Query 026388
Match_columns 239
No_of_seqs 172 out of 502
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3208 SNARE protein GS28 [In 100.0 1.2E-61 2.6E-66 405.8 16.4 228 10-238 4-231 (231)
2 KOG1666 V-SNARE [Intracellular 99.9 3.8E-26 8.2E-31 191.4 13.1 207 11-239 3-218 (220)
3 KOG3251 Golgi SNAP receptor co 99.9 2E-25 4.3E-30 187.8 12.2 198 14-237 2-211 (213)
4 PF12352 V-SNARE_C: Snare regi 99.5 7E-15 1.5E-19 103.5 2.2 66 149-214 1-66 (66)
5 PF03908 Sec20: Sec20; InterP 98.6 6E-08 1.3E-12 72.6 4.4 72 155-226 7-78 (92)
6 PF05008 V-SNARE: Vesicle tran 97.7 7.7E-05 1.7E-09 53.9 5.1 55 59-113 22-78 (79)
7 KOG0812 SNARE protein SED5/Syn 97.3 0.0046 1E-07 55.0 12.0 217 11-237 38-308 (311)
8 KOG3202 SNARE protein TLG1/Syn 96.9 0.016 3.5E-07 50.5 11.3 195 10-217 5-213 (235)
9 KOG0809 SNARE protein TLG2/Syn 96.2 0.054 1.2E-06 48.4 10.4 220 10-237 56-300 (305)
10 KOG0860 Synaptobrevin/VAMP-lik 94.8 0.059 1.3E-06 41.9 4.7 85 155-239 28-116 (116)
11 PF00957 Synaptobrevin: Synapt 93.1 0.11 2.5E-06 38.0 3.4 79 157-235 4-86 (89)
12 PF04210 MtrG: Tetrahydrometha 91.6 0.21 4.7E-06 35.2 3.0 53 186-238 14-67 (70)
13 KOG3385 V-SNARE [Intracellular 89.9 0.51 1.1E-05 36.6 4.0 82 153-237 32-117 (118)
14 COG4064 MtrG Tetrahydromethano 86.5 0.83 1.8E-05 32.2 3.0 47 186-232 17-65 (75)
15 TIGR01149 mtrG N5-methyltetrah 85.7 1.1 2.4E-05 31.6 3.2 49 186-234 14-63 (70)
16 PF09753 Use1: Membrane fusion 85.4 1.8 3.9E-05 37.9 5.4 87 148-237 154-247 (251)
17 PRK01026 tetrahydromethanopter 84.8 1.2 2.7E-05 32.0 3.3 48 186-233 17-65 (77)
18 PF01544 CorA: CorA-like Mg2+ 83.2 7.7 0.00017 33.7 8.4 16 224-239 277-292 (292)
19 PRK09546 zntB zinc transporter 82.7 31 0.00067 31.1 12.4 18 104-121 183-200 (324)
20 KOG3894 SNARE protein Syntaxin 76.2 8.8 0.00019 34.9 6.4 77 149-225 214-302 (316)
21 PF07798 DUF1640: Protein of u 73.1 35 0.00076 28.2 9.0 58 174-236 117-174 (177)
22 PF06008 Laminin_I: Laminin Do 71.3 24 0.00053 30.9 8.1 148 60-207 89-243 (264)
23 PF08113 CoxIIa: Cytochrome c 70.7 5.1 0.00011 24.2 2.4 14 224-237 11-24 (34)
24 PF08693 SKG6: Transmembrane a 68.7 2.8 6E-05 26.5 1.1 15 223-237 22-36 (40)
25 KOG0810 SNARE protein Syntaxin 68.7 40 0.00087 30.6 8.9 31 180-210 230-261 (297)
26 PF06008 Laminin_I: Laminin Do 68.2 44 0.00096 29.3 9.1 25 96-120 185-209 (264)
27 PF09177 Syntaxin-6_N: Syntaxi 67.5 15 0.00032 27.3 5.1 58 59-116 36-97 (97)
28 PF00957 Synaptobrevin: Synapt 67.4 11 0.00024 27.3 4.3 74 164-237 4-84 (89)
29 KOG2678 Predicted membrane pro 67.2 13 0.00028 32.3 5.2 86 148-235 142-234 (244)
30 PF01034 Syndecan: Syndecan do 66.0 2 4.4E-05 29.9 0.1 16 224-239 23-38 (64)
31 PF09889 DUF2116: Uncharacteri 65.9 10 0.00022 26.0 3.5 28 204-231 25-52 (59)
32 PF12669 P12: Virus attachment 65.7 4.2 9.2E-05 27.7 1.6 15 219-233 2-16 (58)
33 PF05478 Prominin: Prominin; 64.7 71 0.0015 32.9 10.9 36 5-40 174-210 (806)
34 PF01102 Glycophorin_A: Glycop 61.8 9.3 0.0002 30.1 3.1 6 219-224 69-74 (122)
35 TIGR00383 corA magnesium Mg(2+ 61.3 84 0.0018 28.0 9.7 13 105-117 177-189 (318)
36 PF10779 XhlA: Haemolysin XhlA 61.0 14 0.0003 26.0 3.6 21 217-237 50-70 (71)
37 PF06024 DUF912: Nucleopolyhed 60.1 8.3 0.00018 29.1 2.5 14 219-232 64-77 (101)
38 PF06692 MNSV_P7B: Melon necro 60.0 11 0.00024 25.5 2.7 23 216-238 11-33 (61)
39 KOG2129 Uncharacterized conser 57.5 66 0.0014 30.7 8.3 117 7-131 175-313 (552)
40 KOG1666 V-SNARE [Intracellular 56.5 1E+02 0.0022 26.6 8.7 58 176-237 162-219 (220)
41 PTZ00234 variable surface prot 56.0 8.7 0.00019 36.6 2.4 35 203-238 352-386 (433)
42 PF05084 GRA6: Granule antigen 55.5 10 0.00022 31.4 2.4 27 211-237 145-171 (215)
43 PF13870 DUF4201: Domain of un 55.2 72 0.0016 26.1 7.6 60 59-121 43-102 (177)
44 COG5074 t-SNARE complex subuni 55.1 50 0.0011 29.1 6.7 61 175-236 204-268 (280)
45 COG4640 Predicted membrane pro 54.4 9.7 0.00021 35.8 2.4 21 219-239 53-73 (465)
46 smart00397 t_SNARE Helical reg 54.0 13 0.00027 24.6 2.4 55 151-205 7-61 (66)
47 PF15056 NRN1: Neuritin protei 52.1 10 0.00022 28.1 1.7 21 6-26 54-74 (89)
48 PRK09738 small toxic polypepti 51.5 15 0.00033 24.5 2.3 19 219-237 7-25 (52)
49 PF12911 OppC_N: N-terminal TM 51.5 15 0.00032 24.1 2.4 25 207-231 5-29 (56)
50 PF06024 DUF912: Nucleopolyhed 50.8 10 0.00022 28.7 1.6 17 220-236 68-84 (101)
51 PRK09759 small toxic polypepti 50.7 16 0.00035 24.2 2.4 21 217-237 3-23 (50)
52 PHA02844 putative transmembran 49.9 21 0.00046 25.6 3.0 18 219-236 51-68 (75)
53 PF12575 DUF3753: Protein of u 48.5 23 0.00049 25.3 3.0 17 219-235 51-67 (72)
54 PF06040 Adeno_E3: Adenovirus 48.3 14 0.00031 28.7 2.0 16 218-233 89-104 (127)
55 PF05545 FixQ: Cbb3-type cytoc 47.8 28 0.00062 22.4 3.2 12 227-238 20-31 (49)
56 TIGR01005 eps_transp_fam exopo 47.3 2.9E+02 0.0062 28.0 11.9 27 156-182 379-405 (754)
57 PF11395 DUF2873: Protein of u 47.3 26 0.00057 21.8 2.7 12 227-238 20-31 (43)
58 COG4068 Uncharacterized protei 47.0 18 0.00039 24.8 2.1 24 204-227 30-53 (64)
59 TIGR02115 potass_kdpF K+-trans 46.5 26 0.00057 20.0 2.4 18 220-237 1-18 (26)
60 PRK06287 cobalt transport prot 46.4 17 0.00037 27.8 2.3 19 219-237 79-97 (107)
61 PHA03164 hypothetical protein; 45.3 28 0.00061 25.1 3.0 18 208-225 49-67 (88)
62 PF08172 CASP_C: CASP C termin 44.3 20 0.00044 31.6 2.7 29 93-121 83-111 (248)
63 PHA02650 hypothetical protein; 44.3 27 0.00059 25.3 2.9 16 219-234 52-67 (81)
64 PF07926 TPR_MLP1_2: TPR/MLP1/ 43.7 1.2E+02 0.0026 23.7 6.9 28 160-187 98-125 (132)
65 PF13190 PDGLE: PDGLE domain 43.5 25 0.00055 25.8 2.8 21 219-239 67-87 (88)
66 PHA03054 IMV membrane protein; 42.7 32 0.0007 24.4 3.0 18 219-236 51-68 (72)
67 PF05008 V-SNARE: Vesicle tran 42.6 40 0.00088 23.6 3.7 56 65-120 21-78 (79)
68 TIGR01195 oadG_fam sodium pump 42.3 29 0.00063 25.2 2.9 19 219-237 11-29 (82)
69 PRK14759 potassium-transportin 41.9 45 0.00098 19.5 3.0 19 219-237 5-23 (29)
70 PHA02819 hypothetical protein; 41.8 33 0.00072 24.3 2.9 18 219-236 49-66 (71)
71 PF13800 Sigma_reg_N: Sigma fa 41.2 22 0.00047 26.2 2.1 9 206-214 4-12 (96)
72 PF10960 DUF2762: Protein of u 40.9 16 0.00034 26.0 1.2 17 222-238 12-28 (71)
73 PF09604 Potass_KdpF: F subuni 40.7 44 0.00094 18.9 2.8 18 220-237 2-19 (25)
74 PHA02975 hypothetical protein; 40.5 35 0.00077 24.0 2.9 18 219-236 47-64 (69)
75 COG5325 t-SNARE complex subuni 40.3 45 0.00098 29.9 4.2 61 177-237 216-277 (283)
76 KOG0994 Extracellular matrix g 40.0 53 0.0011 35.3 5.2 39 180-218 1601-1639(1758)
77 PF04277 OAD_gamma: Oxaloaceta 39.7 34 0.00073 24.1 2.9 16 220-235 9-24 (79)
78 PHA02692 hypothetical protein; 39.6 38 0.00083 24.0 3.0 18 219-236 48-66 (70)
79 PRK14750 kdpF potassium-transp 39.3 56 0.0012 19.1 3.1 19 219-237 5-23 (29)
80 PHA02955 hypothetical protein; 39.3 27 0.00058 30.1 2.6 20 219-238 182-201 (213)
81 cd07597 BAR_SNX8 The Bin/Amphi 38.3 2.7E+02 0.0058 24.2 9.2 69 59-129 85-157 (246)
82 PF06422 PDR_CDR: CDR ABC tran 37.9 33 0.00071 25.9 2.7 14 222-235 53-66 (103)
83 PF13800 Sigma_reg_N: Sigma fa 37.7 29 0.00063 25.6 2.3 21 209-229 3-23 (96)
84 TIGR00606 rad50 rad50. This fa 37.3 3.9E+02 0.0084 29.2 11.5 19 12-30 823-841 (1311)
85 PF06013 WXG100: Proteins of 1 37.2 1.3E+02 0.0028 20.3 7.0 27 60-86 16-42 (86)
86 PF05739 SNARE: SNARE domain; 36.9 18 0.00039 24.1 1.0 56 157-212 5-60 (63)
87 KOG4782 Predicted membrane pro 36.9 24 0.00052 26.5 1.7 20 218-237 59-78 (108)
88 cd07643 I-BAR_IMD_MIM Inverse 36.5 48 0.001 28.9 3.8 28 10-37 21-48 (231)
89 PF11190 DUF2976: Protein of u 36.4 34 0.00074 25.3 2.4 22 218-239 62-83 (87)
90 PF02439 Adeno_E3_CR2: Adenovi 35.4 61 0.0013 20.2 3.1 12 219-230 8-19 (38)
91 PF13949 ALIX_LYPXL_bnd: ALIX 35.3 2.7E+02 0.0059 24.3 8.6 73 61-133 42-121 (296)
92 KOG3065 SNAP-25 (synaptosome-a 35.0 28 0.0006 31.2 2.1 55 157-211 80-134 (273)
93 COG4736 CcoQ Cbb3-type cytochr 34.8 51 0.0011 22.7 3.0 15 224-238 17-31 (60)
94 PF03904 DUF334: Domain of unk 34.7 3.1E+02 0.0068 23.9 9.3 53 171-236 114-166 (230)
95 PF09574 DUF2374: Protein of 34.7 58 0.0013 20.6 2.9 21 217-237 18-38 (42)
96 COG4459 NapE Periplasmic nitra 34.3 52 0.0011 22.5 2.8 20 214-233 16-35 (62)
97 TIGR02876 spore_yqfD sporulati 34.1 38 0.00082 31.7 3.0 26 177-202 50-76 (382)
98 TIGR01294 P_lamban phospholamb 33.4 47 0.001 21.5 2.4 19 217-235 30-48 (52)
99 PF09813 Coiled-coil_56: Coile 33.3 43 0.00092 25.4 2.6 23 215-237 48-70 (100)
100 PF15188 CCDC-167: Coiled-coil 32.9 39 0.00084 24.9 2.3 18 98-115 7-24 (85)
101 COG0690 SecE Preprotein transl 31.6 81 0.0018 22.3 3.7 42 195-236 19-61 (73)
102 PF04226 Transgly_assoc: Trans 31.5 67 0.0014 20.8 3.0 19 221-239 30-48 (48)
103 PF08776 VASP_tetra: VASP tetr 29.8 84 0.0018 19.8 3.0 22 101-122 9-30 (40)
104 PF01102 Glycophorin_A: Glycop 29.8 57 0.0012 25.6 2.9 11 219-229 72-82 (122)
105 PF01848 HOK_GEF: Hok/gef fami 29.3 39 0.00084 21.6 1.5 17 221-237 4-20 (43)
106 PF08173 YbgT_YccB: Membrane b 29.2 99 0.0021 18.0 3.1 20 218-237 5-24 (28)
107 PHA03010 hypothetical protein; 29.0 58 0.0013 30.6 3.2 24 214-238 503-526 (546)
108 PHA02902 putative IMV membrane 29.0 67 0.0015 22.4 2.8 14 222-235 11-24 (70)
109 TIGR03017 EpsF chain length de 28.8 4.8E+02 0.01 24.2 11.5 24 12-35 216-239 (444)
110 PRK14748 kdpF potassium-transp 28.8 99 0.0021 18.0 3.0 18 219-236 5-22 (29)
111 PRK10884 SH3 domain-containing 28.6 1E+02 0.0022 26.3 4.5 20 97-116 94-113 (206)
112 PF04272 Phospholamban: Phosph 28.3 63 0.0014 21.0 2.3 17 219-235 32-48 (52)
113 PRK10299 PhoPQ regulatory prot 27.9 83 0.0018 20.5 2.9 14 219-232 7-20 (47)
114 COG3763 Uncharacterized protei 27.7 75 0.0016 22.6 2.9 18 220-237 7-24 (71)
115 COG0497 RecN ATPase involved i 27.6 2.4E+02 0.0053 27.9 7.3 69 106-177 167-235 (557)
116 PF03789 ELK: ELK domain ; In 27.5 92 0.002 17.0 2.6 17 96-112 5-21 (22)
117 PF10168 Nup88: Nuclear pore c 27.4 3E+02 0.0065 28.1 8.2 61 14-86 561-621 (717)
118 KOG0862 Synaptobrevin/VAMP-lik 27.0 1.6E+02 0.0034 25.6 5.3 12 104-115 87-98 (216)
119 PF12495 Vip3A_N: Vegetative i 27.0 1.2E+02 0.0025 24.2 4.1 71 152-226 48-129 (177)
120 PF12761 End3: Actin cytoskele 26.9 3.4E+02 0.0074 23.1 7.3 46 65-110 99-145 (195)
121 PF06459 RR_TM4-6: Ryanodine R 26.6 60 0.0013 29.1 2.8 19 217-235 172-190 (274)
122 PRK14749 hypothetical protein; 26.3 1.2E+02 0.0026 17.8 3.1 19 218-236 5-23 (30)
123 PF12761 End3: Actin cytoskele 26.1 2.9E+02 0.0063 23.5 6.7 96 2-119 86-183 (195)
124 PF06143 Baculo_11_kDa: Baculo 25.9 85 0.0018 23.1 3.0 7 201-207 20-26 (84)
125 PRK03814 oxaloacetate decarbox 25.6 79 0.0017 23.2 2.8 16 220-235 16-31 (85)
126 PRK11637 AmiB activator; Provi 25.3 3.3E+02 0.0071 25.6 7.7 24 14-37 43-66 (428)
127 PF02932 Neur_chan_memb: Neuro 25.2 74 0.0016 25.0 2.9 20 217-236 218-237 (237)
128 TIGR02808 short_TIGR02808 cons 25.2 94 0.002 19.6 2.7 20 216-235 17-36 (42)
129 TIGR02106 cyd_oper_ybgT cyd op 25.0 1.3E+02 0.0028 17.8 3.1 20 218-237 5-24 (30)
130 PRK11085 magnesium/nickel/coba 25.0 5.3E+02 0.011 23.4 10.6 20 218-237 291-310 (316)
131 PRK10856 cytoskeletal protein 24.7 61 0.0013 29.7 2.6 11 210-220 103-113 (331)
132 PF05399 EVI2A: Ectropic viral 24.7 64 0.0014 27.9 2.5 11 222-232 138-148 (227)
133 PF04065 Not3: Not1 N-terminal 24.5 1.2E+02 0.0025 26.6 4.2 27 61-87 4-30 (233)
134 PRK02919 oxaloacetate decarbox 24.2 87 0.0019 22.8 2.8 17 220-236 15-31 (82)
135 PTZ00382 Variant-specific surf 24.1 39 0.00084 25.3 1.0 9 228-236 82-90 (96)
136 PF04880 NUDE_C: NUDE protein, 23.8 58 0.0013 27.0 2.1 23 96-119 31-53 (166)
137 KOG2150 CCR4-NOT transcription 23.5 1.9E+02 0.0042 28.6 5.8 53 60-117 3-56 (575)
138 KOG0250 DNA repair protein RAD 23.1 4.9E+02 0.011 27.9 8.8 35 97-131 345-379 (1074)
139 cd09234 V_HD-PTP_like Protein- 23.1 5.7E+02 0.012 23.2 9.7 70 62-131 86-166 (337)
140 COG3630 OadG Na+-transporting 22.7 1.1E+02 0.0023 22.5 3.0 17 220-236 15-31 (84)
141 PF02038 ATP1G1_PLM_MAT8: ATP1 22.0 1.3E+02 0.0028 20.0 3.0 6 222-227 18-23 (50)
142 PF11174 DUF2970: Protein of u 21.9 1.2E+02 0.0026 20.4 3.0 16 219-234 33-48 (56)
143 PF08114 PMP1_2: ATPase proteo 21.7 1.2E+02 0.0026 19.3 2.7 16 220-235 15-30 (43)
144 PF05644 Miff: Mitochondrial a 21.7 77 0.0017 27.9 2.5 27 211-238 219-245 (246)
145 KOG0412 Golgi transport comple 21.5 4.8E+02 0.01 26.8 8.1 69 61-129 34-103 (773)
146 PF08317 Spc7: Spc7 kinetochor 21.4 6.1E+02 0.013 22.9 9.3 33 59-91 72-104 (325)
147 PF03993 DUF349: Domain of Unk 21.1 2.8E+02 0.0061 18.9 5.3 29 60-88 22-50 (77)
148 PF07225 NDUF_B4: NADH-ubiquin 20.8 1.1E+02 0.0023 24.3 2.9 19 219-237 83-101 (125)
149 PF04102 SlyX: SlyX; InterPro 20.6 3E+02 0.0065 19.0 5.6 46 63-121 5-50 (69)
150 COG3264 Small-conductance mech 20.5 6.1E+02 0.013 26.5 8.8 44 150-193 140-191 (835)
151 PF12606 RELT: Tumour necrosis 20.3 1.3E+02 0.0029 19.8 2.8 6 233-238 19-24 (50)
152 COG4420 Predicted membrane pro 20.1 78 0.0017 26.8 2.1 46 175-237 29-74 (191)
153 COG3197 FixS Uncharacterized p 20.0 1.5E+02 0.0032 20.3 3.0 15 222-236 10-24 (58)
No 1
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-61 Score=405.78 Aligned_cols=228 Identities=50% Similarity=0.814 Sum_probs=213.4
Q ss_pred hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388 10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA 89 (239)
Q Consensus 10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~ 89 (239)
+++||.||||||+||+++|.||++|+++++. +.++|+++++|..+++..|+.++.|||.+|+++++++|+|...+.+..
T Consensus 4 ~s~we~LRkqArslE~~ld~kL~syskl~as-~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s~a 82 (231)
T KOG3208|consen 4 SSSWEALRKQARSLENQLDSKLVSYSKLGAS-THGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASSPA 82 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 4689999999999999999999999999987 566777888888888889999999999999999999999999544444
Q ss_pred CchhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhhhhhccCCCChhhHHHHHhhhhccCchhHHHHH
Q 026388 90 PTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVI 169 (239)
Q Consensus 90 ~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~~~~d~~~~~~~~~~~~~~~ll~E~~~L~~S~~~ld~~l 169 (239)
++++.+|+|+||||||+||++||+|+++++.+.++|++||++++.|++.|+..++....+++++|+++|++|.+.+|++|
T Consensus 83 ~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~e~~lkE~~~in~s~~~vde~I 162 (231)
T KOG3208|consen 83 NSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRGEMYLKEHDHINNSIRLVDELI 162 (231)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchHHHHHHHhccccchHHHHHHHH
Confidence 67899999999999999999999999999999999999999999998888776666667899999999999999999999
Q ss_pred hhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHhc
Q 026388 170 SQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 170 ~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~s 238 (239)
+||++|+++|+.||.+|++++.|+++++++||.||++|++|++||+||++|||+||++|++|+|||||.
T Consensus 163 s~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~~ 231 (231)
T KOG3208|consen 163 SQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWIN 231 (231)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 2
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.8e-26 Score=191.38 Aligned_cols=207 Identities=21% Similarity=0.262 Sum_probs=168.5
Q ss_pred hcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccCC
Q 026388 11 SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAP 90 (239)
Q Consensus 11 ~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~ 90 (239)
.-|+..-+|.+-|-.+|..|++...++. .++.+.+..+|+..+++++++++||+.+|+..||
T Consensus 3 ~~fe~yEqqy~~l~a~it~k~~~~~~~~------------------~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~ 64 (220)
T KOG1666|consen 3 SLFEGYEQQYRELSAEITKKIGRALSLP------------------GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPP 64 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHhcCC------------------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 3466677777777777766665544331 2267889999999999999999999999999887
Q ss_pred c--hhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhhhhhccCCCChhhHHHHHhhhh-------ccC
Q 026388 91 T--TSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAI-------HGS 161 (239)
Q Consensus 91 s--~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~~~~d~~~~~~~~~~~~~~~ll~E~~~L-------~~S 161 (239)
+ +++..+++-|+..|.+++.|++++.+.--...+|+++++....|.. +...+++++||+.+++| ..|
T Consensus 65 ~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add~----~~~~dQR~rLl~nTerLeRst~rl~ds 140 (220)
T KOG1666|consen 65 NFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADDQ----NISADQRARLLQNTERLERSTDRLKDS 140 (220)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhcccc----ccchhHHHHHHhhhHHHHHhHHHHHHH
Confidence 6 4666789999999999999999998544446789999887554322 11245667777655555 556
Q ss_pred chhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHhcC
Q 026388 162 ITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLSK 239 (239)
Q Consensus 162 ~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~sK 239 (239)
+|.+.++.++|.+++++|+.||++|.+++.++++++..++.+++++.-|.||..+++|++++||++.++++++..|+|
T Consensus 141 ~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k 218 (220)
T KOG1666|consen 141 QRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688889999999999999999999999999999999999999999999999999999999999999988887777765
No 3
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-25 Score=187.81 Aligned_cols=198 Identities=19% Similarity=0.271 Sum_probs=151.0
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccCCchh
Q 026388 14 EELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTS 93 (239)
Q Consensus 14 ~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s 93 (239)
+.|.+++...=.++...|..+++... + .+...++.+|+..+.++...|+.|+..+.+.||+.
T Consensus 2 ~~ly~~t~~~~~k~q~~l~rlE~~~~---------~--------~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~- 63 (213)
T KOG3251|consen 2 DALYQSTNRQLDKLQRGLIRLERTIK---------T--------QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKS- 63 (213)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcccc---------c--------cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCc-
Confidence 34566666666666666677776521 0 24477999999999999999999999999988764
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcc-----------hhhHHHHHHHHHhhhhhhhhhhccCCCChhhHHHHHhhhhccCc
Q 026388 94 VTQKLARHRDILHEFTQEFRRIKGN-----------INSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSI 162 (239)
Q Consensus 94 ~~~~l~R~re~L~d~~~ef~r~~~~-----------i~~~~eR~~LL~~~~~d~~~~~~~~~~~~~~~ll~E~~~L~~S~ 162 (239)
.+-.|.+ .++++.+|..++.. .+++++|++||.+.... .......+.|.++++++.+.+||
T Consensus 64 --rq~~rlr--~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~----~~~~~~~~~D~el~~~d~l~~s~ 135 (213)
T KOG3251|consen 64 --RQAARLR--VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTN----GATGTSIPFDEELQENDSLKRSH 135 (213)
T ss_pred --HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCC----CCccCCCcchHHHHhhhHHHHHH
Confidence 2223333 44444444444433 34466788888763211 01122335799999999999999
Q ss_pred hhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHH-HHHHHHHHHHHHHHHh
Q 026388 163 THIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLIL-AAVIAGCTLFLIIYWL 237 (239)
Q Consensus 163 ~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl-~~vI~~ci~~~l~y~~ 237 (239)
+++|++|.+|.+++++|..||-+|+++++||+++++++|.+|++|+.|++|-+.|++|+ ||||.|||+|+++|.|
T Consensus 136 ~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w 211 (213)
T KOG3251|consen 136 NMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRW 211 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988 8888888887655544
No 4
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.50 E-value=7e-15 Score=103.48 Aligned_cols=66 Identities=27% Similarity=0.349 Sum_probs=63.9
Q ss_pred hHHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhcc
Q 026388 149 MQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRR 214 (239)
Q Consensus 149 ~~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~ 214 (239)
|+|++|+++|++|++++++++++|.+|+.+|..||++|+++++|+.++.+++|.++++|+.|.+|+
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 589999999999999999999999999999999999999999999999999999999999999985
No 5
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=98.59 E-value=6e-08 Score=72.64 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=66.8
Q ss_pred hhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHH
Q 026388 155 RAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIA 226 (239)
Q Consensus 155 ~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~ 226 (239)
.+.|.++++++.+.++++..+.+.|..|.++|+.+++...++...+..+.+++..|+++...|++|+.+.++
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~ 78 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFL 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999998854433
No 6
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=97.70 E-value=7.7e-05 Score=53.87 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=39.4
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhccCCc--hhHHHHHHhhhhhHHHHHHHHH
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPT--TSVTQKLARHRDILHEFTQEFR 113 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s--~s~~~~l~R~re~L~d~~~ef~ 113 (239)
+.+....+|+..|+++.+++++|+.++.+.|++ ..+...+..||..|..++++|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 679999999999999999999999999977533 1333345555555555555443
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0046 Score=54.95 Aligned_cols=217 Identities=15% Similarity=0.213 Sum_probs=119.1
Q ss_pred hcHHHHHHHHhhhccccc---ccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhc
Q 026388 11 SGWEELRKEARKIEGDLD---VKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAAS 87 (239)
Q Consensus 11 ~~w~~lr~~ar~LE~~id---~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~ 87 (239)
..-.+.-+.|.+.=.+|- .||..+..||-.-. ..+. -++ +...+.--|..-+.-+..-+-++..+...
T Consensus 38 ~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks---~f~D--r~V----eI~eLT~iikqdi~sln~~i~~Lqei~~~ 108 (311)
T KOG0812|consen 38 SQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKS---LFDD--RPV----EIQELTFIIKQDITSLNSQIAQLQEIVKA 108 (311)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccC--cch----hhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 334455666666665554 45555555543210 0000 011 33444455555555666666666555432
Q ss_pred cCCchhHHHHHHhhhhhHHHHHHHHHHhhcc-----------hhhHHHHHHHHHhhhhhhhhhhcc--------------
Q 026388 88 AAPTTSVTQKLARHRDILHEFTQEFRRIKGN-----------INSMREHAELLSSVRDDISEYKAS-------------- 142 (239)
Q Consensus 88 ~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~-----------i~~~~eR~~LL~~~~~d~~~~~~~-------------- 142 (239)
.+ +.+-.+...+++++..++..-...+... .++.++|.+.|.......+....+
T Consensus 109 ~g-n~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~ 187 (311)
T KOG0812|consen 109 NG-NLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVD 187 (311)
T ss_pred hc-cccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcC
Confidence 22 1111233555555555555444443333 344677888886532211110000
Q ss_pred ----------------CCCC--hhhHHHHHhhh--------hccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhc
Q 026388 143 ----------------GSMS--PRMQILRERAA--------IHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVL 196 (239)
Q Consensus 143 ----------------~~~~--~~~~ll~E~~~--------L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~ 196 (239)
+... +...++.|.+- +++-...+-++=++=.+.-.-...|.++++++..-+.++
T Consensus 188 ~~~~~sq~~~~ln~gd~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds 267 (311)
T KOG0812|consen 188 PKDEASQDVESLNMGDSSNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDS 267 (311)
T ss_pred chhhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 0011 22355555511 122222233333333444455678999999999999999
Q ss_pred ccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 026388 197 SDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 197 ~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~ 237 (239)
+-.+.+..+.|-+-=.|-..++|.+.=|++++|+|+++||+
T Consensus 268 ~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 268 DLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred hhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888788888999988787888877766654
No 8
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.016 Score=50.52 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=118.3
Q ss_pred hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388 10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA 89 (239)
Q Consensus 10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~ 89 (239)
..+|-..+.++.++.+++...+..|+.++.. .+++.+. .-..+...|+..++.+++++.=+..-.....
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~--------~~~~~~~---~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ 73 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKD--------TGSDAEE---LTSVLRRSIEEDLEDLDELISILERNPSKFG 73 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccchhHH---HHHHHHHHhHHHHHHHHHHHHHHHhCccccc
Confidence 4579999999999999999999999998732 0111110 1122335777777777777765554332221
Q ss_pred -Cch---hHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhh--hhhhccCCCC-------hhhHHHHHh-
Q 026388 90 -PTT---SVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVRDDI--SEYKASGSMS-------PRMQILRER- 155 (239)
Q Consensus 90 -~s~---s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~~~~d~--~~~~~~~~~~-------~~~~ll~E~- 155 (239)
+.. ...+.+.+-+..+.+.+..|.. ..+.....|..|++.-..++ .......+.+ ....+++|+
T Consensus 74 ide~El~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQD 151 (235)
T KOG3202|consen 74 IDEFELSRRRRFIDNLRTQLRQMKSKMAM--SGFANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQD 151 (235)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 111 1222355555555555544444 11111123677775422221 1111111111 123455554
Q ss_pred hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccc
Q 026388 156 AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRD 217 (239)
Q Consensus 156 ~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd 217 (239)
+.|+.-+..+-.+-++|.++-++|..|..+|.....=|-.+.++|-...+-+.++++.+...
T Consensus 152 e~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~ 213 (235)
T KOG3202|consen 152 EGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQC 213 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46888888888899999999999999999999887777777778877777777777744443
No 9
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.054 Score=48.44 Aligned_cols=220 Identities=15% Similarity=0.218 Sum_probs=122.5
Q ss_pred hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388 10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA 89 (239)
Q Consensus 10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~ 89 (239)
++.|-+.=.++...=..+-.++..+.+.-++....++.|. ...+.+.+.+..+|..+|.+.+.++..+.......+
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk----~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~ 131 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDK----REDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLS 131 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 4568888777777777777888877777655432222111 112234566777788888888887776665433233
Q ss_pred CchhHH--HHHHhhhhhHHHHHHHHHHhhcchhh-HHHHHH----HHHh----hh-hhhhhhhccCCCChhhHHH-----
Q 026388 90 PTTSVT--QKLARHRDILHEFTQEFRRIKGNINS-MREHAE----LLSS----VR-DDISEYKASGSMSPRMQIL----- 152 (239)
Q Consensus 90 ~s~s~~--~~l~R~re~L~d~~~ef~r~~~~i~~-~~eR~~----LL~~----~~-~d~~~~~~~~~~~~~~~ll----- 152 (239)
|+.... ....-+-..|+....+|+..+.+.-. -+.|++ .+.+ +. .|+.++... ..+.++++
T Consensus 132 ~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~--~~qe~ql~~~e~~ 209 (305)
T KOG0809|consen 132 PSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDR--TFQEQQLMLFENN 209 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhh--hHHHHHHHHHhcc
Confidence 332211 23455667788889999888876522 222221 1211 11 112222111 11122222
Q ss_pred ----HHhhhhccCchhHHHHHhhh---hhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchH-HHHHH
Q 026388 153 ----RERAAIHGSITHIDDVISQA---QTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTL-ILAAV 224 (239)
Q Consensus 153 ----~E~~~L~~S~~~ld~~l~~a---~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~i-Il~~v 224 (239)
.|++ +.-..++..+++.+ ...-.-...|...+.++-=-+-++.-++-...+=+.++.+..++++- .+++|
T Consensus 210 ~~~~~erE--~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~ 287 (305)
T KOG0809|consen 210 EEVVRERE--KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILM 287 (305)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHH
Confidence 2221 12233333333333 11223346789999999888889988998888888899888888753 34555
Q ss_pred HHHHHHHHHHHHh
Q 026388 225 IAGCTLFLIIYWL 237 (239)
Q Consensus 225 I~~ci~~~l~y~~ 237 (239)
.++|||+++++++
T Consensus 288 L~l~ii~llvlli 300 (305)
T KOG0809|consen 288 LTLLIIALLVLLI 300 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 5556555554443
No 10
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=0.059 Score=41.90 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=61.2
Q ss_pred hhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchh---hhcccch-hhHHHhhhhhhhccccchHHHHHHHHHHHH
Q 026388 155 RAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKV---KVLSDKF-PIIRGLLGSIRRRRSRDTLILAAVIAGCTL 230 (239)
Q Consensus 155 ~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl---~~~~~~l-p~~n~li~~I~~R~~rd~iIl~~vI~~ci~ 230 (239)
+.++++....+|++.++=..=-+...+--+.|....+|- ...++.| -..++|=+++=++..+-.+|++.|++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999988765555555555666655554 4444455 355666677778888888999999888888
Q ss_pred HHHHHHhcC
Q 026388 231 FLIIYWLSK 239 (239)
Q Consensus 231 ~~l~y~~sK 239 (239)
+++.|+|.+
T Consensus 108 iiii~~~~~ 116 (116)
T KOG0860|consen 108 VIIIYIFLW 116 (116)
T ss_pred HHHHHHhcC
Confidence 888887753
No 11
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=93.08 E-value=0.11 Score=38.04 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=39.7
Q ss_pred hhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhccc---chh-hHHHhhhhhhhccccchHHHHHHHHHHHHHH
Q 026388 157 AIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSD---KFP-IIRGLLGSIRRRRSRDTLILAAVIAGCTLFL 232 (239)
Q Consensus 157 ~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~---~lp-~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~ 232 (239)
.+..-...++++-++-.+..+.+....+.|.....|-.++.. .|. .+..+=+++-.+..+=.+|++++++++++++
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence 344444555666666666666666666666555555444444 332 3344444444444444445555544444444
Q ss_pred HHH
Q 026388 233 IIY 235 (239)
Q Consensus 233 l~y 235 (239)
+++
T Consensus 84 ~~~ 86 (89)
T PF00957_consen 84 IIV 86 (89)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=91.57 E-value=0.21 Score=35.18 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=38.3
Q ss_pred hhhccchhhhcccchhhHH-HhhhhhhhccccchHHHHHHHHHHHHHHHHHHhc
Q 026388 186 FGDVQGKVKVLSDKFPIIR-GLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 186 l~~~~~rl~~~~~~lp~~n-~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~s 238 (239)
+..+..||..+..++-..| .+.+++.++--||--|++|+++.+++|+++..++
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~ 67 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLS 67 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777776554 4677888888899999977777777776666554
No 13
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=0.51 Score=36.64 Aligned_cols=82 Identities=15% Similarity=0.264 Sum_probs=46.5
Q ss_pred HHhhhh-ccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccch--HHHHHHHHHHH
Q 026388 153 RERAAI-HGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDT--LILAAVIAGCT 229 (239)
Q Consensus 153 ~E~~~L-~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~--iIl~~vI~~ci 229 (239)
+|+++. ++=...+--+=+....+-.+...|..+|.++.+-+..+ =+.+.+.+.+..+=.++.. +..+..+++++
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdst---s~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV 108 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDST---SGFLSGTMGRLKTMARRSGISLLCWMAVFSLV 108 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhh---HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 555443 33334455555666777788899999999887765544 4555566666555444443 33344433333
Q ss_pred HHH-HHHHh
Q 026388 230 LFL-IIYWL 237 (239)
Q Consensus 230 ~~~-l~y~~ 237 (239)
.|+ +|||+
T Consensus 109 ~~fi~~~~l 117 (118)
T KOG3385|consen 109 AFFILWVWL 117 (118)
T ss_pred HHHHhheee
Confidence 333 44443
No 14
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=86.51 E-value=0.83 Score=32.24 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=31.4
Q ss_pred hhhccchhhhcccchhhHH-HhhhhhhhccccchHHH-HHHHHHHHHHH
Q 026388 186 FGDVQGKVKVLSDKFPIIR-GLLGSIRRRRSRDTLIL-AAVIAGCTLFL 232 (239)
Q Consensus 186 l~~~~~rl~~~~~~lp~~n-~li~~I~~R~~rd~iIl-~~vI~~ci~~~ 232 (239)
+..+++|+-++..++-..| .+-++|..+--||--|| |.||+..++++
T Consensus 17 fne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i 65 (75)
T COG4064 17 FNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMI 65 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3455666666666666554 46678888888998787 55665555544
No 15
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=85.66 E-value=1.1 Score=31.63 Aligned_cols=49 Identities=27% Similarity=0.480 Sum_probs=33.7
Q ss_pred hhhccchhhhcccchhhHH-HhhhhhhhccccchHHHHHHHHHHHHHHHH
Q 026388 186 FGDVQGKVKVLSDKFPIIR-GLLGSIRRRRSRDTLILAAVIAGCTLFLII 234 (239)
Q Consensus 186 l~~~~~rl~~~~~~lp~~n-~li~~I~~R~~rd~iIl~~vI~~ci~~~l~ 234 (239)
++.+.+|+..+..++-..| .+.+++..+--||-=|++|++..+++++++
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~ 63 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIY 63 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4566778888888776555 467888888889988885554444444433
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=85.42 E-value=1.8 Score=37.92 Aligned_cols=87 Identities=8% Similarity=0.113 Sum_probs=59.6
Q ss_pred hhHHHHHhhhhccCchhHHHHHhhhhh-------hhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHH
Q 026388 148 RMQILRERAAIHGSITHIDDVISQAQT-------TRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLI 220 (239)
Q Consensus 148 ~~~ll~E~~~L~~S~~~ld~~l~~a~~-------t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iI 220 (239)
.+..++.++.++. ...+++++.|.+ ...-|.....+|..+...+..-...+...+.=+..+..+... .|.
T Consensus 154 ~e~~l~~~~~~QE--~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~ 230 (251)
T PF09753_consen 154 LEKILQHHRNLQE--DLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWT 230 (251)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHH
Confidence 4566666666654 466777777755 346788888888888888877777887777777777655444 555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026388 221 LAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 221 l~~vI~~ci~~~l~y~~ 237 (239)
+.+++++|++|++.|+|
T Consensus 231 ~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 231 WLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666655555
No 17
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=84.79 E-value=1.2 Score=32.03 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=33.2
Q ss_pred hhhccchhhhcccchhhHH-HhhhhhhhccccchHHHHHHHHHHHHHHH
Q 026388 186 FGDVQGKVKVLSDKFPIIR-GLLGSIRRRRSRDTLILAAVIAGCTLFLI 233 (239)
Q Consensus 186 l~~~~~rl~~~~~~lp~~n-~li~~I~~R~~rd~iIl~~vI~~ci~~~l 233 (239)
++.+.+||.++..++-..| .+.+++..+--||-=||+|++..++++++
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i 65 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLV 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Confidence 4566777888887776555 46788888888998888555444444433
No 18
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=83.16 E-value=7.7 Score=33.70 Aligned_cols=16 Identities=13% Similarity=0.455 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhcC
Q 026388 224 VIAGCTLFLIIYWLSK 239 (239)
Q Consensus 224 vI~~ci~~~l~y~~sK 239 (239)
++.+++++++||||+|
T Consensus 277 ~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 277 GLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHheeC
Confidence 3334444556666665
No 19
>PRK09546 zntB zinc transporter; Reviewed
Probab=82.71 E-value=31 Score=31.14 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHhhcchhh
Q 026388 104 ILHEFTQEFRRIKGNINS 121 (239)
Q Consensus 104 ~L~d~~~ef~r~~~~i~~ 121 (239)
.+..++++.-+++..+..
T Consensus 183 ~l~~lrr~l~~lrr~l~p 200 (324)
T PRK09546 183 ELALLRKQLIVMRRYMAP 200 (324)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666555433
No 20
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.17 E-value=8.8 Score=34.87 Aligned_cols=77 Identities=8% Similarity=0.030 Sum_probs=55.1
Q ss_pred hHHHHHhhhhccCchhHHHHHhhhhh-----------hhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccc
Q 026388 149 MQILRERAAIHGSITHIDDVISQAQT-----------TRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRD 217 (239)
Q Consensus 149 ~~ll~E~~~L~~S~~~ld~~l~~a~~-----------t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd 217 (239)
+.+-.|+.+|.+--+-+++-+.+-.. .-+.+-.|=+.+..+.+-..++...+..+|.=|+++.+...+.
T Consensus 214 Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~ 293 (316)
T KOG3894|consen 214 QLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGL 293 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccc
Confidence 45568888887766644444433322 1266777888889998888889999999999999988877777
Q ss_pred h-HHHHHHH
Q 026388 218 T-LILAAVI 225 (239)
Q Consensus 218 ~-iIl~~vI 225 (239)
+ |++++.+
T Consensus 294 r~~~lf~ll 302 (316)
T KOG3894|consen 294 RVFLLFFLL 302 (316)
T ss_pred hhHHHHHHH
Confidence 4 5555443
No 21
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.14 E-value=35 Score=28.19 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=28.8
Q ss_pred hhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHH
Q 026388 174 TTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 174 ~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~ 236 (239)
.+++....|...+...+.|+.. .+..+.+-|...+.--- +|++|.|+++|.+++-+|.
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~---ei~~lr~~iE~~K~~~l--r~~~g~i~~~~a~~la~~r 174 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDT---EIANLRTEIESLKWDTL--RWLVGVIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555432 23445555554443211 4666777665555554443
No 22
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=71.29 E-value=24 Score=30.94 Aligned_cols=148 Identities=16% Similarity=0.256 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHHHHhchhhHHhhhhhcc--CCchhHHHHHHhhhhhHHHHHH-HHHHhhcchhhH-HHHHHHHHhhhhh
Q 026388 60 WKSMEMEIQSLLEKLLDINDAMSRCAASA--APTTSVTQKLARHRDILHEFTQ-EFRRIKGNINSM-REHAELLSSVRDD 135 (239)
Q Consensus 60 ~~~l~~eIe~~L~~l~~li~~m~~~~~~~--~~s~s~~~~l~R~re~L~d~~~-ef~r~~~~i~~~-~eR~~LL~~~~~d 135 (239)
-+.+...|..+.....++++++..+-... +|+......+..-+..|.+.+. .|...+.....+ .+=..||..|...
T Consensus 89 a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 89 AQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888899999988765411 2343444445555555555531 355444443332 3445677777655
Q ss_pred hhhhhc-cCCC--ChhhHHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhh
Q 026388 136 ISEYKA-SGSM--SPRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLL 207 (239)
Q Consensus 136 ~~~~~~-~~~~--~~~~~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li 207 (239)
...+.. .... .-.+.|-+-...|......+++......++-.=...-+..|..+..|...+...-..++..|
T Consensus 169 ~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 169 FQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211 1111 12345556666777777777776666666666566666666666666666555444444443
No 23
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=70.71 E-value=5.1 Score=24.19 Aligned_cols=14 Identities=29% Similarity=0.906 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 026388 224 VIAGCTLFLIIYWL 237 (239)
Q Consensus 224 vI~~ci~~~l~y~~ 237 (239)
||+++.++|+.+||
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 33445555555554
No 24
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=68.70 E-value=2.8 Score=26.51 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHh
Q 026388 223 AVIAGCTLFLIIYWL 237 (239)
Q Consensus 223 ~vI~~ci~~~l~y~~ 237 (239)
+||+++++++||+|+
T Consensus 22 ~vI~~vl~~~l~~~~ 36 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWY 36 (40)
T ss_pred HHHHHHHHHHhheEE
Confidence 455555555555444
No 25
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.69 E-value=40 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=21.1
Q ss_pred hcccchhhhccchhhhcccchhh-HHHhhhhh
Q 026388 180 GSQRALFGDVQGKVKVLSDKFPI-IRGLLGSI 210 (239)
Q Consensus 180 ~~QR~~l~~~~~rl~~~~~~lp~-~n~li~~I 210 (239)
..|-+++.++-.-+.+....+.. ...|=.++
T Consensus 230 e~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv 261 (297)
T KOG0810|consen 230 ESQGEMVDRIENNVENAVDYVEQGVDHLKKAV 261 (297)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888877777754 44444333
No 26
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.22 E-value=44 Score=29.27 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=12.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcchh
Q 026388 96 QKLARHRDILHEFTQEFRRIKGNIN 120 (239)
Q Consensus 96 ~~l~R~re~L~d~~~ef~r~~~~i~ 120 (239)
..|..|...|.|++.-........+
T Consensus 185 ~~L~~~~~kL~Dl~~~l~eA~~~~~ 209 (264)
T PF06008_consen 185 DDLNDYNAKLQDLRDLLNEAQNKTR 209 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444443
No 27
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=67.48 E-value=15 Score=27.28 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=40.8
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhccCCchhH----HHHHHhhhhhHHHHHHHHHHhh
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSV----TQKLARHRDILHEFTQEFRRIK 116 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~----~~~l~R~re~L~d~~~ef~r~~ 116 (239)
++..+..++...|+.+..-++.|+..+.-.-..+.+ ...+.++|..+.+.+.+...++
T Consensus 36 e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 36 ELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 667888888888888888888888766532111111 1358888888888887776653
No 28
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=67.42 E-value=11 Score=27.34 Aligned_cols=74 Identities=12% Similarity=0.190 Sum_probs=36.6
Q ss_pred hHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhh-------hhhhhccccchHHHHHHHHHHHHHHHHHH
Q 026388 164 HIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLL-------GSIRRRRSRDTLILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 164 ~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li-------~~I~~R~~rd~iIl~~vI~~ci~~~l~y~ 236 (239)
.+..+-++..+|.+-+...=+.+-.-..++.++..+-..+..-- ..++++..-..+-++++++++++++++++
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence 34455555566666666555555566666666665433322222 22333333334444555444444444444
Q ss_pred h
Q 026388 237 L 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 84 ~ 84 (89)
T PF00957_consen 84 I 84 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=67.15 E-value=13 Score=32.31 Aligned_cols=86 Identities=10% Similarity=0.140 Sum_probs=55.4
Q ss_pred hhHHHHHhhhhccCchhHHHHHhhh-------hhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHH
Q 026388 148 RMQILRERAAIHGSITHIDDVISQA-------QTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLI 220 (239)
Q Consensus 148 ~~~ll~E~~~L~~S~~~ld~~l~~a-------~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iI 220 (239)
.|+.+..++.++. ..+.+++..| .+.-+.|..-.+++..+..-+-.-...++..+.=+.+-...+.=+.+-
T Consensus 142 ~dq~l~~q~~lQe--eLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~ 219 (244)
T KOG2678|consen 142 VDQQLEDQDTLQE--ELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFY 219 (244)
T ss_pred HHHHHHhhhHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHH
Confidence 4566666655542 3344444444 344567777788888776666555567777777777777666666667
Q ss_pred HHHHHHHHHHHHHHH
Q 026388 221 LAAVIAGCTLFLIIY 235 (239)
Q Consensus 221 l~~vI~~ci~~~l~y 235 (239)
++++|++|+.|+..+
T Consensus 220 ~~miI~v~~sFVsMi 234 (244)
T KOG2678|consen 220 ITMIIFVILSFVSMI 234 (244)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888876443
No 30
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=66.02 E-value=2 Score=29.91 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHhcC
Q 026388 224 VIAGCTLFLIIYWLSK 239 (239)
Q Consensus 224 vI~~ci~~~l~y~~sK 239 (239)
+.+++++++++|.+.|
T Consensus 23 l~ailLIlf~iyR~rk 38 (64)
T PF01034_consen 23 LFAILLILFLIYRMRK 38 (64)
T ss_dssp --------------S-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333444445555543
No 31
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=65.90 E-value=10 Score=25.97 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=15.2
Q ss_pred HHhhhhhhhccccchHHHHHHHHHHHHH
Q 026388 204 RGLLGSIRRRRSRDTLILAAVIAGCTLF 231 (239)
Q Consensus 204 n~li~~I~~R~~rd~iIl~~vI~~ci~~ 231 (239)
.....+-.+|.++-.+|+.+++.+.+++
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v 52 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAV 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556677776554443333
No 32
>PF12669 P12: Virus attachment protein p12 family
Probab=65.75 E-value=4.2 Score=27.68 Aligned_cols=15 Identities=13% Similarity=0.470 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLI 233 (239)
Q Consensus 219 iIl~~vI~~ci~~~l 233 (239)
||++++|++.+++++
T Consensus 2 iII~~Ii~~~~~~v~ 16 (58)
T PF12669_consen 2 IIIGIIILAAVAYVA 16 (58)
T ss_pred eeHHHHHHHHHHHHH
Confidence 566666555555543
No 33
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=64.71 E-value=71 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=28.6
Q ss_pred chhhhhhcHHHHHHHHhhhcccccccchh-hhhhhhh
Q 026388 5 NLYLQESGWEELRKEARKIEGDLDVKLSS-YAKLGAR 40 (239)
Q Consensus 5 ~~~~~~~~w~~lr~~ar~LE~~id~kL~~-~s~~~~~ 40 (239)
.+.+-..+.++++.=....-.+|+-.+.. |..+...
T Consensus 174 ~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~ 210 (806)
T PF05478_consen 174 TPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDH 210 (806)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35556678899999999999999998888 8777543
No 34
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=61.76 E-value=9.3 Score=30.08 Aligned_cols=6 Identities=17% Similarity=0.611 Sum_probs=2.3
Q ss_pred HHHHHH
Q 026388 219 LILAAV 224 (239)
Q Consensus 219 iIl~~v 224 (239)
||+|+|
T Consensus 69 Ii~gv~ 74 (122)
T PF01102_consen 69 IIFGVM 74 (122)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 334333
No 35
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=61.25 E-value=84 Score=27.97 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhc
Q 026388 105 LHEFTQEFRRIKG 117 (239)
Q Consensus 105 L~d~~~ef~r~~~ 117 (239)
+..++++.-+++.
T Consensus 177 l~~l~~~l~~l~~ 189 (318)
T TIGR00383 177 ILSLRTELLALRR 189 (318)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 36
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=61.01 E-value=14 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 026388 217 DTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 217 d~iIl~~vI~~ci~~~l~y~~ 237 (239)
.+|+++.++|..+.+++++++
T Consensus 50 ~kW~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 50 TKWIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 468888888888877766654
No 37
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=60.06 E-value=8.3 Score=29.14 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFL 232 (239)
Q Consensus 219 iIl~~vI~~ci~~~ 232 (239)
++++.+..+|++++
T Consensus 64 ili~lls~v~IlVi 77 (101)
T PF06024_consen 64 ILISLLSFVCILVI 77 (101)
T ss_pred hHHHHHHHHHHHHH
Confidence 44454444444443
No 38
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=60.01 E-value=11 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhc
Q 026388 216 RDTLILAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 216 rd~iIl~~vI~~ci~~~l~y~~s 238 (239)
+|....-.++.+|++|+++|.|.
T Consensus 11 ~d~~~~lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 11 GDYSGPLLILIISFVFFLITSLG 33 (61)
T ss_pred ccchhHHHHHHHHHHHHHHhhhc
Confidence 46666666777788888888764
No 39
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=57.46 E-value=66 Score=30.69 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=66.1
Q ss_pred hhhhhcHHHHHHHHhhhcccccccchh--------hhhhhhh-------hccCCcccCCC-------CCCCCCCcchhhH
Q 026388 7 YLQESGWEELRKEARKIEGDLDVKLSS--------YAKLGAR-------FTQGGYVDTGS-------PTVGSGRSWKSME 64 (239)
Q Consensus 7 ~~~~~~w~~lr~~ar~LE~~id~kL~~--------~s~~~~~-------~~~~~~~~~~~-------~~~~~~~~~~~l~ 64 (239)
.....+.++||+++-+||+.+|+.=-. .-+|.+. + +...++... |....+ +-..
T Consensus 175 ~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl-Dqpvs~p~~prdia~~~~~~gD-~a~~-- 250 (552)
T KOG2129|consen 175 LLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL-DQPVSTPSLPRDIAKIPDVHGD-EAAA-- 250 (552)
T ss_pred HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccCCCchhhhhcCccccCc-hHHH--
Confidence 445678999999999999998864322 2233221 1 111111000 111111 1122
Q ss_pred HHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 026388 65 MEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSS 131 (239)
Q Consensus 65 ~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~ 131 (239)
....++.+..-++.+...+.... .+..-.+.+|++.-.+++.|..|++..+..+.+|-+-|..
T Consensus 251 --~~~hi~~l~~EveRlrt~l~~Aq--k~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr 313 (552)
T KOG2129|consen 251 --EKLHIDKLQAEVERLRTYLSRAQ--KSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCR 313 (552)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344555555555655543221 1223368888888888888888998888888887766654
No 40
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.48 E-value=1e+02 Score=26.63 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=32.8
Q ss_pred hhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 026388 176 RTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 176 ~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~ 237 (239)
++.|..=|++|..+..-+. .....++++++++.+-|.-=.+|+++. ++.+++++||-|
T Consensus 162 Re~L~rar~rL~~td~~lg---kS~kiL~tM~RR~~~nk~~~~aii~~l-~~~il~ilY~kf 219 (220)
T KOG1666|consen 162 REQLERARERLRETDANLG---KSRKILTTMTRRLIRNKFTLTAIIALL-VLAILLILYSKF 219 (220)
T ss_pred HHHHHHHHHHHHhchhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 4445555555655554433 334455667777666666655555544 455666667655
No 41
>PTZ00234 variable surface protein Vir12; Provisional
Probab=56.05 E-value=8.7 Score=36.64 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=19.9
Q ss_pred HHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHhc
Q 026388 203 IRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 203 ~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~s 238 (239)
+.++-.++..--.|+ ||||+.|...|||+|+|-+|
T Consensus 352 l~~~~d~~dSn~~rn-iim~~ailGtifFlfyyn~s 386 (433)
T PTZ00234 352 LEKTFGILKSEYFRH-SIVGASIIGVLVFLFFFFKS 386 (433)
T ss_pred hhhhhhhhhhHHHHH-HHHHHHHHHHHHHhhhhhcc
Confidence 333334444333333 77777767777777777653
No 42
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=55.51 E-value=10 Score=31.41 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=21.6
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHh
Q 026388 211 RRRRSRDTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 211 ~~R~~rd~iIl~~vI~~ci~~~l~y~~ 237 (239)
+|-.+|.++|-+.||++.+.+++|++.
T Consensus 145 KR~Q~RHR~IG~~VlA~~VA~L~~~F~ 171 (215)
T PF05084_consen 145 KRTQKRHRLIGAVVLAVSVAMLTWFFL 171 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999988888865
No 43
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=55.16 E-value=72 Score=26.12 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=48.5
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhh
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINS 121 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~ 121 (239)
+|.++.-+...+.+++++=+..+...-.. .....|.+..+|+.|.....++..++..+..
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~---~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKK---IGKTVQILTHVKEKLHFLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999988888888777765332 2244688999999999999999999887754
No 44
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=55.12 E-value=50 Score=29.06 Aligned_cols=61 Identities=7% Similarity=0.037 Sum_probs=32.8
Q ss_pred hhhhhhcccchhhhccchhhhcccch----hhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHH
Q 026388 175 TRTVLGSQRALFGDVQGKVKVLSDKF----PIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 175 t~~~L~~QR~~l~~~~~rl~~~~~~l----p~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~ 236 (239)
+-+-...|-+...-+.+-+-+.-..+ +-.++-+.. -|..++.+|+..|+..+.|+|+++++
T Consensus 204 m~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 204 MEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHHHHHHH
Confidence 33445567777777766666555444 334444444 34555667776554444444444443
No 45
>COG4640 Predicted membrane protein [Function unknown]
Probab=54.38 E-value=9.7 Score=35.80 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 026388 219 LILAAVIAGCTLFLIIYWLSK 239 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~sK 239 (239)
+.+++++++|||++++|.|.|
T Consensus 53 i~was~a~~lIlii~~~~fgk 73 (465)
T COG4640 53 IPWASGAFILILIIILFFFGK 73 (465)
T ss_pred ehhHHHHHHHHHHHHHHHHhh
Confidence 455888889999988888865
No 46
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=54.03 E-value=13 Score=24.61 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=44.8
Q ss_pred HHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHH
Q 026388 151 ILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRG 205 (239)
Q Consensus 151 ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~ 205 (239)
+..-...|......+-++-+++..+-..+..|.+.|.++...+..+...+...+.
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~ 61 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444567788888899999999999999999999999999888888777654443
No 47
>PF15056 NRN1: Neuritin protein family
Probab=52.05 E-value=10 Score=28.07 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=17.1
Q ss_pred hhhhhhcHHHHHHHHhhhccc
Q 026388 6 LYLQESGWEELRKEARKIEGD 26 (239)
Q Consensus 6 ~~~~~~~w~~lr~~ar~LE~~ 26 (239)
++-.+.-||.||+++|++.-+
T Consensus 54 ~eeAa~iWEsLrqESrk~~f~ 74 (89)
T PF15056_consen 54 PEEAAAIWESLRQESRKMQFQ 74 (89)
T ss_pred cHHHHHHHHHHHHHHHcCCCC
Confidence 455677899999999998654
No 48
>PRK09738 small toxic polypeptide; Provisional
Probab=51.54 E-value=15 Score=24.52 Aligned_cols=19 Identities=26% Similarity=0.481 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026388 219 LILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~ 237 (239)
.++.++|.+|+-++++.|+
T Consensus 7 ~~~~~livvCiTvL~f~~l 25 (52)
T PRK09738 7 PLVWCVLIVCLTLLIFTYL 25 (52)
T ss_pred eehhhHHHHHHHHHHHHHH
Confidence 4444455677766666554
No 49
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=51.53 E-value=15 Score=24.08 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=13.2
Q ss_pred hhhhhhccccchHHHHHHHHHHHHH
Q 026388 207 LGSIRRRRSRDTLILAAVIAGCTLF 231 (239)
Q Consensus 207 i~~I~~R~~rd~iIl~~vI~~ci~~ 231 (239)
.+.+-+|=+||++-+.|++.+++++
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~v 29 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILV 29 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3445556667887664443333333
No 50
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=50.82 E-value=10 Score=28.65 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026388 220 ILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y~ 236 (239)
++++|+.+.++++++|+
T Consensus 68 lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 68 LLSFVCILVILYAIYYF 84 (101)
T ss_pred HHHHHHHHHHHhhheEE
Confidence 44444444555554443
No 51
>PRK09759 small toxic polypeptide; Provisional
Probab=50.74 E-value=16 Score=24.19 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 026388 217 DTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 217 d~iIl~~vI~~ci~~~l~y~~ 237 (239)
++.++.++|.+|+-++++.|+
T Consensus 3 ~k~~l~~liivCiTvL~f~~l 23 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTWM 23 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHHH
Confidence 345555566777777666655
No 52
>PHA02844 putative transmembrane protein; Provisional
Probab=49.91 E-value=21 Score=25.56 Aligned_cols=18 Identities=22% Similarity=0.408 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~ 236 (239)
+|+..++++|++++++.+
T Consensus 51 ~ii~i~~v~~~~~~~flY 68 (75)
T PHA02844 51 WILTIIFVVFATFLTFLY 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666654443
No 53
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=48.45 E-value=23 Score=25.30 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLIIY 235 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y 235 (239)
+|++.++++|++++++.
T Consensus 51 ~ii~ii~v~ii~~l~fl 67 (72)
T PF12575_consen 51 LIISIIFVLIIVLLTFL 67 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44465656666655333
No 54
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=48.27 E-value=14 Score=28.74 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 026388 218 TLILAAVIAGCTLFLI 233 (239)
Q Consensus 218 ~iIl~~vI~~ci~~~l 233 (239)
-+|||.|++.||+++.
T Consensus 89 ~l~LGvV~GG~i~vLc 104 (127)
T PF06040_consen 89 YLILGVVAGGLIAVLC 104 (127)
T ss_pred hhhHHHHhccHHHHHH
Confidence 3678888888876653
No 55
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=47.81 E-value=28 Score=22.43 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhc
Q 026388 227 GCTLFLIIYWLS 238 (239)
Q Consensus 227 ~ci~~~l~y~~s 238 (239)
+|.+.+++|.++
T Consensus 20 ~~F~gi~~w~~~ 31 (49)
T PF05545_consen 20 VFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHc
Confidence 333344555554
No 56
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.34 E-value=2.9e+02 Score=27.98 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=12.3
Q ss_pred hhhccCchhHHHHHhhhhhhhhhhhcc
Q 026388 156 AAIHGSITHIDDVISQAQTTRTVLGSQ 182 (239)
Q Consensus 156 ~~L~~S~~~ld~~l~~a~~t~~~L~~Q 182 (239)
.+|++-.....+++....+-+++..-+
T Consensus 379 ~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 379 DALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444445555444444444433
No 57
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=47.29 E-value=26 Score=21.76 Aligned_cols=12 Identities=42% Similarity=0.969 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhc
Q 026388 227 GCTLFLIIYWLS 238 (239)
Q Consensus 227 ~ci~~~l~y~~s 238 (239)
..+++++++||+
T Consensus 20 lv~imliif~f~ 31 (43)
T PF11395_consen 20 LVIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHHH
Confidence 334444555653
No 58
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=46.95 E-value=18 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=13.7
Q ss_pred HHhhhhhhhccccchHHHHHHHHH
Q 026388 204 RGLLGSIRRRRSRDTLILAAVIAG 227 (239)
Q Consensus 204 n~li~~I~~R~~rd~iIl~~vI~~ 227 (239)
..++++=.+|+++-.+++.++.+.
T Consensus 30 ~eil~ker~R~r~~~~~~~li~aL 53 (64)
T COG4068 30 GEILNKERKRQRNFMILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666566665555666655433
No 59
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=46.45 E-value=26 Score=20.01 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026388 220 ILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y~~ 237 (239)
|+++++++.++..++|.+
T Consensus 1 ii~~~l~~~L~~YL~~aL 18 (26)
T TIGR02115 1 IILLVLAVGLFIYLFYAL 18 (26)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356666666666666654
No 60
>PRK06287 cobalt transport protein CbiN; Validated
Probab=46.40 E-value=17 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026388 219 LILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~ 237 (239)
.|+++||++.++++++|.+
T Consensus 79 ~ilsgiiGv~i~l~l~~~~ 97 (107)
T PRK06287 79 EIIAMVIGTLLVLALAYGV 97 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777888888877776655
No 61
>PHA03164 hypothetical protein; Provisional
Probab=45.25 E-value=28 Score=25.15 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=10.4
Q ss_pred hhhhhccccchH-HHHHHH
Q 026388 208 GSIRRRRSRDTL-ILAAVI 225 (239)
Q Consensus 208 ~~I~~R~~rd~i-Il~~vI 225 (239)
+.++.|+++=++ ||.|++
T Consensus 49 nlwnnrRktftFlvLtgLa 67 (88)
T PHA03164 49 NLWNNRRKTFTFLVLTGLA 67 (88)
T ss_pred HHHHhhhheeehHHHHHHH
Confidence 456777777665 454443
No 62
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.29 E-value=20 Score=31.56 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=22.5
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHhhcchhh
Q 026388 93 SVTQKLARHRDILHEFTQEFRRIKGNINS 121 (239)
Q Consensus 93 s~~~~l~R~re~L~d~~~ef~r~~~~i~~ 121 (239)
-...+..|||....++-.|.++....+..
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~ 111 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISS 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568889999998888888877776654
No 63
>PHA02650 hypothetical protein; Provisional
Probab=44.28 E-value=27 Score=25.33 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLII 234 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~ 234 (239)
+|+..++++|++++++
T Consensus 52 ~ii~i~~v~i~~l~~f 67 (81)
T PHA02650 52 FIFLIFSLIIVALFSF 67 (81)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445444444444433
No 64
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=43.68 E-value=1.2e+02 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=15.1
Q ss_pred cCchhHHHHHhhhhhhhhhhhcccchhh
Q 026388 160 GSITHIDDVISQAQTTRTVLGSQRALFG 187 (239)
Q Consensus 160 ~S~~~ld~~l~~a~~t~~~L~~QR~~l~ 187 (239)
.-...+..-+..+..-.++|..|+..|-
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555666666666553
No 65
>PF13190 PDGLE: PDGLE domain
Probab=43.48 E-value=25 Score=25.77 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 026388 219 LILAAVIAGCTLFLIIYWLSK 239 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~sK 239 (239)
.|+++||++.++|.++|.+.|
T Consensus 67 ~~lsgivGv~~~~~l~~~i~~ 87 (88)
T PF13190_consen 67 TILSGIVGVALTLALAYGIGK 87 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 588889999999988887654
No 66
>PHA03054 IMV membrane protein; Provisional
Probab=42.67 E-value=32 Score=24.40 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~ 236 (239)
+|+..++++|++++++.+
T Consensus 51 ~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 51 LIIIFFIVLILLLLIYLY 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 67
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=42.64 E-value=40 Score=23.61 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhchhhHHhhhhhccC--CchhHHHHHHhhhhhHHHHHHHHHHhhcchh
Q 026388 65 MEIQSLLEKLLDINDAMSRCAASAA--PTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120 (239)
Q Consensus 65 ~eIe~~L~~l~~li~~m~~~~~~~~--~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~ 120 (239)
.+=...+.+++..+++...++..+. ....-......|...+..|+.++.+++..++
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777777776542 1111125678888899999999988877653
No 68
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=42.28 E-value=29 Score=25.22 Aligned_cols=19 Identities=32% Similarity=0.273 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026388 219 LILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~ 237 (239)
.++|..+.++++.+++|++
T Consensus 11 ~v~GM~~VF~fL~lLi~~i 29 (82)
T TIGR01195 11 TVLGMGIVFLFLSLLIYAV 29 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544443
No 69
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=41.91 E-value=45 Score=19.54 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026388 219 LILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~ 237 (239)
.++|+++++.+++.++|.+
T Consensus 5 ~~l~~~va~~L~vYL~~AL 23 (29)
T PRK14759 5 YSLAGAVSLGLLIYLTYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777777666654
No 70
>PHA02819 hypothetical protein; Provisional
Probab=41.78 E-value=33 Score=24.32 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~ 236 (239)
+|+..++++|++++++.+
T Consensus 49 ~ii~l~~~~~~~~~~flY 66 (71)
T PHA02819 49 LIIGLVTIVFVIIFIIFY 66 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555655554443
No 71
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=41.24 E-value=22 Score=26.24 Aligned_cols=9 Identities=22% Similarity=0.553 Sum_probs=3.9
Q ss_pred hhhhhhhcc
Q 026388 206 LLGSIRRRR 214 (239)
Q Consensus 206 li~~I~~R~ 214 (239)
++++.++|.
T Consensus 4 i~kK~K~k~ 12 (96)
T PF13800_consen 4 ILKKAKRKS 12 (96)
T ss_pred HHHHHHHHH
Confidence 344444433
No 72
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=40.91 E-value=16 Score=26.02 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026388 222 AAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 222 ~~vI~~ci~~~l~y~~s 238 (239)
-|+.|+|++++++|..+
T Consensus 12 QG~fA~LFv~Ll~yvlK 28 (71)
T PF10960_consen 12 QGIFAVLFVWLLFYVLK 28 (71)
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 56778888888888763
No 73
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=40.72 E-value=44 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026388 220 ILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y~~ 237 (239)
|+++++++.++..++|.+
T Consensus 2 ~l~~~v~~~L~~YL~~aL 19 (25)
T PF09604_consen 2 ILGGIVAVALFVYLFYAL 19 (25)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456666666666666554
No 74
>PHA02975 hypothetical protein; Provisional
Probab=40.53 E-value=35 Score=24.05 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~ 236 (239)
+|+..++++|++++++.+
T Consensus 47 ~ii~i~~v~~~~~~~flY 64 (69)
T PHA02975 47 LIIFIIFITCIAVFTFLY 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555556666554433
No 75
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=40.25 E-value=45 Score=29.89 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=40.6
Q ss_pred hhhhcccchhhhccchhhhcccchhhHHHhhhh-hhhccccchHHHHHHHHHHHHHHHHHHh
Q 026388 177 TVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGS-IRRRRSRDTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 177 ~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~-I~~R~~rd~iIl~~vI~~ci~~~l~y~~ 237 (239)
.-...|.+...++---+.++...+..-|+=+.+ ...++++.++-+++++.+||+.+|++..
T Consensus 216 ~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~l~ 277 (283)
T COG5325 216 SLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVSLI 277 (283)
T ss_pred HHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHHHH
Confidence 334678888888888888888777655555555 4455555677777676677766655543
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.04 E-value=53 Score=35.32 Aligned_cols=39 Identities=0% Similarity=0.093 Sum_probs=28.2
Q ss_pred hcccchhhhccchhhhcccchhhHHHhhhhhhhccccch
Q 026388 180 GSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDT 218 (239)
Q Consensus 180 ~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~ 218 (239)
..=++....+-..+..+..++.-+...|...+.+..++.
T Consensus 1601 ~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns 1639 (1758)
T KOG0994|consen 1601 AKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNS 1639 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333455667777778888888888888888887776663
No 77
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=39.67 E-value=34 Score=24.11 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026388 220 ILAAVIAGCTLFLIIY 235 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y 235 (239)
|+|..|.+++++++++
T Consensus 9 i~Gm~iVF~~L~lL~~ 24 (79)
T PF04277_consen 9 IIGMGIVFLVLILLIL 24 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455544444444433
No 78
>PHA02692 hypothetical protein; Provisional
Probab=39.59 E-value=38 Score=23.99 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=9.3
Q ss_pred HHHH-HHHHHHHHHHHHHH
Q 026388 219 LILA-AVIAGCTLFLIIYW 236 (239)
Q Consensus 219 iIl~-~vI~~ci~~~l~y~ 236 (239)
+|+. .++++|++++++.+
T Consensus 48 ~ii~~~~~~~~~vll~flY 66 (70)
T PHA02692 48 VFLIGLIAAAIGVLLCFHY 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444 55566666554443
No 79
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=39.32 E-value=56 Score=19.06 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026388 219 LILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~ 237 (239)
+|.|+++.++++..+.|.+
T Consensus 5 vi~g~llv~lLl~YLvYAL 23 (29)
T PRK14750 5 IVCGALLVLLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556554444444455543
No 80
>PHA02955 hypothetical protein; Provisional
Probab=39.30 E-value=27 Score=30.11 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 026388 219 LILAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~s 238 (239)
+|++.|+++|++++++|+..
T Consensus 182 ~ii~~v~ii~~~v~l~yikR 201 (213)
T PHA02955 182 FIIYIVLCLLILIILGYIYR 201 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56666766666666666543
No 81
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.29 E-value=2.7e+02 Score=24.21 Aligned_cols=69 Identities=23% Similarity=0.332 Sum_probs=38.7
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhc----chhhHHHHHHHH
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKG----NINSMREHAELL 129 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~----~i~~~~eR~~LL 129 (239)
.+..+..-+..+=..++.+-+....++... .....-.+..|++.|..|+.=|.|.+. ++.....|-+..
T Consensus 85 ~~~~l~~~l~~~s~~~~~~s~~~~~~a~~~--~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~ 157 (246)
T cd07597 85 TWGDINEGLSSLSKHFQLLSDLSEDEARAE--EDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELN 157 (246)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344444444444444445555555444322 123345689999999999998887663 344444444443
No 82
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=37.90 E-value=33 Score=25.88 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 026388 222 AAVIAGCTLFLIIY 235 (239)
Q Consensus 222 ~~vI~~ci~~~l~y 235 (239)
|.+|+++++|++++
T Consensus 53 GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 53 GILIAFWIFFIVLT 66 (103)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 83
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=37.65 E-value=29 Score=25.57 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=8.6
Q ss_pred hhhhccccchHHHHHHHHHHH
Q 026388 209 SIRRRRSRDTLILAAVIAGCT 229 (239)
Q Consensus 209 ~I~~R~~rd~iIl~~vI~~ci 229 (239)
+|-+|.++-.++--.+|++|+
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 344455444433333333333
No 84
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.28 E-value=3.9e+02 Score=29.18 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=9.4
Q ss_pred cHHHHHHHHhhhccccccc
Q 026388 12 GWEELRKEARKIEGDLDVK 30 (239)
Q Consensus 12 ~w~~lr~~ar~LE~~id~k 30 (239)
+-+++..+...++.+++..
T Consensus 823 s~~ele~ei~~~~~el~~l 841 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTV 841 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444
No 85
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=37.17 E-value=1.3e+02 Score=20.29 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=17.7
Q ss_pred chhhHHHHHHHHHHHhchhhHHhhhhh
Q 026388 60 WKSMEMEIQSLLEKLLDINDAMSRCAA 86 (239)
Q Consensus 60 ~~~l~~eIe~~L~~l~~li~~m~~~~~ 86 (239)
+.....+|+..+.++...++.|...+.
T Consensus 16 ~~~~~~~l~~~~~~l~~~~~~l~~~W~ 42 (86)
T PF06013_consen 16 LQAQADELQSQLQQLESSIDSLQASWQ 42 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 455566777777777777777755554
No 86
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=36.94 E-value=18 Score=24.11 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=42.6
Q ss_pred hhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhh
Q 026388 157 AIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRR 212 (239)
Q Consensus 157 ~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~ 212 (239)
.|+.=...+.++-+++..+-..+..|.+.|.++...+..+...+...+.=+.+..+
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777888888899999999999999999999888888766655555443
No 87
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=36.92 E-value=24 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 026388 218 TLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 218 ~iIl~~vI~~ci~~~l~y~~ 237 (239)
..|-+.+|+.+++.|.||.|
T Consensus 59 N~is~a~i~alViaIY~YTf 78 (108)
T KOG4782|consen 59 NHISFAGIGALVIAIYGYTF 78 (108)
T ss_pred hhhhhHHHHHHHHHhhhhee
Confidence 56777888888888888876
No 88
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=36.49 E-value=48 Score=28.92 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=22.0
Q ss_pred hhcHHHHHHHHhhhcccccccchhhhhh
Q 026388 10 ESGWEELRKEARKIEGDLDVKLSSYAKL 37 (239)
Q Consensus 10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~ 37 (239)
.+.|+++=+-|.++++++-.-...-+.|
T Consensus 21 ~P~~~d~v~ka~K~~saL~a~~~A~~~f 48 (231)
T cd07643 21 YPLWEDFVSKATKLHSQLRATIVATSAF 48 (231)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999987766554444
No 89
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=36.42 E-value=34 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC
Q 026388 218 TLILAAVIAGCTLFLIIYWLSK 239 (239)
Q Consensus 218 ~iIl~~vI~~ci~~~l~y~~sK 239 (239)
.+.+.+|++++++++.+|...|
T Consensus 62 ~fg~~~vVGvvLlv~viwLl~~ 83 (87)
T PF11190_consen 62 DFGATVVVGVVLLVFVIWLLTK 83 (87)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 4677778888888877776543
No 90
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=35.44 E-value=61 Score=20.22 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTL 230 (239)
Q Consensus 219 iIl~~vI~~ci~ 230 (239)
+|.|.++++.++
T Consensus 8 IIv~V~vg~~ii 19 (38)
T PF02439_consen 8 IIVAVVVGMAII 19 (38)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 91
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=35.34 E-value=2.7e+02 Score=24.30 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHhchhhHHhhhhhc---cCCc----hhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHhhh
Q 026388 61 KSMEMEIQSLLEKLLDINDAMSRCAAS---AAPT----TSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLSSVR 133 (239)
Q Consensus 61 ~~l~~eIe~~L~~l~~li~~m~~~~~~---~~~s----~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~~~ 133 (239)
.....+++..|++-..-.++|...... -+|+ ......+.+|+..|.+-..-...+...+.....--++|.+..
T Consensus 42 ~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~ 121 (296)
T PF13949_consen 42 RSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPI 121 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCh
Confidence 445566666666666666666654321 1233 244457888888888888777888887877666666776543
No 92
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.01 E-value=28 Score=31.21 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=45.4
Q ss_pred hhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhh
Q 026388 157 AIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIR 211 (239)
Q Consensus 157 ~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~ 211 (239)
+-.++..++.+.-..|..|+..|..|++.|.++...+-.+...+-.....|..++
T Consensus 80 St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 80 STRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999999999888887766666665554
No 93
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.79 E-value=51 Score=22.66 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhc
Q 026388 224 VIAGCTLFLIIYWLS 238 (239)
Q Consensus 224 vI~~ci~~~l~y~~s 238 (239)
++++|++.++||.|+
T Consensus 17 ~~~l~fiavi~~ayr 31 (60)
T COG4736 17 AFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHHHhc
Confidence 445555556666664
No 94
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.73 E-value=3.1e+02 Score=23.93 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=33.2
Q ss_pred hhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHH
Q 026388 171 QAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 171 ~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~ 236 (239)
....+..++..+|+-++++-..+.. .++..+.+.+++.-|+++++++|++|..
T Consensus 114 ~k~~~~~ei~k~r~e~~~ml~evK~-------------~~E~y~k~~k~~~~gi~aml~Vf~LF~l 166 (230)
T PF03904_consen 114 LKNIAQNEIKKVREENKSMLQEVKQ-------------SHEKYQKRQKSMYKGIGAMLFVFMLFAL 166 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344566677777766666544443 5666666777777667677776665543
No 95
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=34.65 E-value=58 Score=20.62 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 026388 217 DTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 217 d~iIl~~vI~~ci~~~l~y~~ 237 (239)
-.|||+|.+++.++-+++.-+
T Consensus 18 PvI~L~GF~~Vav~~~~lL~~ 38 (42)
T PF09574_consen 18 PVIILSGFAAVAVASIWLLSL 38 (42)
T ss_pred hHHHHhhHHHHHHHHHHHHHh
Confidence 457887777766655444433
No 96
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=34.28 E-value=52 Score=22.46 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=15.2
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 026388 214 RSRDTLILAAVIAGCTLFLI 233 (239)
Q Consensus 214 ~~rd~iIl~~vI~~ci~~~l 233 (239)
++|+-||...++++|++=++
T Consensus 16 ~~r~e~itFl~la~~l~Pil 35 (62)
T COG4459 16 EKRSEWITFLFLAFGLFPIL 35 (62)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 44668999999999988443
No 97
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=34.14 E-value=38 Score=31.69 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=12.6
Q ss_pred hhhhcccchhhhccchhhhccc-chhh
Q 026388 177 TVLGSQRALFGDVQGKVKVLSD-KFPI 202 (239)
Q Consensus 177 ~~L~~QR~~l~~~~~rl~~~~~-~lp~ 202 (239)
.++..=|...+.++-|+.=+.. -+|.
T Consensus 50 ~d~~~lr~iarkt~~rv~I~~r~GlpF 76 (382)
T TIGR02876 50 KDFKKLKPIARKTGCKVKIIARKGLPF 76 (382)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCchh
Confidence 3444445555555555554443 3454
No 98
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=33.40 E-value=47 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.411 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 026388 217 DTLILAAVIAGCTLFLIIY 235 (239)
Q Consensus 217 d~iIl~~vI~~ci~~~l~y 235 (239)
+-+|=.+.|.+|++++.+.
T Consensus 30 ~lfvnf~lilicllli~ii 48 (52)
T TIGR01294 30 NLFINFCLILICLLLICII 48 (52)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344466666666665444
No 99
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=33.28 E-value=43 Score=25.42 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=15.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHh
Q 026388 215 SRDTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 215 ~rd~iIl~~vI~~ci~~~l~y~~ 237 (239)
++..++.|++|+.+++-+++|.|
T Consensus 48 R~rN~~Tgl~L~~~v~gIY~YTi 70 (100)
T PF09813_consen 48 RRRNLLTGLALGAFVVGIYAYTI 70 (100)
T ss_pred hhhhHHHHHHHHHHHHHHHhhee
Confidence 34457778787777777777755
No 100
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.89 E-value=39 Score=24.91 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=7.9
Q ss_pred HHhhhhhHHHHHHHHHHh
Q 026388 98 LARHRDILHEFTQEFRRI 115 (239)
Q Consensus 98 l~R~re~L~d~~~ef~r~ 115 (239)
+.+..+.+.+++.+...+
T Consensus 7 Id~lEekl~~cr~~le~v 24 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAV 24 (85)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 101
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=31.64 E-value=81 Score=22.30 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=30.1
Q ss_pred hcccchhhHHHhhhhhhhccccchHHH-HHHHHHHHHHHHHHH
Q 026388 195 VLSDKFPIIRGLLGSIRRRRSRDTLIL-AAVIAGCTLFLIIYW 236 (239)
Q Consensus 195 ~~~~~lp~~n~li~~I~~R~~rd~iIl-~~vI~~ci~~~l~y~ 236 (239)
...+-++.+..=++++-+=.+++.+.- ..|+++++++.+++|
T Consensus 19 ~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~ 61 (73)
T COG0690 19 KFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLY 61 (73)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888889999999999997754 556666666655444
No 102
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=31.52 E-value=67 Score=20.81 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 026388 221 LAAVIAGCTLFLIIYWLSK 239 (239)
Q Consensus 221 l~~vI~~ci~~~l~y~~sK 239 (239)
+.++++.|+++.++-.+.|
T Consensus 30 i~aviGAiill~i~~~i~r 48 (48)
T PF04226_consen 30 IVAVIGAIILLFIYRLIRR 48 (48)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4556788888877766653
No 103
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=29.81 E-value=84 Score=19.82 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHhhcchhhH
Q 026388 101 HRDILHEFTQEFRRIKGNINSM 122 (239)
Q Consensus 101 ~re~L~d~~~ef~r~~~~i~~~ 122 (239)
.+++|.+.++|+++.|..|-.+
T Consensus 9 KqEIL~EvrkEl~K~K~EIIeA 30 (40)
T PF08776_consen 9 KQEILEEVRKELQKVKEEIIEA 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888766443
No 104
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.79 E-value=57 Score=25.64 Aligned_cols=11 Identities=27% Similarity=0.166 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q 026388 219 LILAAVIAGCT 229 (239)
Q Consensus 219 iIl~~vI~~ci 229 (239)
.+++|||++.+
T Consensus 72 gv~aGvIg~Il 82 (122)
T PF01102_consen 72 GVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777766443
No 105
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=29.31 E-value=39 Score=21.65 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026388 221 LAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 221 l~~vI~~ci~~~l~y~~ 237 (239)
+.++|.+|+-++++.|+
T Consensus 4 l~~liviCiTvl~~~~l 20 (43)
T PF01848_consen 4 LLCLIVICITVLIFTWL 20 (43)
T ss_pred ehhHHHHHHHHHHHHHH
Confidence 34566777777666655
No 106
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=29.20 E-value=99 Score=17.96 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 026388 218 TLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 218 ~iIl~~vI~~ci~~~l~y~~ 237 (239)
.+|+|...++++-++...|+
T Consensus 5 aWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47888877777666655544
No 107
>PHA03010 hypothetical protein; Provisional
Probab=29.05 E-value=58 Score=30.56 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=15.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhc
Q 026388 214 RSRDTLILAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 214 ~~rd~iIl~~vI~~ci~~~l~y~~s 238 (239)
..|-.-||+.| ..|+++++.++||
T Consensus 503 ~~q~n~il~iv-il~iilifmfvfs 526 (546)
T PHA03010 503 GLQLNAILAIV-ILCIILIFMFVFS 526 (546)
T ss_pred cchhhhHHHHH-HHHHHHHHHHHHH
Confidence 33445588877 4677777766664
No 108
>PHA02902 putative IMV membrane protein; Provisional
Probab=29.00 E-value=67 Score=22.44 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 026388 222 AAVIAGCTLFLIIY 235 (239)
Q Consensus 222 ~~vI~~ci~~~l~y 235 (239)
..||.+|.+++..|
T Consensus 11 v~v~Ivclliya~Y 24 (70)
T PHA02902 11 VIVIIFCLLIYAAY 24 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555444
No 109
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.76 E-value=4.8e+02 Score=24.25 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=11.6
Q ss_pred cHHHHHHHHhhhcccccccchhhh
Q 026388 12 GWEELRKEARKIEGDLDVKLSSYA 35 (239)
Q Consensus 12 ~w~~lr~~ar~LE~~id~kL~~~s 35 (239)
...++..+...++.+.....+.+.
T Consensus 216 ~l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 216 RLNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555544444444443
No 110
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=28.75 E-value=99 Score=18.03 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~ 236 (239)
.|.|++.++.++..+.|.
T Consensus 5 vi~G~ilv~lLlgYLvyA 22 (29)
T PRK14748 5 VITGVLLVFLLLGYLVYA 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666555544445554
No 111
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.63 E-value=1e+02 Score=26.33 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=9.1
Q ss_pred HHHhhhhhHHHHHHHHHHhh
Q 026388 97 KLARHRDILHEFTQEFRRIK 116 (239)
Q Consensus 97 ~l~R~re~L~d~~~ef~r~~ 116 (239)
++......+.+++.++..+.
T Consensus 94 rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 112
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=28.34 E-value=63 Score=20.96 Aligned_cols=17 Identities=24% Similarity=0.424 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLIIY 235 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y 235 (239)
++=.+.|.+|++++.+.
T Consensus 32 fvnfclilicllli~ii 48 (52)
T PF04272_consen 32 FVNFCLILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34466666666665444
No 113
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=27.92 E-value=83 Score=20.49 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFL 232 (239)
Q Consensus 219 iIl~~vI~~ci~~~ 232 (239)
+|+..++++|+++.
T Consensus 7 iili~iv~~Cl~ly 20 (47)
T PRK10299 7 VVLVVVVLACLLLW 20 (47)
T ss_pred hHHHHHHHHHHHHH
Confidence 45566667777754
No 114
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.66 E-value=75 Score=22.57 Aligned_cols=18 Identities=22% Similarity=0.227 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026388 220 ILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y~~ 237 (239)
|+++|+++++.++.-||+
T Consensus 7 il~ivl~ll~G~~~G~fi 24 (71)
T COG3763 7 ILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555554
No 115
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.61 E-value=2.4e+02 Score=27.93 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHhhhhhhhhhhccCCCChhhHHHHHhhhhccCchhHHHHHhhhhhhhh
Q 026388 106 HEFTQEFRRIKGNINSMREHAELLSSVRDDISEYKASGSMSPRMQILRERAAIHGSITHIDDVISQAQTTRT 177 (239)
Q Consensus 106 ~d~~~ef~r~~~~i~~~~eR~~LL~~~~~d~~~~~~~~~~~~~~~ll~E~~~L~~S~~~ld~~l~~a~~t~~ 177 (239)
....++...++.+.++..+|.++|.-.-..++..... ..+...|..|+.+|.++....+.+ ..|.+++.
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~--~gE~e~L~~e~~rLsn~ekl~~~~-~~a~~~L~ 235 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQ--PGEDEELEEERKRLSNSEKLAEAI-QNALELLS 235 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHhhHHHHHHHH-HHHHHHHh
Confidence 3444555566666666777888886544455543332 235678999999999888776655 55555554
No 116
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=27.53 E-value=92 Score=17.04 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.1
Q ss_pred HHHHhhhhhHHHHHHHH
Q 026388 96 QKLARHRDILHEFTQEF 112 (239)
Q Consensus 96 ~~l~R~re~L~d~~~ef 112 (239)
+-++.|...+.++++||
T Consensus 5 ~LlrkY~g~i~~Lr~Ef 21 (22)
T PF03789_consen 5 QLLRKYSGYISSLRQEF 21 (22)
T ss_pred HHHHHHhHhHHHHHHHh
Confidence 45778899999999887
No 117
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.39 E-value=3e+02 Score=28.11 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhh
Q 026388 14 EELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAA 86 (239)
Q Consensus 14 ~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~ 86 (239)
+.+-+.+..|..+.+.++.....+...... -.+..+.+...+++..++=+.+..+++....
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~------------l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKS------------LRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666677666666665422100 0001244555566666665556555554443
No 118
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.04 E-value=1.6e+02 Score=25.56 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHh
Q 026388 104 ILHEFTQEFRRI 115 (239)
Q Consensus 104 ~L~d~~~ef~r~ 115 (239)
.|+++.+||.+.
T Consensus 87 YLedL~~EF~~~ 98 (216)
T KOG0862|consen 87 YLEDLAQEFDKS 98 (216)
T ss_pred HHHHHHHHHHHh
Confidence 355566666544
No 119
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=27.00 E-value=1.2e+02 Score=24.19 Aligned_cols=71 Identities=15% Similarity=0.349 Sum_probs=48.9
Q ss_pred HHHhhhhccCchhHHHHHhhhh-------hhhhhhhcccchhhhccchhhhcccc----hhhHHHhhhhhhhccccchHH
Q 026388 152 LRERAAIHGSITHIDDVISQAQ-------TTRTVLGSQRALFGDVQGKVKVLSDK----FPIIRGLLGSIRRRRSRDTLI 220 (239)
Q Consensus 152 l~E~~~L~~S~~~ld~~l~~a~-------~t~~~L~~QR~~l~~~~~rl~~~~~~----lp~~n~li~~I~~R~~rd~iI 220 (239)
-+-.+.|+.-+.-+.+++.||. +++.--.+|...|..++.++..+... +|.+-++++-... +.+.
T Consensus 48 n~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~vmk----qny~ 123 (177)
T PF12495_consen 48 NQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDVMK----QNYV 123 (177)
T ss_pred HHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----hhhh
Confidence 3445666777777888888872 33444467999999999999888774 5888888876553 4455
Q ss_pred HHHHHH
Q 026388 221 LAAVIA 226 (239)
Q Consensus 221 l~~vI~ 226 (239)
++.-|-
T Consensus 124 lslqie 129 (177)
T PF12495_consen 124 LSLQIE 129 (177)
T ss_pred hhhhHH
Confidence 554443
No 120
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.94 E-value=3.4e+02 Score=23.10 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhchhhHHhhhhhc-cCCchhHHHHHHhhhhhHHHHHH
Q 026388 65 MEIQSLLEKLLDINDAMSRCAAS-AAPTTSVTQKLARHRDILHEFTQ 110 (239)
Q Consensus 65 ~eIe~~L~~l~~li~~m~~~~~~-~~~s~s~~~~l~R~re~L~d~~~ 110 (239)
..+.+.|.+|+..+......+.. ..+..+....+++--+-|-+|+.
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~ 145 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKE 145 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHH
Confidence 35677788888888888877665 22232333445554466777764
No 121
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=26.56 E-value=60 Score=29.09 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 026388 217 DTLILAAVIAGCTLFLIIY 235 (239)
Q Consensus 217 d~iIl~~vI~~ci~~~l~y 235 (239)
|=-+|+.++||||=|||+|
T Consensus 172 Nlr~lALflAFaINFILLF 190 (274)
T PF06459_consen 172 NLRFLALFLAFAINFILLF 190 (274)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3447899999999877544
No 122
>PRK14749 hypothetical protein; Provisional
Probab=26.30 E-value=1.2e+02 Score=17.84 Aligned_cols=19 Identities=11% Similarity=0.350 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 026388 218 TLILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 218 ~iIl~~vI~~ci~~~l~y~ 236 (239)
.+|||...++.+-++-..|
T Consensus 5 aWiLG~~lAc~f~ilna~w 23 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLVW 23 (30)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788877666655554444
No 123
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.07 E-value=2.9e+02 Score=23.53 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=48.0
Q ss_pred CCcchhhhhhcHHH--HHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhh
Q 026388 2 TDPNLYLQESGWEE--LRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDIND 79 (239)
Q Consensus 2 ~~~~~~~~~~~w~~--lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~ 79 (239)
||.+. +....||. ||++-..||..+ ..-.+-+..- . ........-+..|.|.+|+=-...+.
T Consensus 86 TdfS~-~~~~dwEevrLkrELa~Le~~l----~~~~~~~~~~--------~---~~~~~~~~lvk~e~EqLL~YK~~ql~ 149 (195)
T PF12761_consen 86 TDFSA-TEGTDWEEVRLKRELAELEEKL----SKVEQAAESR--------R---SDTDSKPALVKREFEQLLDYKERQLR 149 (195)
T ss_pred CCCCC-CCCCchHHHHHHHHHHHHHHHH----HHHHHHHHhc--------c---cCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 56555 66789998 888888777655 3333322110 0 01111335567788888874433333
Q ss_pred HHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcch
Q 026388 80 AMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 80 ~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i 119 (239)
.+.. ...+++ .-+...++.|.........+...+
T Consensus 150 ~~~~--~~~~~~----~~l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 150 ELEE--GRSKSG----KNLKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred hhhc--cCCCCC----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 111111 114445555555555555544433
No 124
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=25.88 E-value=85 Score=23.08 Aligned_cols=7 Identities=14% Similarity=0.259 Sum_probs=3.3
Q ss_pred hhHHHhh
Q 026388 201 PIIRGLL 207 (239)
Q Consensus 201 p~~n~li 207 (239)
..+..++
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 3444554
No 125
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=25.56 E-value=79 Score=23.18 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026388 220 ILAAVIAGCTLFLIIY 235 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y 235 (239)
++|.+..++++.+++|
T Consensus 16 ~~GM~~VF~fL~lLi~ 31 (85)
T PRK03814 16 LTGMGVVFIFLTLLVY 31 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344433333333333
No 126
>PRK11637 AmiB activator; Provisional
Probab=25.27 E-value=3.3e+02 Score=25.57 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=12.6
Q ss_pred HHHHHHHhhhcccccccchhhhhh
Q 026388 14 EELRKEARKIEGDLDVKLSSYAKL 37 (239)
Q Consensus 14 ~~lr~~ar~LE~~id~kL~~~s~~ 37 (239)
+++..+..+++.+|+.+...+..+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~ 66 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQ 66 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444433
No 127
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=25.21 E-value=74 Score=24.97 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 026388 217 DTLILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 217 d~iIl~~vI~~ci~~~l~y~ 236 (239)
|++.+.....++++|.++||
T Consensus 218 DR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 218 DRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhC
Confidence 45666666666677777777
No 128
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=25.16 E-value=94 Score=19.64 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=11.9
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 026388 216 RDTLILAAVIAGCTLFLIIY 235 (239)
Q Consensus 216 rd~iIl~~vI~~ci~~~l~y 235 (239)
--.+||+|.+++..+-+++.
T Consensus 17 mPvIil~GF~~Va~~si~lL 36 (42)
T TIGR02808 17 MPFIILSGFVAVAVTSILLL 36 (42)
T ss_pred cchHHhhhhHHHHHHHHHHH
Confidence 34578877766655544433
No 129
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=25.05 E-value=1.3e+02 Score=17.78 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 026388 218 TLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 218 ~iIl~~vI~~ci~~~l~y~~ 237 (239)
.+|+|...++.+-++-..|+
T Consensus 5 aWilG~~lA~~~~v~~a~w~ 24 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAMWL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47888776666555544443
No 130
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=24.99 E-value=5.3e+02 Score=23.45 Aligned_cols=20 Identities=5% Similarity=-0.122 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 026388 218 TLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 218 ~iIl~~vI~~ci~~~l~y~~ 237 (239)
.+++++++.+++.++.+|||
T Consensus 291 g~~~~l~~~~~~~~~~~~~f 310 (316)
T PRK11085 291 GYPGAIILMILAGLAPYLYF 310 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444
No 131
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=24.70 E-value=61 Score=29.74 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=5.6
Q ss_pred hhhccccchHH
Q 026388 210 IRRRRSRDTLI 220 (239)
Q Consensus 210 I~~R~~rd~iI 220 (239)
...+++++.+|
T Consensus 103 ~~~~~~~~~~~ 113 (331)
T PRK10856 103 GKRRKKRDGWL 113 (331)
T ss_pred cccccccCCch
Confidence 44455555544
No 132
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.68 E-value=64 Score=27.89 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 026388 222 AAVIAGCTLFL 232 (239)
Q Consensus 222 ~~vI~~ci~~~ 232 (239)
|+++.+|.|++
T Consensus 138 AVLfLICT~Lf 148 (227)
T PF05399_consen 138 AVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 133
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.47 E-value=1.2e+02 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHhchhhHHhhhhhc
Q 026388 61 KSMEMEIQSLLEKLLDINDAMSRCAAS 87 (239)
Q Consensus 61 ~~l~~eIe~~L~~l~~li~~m~~~~~~ 87 (239)
..+..||+..|.+..+-++..+.+...
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i~~K 30 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEIYEK 30 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766554
No 134
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=24.23 E-value=87 Score=22.83 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026388 220 ILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y~ 236 (239)
++|..+.++++.+++|.
T Consensus 15 vlGMg~VfvFL~lLI~~ 31 (82)
T PRK02919 15 FLGMGFVLAFLFLLIFA 31 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555444444444443
No 135
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=24.12 E-value=39 Score=25.29 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 026388 228 CTLFLIIYW 236 (239)
Q Consensus 228 ci~~~l~y~ 236 (239)
++.|++||+
T Consensus 82 lv~~l~w~f 90 (96)
T PTZ00382 82 LVGFLCWWF 90 (96)
T ss_pred HHHHHhhee
Confidence 333444443
No 136
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.83 E-value=58 Score=26.99 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=1.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcch
Q 026388 96 QKLARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 96 ~~l~R~re~L~d~~~ef~r~~~~i 119 (239)
-.+||.|+.+.|+++|. -++..+
T Consensus 31 ~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 31 EEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HCH---------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHh
Confidence 35999999999999999 554444
No 137
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=23.49 E-value=1.9e+02 Score=28.57 Aligned_cols=53 Identities=11% Similarity=0.261 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhH-HHHHHHHHHhhc
Q 026388 60 WKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDIL-HEFTQEFRRIKG 117 (239)
Q Consensus 60 ~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L-~d~~~ef~r~~~ 117 (239)
...|.++|+..|.+..+-++..+.+..+...+.. .-+|+.| .|+++|.++++.
T Consensus 3 ~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n-----~sqkeK~e~DLKkEIKKLQR 56 (575)
T KOG2150|consen 3 KRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANN-----VSQKEKLESDLKKEIKKLQR 56 (575)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999988776532211 1133333 356666654443
No 138
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.13 E-value=4.9e+02 Score=27.94 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=22.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 026388 97 KLARHRDILHEFTQEFRRIKGNINSMREHAELLSS 131 (239)
Q Consensus 97 ~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~ 131 (239)
.+.-++....+++.+++.++.++++.+.+.+.+..
T Consensus 345 ~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k 379 (1074)
T KOG0250|consen 345 DLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK 379 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666777777777776666666654
No 139
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=23.13 E-value=5.7e+02 Score=23.20 Aligned_cols=70 Identities=9% Similarity=0.188 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHhchhhHHhhhhh-------ccCCch----hHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHH
Q 026388 62 SMEMEIQSLLEKLLDINDAMSRCAA-------SAAPTT----SVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELLS 130 (239)
Q Consensus 62 ~l~~eIe~~L~~l~~li~~m~~~~~-------~~~~s~----s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~ 130 (239)
.+...++..|++..++++.-..+.. ..||+. .....+.+|++.|.+-...=..+...+.....--.||.
T Consensus 86 ~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~ 165 (337)
T cd09234 86 DVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLA 165 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 3345555555555555554433221 112222 22335666777666666555555555554444445665
Q ss_pred h
Q 026388 131 S 131 (239)
Q Consensus 131 ~ 131 (239)
+
T Consensus 166 ~ 166 (337)
T cd09234 166 G 166 (337)
T ss_pred C
Confidence 4
No 140
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=22.65 E-value=1.1e+02 Score=22.53 Aligned_cols=17 Identities=24% Similarity=0.213 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026388 220 ILAAVIAGCTLFLIIYW 236 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y~ 236 (239)
++|.-+.++++++++|.
T Consensus 15 vlGmg~VflfL~iLi~~ 31 (84)
T COG3630 15 VLGMGFVFLFLSILIYA 31 (84)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555445555554443
No 141
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=22.02 E-value=1.3e+02 Score=19.96 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=2.1
Q ss_pred HHHHHH
Q 026388 222 AAVIAG 227 (239)
Q Consensus 222 ~~vI~~ 227 (239)
|.++|.
T Consensus 18 GLi~A~ 23 (50)
T PF02038_consen 18 GLIFAG 23 (50)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 333333
No 142
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=21.93 E-value=1.2e+02 Score=20.41 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLII 234 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~ 234 (239)
+|++|+|++.+|+..+
T Consensus 33 ~Ii~gii~~~~fV~~L 48 (56)
T PF11174_consen 33 FIIVGIILAALFVAGL 48 (56)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555444444433
No 143
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=21.72 E-value=1.2e+02 Score=19.25 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 026388 220 ILAAVIAGCTLFLIIY 235 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y 235 (239)
|+.+++++.++.+++|
T Consensus 15 ~lVglv~i~iva~~iY 30 (43)
T PF08114_consen 15 CLVGLVGIGIVALFIY 30 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555554
No 144
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=21.70 E-value=77 Score=27.95 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=18.7
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHhc
Q 026388 211 RRRRSRDTLILAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 211 ~~R~~rd~iIl~~vI~~ci~~~l~y~~s 238 (239)
..|.+|.+++.++.+|+|++= .|+||.
T Consensus 219 ~~r~~re~~~y~~~va~~l~n-~w~w~~ 245 (246)
T PF05644_consen 219 KERQQREMILYSITVAFWLLN-SWLWLR 245 (246)
T ss_pred HHHHhHHHHHHHHHHHHHHHH-HHHhhc
Confidence 356777888888777777765 566654
No 145
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.47 E-value=4.8e+02 Score=26.76 Aligned_cols=69 Identities=9% Similarity=0.159 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHhchhhHHhhhhhccCCch-hHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHH
Q 026388 61 KSMEMEIQSLLEKLLDINDAMSRCAASAAPTT-SVTQKLARHRDILHEFTQEFRRIKGNINSMREHAELL 129 (239)
Q Consensus 61 ~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~-s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL 129 (239)
.++....+..-.+-..+-++++..+....+.. ..+..++|..+.|.-...+++.+...+.....+++=.
T Consensus 34 ~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lAe~V 103 (773)
T KOG0412|consen 34 SQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDAIKNTCVLAETV 103 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 33444444444455666777777766533332 3446799999999999999998888877665554443
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.40 E-value=6.1e+02 Score=22.90 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=27.2
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhccCCc
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPT 91 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s 91 (239)
...-.+.|+..-+.+-..++.+++..+...+|+
T Consensus 72 ly~~~c~EL~~~I~egr~~~~~~E~~~~~~nPp 104 (325)
T PF08317_consen 72 LYQFSCRELKKYISEGRQIFEEIEEETYESNPP 104 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 456678999999999999999999888766554
No 147
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=21.11 E-value=2.8e+02 Score=18.85 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHhchhhHHhhhhhcc
Q 026388 60 WKSMEMEIQSLLEKLLDINDAMSRCAASA 88 (239)
Q Consensus 60 ~~~l~~eIe~~L~~l~~li~~m~~~~~~~ 88 (239)
+.....+.+..+.+-..||+++..++.+.
T Consensus 22 ~~~~~~~~~~n~~~K~~Li~~~~~l~~~~ 50 (77)
T PF03993_consen 22 FEEQDAEREENLEKKEALIEEAEALAESE 50 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46677888899999999999999887644
No 148
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=20.80 E-value=1.1e+02 Score=24.26 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026388 219 LILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~ 237 (239)
.++|++++++-+++++|++
T Consensus 83 sllg~~~~v~P~i~~~~~~ 101 (125)
T PF07225_consen 83 SLLGLGFGVVPLIFYYYVL 101 (125)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4455554455444444444
No 149
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.61 E-value=3e+02 Score=19.00 Aligned_cols=46 Identities=9% Similarity=0.181 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhh
Q 026388 63 MEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINS 121 (239)
Q Consensus 63 l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~ 121 (239)
-..++|..|.-.++.|++|+..+ .+....+..+++.++.+...++.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v-------------~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVV-------------TEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888654 33344455555666666555543
No 150
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=20.46 E-value=6.1e+02 Score=26.51 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=24.9
Q ss_pred HHHHHhhhhccCchhHHHHHhhhhhhh--------hhhhcccchhhhccchh
Q 026388 150 QILRERAAIHGSITHIDDVISQAQTTR--------TVLGSQRALFGDVQGKV 193 (239)
Q Consensus 150 ~ll~E~~~L~~S~~~ld~~l~~a~~t~--------~~L~~QR~~l~~~~~rl 193 (239)
.+=.|+++|.....-++.+.+++.++- .-+..+|+.|.+...+.
T Consensus 140 ~v~~eR~~L~~e~~~in~~~~~~e~ls~~~~~~ld~I~~~RReLf~~~l~~~ 191 (835)
T COG3264 140 EVTQERDALQAEKAYINALEGQAEQLTAEVRDILDQILDTRRELLNSLLSQR 191 (835)
T ss_pred HHHHHHHHHhhhHHHHHHHhcchhhhCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344777777777777777777763322 22334555555555444
No 151
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=20.25 E-value=1.3e+02 Score=19.80 Aligned_cols=6 Identities=17% Similarity=-0.285 Sum_probs=2.2
Q ss_pred HHHHhc
Q 026388 233 IIYWLS 238 (239)
Q Consensus 233 l~y~~s 238 (239)
++...+
T Consensus 19 ~I~~~~ 24 (50)
T PF12606_consen 19 SICTTL 24 (50)
T ss_pred HHHHHh
Confidence 333333
No 152
>COG4420 Predicted membrane protein [Function unknown]
Probab=20.13 E-value=78 Score=26.81 Aligned_cols=46 Identities=13% Similarity=-0.051 Sum_probs=22.8
Q ss_pred hhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 026388 175 TRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 175 t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~l~y~~ 237 (239)
+-.+...|.+.=..+.+|+-+-...|+++. +.|+++|++|++|..+
T Consensus 29 i~~~~~e~~~~~~t~gdR~ad~ia~f~Gsw-----------------~fil~~~~~ll~Wi~l 74 (191)
T COG4420 29 ISSDRREEFEDGETFGDRVADKIARFGGSW-----------------AFILTFTLLLLLWIVL 74 (191)
T ss_pred hhcchHHHHhcccchhhhHHHHHHHHcCCh-----------------HHHHHHHHHHHHHHHH
Confidence 334444444444444555555444554443 3344566666666543
No 153
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=20.03 E-value=1.5e+02 Score=20.25 Aligned_cols=15 Identities=13% Similarity=0.459 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026388 222 AAVIAGCTLFLIIYW 236 (239)
Q Consensus 222 ~~vI~~ci~~~l~y~ 236 (239)
..++.+|+.+..|+|
T Consensus 10 vsi~l~~v~l~~flW 24 (58)
T COG3197 10 VSILLGAVGLGAFLW 24 (58)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554444
Done!