BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026388
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana
GN=GOS12 PE=1 SV=2
Length = 257
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/257 (83%), Positives = 229/257 (89%), Gaps = 18/257 (7%)
Query: 1 MTDPNLYLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQG---------------- 44
MT+ +L LQESGWEELR+EARKIEGDLDVKLSSYAKLGARFTQG
Sbjct: 1 MTESSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGDTDLVMNYEKVLKCVL 60
Query: 45 --GYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHR 102
GYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDIND+MSRCAASAAPTTSVTQKLARHR
Sbjct: 61 VSGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHR 120
Query: 103 DILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSI 162
DILHE+TQEFRRIKGNINS+REHAELLSSVRDDISEYKASGSMSP +Q+LRERA+IHGSI
Sbjct: 121 DILHEYTQEFRRIKGNINSLREHAELLSSVRDDISEYKASGSMSPGVQVLRERASIHGSI 180
Query: 163 THIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILA 222
+HIDDVI QAQ TR VLGSQR+LF DVQGKVK L DKFP+IRGLLGSI+R+RSRDTLIL+
Sbjct: 181 SHIDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILS 240
Query: 223 AVIAGCTLFLIIYWLSK 239
AVIA CTLFLIIYWLSK
Sbjct: 241 AVIAACTLFLIIYWLSK 257
>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1
SV=2
Length = 250
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 138/239 (57%), Gaps = 16/239 (6%)
Query: 13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTG--------SPTVGSG---RSWK 61
WE+LRK+AR++E +LD+KL S++KL ++ G D G +P + R ++
Sbjct: 9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFE 68
Query: 62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
+M +EI+ LL +L +ND M+ SA P+ ++ L RHRDIL ++T EF + K N
Sbjct: 69 TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128
Query: 119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
++RE L+ SVR DI YK+ SG + R ++ L+E + S I++ IS A T+
Sbjct: 129 FTAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188
Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
+ SQR + + K+ L+++FP + L+ I R+ RD+LIL VI CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247
>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2
SV=1
Length = 250
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 138/239 (57%), Gaps = 16/239 (6%)
Query: 13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGG--------YVDTGSPTVGSG---RSWK 61
WE+LRK+AR++E +LD+KL S++KL ++ Y +P + R ++
Sbjct: 9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFE 68
Query: 62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
+M +EI+ LL +L IND M+ +SA P+ ++ L RHRDIL ++T EF + K N
Sbjct: 69 TMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128
Query: 119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
++RE L+ SVR DI YK+ SG + R ++ L+E + S I++ IS A T+
Sbjct: 129 FVAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188
Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
+ SQR + +Q K+ L+++FP + L+ I R+ RD+LIL VI CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247
>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2
SV=1
Length = 248
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 139/237 (58%), Gaps = 14/237 (5%)
Query: 13 WEELRKEARKIEGDLDVKLSSYAKLGARF----TQGGYVDTGSPTV---GSG--RSWKSM 63
WE+LRK+AR++E +LD+KL S++KL + T+ G D+ T GS R +++M
Sbjct: 9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETM 68
Query: 64 EMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGNIN 120
+EI+ LL +L +ND M+ SA P+ ++ L RHRDIL ++T EF + K N
Sbjct: 69 AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM 128
Query: 121 SMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTRTV 178
S+RE L+ SVR DI YK+ SG + R ++ L+E + S I++ IS A T+
Sbjct: 129 SIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKEN 188
Query: 179 LGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
+ SQR + + K+ L+++FP + L+ I R+ RD+LIL VI CT+ L++Y
Sbjct: 189 MTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 245
>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1
PE=1 SV=1
Length = 250
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 137/239 (57%), Gaps = 16/239 (6%)
Query: 13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTG--------SPTVGSG---RSWK 61
WE+LRK+AR++E +LD+KL S++KL ++ D G +P + R ++
Sbjct: 9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68
Query: 62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
+M +EI+ LL +L +ND M+ SA P+ ++ L RHRDIL ++T EF + K N
Sbjct: 69 TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128
Query: 119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
++RE L+ SVR DI YK+ SG + R ++ L+E + S I++ IS A T+
Sbjct: 129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188
Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
+ SQR + + K+ L+++FP + L+ I R+ RD+LIL VI CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247
>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1
PE=1 SV=1
Length = 250
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 137/239 (57%), Gaps = 16/239 (6%)
Query: 13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTG--------SPTVGSG---RSWK 61
WE+LRK+AR++E +LD+KL S++KL ++ D G +P + R ++
Sbjct: 9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68
Query: 62 SMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIKGN 118
+M +EI+ LL +L +ND M+ SA P+ ++ L RHRDIL ++T EF + K N
Sbjct: 69 TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128
Query: 119 INSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQTTR 176
++RE L+ SVR DI YK+ SG + R ++ L+E + S I++ IS A T+
Sbjct: 129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188
Query: 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
+ SQR + + K+ L+++FP + L+ I R+ RD+LIL VI CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247
>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1
SV=1
Length = 250
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 137/241 (56%), Gaps = 16/241 (6%)
Query: 11 SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGG--------YVDTGSPTVGSG---RS 59
S WE+LRK+AR++E +LD+KL S++KL ++ Y +P + R
Sbjct: 7 SYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRM 66
Query: 60 WKSMEMEIQSLLEKLLDINDAMSRCAASAA-PT--TSVTQKLARHRDILHEFTQEFRRIK 116
+++M +EI+ LL +L +ND M+ SA P+ ++ L RHRDIL ++T EF + K
Sbjct: 67 FETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTK 126
Query: 117 GNINSMREHAELLSSVRDDISEYKA-SGSMSPRMQI-LRERAAIHGSITHIDDVISQAQT 174
N ++RE L+ SVR DI YK+ SG + R ++ L+E + S I++ IS A
Sbjct: 127 ANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMA 186
Query: 175 TRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLII 234
T+ + SQR + + K+ L+++FP + L+ I R+ RD+LIL VI CT+ L++
Sbjct: 187 TKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLL 246
Query: 235 Y 235
Y
Sbjct: 247 Y 247
>sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana
GN=GOS11 PE=2 SV=1
Length = 223
Score = 130 bits (327), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 12/230 (5%)
Query: 11 SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSL 70
S W+ LRK+ARKIE LD ++ SY +L V T + + G +E I L
Sbjct: 5 SSWDALRKQARKIEAQLDEQMHSYRRL---------VSTKALSKSDGNE-SDLEAGIDLL 54
Query: 71 LEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLS 130
L +L +N M + S+ + V+ L RH++IL + TQEF R + ++ + +EHA LL
Sbjct: 55 LRQLQQVNAQM-QAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLE 113
Query: 131 SVRD-DISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDV 189
R+ D + +++E I+ + +D VISQAQ T L QR+ FG +
Sbjct: 114 DFREFDRTRLDLEDGYGSEQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGI 173
Query: 190 QGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239
K+ ++ + P + +L +I+R++S DT+IL+ V A CT + IYW++K
Sbjct: 174 NSKLSNVASRLPTVNTILAAIKRKKSMDTIILSLVAAVCTFLIFIYWITK 223
>sp|Q95ZW1|GOSR1_CAEEL Golgi SNAP receptor complex member 1 OS=Caenorhabditis elegans
GN=gos-28 PE=2 SV=1
Length = 234
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 9/231 (3%)
Query: 13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGR-SWKSMEMEIQSLL 71
WE LRK+AR E +DVKL S KL A + GG+ D TV S + S+K++ EI+ L+
Sbjct: 5 WEALRKKARSTENSIDVKLVSLNKLTAS-SHGGF-DIDEKTVSSRQTSFKTVTTEIEGLI 62
Query: 72 EKLLDINDAMSRCA-----ASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHA 126
E+L +IND M+ A AS A ++ L RHR+IL ++ E+RR + N++ + +
Sbjct: 63 EQLTNINDDMNDVAGAQSSASWANNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQRE 122
Query: 127 ELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALF 186
LLSS ++ + + L+E I+ +D+ + A +T+ + Q
Sbjct: 123 LLLSSSNENRNNPILNNRARGYDMYLKENDHINACDRLLDEQLEMAMSTKENMARQGINL 182
Query: 187 GDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL 237
+ ++ +S K+P I L+ I+ ++ ++TLILAAVI+ C +F I+W+
Sbjct: 183 RGISTRLHHISKKYPAINNLMQKIKTKKQKNTLILAAVISSCLIF-TIFWI 232
>sp|A8XLW0|GOSR1_CAEBR Golgi SNAP receptor complex member 1 OS=Caenorhabditis briggsae
GN=gos-28 PE=3 SV=1
Length = 234
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%)
Query: 13 WEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRS-WKSMEMEIQSLL 71
WE LRK+AR E +DVKL S KL A + GG+ D TV S ++ ++++ EI+ L+
Sbjct: 5 WEALRKKARSTENSIDVKLVSLNKLTAS-SHGGF-DIDEKTVSSRQTTFRTVTTEIEGLI 62
Query: 72 EKLLDINDAMSRCA-----ASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHA 126
E+L +IND M+ A AS A ++ L RHR+IL ++ E+RR + N++ + +
Sbjct: 63 EQLTNINDDMNDVAGAQSSASWASNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQRE 122
Query: 127 ELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALF 186
LLSS ++ + L+E I+ +D+ I A +T+ + Q
Sbjct: 123 LLLSSSNNESRNPAVNNRARGYDMYLKENDHINACDRLLDEQIEMAMSTKENVARQGINL 182
Query: 187 GDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL 237
+ ++ ++ K+P I L+ I+ ++ ++T+ILA VI+ C +F I+W+
Sbjct: 183 RGISNRLHYITKKYPAINNLMQKIKTKKQKNTMILAGVISACLIF-TIFWI 232
>sp|Q9VE50|GOSR1_DROME Golgi SNAP receptor complex member 1 OS=Drosophila melanogaster
GN=Gos28 PE=2 SV=1
Length = 232
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 134/236 (56%), Gaps = 15/236 (6%)
Query: 11 SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGY-----VDTGSPTVGSGRSWKSMEM 65
S ++ LRK+AR +E ++D+KL +++K+GA GG VDT SP +G + S+
Sbjct: 4 SSYDVLRKQARSLENEIDLKLVAFSKIGAGSGGGGSGGLGGVDT-SPLLGE-HVFDSLSE 61
Query: 66 EIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMR-E 124
EI+ +LEKL +N++MS AS A + L RHR+IL + QEF +I N ++MR E
Sbjct: 62 EIEQMLEKLSSLNESMSDLPASGA---AAMHTLQRHREILQGYRQEFNKICAN-HTMRIE 117
Query: 125 HAELL--SSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQ 182
ELL S + SG ++ R L+E ++ + ++D I+ A TR L +Q
Sbjct: 118 REELLRGSGLATSSGSPSISG-LNRREMYLKESGHLNSASHLVNDQINIAIETRDHLHAQ 176
Query: 183 RALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLS 238
R F +Q + +S++FP+I L+ I ++ RD+LIL AVI C + L++Y +
Sbjct: 177 RQAFKRLQTRFNDISNRFPLISSLIQRINIKKRRDSLILGAVIGFCVILLLLYAFN 232
>sp|P38736|GOSR1_YEAST Golgi SNAP receptor complex member 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GOS1 PE=1 SV=1
Length = 223
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Query: 61 KSMEMEIQSLLEKLLDINDAMSR-CAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNI 119
K ++ +++ +L + D+ D++++ C ++ A + S +L RH++IL + + FR I+ +I
Sbjct: 44 KKIDKQLEGILGQRQDVIDSLTQICDSNPAISASKLSQLHRHKEILQDHWKSFRNIRSSI 103
Query: 120 NSMREHAELLSSVRDDISEYKASGSMSP----RMQILRERAAIHGSITHIDDVISQAQTT 175
R LL SV++DI+ + + +P I E I S +D +ISQA T
Sbjct: 104 QQERNRLNLLFSVKNDIAN-STTDAPAPIGDADEYIQNETRRIDQSNNVVDRLISQAWET 162
Query: 176 RTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIY 235
R+ SQ + KV + P + L+ I RR ++ +LA + C LFL
Sbjct: 163 RSQFHSQSNVLNTANNKVLQTLQRIPGVNQLIMKINTRRKKNAFVLATITTLCILFLFFT 222
Query: 236 W 236
W
Sbjct: 223 W 223
>sp|Q09835|GOS1_SCHPO Protein transport protein gos1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=gos1 PE=3 SV=1
Length = 182
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 152 LRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIR 211
++E ++ SI ++++ +A TR Q ++ G+V ++ + P I +L
Sbjct: 98 MQEANSLDNSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKTS 157
Query: 212 RRRSRDTLILAAVIAGCTLFLIIY 235
RR RD++ILA +I+ L + +
Sbjct: 158 IRRRRDSIILALLISVLMLLFLFF 181
>sp|Q45UF8|VP4_ROTJ1 Outer capsid protein VP4 OS=Rotavirus B (isolate Human/China/ADRV-N
J19/1997) PE=3 SV=1
Length = 823
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 21 RKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDA 80
++ E D++V ++ FT GG S T S+ +++ ++ +L ++ +I+D
Sbjct: 504 KEFEYDINVTYTTLLPSDPEFTTGGTNYAQSVTAVLEESFINLQNQVNEMLTRM-NISDL 562
Query: 81 MSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSM 122
S + + TS Q L D+L + F+++KG + S+
Sbjct: 563 TSGVMSVFSVATSFPQILDGISDLLKAASSAFKKVKGKVGSV 604
>sp|O94613|TAH18_SCHPO Probable NADPH reductase TAH18 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tah18 PE=3 SV=2
Length = 584
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 30/74 (40%)
Query: 153 RERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRR 212
+ER S +IDD R + F VQ ++ D FP+IRG SI
Sbjct: 320 KERLQEFSSYKNIDDYYDYTTRPRRTVLETLQEFKSVQIPIEYALDAFPVIRGRQYSIAN 379
Query: 213 RRSRDTLILAAVIA 226
R T IL +A
Sbjct: 380 RCDNSTGILELAVA 393
>sp|A9Q1L0|VP4_ROTB2 Outer capsid protein VP4 OS=Rotavirus (isolate
Human/Bangladesh/ADRV-N B219/2002) PE=1 SV=1
Length = 826
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 21 RKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDA 80
++ E D++V ++ FT GG S T S+ +++ ++ +L ++ +I+D
Sbjct: 507 KEFEYDINVTYTTLLPSDPEFTTGGTNYAQSVTAVLEESFINLQNQVNEMLTRM-NISDL 565
Query: 81 MSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSM 122
S + + TS Q L D+L + F+++KG + ++
Sbjct: 566 TSGVMSVFSVATSFPQILDGISDLLKAASSAFKKVKGKVGNV 607
>sp|B3H0J4|GLGA_ACTP7 Glycogen synthase OS=Actinobacillus pleuropneumoniae serotype 7
(strain AP76) GN=glgA PE=3 SV=1
Length = 478
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 107 EFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHID 166
EF E +K + + + + +I+E A G M +Q + + +HG + +D
Sbjct: 191 EFYGEISYLKAGLYFADKITTVSPTYALEITEEIAGGGMHGLLQTRKAQGRLHGVLNGVD 250
Query: 167 DVISQAQTTRTVLGSQRALFGDVQGKVK 194
D + +T ++ + + + +QGK K
Sbjct: 251 DTVWNPETDTNIVATYKPSY--MQGKSK 276
>sp|A3MZ67|GLGA_ACTP2 Glycogen synthase OS=Actinobacillus pleuropneumoniae serotype 5b
(strain L20) GN=glgA PE=3 SV=1
Length = 478
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 107 EFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHID 166
EF E +K + + + + +I+E A G M +Q + + +HG + +D
Sbjct: 191 EFYGEISYLKAGLYFADKITTVSPTYALEITEEIAGGGMHGLLQTRKAQGRLHGVLNGVD 250
Query: 167 DVISQAQTTRTVLGSQRALFGDVQGKVK 194
D + +T ++ + + + +QGK K
Sbjct: 251 DTVWNPETDTNIVATYKPSY--MQGKSK 276
>sp|Q1GEU9|ATPE_RUEST ATP synthase epsilon chain OS=Ruegeria sp. (strain TM1040) GN=atpC
PE=3 SV=1
Length = 137
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 116 KGNINSMREHAELLSSVRDDI---------SEYKASGSMS----PRMQILRERAAIHGSI 162
+G++ +M HA L+++R I +EY +G + + +L ERA +
Sbjct: 30 EGDMTAMPLHAPTLTTLRPGILKVDAPEGTTEYLVTGGFAQITAEGLSVLAERAIPMDEM 89
Query: 163 T--HIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSD 198
T H+D++I +A+T + G V+ K+L+D
Sbjct: 90 TRAHLDELIEEARTMYKTAQEDNSEHGLVEDAAKMLAD 127
>sp|A3CWU4|RADA_METMJ DNA repair and recombination protein RadA OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=radA
PE=3 SV=1
Length = 324
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 137 SEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGD 188
SEY G+++PR Q L +H + IDD + T V+ + LFGD
Sbjct: 220 SEYAGRGTLAPRQQKLNRH--MHDLLKLIDDHNAVGLVTNQVMSNPGILFGD 269
>sp|O13851|DLP1_SCHPO Decaprenyl-diphosphate synthase subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dlp1 PE=1 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 101 HRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISE-YKASGS--MSPRMQILRERAA 157
H D+L T+E + G IN+ ++ LL D+I++ Y+ S + P + +L RA+
Sbjct: 45 HSDLLKMLTEEMDSLNGQINTWTDNNPLL----DEITKPYRKSSTRFFHPLLVLLMSRAS 100
Query: 158 IHG 160
++G
Sbjct: 101 VNG 103
>sp|P41941|GOSR2_CAEEL Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis
elegans GN=gosr-2.1 PE=3 SV=1
Length = 213
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%)
Query: 158 IHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRD 217
+ S TH+DD+ISQ L SQ V K+ + + L I RR D
Sbjct: 130 LQSSHTHLDDLISQGSAVLENLKSQHLNLRGVGRKMHEIGQALGLSNSTLQVIDRRVRED 189
Query: 218 TLILAAVIAGCTLFLIIYW 236
++ C +F+ ++
Sbjct: 190 WILFVIGCIVCCIFMYAFY 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,518,329
Number of Sequences: 539616
Number of extensions: 3125775
Number of successful extensions: 10511
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 10449
Number of HSP's gapped (non-prelim): 62
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)