERMMRYCMDYARYSKKIL 71 (141)
T ss_dssp HHHHHHHHHHBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44569999999999999999999
No 8
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=41.90 E-value=6.6 Score=39.53 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026387 53 MKDAFANYAGYLNEL----NEKRERVVKSSRDITINSKKVIFQV 92 (239)
Q Consensus 53 ~~~~F~~~~~~Ld~~----~d~REriik~SRdIt~~SKk~If~L 92 (239)
+.+.+..+.++|+.. .+..+.+.++.|++...+|++||.=
T Consensus 493 vA~~L~gi~~~Le~~~~~~~~~~~a~~~~~~~~~~~h~~i~F~G 536 (729)
T 3o6x_A 493 MANQLNEFKASVDKLMEEGIGKDEAIFRILKENIIASELIRFEG 536 (729)
T ss_dssp HHHHHHHHHHHTCC--------CCTHHHHHHHHHHHHGGGEECS
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHcCCEEeCC
Confidence 346788899999886 5777889999999999999999986
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.32 E-value=98 Score=24.44 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=40.5
Q ss_pred hhhHHHHHHHhHHHHHHHHhhh--hcCCchHhH--HHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhh
Q 026387 135 VFDYLLGLADLTGELMRLAIGR--ISDGELEFA--EKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENAC 210 (239)
Q Consensus 135 ~~DYLlGL~DLtGELmR~ain~--v~~Gd~~~~--~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~ 210 (239)
.++||..++....+=||-.-.. -..-+.+.. ...+++..+++ .++++.+.++..++..++-.
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~--------------k~~~~~~~L~~~l~~~~kE~ 91 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYF--------------KAKKMADSLSLDIENKDKEI 91 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999887743 333222221 12233333332 23666777777777777777
Q ss_pred heee
Q 026387 211 LSVH 214 (239)
Q Consensus 211 Y~l~ 214 (239)
|+++
T Consensus 92 ~~lK 95 (138)
T 3hnw_A 92 YDLK 95 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 10
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=29.56 E-value=84 Score=20.58 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026387 55 DAFANYAGYLNELNEKRERVVKSSRDITINSKKV 88 (239)
Q Consensus 55 ~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~ 88 (239)
.-|+-|.+++....+-.|.++|+-.++....|+.
T Consensus 8 d~felfkey~k~r~~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 8 DYFELFKEYLKKREENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp CHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4588889999999999999999999988777653
No 11
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=27.33 E-value=2.4e+02 Score=24.14 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHHHHHHhHHHHHHHHhhhhcC--------Cch
Q 026387 91 QVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISD--------GEL 162 (239)
Q Consensus 91 ~LQEyvEA~sf~~yL~~g~Llt~eev~~~l~~l~~~~~~~~~V~~~DYLlGL~DLtGELmR~ain~v~~--------Gd~ 162 (239)
.+++++++.. ..+...+..|.+|+ ++|..+++..+|+|+=-.... .. .++
T Consensus 109 ~~~~li~g~~--~Dl~~~~~~t~~dL-------------------~~Yc~~vAg~VG~l~~~l~g~-~~~~~~~~~A~~l 166 (293)
T 3acx_A 109 SFYNLIDTVY--KDQHFTMFETDAEL-------------------FGYCYGVAGTVGEVLTPILSD-HETHQTYDVARRL 166 (293)
T ss_dssp HHHHHHHHHH--HHTTCCCCSSHHHH-------------------HHHHHHHTHHHHHHHHHHHCS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHcCCCCCCCHHHH-------------------HHHHHHhhHHHHHHHHHHhCC-CCcHHHHHHHHHH
Confidence 3488888764 46766778888886 699999999999987655531 11 113
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 026387 163 EFAEKICRFSRDIYRELT 180 (239)
Q Consensus 163 ~~~~~i~~fm~~Iy~~f~ 180 (239)
-.+.++.+|++++-....
T Consensus 167 G~AlQltNilRDv~eD~~ 184 (293)
T 3acx_A 167 GESLQLINILRDVGEDFE 184 (293)
T ss_dssp HHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456778899999987764
No 12
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=26.53 E-value=1.1e+02 Score=22.84 Aligned_cols=46 Identities=2% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhee
Q 026387 165 AEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSV 213 (239)
Q Consensus 165 ~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y~l 213 (239)
|.++-+..+..-.....+ ... ....+|-+|.++..|.|.|..||..
T Consensus 34 P~~l~qv~q~~v~ai~sl--~~q-DpnV~kDLdn~~acL~k~~~t~~ra 79 (97)
T 3g80_A 34 PAKLEQLAQETQATIQTL--MIA-DPNVNKDLRAFCEFLTVQHQRAYRA 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHTC--CCC-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--ccc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666 233 3578999999999999999999864
No 13
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=25.49 E-value=36 Score=25.05 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=33.9
Q ss_pred hhhhcCCchHhHHHHH----HHHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHH
Q 026387 154 IGRISDGELEFAEKIC----RFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKI 206 (239)
Q Consensus 154 in~v~~Gd~~~~~~i~----~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKv 206 (239)
||.+--||-..++++. +|=..||+.-..=.-. -+.+|+|+++||+.+.+=
T Consensus 26 In~iNGG~~~~~EKlk~~A~~FEaaLyaksSSK~eY---mdsMr~ki~aMr~t~~~~ 79 (85)
T 2k0n_A 26 INTLNGGSSDTADKIRIHAKNFEAALFAKSSSKKEY---MDSMNEKVAVMRNTYNTR 79 (85)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHSCCSHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHHHH
Confidence 6777788877777764 5666677554321102 268999999999987653
No 14
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=24.73 E-value=1e+02 Score=24.63 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHhhhhcCCchHhHHHHHHHHHHHHHHhh
Q 026387 142 LADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELT 180 (239)
Q Consensus 142 L~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~ 180 (239)
|.=..-||=|||+| -|-++.++-+-++|+.|.-.+.
T Consensus 35 lVWAsrELeRFaln---pgLLET~eGC~qIl~qLqPal~ 70 (133)
T 2gol_A 35 IVWASRELERFAVN---PGLLETSEGCRQILGQLQPSLQ 70 (133)
T ss_dssp HHHHHHHHHHTTBC---GGGGGSHHHHHHHHHHHHHHHT
T ss_pred chhhhhHHHHhccC---cchhhhHHHHHHHHHHhccccc
Confidence 45568899999999 4555666655556666554443
No 15
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.25 E-value=1.6e+02 Score=21.19 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhcCCchHhHHHHHH-HHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHH
Q 026387 146 TGELMRLAIGRISDGELEFAEKICR-FSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLK 205 (239)
Q Consensus 146 tGELmR~ain~v~~Gd~~~~~~i~~-fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkK 205 (239)
.+|=...|-+....|||+.+..+.+ .+..|...+..+ + +...|.|=..+++.|..
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~--~---d~~~r~kW~~~~~ei~~ 67 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV--K---DTHLRQKWQQVWQEINV 67 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC--S---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc--C---CHHHHHhHHHHHHHHHH
Confidence 3445556666666799999999875 888888888877 2 45678898888887654
No 16
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=22.88 E-value=1.3e+02 Score=24.18 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=37.9
Q ss_pred hhHHHHHHHhHHHHHHHHhhhhcCCchHhHHHHHH---HHHHHHHHhh
Q 026387 136 FDYLLGLADLTGELMRLAIGRISDGELEFAEKICR---FSRDIYRELT 180 (239)
Q Consensus 136 ~DYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~---fm~~Iy~~f~ 180 (239)
...|..+++.+.+..+.+++++..+|.+.|.+++. -+.++|..+.
T Consensus 116 ~~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~~~ 163 (217)
T 1xwm_A 116 IGPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMM 163 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999988875 5666666554
No 17
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.57 E-value=1.7e+02 Score=21.16 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=38.3
Q ss_pred HHHhHHHHHHHHhhhhcCCchHhHHHHHH-HHHHHHHHhhhhcCCCCCCCcchhhHHHHHHHHHHHHh
Q 026387 142 LADLTGELMRLAIGRISDGELEFAEKICR-FSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIEN 208 (239)
Q Consensus 142 L~DLtGELmR~ain~v~~Gd~~~~~~i~~-fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~ 208 (239)
+.+-+-++.+-||..=..|+++.|..... -++-+-..+. ..++-+....+|.|+..-..-.+++..
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk-~e~~~~~k~~l~~K~~eYl~RAE~LK~ 77 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK-GTKESSKRCVLRTKISGYMDRAENIKK 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999988653 3333333322 222211123456666554444444433
Done!