Query 026388
Match_columns 239
No_of_seqs 172 out of 502
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 98.7 3.2E-09 1.1E-13 76.7 2.7 70 149-218 12-81 (81)
2 1gl2_C VTI1B, vesicle transpor 98.5 2.1E-08 7.3E-13 69.4 0.7 63 150-212 3-65 (65)
3 1vcs_A Vesicle transport throu 98.3 7.6E-07 2.6E-11 66.9 4.5 59 59-117 35-95 (102)
4 2qyw_A Vesicle transport throu 98.1 3.5E-06 1.2E-10 63.2 5.1 86 10-112 14-101 (102)
5 3onj_A T-snare VTI1; helix, HA 98.0 5.1E-06 1.7E-10 61.8 4.8 57 59-115 31-92 (97)
6 1n7s_C SNAP-25A; neuronal snar 97.5 3.6E-05 1.2E-09 55.1 2.5 62 150-211 17-78 (79)
7 1nhl_A Synaptosomal-associated 96.9 0.0002 6.8E-09 47.4 0.9 52 159-210 3-54 (54)
8 2kog_A Vesicle-associated memb 93.0 0.19 6.6E-06 38.2 5.8 83 153-235 30-116 (119)
9 3hd7_A Vesicle-associated memb 91.9 0.11 3.7E-06 37.7 3.0 79 157-235 6-88 (91)
10 3b5n_C Protein transport prote 91.6 0.066 2.3E-06 37.0 1.5 57 156-212 12-68 (70)
11 1l4a_C S-SNAP25 fusion protein 90.4 0.045 1.6E-06 39.2 -0.2 56 156-211 27-82 (83)
12 2l34_A TYRO protein tyrosine k 87.8 0.58 2E-05 27.5 3.3 21 219-239 12-32 (33)
13 4dnd_A Syntaxin-10, SYN10; str 83.6 1.5 5.1E-05 33.7 4.8 98 11-119 27-128 (130)
14 4b19_A PEPA1; toxin, toxin apo 81.5 0.24 8.3E-06 28.3 -0.3 19 220-238 7-25 (30)
15 4ev6_A Magnesium transport pro 77.7 23 0.00079 30.8 11.2 46 68-121 170-215 (339)
16 3hd7_B Syntaxin-1A; membrane p 65.6 6.5 0.00022 29.0 3.9 47 163-209 28-74 (109)
17 2iub_A CORA, divalent cation t 63.8 40 0.0014 29.5 9.6 44 69-120 195-238 (363)
18 2ks1_B Epidermal growth factor 62.8 6.7 0.00023 24.4 3.0 12 222-233 19-30 (44)
19 2l2t_A Receptor tyrosine-prote 61.0 7.6 0.00026 24.1 3.0 10 224-233 20-29 (44)
20 1n7s_D SNAP-25A; neuronal snar 59.2 24 0.00081 23.2 5.5 58 62-125 3-60 (66)
21 2k1k_A Ephrin type-A receptor 57.8 10 0.00035 22.7 3.1 11 220-230 17-27 (38)
22 1sfc_D Protein (SNAP-25B), pro 54.9 32 0.0011 24.1 5.9 63 60-128 20-82 (87)
23 2lx0_A Membrane fusion protein 53.2 9.7 0.00033 21.2 2.2 18 220-237 8-25 (32)
24 3j1r_A Archaeal adhesion filam 50.4 22 0.00074 19.4 3.2 18 221-238 9-26 (26)
25 2l35_A DAP12-NKG2C_TM; immunor 48.8 17 0.00059 24.2 3.3 21 219-239 12-32 (63)
26 2dnx_A Syntaxin-12; snare, HAB 47.4 69 0.0024 24.0 7.1 33 57-89 9-41 (130)
27 4ioe_A Secreted protein ESXB; 47.0 24 0.00083 24.1 4.2 23 61-83 22-44 (93)
28 3b5n_D Protein transport prote 46.0 51 0.0018 21.7 5.5 59 61-125 2-60 (64)
29 2nps_C Vesicle transport throu 42.4 15 0.00051 25.6 2.4 62 147-208 3-64 (81)
30 1l4a_D S-SNAP25 fusion protein 41.7 61 0.0021 22.7 5.6 60 61-126 22-81 (87)
31 2knc_A Integrin alpha-IIB; tra 40.7 18 0.00061 23.4 2.3 11 220-230 15-25 (54)
32 2l8s_A Integrin alpha-1; trans 39.2 19 0.00067 23.3 2.3 12 219-230 11-22 (54)
33 3gwk_C SAG1039, putative uncha 37.1 98 0.0033 21.1 7.4 60 59-119 19-85 (98)
34 3fav_B ESAT-6, 6 kDa early sec 36.8 96 0.0033 21.0 6.3 26 61-86 18-43 (94)
35 3zbh_A ESXA; unknown function, 36.1 90 0.0031 21.1 5.9 27 60-86 21-47 (99)
36 2k1a_A Integrin alpha-IIB; sin 36.0 25 0.00084 21.5 2.3 11 220-230 13-23 (42)
37 1l4a_D S-SNAP25 fusion protein 35.1 14 0.00048 26.1 1.3 56 156-211 30-85 (87)
38 1sfc_D Protein (SNAP-25B), pro 34.4 15 0.00051 25.8 1.4 63 150-212 22-85 (87)
39 1n7s_D SNAP-25A; neuronal snar 34.1 16 0.00054 24.1 1.4 54 157-210 11-64 (66)
40 1use_A VAsp, vasodilator-stimu 33.6 26 0.00087 21.8 2.1 21 102-122 14-34 (45)
41 1gl2_D Syntaxin 8, vesicle tra 33.3 13 0.00046 24.4 0.9 53 157-209 10-62 (65)
42 2qyw_A Vesicle transport throu 32.5 27 0.00093 25.2 2.5 23 59-81 16-38 (102)
43 2vs0_A Virulence factor ESXA; 31.5 1.2E+02 0.004 20.4 7.4 28 59-86 17-44 (97)
44 2jwa_A Receptor tyrosine-prote 30.0 54 0.0018 20.2 3.2 14 218-231 12-25 (44)
45 2w6b_A RHO guanine nucleotide 29.9 92 0.0031 20.1 4.4 35 94-128 8-43 (56)
46 1gl2_D Syntaxin 8, vesicle tra 29.8 63 0.0022 21.0 3.9 54 66-125 6-59 (65)
47 2klu_A T-cell surface glycopro 29.5 48 0.0016 22.4 3.1 15 219-233 12-26 (70)
48 2c5k_T Syntaxin TLG1, T-snare 28.9 75 0.0026 22.6 4.4 52 63-119 37-91 (95)
49 1vcs_A Vesicle transport throu 28.7 30 0.001 25.0 2.2 21 99-119 70-90 (102)
50 2l9u_A Receptor tyrosine-prote 28.2 65 0.0022 18.9 3.1 18 219-236 12-30 (40)
51 1jdm_A Sarcolipin; helix, memb 27.7 70 0.0024 17.9 3.0 18 217-234 7-24 (31)
52 3oja_A Leucine-rich immune mol 27.5 2.5E+02 0.0086 25.0 8.8 41 147-187 443-483 (487)
53 3onj_A T-snare VTI1; helix, HA 25.8 56 0.0019 23.2 3.2 54 68-121 33-91 (97)
54 3b5n_D Protein transport prote 25.8 24 0.00082 23.4 1.1 52 158-209 12-63 (64)
55 3fav_A ESAT-6-like protein ESX 25.6 78 0.0027 21.9 4.0 58 60-119 12-70 (101)
56 2nps_D Syntaxin-6; vesicle fus 25.5 22 0.00076 24.5 1.0 57 156-212 19-75 (82)
57 2k9p_A Pheromone alpha factor 23.1 61 0.0021 22.5 2.8 22 216-237 20-41 (80)
58 3h6p_C ESAT-6-like protein ESX 22.8 1.8E+02 0.0063 19.7 6.0 60 59-119 17-76 (96)
59 1fjk_A Cardiac phospholamban; 22.8 57 0.002 20.2 2.3 17 219-235 32-48 (52)
60 2xhe_B Syntaxin1; exocytosis, 22.1 1.3E+02 0.0043 25.3 5.3 103 10-119 43-161 (279)
61 2nps_D Syntaxin-6; vesicle fus 21.8 94 0.0032 21.2 3.7 36 96-131 40-75 (82)
62 4i0x_B ESAT-6-like protein MAB 21.4 1.4E+02 0.0048 20.8 4.7 25 60-84 23-47 (103)
63 3vkg_A Dynein heavy chain, cyt 21.1 3.3E+02 0.011 31.4 9.5 33 152-184 2055-2087(3245)
64 3tnu_A Keratin, type I cytoske 20.9 2.1E+02 0.0072 21.2 5.8 69 15-115 42-110 (131)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=98.75 E-value=3.2e-09 Score=76.73 Aligned_cols=70 Identities=10% Similarity=0.099 Sum_probs=64.7
Q ss_pred hHHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhhccccch
Q 026388 149 MQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRRRRSRDT 218 (239)
Q Consensus 149 ~~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~R~~rd~ 218 (239)
+.|-+..++|++|.+.+.++.++|.+|+.+|+.||++|.++++++.+++..+..+..+|+.|.+|..+|+
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 4677888899999999999999999999999999999999999999999999999999999999988775
No 2
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=98.49 E-value=2.1e-08 Score=69.41 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=56.7
Q ss_pred HHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhh
Q 026388 150 QILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRR 212 (239)
Q Consensus 150 ~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~ 212 (239)
+|-+..++|++|.+.+.++.++|.+|+.+|+.||+.|.+++.++.+++..+..+..+|+.|.+
T Consensus 3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 456778899999999999999999999999999999999999999999999999999998864
No 3
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=98.25 E-value=7.6e-07 Score=66.91 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=48.9
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhccCCc--hhHHHHHHhhhhhHHHHHHHHHHhhc
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPT--TSVTQKLARHRDILHEFTQEFRRIKG 117 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s--~s~~~~l~R~re~L~d~~~ef~r~~~ 117 (239)
+.+....+|+..|++++++|++|+.++++.||+ +.+..++..|+..|..++++|++++.
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999988765 35556777788888777777777654
No 4
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=98.09 E-value=3.5e-06 Score=63.23 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=61.4
Q ss_pred hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388 10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA 89 (239)
Q Consensus 10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~ 89 (239)
+.-|+..-.+...|-.+|..+|....... ..++.+....+|+..|++++++|+||+.++++.|
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~-----------------~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTA-----------------GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-----------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45788888999999888888887643221 1136788999999999999999999999999886
Q ss_pred Cc--hhHHHHHHhhhhhHHHHHHHH
Q 026388 90 PT--TSVTQKLARHRDILHEFTQEF 112 (239)
Q Consensus 90 ~s--~s~~~~l~R~re~L~d~~~ef 112 (239)
|+ +.+..++..||..|..+++||
T Consensus 77 ~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 77 LTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 43 233334555555554444444
No 5
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=98.02 E-value=5.1e-06 Score=61.79 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=43.8
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhcc--CCc--hhHHHHHHhhhhhHHH-HHHHHHHh
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASA--APT--TSVTQKLARHRDILHE-FTQEFRRI 115 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~--~~s--~s~~~~l~R~re~L~d-~~~ef~r~ 115 (239)
+.+....+|+..|+++.++|++|+.++++. ||+ +.+..++..|+..|.. ++++|+++
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999988 543 2344456666666666 66666655
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=97.54 E-value=3.6e-05 Score=55.08 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=57.3
Q ss_pred HHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhh
Q 026388 150 QILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIR 211 (239)
Q Consensus 150 ~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~ 211 (239)
.+-+..+++++|.+++.++.+.|.+|+..|+.||+.|.+++.+|.++++.+..+.++++.|.
T Consensus 17 ~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 17 LADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 34466689999999999999999999999999999999999999999999999999998875
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.93 E-value=0.0002 Score=47.40 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=47.1
Q ss_pred ccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhh
Q 026388 159 HGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSI 210 (239)
Q Consensus 159 ~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I 210 (239)
+++.+++.+..+.|..|+..|..||+.|.++.+.|.++++.+....+.++.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 4677889999999999999999999999999999999999998888877643
No 8
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=92.99 E-value=0.19 Score=38.21 Aligned_cols=83 Identities=11% Similarity=0.197 Sum_probs=57.5
Q ss_pred HHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchh----hHHHhhhhhhhccccchHHHHHHHHHH
Q 026388 153 RERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFP----IIRGLLGSIRRRRSRDTLILAAVIAGC 228 (239)
Q Consensus 153 ~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp----~~n~li~~I~~R~~rd~iIl~~vI~~c 228 (239)
.+.++|...+..+|++-++-....+.+-+..+.|....+|-.++...-- ..+.+-+++-.+..+=.+|++++++++
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999988888877776655332 444555555555555555666555444
Q ss_pred HHHHHHH
Q 026388 229 TLFLIIY 235 (239)
Q Consensus 229 i~~~l~y 235 (239)
+++++++
T Consensus 110 i~iIi~~ 116 (119)
T 2kog_A 110 LIIIIVY 116 (119)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 4444433
No 9
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=91.86 E-value=0.11 Score=37.67 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=39.9
Q ss_pred hhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhccc---chh-hHHHhhhhhhhccccchHHHHHHHHHHHHHH
Q 026388 157 AIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSD---KFP-IIRGLLGSIRRRRSRDTLILAAVIAGCTLFL 232 (239)
Q Consensus 157 ~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~---~lp-~~n~li~~I~~R~~rd~iIl~~vI~~ci~~~ 232 (239)
+|...+..+|++-++-....+.+-...+.|....+|-.++.+ .|- ....+=+++-.+..+=.+|+++|++++++++
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555544444444333332 332 4445555566666555667766654444443
Q ss_pred HHH
Q 026388 233 IIY 235 (239)
Q Consensus 233 l~y 235 (239)
++|
T Consensus 86 ~~~ 88 (91)
T 3hd7_A 86 IVY 88 (91)
T ss_dssp HHT
T ss_pred HHH
Confidence 333
No 10
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=91.61 E-value=0.066 Score=37.04 Aligned_cols=57 Identities=14% Similarity=0.292 Sum_probs=49.6
Q ss_pred hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhh
Q 026388 156 AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRR 212 (239)
Q Consensus 156 ~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~ 212 (239)
++-+++-+++.+....|..|+..|..|.+.|.++...|-.+...+.....-+..|+.
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455677788999999999999999999999999999999999988888777776653
No 11
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=90.43 E-value=0.045 Score=39.16 Aligned_cols=56 Identities=7% Similarity=0.100 Sum_probs=47.1
Q ss_pred hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhh
Q 026388 156 AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIR 211 (239)
Q Consensus 156 ~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~ 211 (239)
++.+++-+++.+....|..|+..|..|++.|.++...|-.+.+.+......+..|+
T Consensus 27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45577778888999999999999999999999999999999998887777666553
No 12
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=87.79 E-value=0.58 Score=27.46 Aligned_cols=21 Identities=14% Similarity=0.548 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 026388 219 LILAAVIAGCTLFLIIYWLSK 239 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~sK 239 (239)
+|+|.++++.++.+++|+|+|
T Consensus 12 IVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 12 IVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred EeHHHHHHHHHHHHHHhheec
Confidence 567888888888888888876
No 13
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=83.56 E-value=1.5 Score=33.71 Aligned_cols=98 Identities=10% Similarity=0.111 Sum_probs=58.6
Q ss_pred hcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhc--c
Q 026388 11 SGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAAS--A 88 (239)
Q Consensus 11 ~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~--~ 88 (239)
-.|-.++.++..-=+.++..+.+|..+... ++.++..++..+..|+...|+.++.-++.++.-+.- .
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~-----------~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~ 95 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQE-----------SAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEA 95 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666655555555666666655321 111123467788888888888888888888866551 1
Q ss_pred CCch-hH-HHHHHhhhhhHHHHHHHHHHhhcch
Q 026388 89 APTT-SV-TQKLARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 89 ~~s~-s~-~~~l~R~re~L~d~~~ef~r~~~~i 119 (239)
.|.. .. ...+.+.|..+.+.+.+...++..+
T Consensus 96 np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 96 NPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1210 00 1348888888888888888877644
No 14
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=81.50 E-value=0.24 Score=28.33 Aligned_cols=19 Identities=53% Similarity=1.167 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026388 220 ILAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y~~s 238 (239)
|++-||+.|++-+|-||++
T Consensus 7 iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 7 IIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp STTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999985
No 15
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=77.73 E-value=23 Score=30.79 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhh
Q 026388 68 QSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINS 121 (239)
Q Consensus 68 e~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~ 121 (239)
...++++++-++.++..+-..+ ..... ..+.+++++.-.++..+..
T Consensus 170 ~~~l~~l~~~i~~lE~~l~~~~-~~~~l-------~~l~~lrr~l~~lrr~l~~ 215 (339)
T 4ev6_A 170 SRILMNLEDELEELEDKLLAGY-DREVM-------EKILGLRKTLVYFHKSLIA 215 (339)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCC-CHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhh-hhhHH-------HHHHHHHHHHHHHHHHhhh
Confidence 3344445555555554443222 22222 2244455555555544433
No 16
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=65.61 E-value=6.5 Score=28.97 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=31.9
Q ss_pred hhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhh
Q 026388 163 THIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGS 209 (239)
Q Consensus 163 ~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~ 209 (239)
+.+-++-++-...-.-...|.+.+.++...+.++...+...+.=+.+
T Consensus 28 ~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~k 74 (109)
T 3hd7_B 28 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555556789999999999999888888665555544
No 17
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=63.79 E-value=40 Score=29.55 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=20.3
Q ss_pred HHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchh
Q 026388 69 SLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120 (239)
Q Consensus 69 ~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~ 120 (239)
..++++++-++.++..+-..+ .... ...+.+++++.-+++..+.
T Consensus 195 ~~l~~l~~~id~lE~~v~~~~-~~~~-------l~~l~~lrr~l~~lrr~l~ 238 (363)
T 2iub_A 195 VLLEKIDDEIDVLEEEVLERP-EKET-------VQRTHQLKRNLVELRKTIW 238 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTSSC-CHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC-ChHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544332 2211 2234555555555555443
No 18
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=62.76 E-value=6.7 Score=24.35 Aligned_cols=12 Identities=17% Similarity=-0.014 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 026388 222 AAVIAGCTLFLI 233 (239)
Q Consensus 222 ~~vI~~ci~~~l 233 (239)
|++.++++++++
T Consensus 19 gGv~~~~ii~~~ 30 (44)
T 2ks1_B 19 GALLLLLVVALG 30 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 434444444443
No 19
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=60.99 E-value=7.6 Score=24.13 Aligned_cols=10 Identities=10% Similarity=-0.097 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 026388 224 VIAGCTLFLI 233 (239)
Q Consensus 224 vI~~ci~~~l 233 (239)
+.++++++++
T Consensus 20 v~~v~ii~~~ 29 (44)
T 2l2t_A 20 LFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 20
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=59.22 E-value=24 Score=23.23 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHH
Q 026388 62 SMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREH 125 (239)
Q Consensus 62 ~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR 125 (239)
.++.+++..|+.+...+..+...+-.. -..+..+...|.++...+.+....+.....|
T Consensus 3 ~~e~eqD~~Ld~L~~~v~~lk~la~~i------g~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~r 60 (66)
T 1n7s_D 3 ARENEMDENLEQVSGIIGNLRHMALDM------GNEIDTQNRQIDRIMEKADSNKTRIDEANQR 60 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 477888999999999888887764322 2458888888999999998888877666555
No 21
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=57.80 E-value=10 Score=22.68 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 026388 220 ILAAVIAGCTL 230 (239)
Q Consensus 220 Il~~vI~~ci~ 230 (239)
++|.|++++++
T Consensus 17 VvG~v~gv~li 27 (38)
T 2k1k_A 17 IFGLLLGAALL 27 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred ehHHHHHHHHH
Confidence 33444444433
No 22
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=54.89 E-value=32 Score=24.06 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=50.2
Q ss_pred chhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHH
Q 026388 60 WKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHAEL 128 (239)
Q Consensus 60 ~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~L 128 (239)
-+.++.+++..|+++...+..+...+-. +-..+..+...|.++..++.++...+.....|..-
T Consensus 20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~------ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 20 NDARENEMDENLEQVSGIIGNLRHMALD------MGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3778899999999999999988876432 23568889999999999999988888776666443
No 23
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=53.23 E-value=9.7 Score=21.23 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026388 220 ILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 220 Il~~vI~~ci~~~l~y~~ 237 (239)
+++|+++.+.|+-+-||+
T Consensus 8 viaglvalltflafgfwl 25 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566777776665554
No 24
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=50.43 E-value=22 Score=19.39 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026388 221 LAAVIAGCTLFLIIYWLS 238 (239)
Q Consensus 221 l~~vI~~ci~~~l~y~~s 238 (239)
|-.+|++.--+++|.||+
T Consensus 9 lLIviav~aaVllylW~s 26 (26)
T 3j1r_A 9 LLILIAVAAAVLLYTWVS 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 334455555566777765
No 25
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=48.79 E-value=17 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.548 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 026388 219 LILAAVIAGCTLFLIIYWLSK 239 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y~~sK 239 (239)
+|++-++++.++.+..|+|+|
T Consensus 12 IIv~DIi~TllLal~VY~~A~ 32 (63)
T 2l35_A 12 IVVGDLVLTVLIALAVYFLGR 32 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhhcc
Confidence 577778888888888887775
No 26
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.43 E-value=69 Score=23.97 Aligned_cols=33 Identities=6% Similarity=0.115 Sum_probs=29.1
Q ss_pred CCcchhhHHHHHHHHHHHhchhhHHhhhhhccC
Q 026388 57 GRSWKSMEMEIQSLLEKLLDINDAMSRCAASAA 89 (239)
Q Consensus 57 ~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~ 89 (239)
..+|..+...|...|.++...+.+|...+...+
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LG 41 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLG 41 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 347999999999999999999999999887654
No 27
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=47.02 E-value=24 Score=24.06 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHhchhhHHhh
Q 026388 61 KSMEMEIQSLLEKLLDINDAMSR 83 (239)
Q Consensus 61 ~~l~~eIe~~L~~l~~li~~m~~ 83 (239)
.....+|+..+..|...++.|..
T Consensus 22 ~~~~~~i~~~l~~L~~~~~~L~~ 44 (93)
T 4ioe_A 22 KNAAGEAQSQINRLEGDINSLEG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555543
No 28
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=46.03 E-value=51 Score=21.73 Aligned_cols=59 Identities=15% Similarity=0.317 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHH
Q 026388 61 KSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREH 125 (239)
Q Consensus 61 ~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR 125 (239)
+.++.|++.-|+++..++..+...+-. +-..+..+.+.|......-.+....+..+..|
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~------mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~R 60 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALT------TGKELDSQQKRLNNIEESTDDLDINLHMNTNR 60 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999888876432 22456666666776666555555555444333
No 29
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=42.35 E-value=15 Score=25.57 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=36.0
Q ss_pred hhhHHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhh
Q 026388 147 PRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLG 208 (239)
Q Consensus 147 ~~~~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~ 208 (239)
++++||...++|+++...+.+...++.+|.+==..==+-|..-+..|..+-.++-.++.-+.
T Consensus 3 qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~ 64 (81)
T 2nps_C 3 MRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLG 64 (81)
T ss_dssp TTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHH
Confidence 46677888888888888888888777776531111112344445555555555544444443
No 30
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=41.66 E-value=61 Score=22.66 Aligned_cols=60 Identities=8% Similarity=0.177 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHHH
Q 026388 61 KSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREHA 126 (239)
Q Consensus 61 ~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~ 126 (239)
+..+.+++..|+++...+..+...+... -..+.++.+.|.++.....++...+...-.|.
T Consensus 22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~m------g~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 22 DAREDDMENNMKEVSSMIGNLRNMAIDM------GNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999998775432 35688899999999988888877776654443
No 31
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.73 E-value=18 Score=23.44 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 026388 220 ILAAVIAGCTL 230 (239)
Q Consensus 220 Il~~vI~~ci~ 230 (239)
|+.+|++.+++
T Consensus 15 Ii~svl~GLll 25 (54)
T 2knc_A 15 VLVGVLGGLLL 25 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 32
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=39.19 E-value=19 Score=23.25 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTL 230 (239)
Q Consensus 219 iIl~~vI~~ci~ 230 (239)
+|+.++++.+++
T Consensus 11 iIi~svl~GLLL 22 (54)
T 2l8s_A 11 VILLSAFAGLLL 22 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 33
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=37.14 E-value=98 Score=21.11 Aligned_cols=60 Identities=12% Similarity=0.231 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHH-------HHHHhhhhhHHHHHHHHHHhhcch
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVT-------QKLARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~-------~~l~R~re~L~d~~~ef~r~~~~i 119 (239)
.+.....+|+..|..|...++.|...+.... +.+.. ..+.++.+.|.++...++++-..+
T Consensus 19 ~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a-~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~ 85 (98)
T 3gwk_C 19 KYTAGSQQVTEVLNLLTQEQAVIDENWDGST-FDSFEAQFNELSPKITEFAQLLEDINQQLLKVADII 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBCSST-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888888888888877665332 22211 234444444444444444444433
No 34
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=36.85 E-value=96 Score=20.95 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHhchhhHHhhhhh
Q 026388 61 KSMEMEIQSLLEKLLDINDAMSRCAA 86 (239)
Q Consensus 61 ~~l~~eIe~~L~~l~~li~~m~~~~~ 86 (239)
.....+|+..|+++...++.|.....
T Consensus 18 ~~~~~~i~~~l~~l~~~v~~l~~~W~ 43 (94)
T 3fav_B 18 QGNVTSIHSLLDEGKQSLTKLAAAWG 43 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 44445555555555555555554443
No 35
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=36.14 E-value=90 Score=21.13 Aligned_cols=27 Identities=7% Similarity=0.212 Sum_probs=17.0
Q ss_pred chhhHHHHHHHHHHHhchhhHHhhhhh
Q 026388 60 WKSMEMEIQSLLEKLLDINDAMSRCAA 86 (239)
Q Consensus 60 ~~~l~~eIe~~L~~l~~li~~m~~~~~ 86 (239)
+.....+|+..+..+...++.|...+.
T Consensus 21 ~~~~~~~i~~~l~~L~~~v~~L~~~W~ 47 (99)
T 3zbh_A 21 YNVESSNVTELIARLDQMSHTLQGIWE 47 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455556677777777777776665443
No 36
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=35.96 E-value=25 Score=21.51 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 026388 220 ILAAVIAGCTL 230 (239)
Q Consensus 220 Il~~vI~~ci~ 230 (239)
|+.++++.+++
T Consensus 13 Ii~s~l~GLll 23 (42)
T 2k1a_A 13 VLVGVLGGLLL 23 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 37
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=35.09 E-value=14 Score=26.06 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=47.7
Q ss_pred hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhh
Q 026388 156 AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIR 211 (239)
Q Consensus 156 ~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~ 211 (239)
+.|+.=...+..+=.+|..+-.+|..|...|..+..++-.+..++...+.=+.++-
T Consensus 30 ~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll 85 (87)
T 1l4a_D 30 NNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85 (87)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677888888999999999999999999999999999999988777666553
No 38
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.41 E-value=15 Score=25.82 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=50.5
Q ss_pred HHHHHh-hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhh
Q 026388 150 QILRER-AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRR 212 (239)
Q Consensus 150 ~ll~E~-~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~ 212 (239)
.+.+|. +.|+.=...+..+=.+|..+-.+|..|...|..+..++-.+..++...+.=+.++.+
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 344433 456777778888888999999999999999999999999999888877776666554
No 39
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=34.07 E-value=16 Score=24.12 Aligned_cols=54 Identities=7% Similarity=0.016 Sum_probs=42.1
Q ss_pred hhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhh
Q 026388 157 AIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSI 210 (239)
Q Consensus 157 ~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I 210 (239)
.|+.=...+..+=.+|..+-.+|..|...|..+..++-.+..++...+.=+.++
T Consensus 11 ~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 11 NLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344445666777788999999999999999999999988888887766555443
No 40
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=33.57 E-value=26 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHhhcchhhH
Q 026388 102 RDILHEFTQEFRRIKGNINSM 122 (239)
Q Consensus 102 re~L~d~~~ef~r~~~~i~~~ 122 (239)
+++|.++++|+++.|..|-.+
T Consensus 14 qEIL~E~RkElqK~K~EIIeA 34 (45)
T 1use_A 14 QELLEEVKKELQKVKEEIIEA 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888999998888876443
No 41
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=33.31 E-value=13 Score=24.40 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=40.5
Q ss_pred hhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhh
Q 026388 157 AIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGS 209 (239)
Q Consensus 157 ~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~ 209 (239)
.|+.=+..+..+=.+|..+-+++..|...|..+..++-.+..++...+.=+.+
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777788899999999999999999998888887777665554443
No 42
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=32.47 E-value=27 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=13.1
Q ss_pred cchhhHHHHHHHHHHHhchhhHH
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAM 81 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m 81 (239)
.|+..+.+-..+..++...++++
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~i 38 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPERL 38 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666655555555555543
No 43
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=31.53 E-value=1.2e+02 Score=20.38 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=19.3
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhh
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAA 86 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~ 86 (239)
.+.....+|+..+..+...++.|...+.
T Consensus 17 ~~~~~~~~l~~~l~~L~~~~~~L~~~W~ 44 (97)
T 2vs0_A 17 SYGQGSDQIRQILSDLTRAQGEIAANWE 44 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3455667777777777777777766554
No 44
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.98 E-value=54 Score=20.22 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHH
Q 026388 218 TLILAAVIAGCTLF 231 (239)
Q Consensus 218 ~iIl~~vI~~ci~~ 231 (239)
..|.++|+++++++
T Consensus 12 ~~Ia~~vVGvll~v 25 (44)
T 2jwa_A 12 TSIISAVVGILLVV 25 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 45666666644443
No 45
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.90 E-value=92 Score=20.05 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhH-HHHHHH
Q 026388 94 VTQKLARHRDILHEFTQEFRRIKGNINSM-REHAEL 128 (239)
Q Consensus 94 ~~~~l~R~re~L~d~~~ef~r~~~~i~~~-~eR~~L 128 (239)
...++=-.++.++++++|+++++..+.++ +.|-.|
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~L 43 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDL 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667888999999999999887553 345444
No 46
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.79 E-value=63 Score=20.96 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=32.8
Q ss_pred HHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcchhhHHHH
Q 026388 66 EIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNINSMREH 125 (239)
Q Consensus 66 eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i~~~~eR 125 (239)
+.+..|+.+...+..+...+.. .-..+..+...|.++..+|.++...+.....|
T Consensus 6 eqD~~Ld~L~~~v~~lk~~a~~------Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~r 59 (65)
T 1gl2_D 6 EQDAGLDALSSIISRQKQMGQE------IGNELDEQNEIIDDLANLVENTDEKLRTEARR 59 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544221 22457778888888888888888777665555
No 47
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=29.47 E-value=48 Score=22.35 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLI 233 (239)
Q Consensus 219 iIl~~vI~~ci~~~l 233 (239)
+++|+++++++|+-+
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 356777666555433
No 48
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=28.91 E-value=75 Score=22.63 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhchhhHHhhhhh---ccCCchhHHHHHHhhhhhHHHHHHHHHHhhcch
Q 026388 63 MEMEIQSLLEKLLDINDAMSRCAA---SAAPTTSVTQKLARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 63 l~~eIe~~L~~l~~li~~m~~~~~---~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i 119 (239)
...|++..++.+++.++.|..-+. +.+|.. +++=+..+.+++.++..++..+
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~E-----I~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIVMKRDENED-----VSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444444443222 112221 4444555666666666666554
No 49
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.74 E-value=30 Score=24.96 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=9.7
Q ss_pred HhhhhhHHHHHHHHHHhhcch
Q 026388 99 ARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 99 ~R~re~L~d~~~ef~r~~~~i 119 (239)
..|...|.+|++++.+++..+
T Consensus 70 ~~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 70 GMYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444554444444433
No 50
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=28.16 E-value=65 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH-HHHHH
Q 026388 219 LILAAVIAGCTLF-LIIYW 236 (239)
Q Consensus 219 iIl~~vI~~ci~~-~l~y~ 236 (239)
+|.|.++.++++- .|+||
T Consensus 12 ~i~gl~vif~~lg~tflyw 30 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEE
Confidence 3444444333332 25565
No 51
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.66 E-value=70 Score=17.90 Aligned_cols=18 Identities=0% Similarity=0.189 Sum_probs=9.7
Q ss_pred chHHHHHHHHHHHHHHHH
Q 026388 217 DTLILAAVIAGCTLFLII 234 (239)
Q Consensus 217 d~iIl~~vI~~ci~~~l~ 234 (239)
.-++=..+|.+|++++++
T Consensus 7 ELf~NFt~vLI~vlLi~l 24 (31)
T 1jdm_A 7 ELFLNFTIVLITVILMWL 24 (31)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445566666666544
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.52 E-value=2.5e+02 Score=25.05 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=35.1
Q ss_pred hhhHHHHHhhhhccCchhHHHHHhhhhhhhhhhhcccchhh
Q 026388 147 PRMQILRERAAIHGSITHIDDVISQAQTTRTVLGSQRALFG 187 (239)
Q Consensus 147 ~~~~ll~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~ 187 (239)
+.+.+.+|.++++.=...+|..+.-|.+++.++..|...|.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999988877664
No 53
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.84 E-value=56 Score=23.24 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHHHHHHhchhhHHhhhhhccCC--chh--HHHHHHhhhhhHHHHHHHHHH-hhcchhh
Q 026388 68 QSLLEKLLDINDAMSRCAASAAP--TTS--VTQKLARHRDILHEFTQEFRR-IKGNINS 121 (239)
Q Consensus 68 e~~L~~l~~li~~m~~~~~~~~~--s~s--~~~~l~R~re~L~d~~~ef~r-~~~~i~~ 121 (239)
...+.+++.-++....++..+.. ... -......|...|.+|++++.+ ++..++.
T Consensus 33 k~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 33 NTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666554421 111 124566777777888888777 7776643
No 54
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=25.77 E-value=24 Score=23.41 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=39.6
Q ss_pred hccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhh
Q 026388 158 IHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGS 209 (239)
Q Consensus 158 L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~ 209 (239)
|..-..++-.+=.+|.++-.++-.|...|.++..|.-.+..++..-+.=+.+
T Consensus 12 Ld~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 12 LDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344456666677889999999999999999999988888877665554444
No 55
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=25.64 E-value=78 Score=21.92 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=30.8
Q ss_pred chhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHH-HHHHhhhhhHHHHHHHHHHhhcch
Q 026388 60 WKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVT-QKLARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 60 ~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~-~~l~R~re~L~d~~~ef~r~~~~i 119 (239)
......+|+..-.+++.++++|...+...... +. .--..|.....++...+.++...+
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~--W~G~A~~af~~~~~~w~~~~~~l~~~L 70 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQ--WRGAAGTAAQAAVVRFQEAANKQKQEL 70 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666655443211 00 012346666666666665555444
No 56
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=25.48 E-value=22 Score=24.53 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=46.7
Q ss_pred hhhccCchhHHHHHhhhhhhhhhhhcccchhhhccchhhhcccchhhHHHhhhhhhh
Q 026388 156 AAIHGSITHIDDVISQAQTTRTVLGSQRALFGDVQGKVKVLSDKFPIIRGLLGSIRR 212 (239)
Q Consensus 156 ~~L~~S~~~ld~~l~~a~~t~~~L~~QR~~l~~~~~rl~~~~~~lp~~n~li~~I~~ 212 (239)
+.|+.=+..+..+=.+|..+-++|..|...|..+...+-.+..++...+.=+.++.+
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888888999999999999999999999999988888766665555544
No 57
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=23.13 E-value=61 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.555 Sum_probs=15.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q 026388 216 RDTLILAAVIAGCTLFLIIYWL 237 (239)
Q Consensus 216 rd~iIl~~vI~~ci~~~l~y~~ 237 (239)
|..++.|.=||.|+++++..|+
T Consensus 20 ~~~I~~G~~iGAs~llliil~l 41 (80)
T 2k9p_A 20 TQAILFGVRSGAAALTLIVVWI 41 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888887755554
No 58
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=22.78 E-value=1.8e+02 Score=19.68 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=32.5
Q ss_pred cchhhHHHHHHHHHHHhchhhHHhhhhhccCCchhHHHHHHhhhhhHHHHHHHHHHhhcch
Q 026388 59 SWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 59 ~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~~~~l~R~re~L~d~~~ef~r~~~~i 119 (239)
+......+|+..|+++...+..|........ +.+....-.++..-..++..-+..+...+
T Consensus 17 ~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A-~~ay~~~~~~W~~~~~~l~~~L~~i~~~l 76 (96)
T 3h6p_C 17 DMAGYAGTLQSLGADIASEQAVLSSAWQGDT-GITYQGWQTQWNQALEDLVRAYQSMSGTH 76 (96)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTGGGCCTTS-SSCHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888776665433 33333334444444444444444444433
No 59
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=22.75 E-value=57 Score=20.23 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026388 219 LILAAVIAGCTLFLIIY 235 (239)
Q Consensus 219 iIl~~vI~~ci~~~l~y 235 (239)
++=.+.|.+|++++.+.
T Consensus 32 fvnfclilicllli~ii 48 (52)
T 1fjk_A 32 FINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33356666666665444
No 60
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=22.06 E-value=1.3e+02 Score=25.27 Aligned_cols=103 Identities=9% Similarity=0.041 Sum_probs=57.0
Q ss_pred hhcHHHHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCC----CCCcchhhHHHHHHHHHHHhchhhHHhhhh
Q 026388 10 ESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVG----SGRSWKSMEMEIQSLLEKLLDINDAMSRCA 85 (239)
Q Consensus 10 ~~~w~~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~eIe~~L~~l~~li~~m~~~~ 85 (239)
...|-..=......=..|..++..+.++....- +.|... ...+.+.+..+|..++..+...+..|...+
T Consensus 43 ~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l-------~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~ 115 (279)
T 2xhe_B 43 MADFFNRVKRIRDNIEDIEQAIEQVAQLHTESL-------VAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKEN 115 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777777777777753210 111111 112345566667777777777787777655
Q ss_pred hcc--------C-Cc---hhHHHHHHhhhhhHHHHHHHHHHhhcch
Q 026388 86 ASA--------A-PT---TSVTQKLARHRDILHEFTQEFRRIKGNI 119 (239)
Q Consensus 86 ~~~--------~-~s---~s~~~~l~R~re~L~d~~~ef~r~~~~i 119 (239)
... + ++ .....+.......|.+.-.+|+.+....
T Consensus 116 ~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y 161 (279)
T 2xhe_B 116 KRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAEN 161 (279)
T ss_dssp HTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1 11 1122245555556666666666665544
No 61
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=21.82 E-value=94 Score=21.21 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=28.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcchhhHHHHHHHHHh
Q 026388 96 QKLARHRDILHEFTQEFRRIKGNINSMREHAELLSS 131 (239)
Q Consensus 96 ~~l~R~re~L~d~~~ef~r~~~~i~~~~eR~~LL~~ 131 (239)
..+..+...|.++..+|.++...+.....|..-|..
T Consensus 40 ~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 40 GELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999888887777665543
No 62
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.41 E-value=1.4e+02 Score=20.82 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHHHhchhhHHhhh
Q 026388 60 WKSMEMEIQSLLEKLLDINDAMSRC 84 (239)
Q Consensus 60 ~~~l~~eIe~~L~~l~~li~~m~~~ 84 (239)
......+|+..|+++...++.|...
T Consensus 23 ~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 23 ARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566666666666666666655
No 63
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.06 E-value=3.3e+02 Score=31.41 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=13.6
Q ss_pred HHHhhhhccCchhHHHHHhhhhhhhhhhhcccc
Q 026388 152 LRERAAIHGSITHIDDVISQAQTTRTVLGSQRA 184 (239)
Q Consensus 152 l~E~~~L~~S~~~ld~~l~~a~~t~~~L~~QR~ 184 (239)
..|.+.|+.--.....-+..|....+.|..-+.
T Consensus 2055 ~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2055 IRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 344444443333344444444444444444333
No 64
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.95 E-value=2.1e+02 Score=21.17 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccccccchhhhhhhhhhccCCcccCCCCCCCCCCcchhhHHHHHHHHHHHhchhhHHhhhhhccCCchhH
Q 026388 15 ELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDAMSRCAASAAPTTSV 94 (239)
Q Consensus 15 ~lr~~ar~LE~~id~kL~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eIe~~L~~l~~li~~m~~~~~~~~~s~s~ 94 (239)
++|++...|+.+|++..+.-..+...+ ..++..-+..+..++..+..++..
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l-------------------~e~e~~~~~~l~~~q~~i~~lE~e---------- 92 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSL-------------------EETKGRYCMQLAQIQEMIGSVEEQ---------- 92 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred HHHHHhhhhhHHHHHHHHHHh
Q 026388 95 TQKLARHRDILHEFTQEFRRI 115 (239)
Q Consensus 95 ~~~l~R~re~L~d~~~ef~r~ 115 (239)
+++-|..+....+||+.+
T Consensus 93 ---L~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 93 ---LAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHH
Done!