BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026389
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
Q N++ + D L V EG T LA+ V+G L + G +YF+ ST +
Sbjct: 81 QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 140
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236
+ + G+L+KYDPS ET++LL L G +S D +++V E
Sbjct: 141 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 194
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
Q N++ + D L V EG T LA+ V+G L + G +YF+ ST +
Sbjct: 90 QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236
+ + G+L+KYDPS ET++LL L G +S D +++V E
Sbjct: 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 203
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
Q N+ + D L V EG T LA+ V+G L + G +YF+ ST +
Sbjct: 90 QNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236
+ G+L KYDPS ET++L L G +S D +++V E
Sbjct: 150 DDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAE 203
>pdb|3DR2|A Chain A, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
pdb|3DR2|B Chain B, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
Length = 305
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH--NWGLDLLEAKPHGKLLKYDPS 206
+L G R+N +DLI A DG+I+F+ FGL + G H + + P
Sbjct: 120 LLVGRYAGKRLNSPNDLIVARDGAIWFT--DPPFGLRKPSQGCPADPELAHHSVYRLPPD 177
Query: 207 LNETSILLDSLFFANGVALSKDEDYLVVCET 237
+ + D L NG+A S DE L V +T
Sbjct: 178 GSPLQRMAD-LDHPNGLAFSPDEQTLYVSQT 207
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
G+ TE G + + S DD++ + G YF T F ++ P
Sbjct: 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF----TDFRGYS-------TNPL 161
Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
G + P + ++ ++ ANG+ALS DE L V ET
Sbjct: 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 160 NLADDLIAATDGSIYFSVASTKFG--LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL 217
+L + + +D Y V KFG + LD+LE PH +L+ N+T++L +
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV 240
Query: 218 FF 219
F
Sbjct: 241 EF 242
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 160 NLADDLIAATDGSIYFSVASTKFG--LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL 217
+L + + +D Y V KFG + LD+LE PH +L+ N+T++L +
Sbjct: 73 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV 132
Query: 218 FF 219
F
Sbjct: 133 EF 134
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
G+ TE G + + S DD + + G YF T F ++ P
Sbjct: 113 GIFAATENGDNLQDIIEDLSTAYCIDDXVFDSKGGFYF----TDFRGYS-------TNPL 161
Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
G + P + ++ ++ ANG+ALS DE L V ET
Sbjct: 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
G+ TE G + + S +D++ + G YF T F ++ P
Sbjct: 113 GIFAATENGDNLQDIIEDLSTAYCINDMVFDSKGGFYF----TDFRGYS-------TNPL 161
Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
G + P + ++ ++ ANG+ALS DE L V ET
Sbjct: 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 164 DLIAATDGSIYFSVASTKFGL--HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219
D + +D Y + ++G H + LD++E PH +L+ N+T L ++ F
Sbjct: 79 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 136
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 164 DLIAATDGSIYFSVASTKFGL--HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219
D + +D Y + ++G H + LD++E PH +L+ N+T L ++ F
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 135
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 164 DLIAATDGSIYFSVASTKFGL--HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219
D + +D Y + ++G H + LD++E PH +L+ N+T L ++ F
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEF 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,925,096
Number of Sequences: 62578
Number of extensions: 210251
Number of successful extensions: 566
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 17
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)