Query 026389
Match_columns 239
No_of_seqs 252 out of 1559
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 8.4E-33 1.8E-37 239.0 17.1 187 51-239 39-240 (376)
2 PF08450 SGL: SMP-30/Gluconola 99.9 4.8E-22 1E-26 167.5 16.5 148 79-239 2-155 (246)
3 COG3386 Gluconolactonase [Carb 99.9 2E-21 4.3E-26 168.3 17.6 154 78-238 26-183 (307)
4 PF03088 Str_synth: Strictosid 99.9 8.5E-23 1.8E-27 144.7 5.8 77 163-239 1-78 (89)
5 TIGR02604 Piru_Ver_Nterm putat 99.7 3.3E-16 7.1E-21 139.7 19.3 166 68-237 4-202 (367)
6 PF08450 SGL: SMP-30/Gluconola 99.7 4.3E-16 9.4E-21 131.2 17.7 143 75-237 84-245 (246)
7 PLN02919 haloacid dehalogenase 99.6 6.5E-14 1.4E-18 139.2 19.0 146 75-238 566-760 (1057)
8 PLN02919 haloacid dehalogenase 99.5 6.1E-13 1.3E-17 132.4 19.3 144 76-238 682-878 (1057)
9 COG3386 Gluconolactonase [Carb 99.5 2.1E-12 4.5E-17 112.2 17.3 142 76-238 110-276 (307)
10 COG4257 Vgb Streptogramin lyas 99.5 1.6E-12 3.5E-17 108.6 14.8 147 69-236 54-206 (353)
11 PF07995 GSDH: Glucose / Sorbo 99.2 4.5E-10 9.8E-15 98.9 13.4 157 77-238 2-201 (331)
12 TIGR03606 non_repeat_PQQ dehyd 99.2 6.1E-09 1.3E-13 94.6 20.8 169 67-238 21-249 (454)
13 PRK11028 6-phosphogluconolacto 99.1 5.9E-09 1.3E-13 91.3 18.2 152 64-237 24-194 (330)
14 COG4257 Vgb Streptogramin lyas 99.1 4.8E-09 1.1E-13 88.0 14.5 151 69-238 181-337 (353)
15 COG3391 Uncharacterized conser 99.0 2.6E-08 5.7E-13 89.4 19.1 144 77-237 116-272 (381)
16 PRK11028 6-phosphogluconolacto 99.0 2E-08 4.4E-13 88.0 17.4 143 77-237 80-247 (330)
17 COG3391 Uncharacterized conser 99.0 4.2E-08 9.2E-13 88.1 18.1 141 77-238 74-227 (381)
18 PF10282 Lactonase: Lactonase, 99.0 3E-08 6.6E-13 87.8 16.9 144 76-237 143-311 (345)
19 KOG4659 Uncharacterized conser 99.0 1.4E-08 2.9E-13 99.1 14.8 135 81-238 411-612 (1899)
20 PF10282 Lactonase: Lactonase, 98.9 1.6E-07 3.6E-12 83.1 18.7 153 64-236 26-210 (345)
21 KOG4499 Ca2+-binding protein R 98.8 2.3E-07 5E-12 76.4 14.7 136 83-236 115-273 (310)
22 COG2133 Glucose/sorbosone dehy 98.8 2.6E-07 5.5E-12 82.5 15.7 168 67-239 58-260 (399)
23 KOG4659 Uncharacterized conser 98.8 1.9E-07 4.2E-12 91.3 15.5 155 75-238 473-681 (1899)
24 KOG1214 Nidogen and related ba 98.8 9.1E-08 2E-12 90.1 12.3 142 77-238 1025-1176(1289)
25 TIGR02604 Piru_Ver_Nterm putat 98.7 3.2E-07 7E-12 82.0 14.0 104 67-179 63-203 (367)
26 KOG1520 Predicted alkaloid syn 98.7 2.8E-07 6.1E-12 80.8 12.6 136 76-235 114-281 (376)
27 PF01731 Arylesterase: Arylest 98.7 9.7E-08 2.1E-12 67.3 7.3 73 163-239 1-75 (86)
28 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 4.1E-06 8.9E-11 70.9 18.8 138 77-235 31-174 (300)
29 TIGR03866 PQQ_ABC_repeats PQQ- 98.6 4.5E-06 9.7E-11 70.7 18.1 125 88-236 1-133 (300)
30 KOG1214 Nidogen and related ba 98.6 7.4E-07 1.6E-11 84.2 12.7 145 70-238 1061-1216(1289)
31 KOG4499 Ca2+-binding protein R 98.6 7.6E-07 1.7E-11 73.4 11.0 149 80-238 18-178 (310)
32 PF05096 Glu_cyclase_2: Glutam 98.5 1.4E-05 3E-10 67.7 17.7 137 77-235 90-248 (264)
33 PF02239 Cytochrom_D1: Cytochr 98.4 1.3E-05 2.9E-10 71.7 16.2 151 68-236 29-190 (369)
34 COG2706 3-carboxymuconate cycl 98.4 3.2E-05 6.9E-10 67.1 17.0 132 76-225 190-342 (346)
35 PF07995 GSDH: Glucose / Sorbo 98.4 3.3E-06 7.3E-11 74.4 11.3 143 76-237 113-324 (331)
36 KOG0266 WD40 repeat-containing 98.4 2.2E-05 4.7E-10 72.3 16.8 140 74-236 201-353 (456)
37 COG2706 3-carboxymuconate cycl 98.4 5.8E-05 1.3E-09 65.6 17.6 142 76-235 39-208 (346)
38 PF05787 DUF839: Bacterial pro 98.3 9E-06 2E-10 75.7 12.1 79 156-235 432-519 (524)
39 COG3211 PhoX Predicted phospha 98.3 9.7E-06 2.1E-10 74.4 10.9 72 157-235 497-571 (616)
40 TIGR03606 non_repeat_PQQ dehyd 98.2 0.00018 3.8E-09 65.8 18.6 59 78-137 147-250 (454)
41 PF06977 SdiA-regulated: SdiA- 98.2 7.7E-05 1.7E-09 63.1 14.7 151 69-237 57-241 (248)
42 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00011 2.4E-09 65.1 16.3 129 88-234 13-172 (352)
43 PRK04792 tolB translocation pr 98.2 0.0002 4.2E-09 65.8 17.7 135 81-236 222-368 (448)
44 PRK05137 tolB translocation pr 98.1 0.00032 6.9E-09 64.0 17.9 135 81-236 206-352 (435)
45 PRK04922 tolB translocation pr 98.1 0.00022 4.9E-09 65.0 16.7 135 81-236 208-354 (433)
46 PF03022 MRJP: Major royal jel 98.1 5.5E-05 1.2E-09 65.4 11.8 99 121-236 5-149 (287)
47 KOG0291 WD40-repeat-containing 98.1 0.00019 4.1E-09 67.7 15.2 138 76-234 350-495 (893)
48 PRK03629 tolB translocation pr 98.0 0.00065 1.4E-08 62.0 17.8 135 81-236 203-349 (429)
49 cd00200 WD40 WD40 domain, foun 98.0 0.00076 1.7E-08 55.2 16.7 134 80-236 55-196 (289)
50 PF03022 MRJP: Major royal jel 98.0 0.00059 1.3E-08 59.0 16.0 155 80-236 4-253 (287)
51 PRK00178 tolB translocation pr 97.9 0.00099 2.1E-08 60.5 17.9 136 80-236 202-349 (430)
52 PF03088 Str_synth: Strictosid 97.9 6E-05 1.3E-09 53.5 7.7 60 80-140 1-81 (89)
53 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.0015 3.1E-08 58.1 17.9 64 165-236 253-318 (352)
54 PRK02889 tolB translocation pr 97.9 0.0013 2.8E-08 59.9 17.5 133 82-235 201-345 (427)
55 PRK05137 tolB translocation pr 97.9 0.0011 2.3E-08 60.6 16.9 133 81-235 250-394 (435)
56 TIGR02800 propeller_TolB tol-p 97.9 0.0014 3E-08 59.1 17.5 134 82-236 195-340 (417)
57 COG4946 Uncharacterized protei 97.8 0.00079 1.7E-08 60.8 14.5 127 91-235 375-506 (668)
58 PRK04922 tolB translocation pr 97.8 0.0018 3.9E-08 59.1 17.5 134 81-236 252-397 (433)
59 cd00200 WD40 WD40 domain, foun 97.8 0.0033 7.1E-08 51.4 17.3 135 78-236 95-238 (289)
60 KOG1446 Histone H3 (Lys4) meth 97.8 0.0027 5.9E-08 54.4 16.5 138 78-237 102-252 (311)
61 PF01436 NHL: NHL repeat; Int 97.8 4.6E-05 1E-09 42.0 3.9 21 159-179 1-21 (28)
62 PRK04792 tolB translocation pr 97.8 0.0022 4.8E-08 58.9 17.3 134 81-236 266-411 (448)
63 KOG0318 WD40 repeat stress pro 97.8 0.0022 4.7E-08 58.5 16.5 136 80-239 367-509 (603)
64 PF05787 DUF839: Bacterial pro 97.7 0.00083 1.8E-08 62.8 14.0 153 78-236 245-453 (524)
65 PF02239 Cytochrom_D1: Cytochr 97.7 0.00014 3E-09 65.1 8.5 89 129-237 7-97 (369)
66 COG3823 Glutamine cyclotransfe 97.7 0.00077 1.7E-08 55.0 11.5 100 116-235 131-246 (262)
67 PRK01742 tolB translocation pr 97.7 0.0028 6.1E-08 57.8 16.6 149 81-236 208-390 (429)
68 PF13360 PQQ_2: PQQ-like domai 97.7 0.0078 1.7E-07 49.6 17.9 108 83-210 32-144 (238)
69 KOG0286 G-protein beta subunit 97.7 0.0052 1.1E-07 52.5 16.0 134 78-234 147-290 (343)
70 PRK04043 tolB translocation pr 97.6 0.0048 1E-07 56.3 17.0 131 82-235 193-336 (419)
71 PRK03629 tolB translocation pr 97.6 0.0042 9.2E-08 56.7 15.6 116 98-234 180-303 (429)
72 TIGR02800 propeller_TolB tol-p 97.5 0.0091 2E-07 53.7 17.5 135 81-237 238-384 (417)
73 PRK01742 tolB translocation pr 97.5 0.0055 1.2E-07 55.9 15.9 118 97-235 184-309 (429)
74 TIGR03032 conserved hypothetic 97.5 0.0018 4E-08 56.0 11.9 136 79-237 105-260 (335)
75 PRK02889 tolB translocation pr 97.5 0.0054 1.2E-07 55.9 15.6 118 97-235 176-301 (427)
76 COG3204 Uncharacterized protei 97.5 0.012 2.7E-07 50.4 16.3 151 69-238 121-304 (316)
77 KOG1446 Histone H3 (Lys4) meth 97.5 0.011 2.4E-07 50.7 16.0 121 76-216 140-272 (311)
78 COG2133 Glucose/sorbosone dehy 97.5 0.0066 1.4E-07 54.6 15.5 59 78-137 178-260 (399)
79 KOG0315 G-protein beta subunit 97.4 0.0083 1.8E-07 50.3 14.4 140 80-237 128-278 (311)
80 PRK02888 nitrous-oxide reducta 97.4 0.008 1.7E-07 56.8 15.6 107 109-236 314-450 (635)
81 PTZ00421 coronin; Provisional 97.4 0.026 5.5E-07 52.6 19.0 134 78-234 77-228 (493)
82 PRK00178 tolB translocation pr 97.4 0.01 2.3E-07 53.9 15.9 117 98-235 180-304 (430)
83 PRK11138 outer membrane biogen 97.4 0.007 1.5E-07 54.5 14.4 100 87-211 256-358 (394)
84 PF06977 SdiA-regulated: SdiA- 97.3 0.001 2.2E-08 56.3 8.2 65 75-140 169-245 (248)
85 KOG0266 WD40 repeat-containing 97.3 0.011 2.5E-07 54.3 15.6 133 81-236 164-307 (456)
86 PRK01029 tolB translocation pr 97.3 0.034 7.5E-07 50.8 18.5 135 81-236 235-389 (428)
87 COG3204 Uncharacterized protei 97.3 0.003 6.5E-08 54.1 10.4 103 77-179 181-303 (316)
88 PRK04043 tolB translocation pr 97.3 0.017 3.6E-07 52.7 16.1 118 97-236 169-295 (419)
89 KOG0315 G-protein beta subunit 97.3 0.011 2.4E-07 49.5 13.4 135 80-236 87-234 (311)
90 TIGR03300 assembly_YfgL outer 97.3 0.011 2.4E-07 52.7 14.7 61 83-146 62-125 (377)
91 PF01436 NHL: NHL repeat; Int 97.3 0.00057 1.2E-08 37.6 3.8 26 77-102 2-28 (28)
92 KOG0318 WD40 repeat stress pro 97.2 0.017 3.7E-07 52.8 14.5 131 77-231 406-544 (603)
93 KOG2106 Uncharacterized conser 97.2 0.028 6.1E-07 51.3 15.7 133 78-235 331-465 (626)
94 KOG0272 U4/U6 small nuclear ri 97.1 0.003 6.6E-08 56.1 8.8 135 77-232 218-360 (459)
95 PF00058 Ldl_recept_b: Low-den 97.1 0.0022 4.7E-08 38.8 5.7 40 171-227 1-42 (42)
96 PF13449 Phytase-like: Esteras 97.1 0.062 1.4E-06 47.3 17.3 157 76-236 19-232 (326)
97 PRK02888 nitrous-oxide reducta 97.1 0.0067 1.4E-07 57.3 11.4 40 198-237 296-340 (635)
98 KOG0278 Serine/threonine kinas 97.1 0.048 1E-06 45.9 15.1 128 87-236 155-285 (334)
99 KOG1273 WD40 repeat protein [G 97.1 0.049 1.1E-06 47.2 15.5 145 76-238 65-217 (405)
100 PRK11138 outer membrane biogen 97.1 0.052 1.1E-06 48.8 16.9 58 87-146 69-140 (394)
101 PRK01029 tolB translocation pr 97.1 0.058 1.2E-06 49.3 17.3 126 81-227 285-424 (428)
102 KOG0279 G protein beta subunit 97.1 0.024 5.2E-07 48.2 13.4 133 77-229 106-245 (315)
103 PF08662 eIF2A: Eukaryotic tra 97.0 0.071 1.5E-06 43.3 15.5 120 97-237 39-163 (194)
104 TIGR03300 assembly_YfgL outer 97.0 0.024 5.3E-07 50.4 13.9 100 87-211 241-343 (377)
105 PF02333 Phytase: Phytase; In 96.9 0.03 6.6E-07 50.1 13.0 101 77-179 156-280 (381)
106 PF13360 PQQ_2: PQQ-like domai 96.9 0.12 2.7E-06 42.3 16.1 128 86-236 75-219 (238)
107 KOG1539 WD repeat protein [Gen 96.8 0.072 1.6E-06 51.3 15.9 140 79-236 451-636 (910)
108 KOG0289 mRNA splicing factor [ 96.8 0.026 5.5E-07 50.7 12.1 132 79-232 350-491 (506)
109 KOG0282 mRNA splicing factor [ 96.8 0.0058 1.3E-07 55.1 8.2 143 77-237 300-452 (503)
110 PF07433 DUF1513: Protein of u 96.8 0.048 1E-06 47.4 13.6 96 82-179 56-182 (305)
111 PF14517 Tachylectin: Tachylec 96.8 0.0038 8.2E-08 51.9 6.3 124 62-207 66-207 (229)
112 KOG0286 G-protein beta subunit 96.8 0.1 2.2E-06 44.8 14.7 131 81-232 191-330 (343)
113 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 0.076 1.6E-06 49.9 15.5 108 87-210 69-193 (527)
114 PTZ00420 coronin; Provisional 96.7 0.15 3.3E-06 48.2 17.5 113 77-211 75-202 (568)
115 KOG0291 WD40-repeat-containing 96.7 0.1 2.2E-06 49.9 15.8 95 79-179 438-541 (893)
116 PF13449 Phytase-like: Esteras 96.7 0.03 6.4E-07 49.3 11.7 64 161-235 86-164 (326)
117 PF05096 Glu_cyclase_2: Glutam 96.6 0.052 1.1E-06 46.2 12.3 117 68-209 36-160 (264)
118 KOG0973 Histone transcription 96.6 0.067 1.5E-06 52.6 14.2 98 79-177 132-237 (942)
119 KOG2048 WD40 repeat protein [G 96.6 0.052 1.1E-06 51.0 12.9 28 77-104 70-97 (691)
120 KOG0288 WD40 repeat protein Ti 96.5 0.12 2.5E-06 46.3 14.0 123 95-236 320-450 (459)
121 PTZ00421 coronin; Provisional 96.5 0.24 5.1E-06 46.2 16.9 139 79-235 128-277 (493)
122 PRK13684 Ycf48-like protein; P 96.5 0.33 7.1E-06 42.9 17.0 65 78-145 47-116 (334)
123 smart00135 LY Low-density lipo 96.5 0.0062 1.3E-07 36.2 4.3 28 212-239 3-30 (43)
124 KOG0283 WD40 repeat-containing 96.5 0.066 1.4E-06 51.2 13.0 139 78-235 411-564 (712)
125 COG3211 PhoX Predicted phospha 96.5 0.099 2.1E-06 48.7 13.7 79 156-236 413-517 (616)
126 KOG1274 WD40 repeat protein [G 96.5 0.082 1.8E-06 51.4 13.6 125 88-234 67-205 (933)
127 PLN00181 protein SPA1-RELATED; 96.5 0.29 6.3E-06 48.2 18.1 133 79-234 486-635 (793)
128 TIGR03118 PEPCTERM_chp_1 conse 96.4 0.15 3.3E-06 44.2 13.8 145 77-227 77-253 (336)
129 KOG0279 G protein beta subunit 96.4 0.17 3.8E-06 43.1 13.9 143 69-231 56-206 (315)
130 KOG0293 WD40 repeat-containing 96.4 0.043 9.2E-07 49.1 10.5 135 80-235 273-413 (519)
131 cd00216 PQQ_DH Dehydrogenases 96.4 0.28 6.1E-06 45.6 16.6 112 87-210 61-187 (488)
132 TIGR03118 PEPCTERM_chp_1 conse 96.4 0.2 4.3E-06 43.5 14.1 100 89-210 153-283 (336)
133 PF07433 DUF1513: Protein of u 96.3 0.097 2.1E-06 45.5 12.2 108 115-238 4-119 (305)
134 TIGR02276 beta_rpt_yvtn 40-res 96.3 0.021 4.5E-07 33.8 5.9 41 169-226 1-42 (42)
135 COG0823 TolB Periplasmic compo 96.2 0.094 2E-06 47.9 12.2 133 83-236 199-344 (425)
136 TIGR03032 conserved hypothetic 96.2 0.021 4.7E-07 49.5 7.4 61 68-133 195-257 (335)
137 KOG0973 Histone transcription 96.2 0.13 2.8E-06 50.7 13.5 137 78-237 71-239 (942)
138 COG1520 FOG: WD40-like repeat 96.2 0.068 1.5E-06 47.7 11.1 106 84-210 65-175 (370)
139 KOG0293 WD40 repeat-containing 96.1 0.1 2.3E-06 46.7 11.6 149 76-230 312-495 (519)
140 PLN00033 photosystem II stabil 96.1 0.57 1.2E-05 42.5 16.6 96 83-179 245-347 (398)
141 KOG0772 Uncharacterized conser 96.1 0.13 2.9E-06 47.2 12.3 121 58-180 295-430 (641)
142 KOG0265 U5 snRNP-specific prot 96.0 0.2 4.4E-06 43.1 12.1 129 82-230 53-187 (338)
143 PF14517 Tachylectin: Tachylec 95.9 0.38 8.3E-06 40.1 13.4 151 65-237 23-196 (229)
144 KOG0772 Uncharacterized conser 95.9 0.073 1.6E-06 48.9 9.7 136 80-234 272-426 (641)
145 PTZ00420 coronin; Provisional 95.9 0.76 1.7E-05 43.6 17.0 65 78-143 127-194 (568)
146 PF14583 Pectate_lyase22: Olig 95.9 0.12 2.7E-06 46.2 11.0 142 83-227 42-197 (386)
147 KOG0263 Transcription initiati 95.9 0.081 1.8E-06 50.4 10.3 105 69-179 528-639 (707)
148 KOG0263 Transcription initiati 95.9 0.13 2.9E-06 49.0 11.7 92 121-234 540-636 (707)
149 KOG0271 Notchless-like WD40 re 95.9 0.17 3.6E-06 45.0 11.4 38 69-106 240-278 (480)
150 smart00135 LY Low-density lipo 95.8 0.021 4.6E-07 33.8 4.3 33 158-207 7-40 (43)
151 KOG0296 Angio-associated migra 95.7 0.92 2E-05 40.1 15.4 133 82-236 70-209 (399)
152 KOG0273 Beta-transducin family 95.7 0.34 7.3E-06 44.1 13.0 73 77-150 236-313 (524)
153 KOG0272 U4/U6 small nuclear ri 95.7 0.28 6.2E-06 44.0 12.3 135 78-233 305-446 (459)
154 KOG2096 WD40 repeat protein [G 95.7 1.3 2.9E-05 38.6 18.2 140 78-235 88-246 (420)
155 KOG0294 WD40 repeat-containing 95.6 0.54 1.2E-05 40.9 13.4 92 81-179 48-147 (362)
156 COG1520 FOG: WD40-like repeat 95.6 0.23 4.9E-06 44.3 11.8 94 83-178 107-205 (370)
157 COG3292 Predicted periplasmic 95.5 0.12 2.6E-06 48.2 9.8 96 83-179 382-483 (671)
158 PF05935 Arylsulfotrans: Aryls 95.4 0.56 1.2E-05 43.6 14.2 114 82-214 153-309 (477)
159 KOG0301 Phospholipase A2-activ 95.4 0.3 6.5E-06 46.3 12.0 96 78-179 181-279 (745)
160 KOG0285 Pleiotropic regulator 95.4 0.37 8.1E-06 42.6 11.8 135 81-239 282-431 (460)
161 PRK13684 Ycf48-like protein; P 95.4 1.1 2.5E-05 39.5 15.4 83 90-177 102-190 (334)
162 cd00216 PQQ_DH Dehydrogenases 95.3 0.5 1.1E-05 43.9 13.5 100 90-211 304-429 (488)
163 PF08553 VID27: VID27 cytoplas 95.3 0.5 1.1E-05 46.3 13.7 128 89-234 494-635 (794)
164 KOG2048 WD40 repeat protein [G 95.3 0.56 1.2E-05 44.4 13.3 140 82-238 388-539 (691)
165 KOG2055 WD40 repeat protein [G 95.2 0.48 1E-05 43.0 12.2 140 78-235 215-362 (514)
166 KOG0273 Beta-transducin family 95.1 1.5 3.3E-05 40.0 15.2 65 78-143 319-386 (524)
167 PLN00181 protein SPA1-RELATED; 95.1 2.4 5.1E-05 41.9 18.2 131 80-235 579-726 (793)
168 KOG0289 mRNA splicing factor [ 95.1 1 2.3E-05 40.7 13.8 97 117-234 305-406 (506)
169 KOG1407 WD40 repeat protein [F 95.0 0.67 1.5E-05 39.3 11.8 131 42-178 66-208 (313)
170 COG4946 Uncharacterized protei 94.9 0.79 1.7E-05 42.0 12.8 39 198-236 382-420 (668)
171 KOG0296 Angio-associated migra 94.8 1.8 3.9E-05 38.3 14.4 113 79-214 109-228 (399)
172 KOG1274 WD40 repeat protein [G 94.8 1.1 2.5E-05 43.8 14.3 135 79-232 99-247 (933)
173 PF00058 Ldl_recept_b: Low-den 94.7 0.1 2.2E-06 31.4 4.7 38 128-169 1-42 (42)
174 KOG1215 Low-density lipoprotei 94.7 0.92 2E-05 45.3 14.1 143 71-237 475-628 (877)
175 KOG0303 Actin-binding protein 94.7 0.51 1.1E-05 42.2 10.8 93 82-179 137-236 (472)
176 PF08662 eIF2A: Eukaryotic tra 94.6 2 4.3E-05 34.8 13.8 95 79-179 62-163 (194)
177 KOG4649 PQQ (pyrrolo-quinoline 94.6 1.1 2.4E-05 38.2 12.2 99 90-210 66-169 (354)
178 KOG1445 Tumor-specific antigen 94.6 0.24 5.2E-06 46.8 8.9 134 79-235 630-782 (1012)
179 PRK13616 lipoprotein LpqB; Pro 94.6 2.9 6.2E-05 40.0 16.5 137 77-235 350-513 (591)
180 KOG0643 Translation initiation 94.5 2.3 5E-05 36.3 13.9 145 67-233 41-206 (327)
181 KOG1407 WD40 repeat protein [F 94.5 2.7 5.9E-05 35.8 14.8 134 78-234 66-206 (313)
182 PLN00033 photosystem II stabil 94.3 1.5 3.3E-05 39.7 13.6 97 80-179 284-390 (398)
183 KOG2106 Uncharacterized conser 94.3 1.2 2.7E-05 41.0 12.6 99 78-179 409-511 (626)
184 KOG0640 mRNA cleavage stimulat 94.2 0.43 9.3E-06 41.5 9.1 136 80-234 176-322 (430)
185 KOG0282 mRNA splicing factor [ 94.2 0.31 6.7E-06 44.4 8.6 137 73-232 211-357 (503)
186 KOG0319 WD40-repeat-containing 94.2 1.3 2.8E-05 42.5 12.9 128 82-231 25-161 (775)
187 KOG2055 WD40 repeat protein [G 94.0 0.65 1.4E-05 42.2 10.2 137 79-237 306-455 (514)
188 KOG0316 Conserved WD40 repeat- 94.0 1.6 3.5E-05 36.6 11.8 115 94-235 78-201 (307)
189 KOG0271 Notchless-like WD40 re 94.0 0.72 1.6E-05 41.1 10.2 122 88-232 337-466 (480)
190 PF10647 Gmad1: Lipoprotein Lp 94.0 3.4 7.3E-05 34.9 16.4 139 78-236 25-184 (253)
191 PF01731 Arylesterase: Arylest 93.9 0.15 3.3E-06 35.8 5.0 48 94-143 33-81 (86)
192 KOG0646 WD40 repeat protein [G 93.8 1.6 3.4E-05 39.8 12.2 140 76-235 80-235 (476)
193 COG3490 Uncharacterized protei 93.7 4.2 9.1E-05 35.2 15.1 96 83-179 120-245 (366)
194 KOG4378 Nuclear protein COP1 [ 93.7 0.61 1.3E-05 42.9 9.5 93 93-208 183-282 (673)
195 KOG1215 Low-density lipoprotei 93.7 1.3 2.8E-05 44.3 12.8 136 81-237 441-586 (877)
196 KOG2139 WD40 repeat protein [G 93.6 0.61 1.3E-05 41.3 9.1 61 159-235 195-256 (445)
197 COG3490 Uncharacterized protei 93.6 2.8 6.1E-05 36.3 12.8 126 85-237 44-181 (366)
198 KOG0310 Conserved WD40 repeat- 93.2 5.5 0.00012 36.5 14.7 133 79-235 156-297 (487)
199 KOG0645 WD40 repeat protein [G 93.2 4.9 0.00011 34.4 16.2 98 76-179 61-170 (312)
200 COG3292 Predicted periplasmic 93.1 1 2.2E-05 42.2 10.1 95 81-179 169-266 (671)
201 PF06433 Me-amine-dh_H: Methyl 93.1 3.9 8.5E-05 36.2 13.4 116 87-226 195-340 (342)
202 KOG0316 Conserved WD40 repeat- 92.5 4.4 9.6E-05 34.1 12.1 99 89-208 157-259 (307)
203 KOG2139 WD40 repeat protein [G 92.4 7.7 0.00017 34.6 14.4 92 80-179 199-301 (445)
204 KOG0771 Prolactin regulatory e 92.3 2.2 4.7E-05 38.3 10.7 138 80-234 148-298 (398)
205 KOG0306 WD40-repeat-containing 92.3 3.9 8.4E-05 39.6 12.9 130 81-234 513-651 (888)
206 KOG1009 Chromatin assembly com 92.2 1.2 2.5E-05 40.0 8.9 99 115-232 65-180 (434)
207 KOG0275 Conserved WD40 repeat- 92.0 0.51 1.1E-05 41.2 6.4 146 69-237 206-368 (508)
208 PF14870 PSII_BNR: Photosynthe 91.9 8 0.00017 33.7 16.7 97 81-179 149-252 (302)
209 KOG1009 Chromatin assembly com 91.9 3.2 6.9E-05 37.3 11.2 62 69-131 116-180 (434)
210 PF06739 SBBP: Beta-propeller 91.7 0.16 3.4E-06 29.9 2.1 20 160-179 13-32 (38)
211 KOG0771 Prolactin regulatory e 91.3 3.4 7.4E-05 37.0 10.9 136 78-232 188-339 (398)
212 TIGR03074 PQQ_membr_DH membran 91.2 9 0.0002 37.8 14.8 58 87-146 194-280 (764)
213 KOG0646 WD40 repeat protein [G 91.0 4.2 9E-05 37.1 11.2 106 87-210 188-311 (476)
214 PRK13616 lipoprotein LpqB; Pro 90.9 14 0.0003 35.5 15.4 138 82-238 402-559 (591)
215 KOG0292 Vesicle coat complex C 90.7 6.8 0.00015 38.9 13.0 67 76-143 250-319 (1202)
216 PF14870 PSII_BNR: Photosynthe 90.7 11 0.00023 33.0 15.1 136 77-237 17-164 (302)
217 KOG0313 Microtubule binding pr 90.6 12 0.00025 33.6 13.4 101 76-178 260-365 (423)
218 KOG1963 WD40 repeat protein [G 90.4 8.5 0.00018 37.7 13.3 94 80-178 209-311 (792)
219 PF06433 Me-amine-dh_H: Methyl 90.0 13 0.00029 32.9 14.2 152 76-235 134-307 (342)
220 COG0823 TolB Periplasmic compo 89.3 7.2 0.00016 35.7 11.7 57 164-235 242-299 (425)
221 KOG0268 Sof1-like rRNA process 89.2 4 8.6E-05 36.3 9.4 37 197-235 209-246 (433)
222 KOG2110 Uncharacterized conser 89.2 13 0.00029 33.1 12.6 83 95-179 151-238 (391)
223 KOG2919 Guanine nucleotide-bin 89.2 1.8 3.9E-05 38.0 7.2 158 8-177 183-358 (406)
224 PF05935 Arylsulfotrans: Aryls 89.2 18 0.00038 33.7 14.4 88 88-177 114-207 (477)
225 PF14269 Arylsulfotran_2: Aryl 89.0 15 0.00031 32.0 13.7 110 78-206 145-289 (299)
226 KOG0284 Polyadenylation factor 89.0 2.7 5.9E-05 37.8 8.4 139 68-229 87-234 (464)
227 PF02333 Phytase: Phytase; In 89.0 1.9 4.1E-05 38.8 7.5 66 77-143 208-287 (381)
228 KOG0639 Transducin-like enhanc 88.9 6.2 0.00014 36.6 10.7 128 87-234 431-568 (705)
229 PF06739 SBBP: Beta-propeller 88.8 0.78 1.7E-05 26.9 3.4 17 77-93 13-29 (38)
230 PF14339 DUF4394: Domain of un 88.8 4.4 9.4E-05 34.0 9.1 26 121-146 31-58 (236)
231 PF05694 SBP56: 56kDa selenium 88.7 0.84 1.8E-05 41.6 5.1 61 160-237 312-393 (461)
232 KOG0278 Serine/threonine kinas 88.7 14 0.00031 31.4 12.1 98 78-179 186-287 (334)
233 TIGR02276 beta_rpt_yvtn 40-res 88.6 2 4.4E-05 24.9 5.4 37 88-125 4-42 (42)
234 KOG0319 WD40-repeat-containing 88.5 4.7 0.0001 38.9 10.0 135 80-233 66-208 (775)
235 KOG4649 PQQ (pyrrolo-quinoline 88.5 15 0.00033 31.5 12.9 63 83-146 100-167 (354)
236 PRK13614 lipoprotein LpqB; Pro 88.5 23 0.0005 33.8 14.7 99 76-178 385-504 (573)
237 KOG0265 U5 snRNP-specific prot 88.4 11 0.00024 32.7 11.4 129 81-233 95-232 (338)
238 KOG0310 Conserved WD40 repeat- 88.1 21 0.00046 32.8 14.2 130 82-234 116-255 (487)
239 KOG1273 WD40 repeat protein [G 88.1 1 2.2E-05 39.3 5.0 58 162-236 26-84 (405)
240 KOG3881 Uncharacterized conser 88.1 10 0.00022 34.0 11.3 123 90-230 219-344 (412)
241 KOG1524 WD40 repeat-containing 87.9 3.5 7.7E-05 38.5 8.5 85 89-179 77-166 (737)
242 KOG0640 mRNA cleavage stimulat 87.8 11 0.00025 32.9 11.1 55 121-178 266-324 (430)
243 PF00930 DPPIV_N: Dipeptidyl p 87.8 13 0.00027 32.9 12.1 136 81-235 188-345 (353)
244 KOG0275 Conserved WD40 repeat- 87.7 18 0.00039 31.9 12.2 97 116-235 349-455 (508)
245 COG3823 Glutamine cyclotransfe 87.5 6 0.00013 32.8 8.8 54 126-179 184-249 (262)
246 PF11725 AvrE: Pathogenicity f 87.4 3.6 7.8E-05 43.3 9.1 117 94-237 379-506 (1774)
247 KOG1036 Mitotic spindle checkp 87.3 19 0.00041 31.4 13.0 76 78-153 15-93 (323)
248 smart00564 PQQ beta-propeller 86.9 1.3 2.9E-05 24.4 3.6 26 168-211 4-29 (33)
249 KOG0299 U3 snoRNP-associated p 86.8 6.7 0.00015 35.8 9.5 105 69-177 320-444 (479)
250 KOG0645 WD40 repeat protein [G 86.8 19 0.00042 30.9 15.4 100 78-179 16-125 (312)
251 KOG2110 Uncharacterized conser 86.7 3.6 7.9E-05 36.5 7.7 63 80-143 177-245 (391)
252 KOG0268 Sof1-like rRNA process 86.5 6.9 0.00015 34.8 9.2 131 80-233 191-331 (433)
253 KOG2321 WD40 repeat protein [G 86.2 9.1 0.0002 36.1 10.2 136 81-236 180-332 (703)
254 KOG0299 U3 snoRNP-associated p 85.6 29 0.00063 31.8 13.6 131 88-235 298-443 (479)
255 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.4 4.2 9.1E-05 38.3 8.0 65 127-210 69-142 (527)
256 KOG4547 WD40 repeat-containing 85.1 34 0.00074 32.2 14.0 113 92-228 75-195 (541)
257 KOG1036 Mitotic spindle checkp 85.0 19 0.00042 31.3 11.1 100 121-238 182-295 (323)
258 COG4447 Uncharacterized protei 84.5 8.4 0.00018 33.3 8.6 23 215-237 168-190 (339)
259 KOG1063 RNA polymerase II elon 84.4 13 0.00029 35.7 10.6 98 81-179 272-381 (764)
260 KOG3914 WD repeat protein WDR4 84.2 6.1 0.00013 35.3 7.9 100 115-236 62-170 (390)
261 COG4247 Phy 3-phytase (myo-ino 84.1 26 0.00057 30.0 12.5 65 78-143 154-232 (364)
262 KOG0301 Phospholipase A2-activ 83.9 17 0.00036 35.1 11.0 66 83-151 108-176 (745)
263 KOG0288 WD40 repeat protein Ti 83.5 7.3 0.00016 35.2 8.1 61 80-141 179-244 (459)
264 KOG0306 WD40-repeat-containing 83.4 34 0.00073 33.5 12.9 94 78-179 375-474 (888)
265 KOG1963 WD40 repeat protein [G 82.9 14 0.00031 36.1 10.4 90 80-170 255-356 (792)
266 KOG1538 Uncharacterized conser 82.4 51 0.0011 32.1 14.6 64 78-142 14-79 (1081)
267 KOG0283 WD40 repeat-containing 82.3 34 0.00073 33.4 12.6 91 80-177 373-470 (712)
268 COG4222 Uncharacterized protei 82.3 26 0.00056 31.8 11.3 28 75-102 67-95 (391)
269 PF11768 DUF3312: Protein of u 81.9 11 0.00023 35.5 8.9 65 78-143 261-326 (545)
270 KOG0641 WD40 repeat protein [G 81.7 30 0.00065 29.0 14.0 53 126-178 192-250 (350)
271 KOG4328 WD40 protein [Function 81.4 22 0.00047 32.7 10.4 134 80-235 190-340 (498)
272 PF00930 DPPIV_N: Dipeptidyl p 81.3 27 0.00058 30.8 11.2 41 197-237 259-300 (353)
273 PF08553 VID27: VID27 cytoplas 81.2 4 8.8E-05 40.2 6.3 63 81-143 582-645 (794)
274 PF07494 Reg_prop: Two compone 81.2 2.2 4.8E-05 22.1 2.6 18 160-177 5-22 (24)
275 KOG4441 Proteins containing BT 80.6 27 0.00058 33.4 11.5 129 87-235 380-528 (571)
276 KOG0639 Transducin-like enhanc 79.8 16 0.00035 34.1 9.1 58 82-142 515-577 (705)
277 KOG4441 Proteins containing BT 79.7 24 0.00051 33.7 10.8 130 87-235 332-481 (571)
278 PF10647 Gmad1: Lipoprotein Lp 78.6 39 0.00084 28.4 15.5 142 76-237 68-228 (253)
279 KOG2394 WD40 protein DMR-N9 [G 78.5 13 0.00028 34.8 8.2 88 78-169 292-384 (636)
280 KOG0284 Polyadenylation factor 77.5 19 0.00041 32.6 8.6 96 78-179 182-284 (464)
281 KOG1272 WD40-repeat-containing 76.5 4.1 8.9E-05 37.3 4.4 115 96-233 190-309 (545)
282 KOG2321 WD40 repeat protein [G 76.3 48 0.001 31.6 11.2 114 81-213 138-265 (703)
283 PF13570 PQQ_3: PQQ-like domai 75.7 3.6 7.8E-05 23.9 2.7 22 82-104 17-38 (40)
284 PHA02713 hypothetical protein; 75.3 61 0.0013 30.8 12.2 55 167-235 460-518 (557)
285 KOG0295 WD40 repeat-containing 75.1 62 0.0013 29.0 12.6 139 79-234 196-351 (406)
286 KOG0285 Pleiotropic regulator 74.5 65 0.0014 28.9 12.9 96 79-179 154-255 (460)
287 PF00400 WD40: WD domain, G-be 74.4 7.8 0.00017 21.8 4.0 28 76-103 11-39 (39)
288 PF01011 PQQ: PQQ enzyme repea 74.2 5.8 0.00013 22.9 3.3 14 197-210 9-22 (38)
289 KOG4532 WD40-like repeat conta 74.1 58 0.0013 28.2 13.0 39 198-236 274-321 (344)
290 PF14583 Pectate_lyase22: Olig 73.2 23 0.00051 32.0 8.3 60 160-234 36-97 (386)
291 TIGR03074 PQQ_membr_DH membran 73.0 17 0.00036 36.0 8.0 21 127-147 194-215 (764)
292 KOG2314 Translation initiation 72.8 39 0.00085 32.0 9.7 100 121-237 450-557 (698)
293 KOG4378 Nuclear protein COP1 [ 72.8 84 0.0018 29.5 12.8 92 122-234 170-267 (673)
294 KOG2394 WD40 protein DMR-N9 [G 72.6 4.2 9.2E-05 37.9 3.5 57 161-234 292-349 (636)
295 PF05694 SBP56: 56kDa selenium 71.9 45 0.00097 30.8 9.8 90 89-179 260-394 (461)
296 PF02897 Peptidase_S9_N: Proly 71.9 44 0.00095 30.0 10.1 65 165-236 175-245 (414)
297 PF07676 PD40: WD40-like Beta 71.5 7.8 0.00017 22.1 3.5 16 220-235 11-26 (39)
298 PRK14131 N-acetylneuraminic ac 71.2 76 0.0016 28.3 16.4 37 198-235 189-227 (376)
299 TIGR03803 Gloeo_Verruco Gloeo_ 71.1 13 0.00027 21.3 4.1 31 170-213 1-31 (34)
300 PRK12641 flgF flagellar basal 71.1 62 0.0013 27.4 10.1 13 164-176 132-144 (252)
301 TIGR02608 delta_60_rpt delta-6 69.9 21 0.00045 22.8 5.3 38 162-210 3-40 (55)
302 KOG1379 Serine/threonine prote 68.6 26 0.00056 30.8 7.2 78 123-216 175-254 (330)
303 PRK13613 lipoprotein LpqB; Pro 68.5 1.2E+02 0.0025 29.3 14.0 142 76-235 411-569 (599)
304 KOG0264 Nucleosome remodeling 68.3 96 0.0021 28.3 11.5 135 79-235 180-334 (422)
305 KOG3881 Uncharacterized conser 68.1 94 0.002 28.1 13.0 45 193-238 221-268 (412)
306 smart00284 OLF Olfactomedin-li 67.8 77 0.0017 27.0 10.2 54 81-135 132-193 (255)
307 smart00284 OLF Olfactomedin-li 67.7 77 0.0017 27.0 15.2 141 76-237 74-243 (255)
308 COG5276 Uncharacterized conser 67.4 87 0.0019 27.5 13.4 95 81-179 176-276 (370)
309 KOG0308 Conserved WD40 repeat- 67.2 99 0.0022 29.9 11.2 63 81-144 176-241 (735)
310 KOG0292 Vesicle coat complex C 67.0 1.1E+02 0.0023 31.0 11.6 66 77-143 10-78 (1202)
311 KOG2919 Guanine nucleotide-bin 66.6 94 0.002 27.6 10.5 56 86-143 121-184 (406)
312 KOG0305 Anaphase promoting com 65.7 78 0.0017 29.6 10.2 122 92-234 275-404 (484)
313 PF04053 Coatomer_WDAD: Coatom 65.5 1.1E+02 0.0025 28.2 11.6 125 77-234 33-161 (443)
314 KOG0295 WD40 repeat-containing 65.5 1E+02 0.0022 27.6 13.8 123 82-228 241-387 (406)
315 PF02191 OLF: Olfactomedin-lik 65.2 85 0.0018 26.6 14.7 142 76-238 69-239 (250)
316 PF14269 Arylsulfotran_2: Aryl 64.9 78 0.0017 27.5 9.7 90 117-214 145-248 (299)
317 KOG3567 Peptidylglycine alpha- 64.7 11 0.00023 34.8 4.3 24 156-179 463-486 (501)
318 PHA02713 hypothetical protein; 64.6 1.3E+02 0.0028 28.5 13.4 123 87-214 303-448 (557)
319 KOG2395 Protein involved in va 64.2 41 0.00089 31.7 8.0 38 197-234 450-488 (644)
320 KOG0294 WD40 repeat-containing 64.2 1E+02 0.0022 27.2 12.8 96 77-179 169-271 (362)
321 PRK12690 flgF flagellar basal 64.1 55 0.0012 27.5 8.4 13 163-175 136-148 (238)
322 KOG0641 WD40 repeat protein [G 63.9 88 0.0019 26.3 14.4 65 77-142 33-115 (350)
323 KOG0276 Vesicle coat complex C 63.2 1.5E+02 0.0033 28.7 12.4 27 77-103 352-378 (794)
324 PF12275 DUF3616: Protein of u 62.6 1.1E+02 0.0024 27.1 11.8 18 77-95 170-187 (330)
325 PLN03215 ascorbic acid mannose 62.0 1.1E+02 0.0023 27.7 10.1 19 87-105 209-227 (373)
326 KOG1445 Tumor-specific antigen 61.8 1.3E+02 0.0028 29.3 10.9 81 94-176 697-781 (1012)
327 KOG1063 RNA polymerase II elon 60.9 35 0.00077 33.0 7.2 97 79-179 528-638 (764)
328 PF04762 IKI3: IKI3 family; I 60.9 1.4E+02 0.0029 30.5 11.8 40 197-236 96-139 (928)
329 KOG0643 Translation initiation 60.9 1.1E+02 0.0024 26.4 14.7 134 82-234 16-164 (327)
330 PRK13614 lipoprotein LpqB; Pro 59.2 1.7E+02 0.0037 28.1 15.0 92 78-174 344-449 (573)
331 KOG0647 mRNA export protein (c 58.4 15 0.00033 32.0 4.0 58 75-132 250-309 (347)
332 KOG0305 Anaphase promoting com 58.1 1.6E+02 0.0035 27.5 14.1 136 81-236 306-450 (484)
333 KOG1524 WD40 repeat-containing 57.9 1.4E+02 0.0031 28.3 10.3 68 105-177 176-244 (737)
334 PRK13613 lipoprotein LpqB; Pro 56.9 1.9E+02 0.0041 27.9 15.1 143 78-234 364-522 (599)
335 PF14339 DUF4394: Domain of un 56.3 1.2E+02 0.0026 25.5 9.5 64 79-143 29-101 (236)
336 KOG1310 WD40 repeat protein [G 56.3 84 0.0018 29.9 8.6 97 79-178 53-167 (758)
337 COG5167 VID27 Protein involved 56.2 1.9E+02 0.004 27.6 12.0 120 95-234 488-620 (776)
338 KOG0647 mRNA export protein (c 56.1 68 0.0015 28.1 7.5 73 121-214 32-110 (347)
339 PHA02790 Kelch-like protein; P 55.7 1.7E+02 0.0037 27.1 13.0 103 87-214 318-431 (480)
340 PF04841 Vps16_N: Vps16, N-ter 55.1 1.7E+02 0.0036 26.6 14.5 32 77-108 81-112 (410)
341 KOG4227 WD40 repeat protein [G 53.9 1.8E+02 0.0038 26.6 9.9 62 81-143 110-176 (609)
342 KOG2096 WD40 repeat protein [G 53.9 1.6E+02 0.0035 26.2 13.3 45 92-137 204-249 (420)
343 PF02897 Peptidase_S9_N: Proly 53.8 32 0.0007 30.8 5.7 62 161-237 125-189 (414)
344 PRK12689 flgF flagellar basal 53.7 52 0.0011 27.9 6.6 19 158-176 133-154 (253)
345 PF07202 Tcp10_C: T-complex pr 52.9 1.2E+02 0.0026 24.4 15.7 12 219-230 142-155 (179)
346 KOG2315 Predicted translation 52.7 2.1E+02 0.0046 27.1 13.5 119 97-238 251-375 (566)
347 KOG0303 Actin-binding protein 52.2 1.9E+02 0.0041 26.4 11.6 108 81-210 86-207 (472)
348 KOG3621 WD40 repeat-containing 52.1 52 0.0011 31.9 6.8 27 79-105 127-154 (726)
349 KOG4328 WD40 protein [Function 51.0 2.1E+02 0.0045 26.6 11.4 108 81-206 374-495 (498)
350 PF14157 YmzC: YmzC-like prote 50.3 23 0.00049 23.2 2.9 16 198-213 41-56 (63)
351 CHL00038 psbL photosystem II p 50.0 42 0.00092 19.4 3.6 11 15-25 14-24 (38)
352 KOG1272 WD40-repeat-containing 49.5 98 0.0021 28.8 7.8 56 122-179 257-313 (545)
353 KOG0650 WD40 repeat nucleolar 48.5 1.4E+02 0.003 28.8 8.7 92 79-178 524-627 (733)
354 PF15492 Nbas_N: Neuroblastoma 48.3 1.8E+02 0.0039 25.1 9.5 74 122-213 3-80 (282)
355 PRK00753 psbL photosystem II r 47.3 47 0.001 19.3 3.6 15 15-29 15-29 (39)
356 PRK12694 flgG flagellar basal 47.0 43 0.00093 28.4 5.1 13 164-176 148-160 (260)
357 COG4393 Predicted membrane pro 46.8 94 0.002 27.6 7.0 40 85-125 286-335 (405)
358 COG4787 FlgF Flagellar basal b 46.4 1.4E+02 0.003 24.9 7.5 62 115-177 74-147 (251)
359 KOG1408 WD40 repeat protein [F 46.0 2.1E+02 0.0045 28.4 9.6 66 80-146 600-673 (1080)
360 COG5083 SMP2 Uncharacterized p 45.5 57 0.0012 30.1 5.7 63 160-237 24-88 (580)
361 KOG0322 G-protein beta subunit 45.3 51 0.0011 28.4 5.0 51 121-176 256-310 (323)
362 PF13964 Kelch_6: Kelch motif 45.2 54 0.0012 19.6 4.1 37 167-214 8-44 (50)
363 KOG3914 WD repeat protein WDR4 44.5 2.3E+02 0.005 25.7 9.2 64 78-143 109-178 (390)
364 PRK12640 flgF flagellar basal 44.3 1.3E+02 0.0029 25.3 7.6 14 163-176 134-147 (246)
365 KOG0264 Nucleosome remodeling 43.7 2.5E+02 0.0053 25.8 9.4 109 78-206 229-347 (422)
366 KOG0313 Microtubule binding pr 43.2 2.6E+02 0.0056 25.4 13.1 140 74-236 191-364 (423)
367 PRK12636 flgG flagellar basal 43.1 61 0.0013 27.6 5.4 13 164-176 150-162 (263)
368 KOG0918 Selenium-binding prote 42.6 85 0.0018 28.7 6.2 19 219-237 390-408 (476)
369 PRK12643 flgF flagellar basal 42.4 1.2E+02 0.0027 24.9 6.9 19 158-176 126-146 (209)
370 KOG0307 Vesicle coat complex C 42.3 82 0.0018 32.1 6.7 129 81-210 121-288 (1049)
371 COG4993 Gcd Glucose dehydrogen 42.3 3.4E+02 0.0073 26.5 13.1 40 65-104 184-231 (773)
372 PF15176 LRR19-TM: Leucine-ric 42.0 36 0.00079 24.5 3.2 33 10-43 9-42 (102)
373 KOG0281 Beta-TrCP (transducin 41.9 2.1E+02 0.0045 25.8 8.4 38 198-237 340-377 (499)
374 PF15240 Pro-rich: Proline-ric 41.7 17 0.00036 29.1 1.6 14 21-34 1-14 (179)
375 PRK10115 protease 2; Provision 41.2 71 0.0015 31.2 6.2 63 159-236 126-190 (686)
376 KOG0308 Conserved WD40 repeat- 41.0 3.5E+02 0.0076 26.4 13.2 95 79-179 120-233 (735)
377 KOG0642 Cell-cycle nuclear pro 40.9 3E+02 0.0064 26.2 9.6 134 81-232 401-546 (577)
378 PF02191 OLF: Olfactomedin-lik 40.8 2.2E+02 0.0048 24.0 11.2 96 81-177 127-237 (250)
379 PRK12817 flgG flagellar basal 40.7 2.2E+02 0.0048 24.1 8.5 15 163-177 152-166 (260)
380 KOG0302 Ribosome Assembly prot 40.6 2.8E+02 0.0061 25.2 10.7 66 77-143 210-285 (440)
381 PRK13615 lipoprotein LpqB; Pro 40.5 3.4E+02 0.0073 26.0 16.2 139 78-235 335-487 (557)
382 COG3308 Predicted membrane pro 40.5 43 0.00094 25.0 3.5 41 1-45 1-42 (131)
383 PF05567 Neisseria_PilC: Neiss 40.4 52 0.0011 29.1 4.7 57 160-234 208-275 (335)
384 KOG2111 Uncharacterized conser 40.1 2.7E+02 0.0058 24.7 15.0 119 95-235 111-244 (346)
385 PHA03098 kelch-like protein; P 39.9 3.1E+02 0.0068 25.5 13.2 112 87-214 294-422 (534)
386 KOG0649 WD40 repeat protein [G 38.2 2.6E+02 0.0056 24.0 13.4 69 80-150 118-194 (325)
387 PF08309 LVIVD: LVIVD repeat; 37.8 75 0.0016 18.9 3.7 22 121-143 6-27 (42)
388 PRK12818 flgG flagellar basal 37.4 65 0.0014 27.3 4.7 13 163-175 154-166 (256)
389 KOG1408 WD40 repeat protein [F 36.5 2.1E+02 0.0046 28.3 8.2 92 121-233 601-699 (1080)
390 PRK12816 flgG flagellar basal 36.1 83 0.0018 26.8 5.1 14 163-176 149-162 (264)
391 KOG2395 Protein involved in va 35.9 90 0.002 29.6 5.5 63 81-143 435-498 (644)
392 PF15232 DUF4585: Domain of un 35.8 1E+02 0.0023 20.9 4.4 34 165-213 10-44 (75)
393 KOG3567 Peptidylglycine alpha- 34.6 25 0.00053 32.5 1.7 37 70-106 460-497 (501)
394 KOG1523 Actin-related protein 34.3 3.3E+02 0.0072 24.1 10.7 64 79-143 58-127 (361)
395 KOG0649 WD40 repeat protein [G 34.1 3E+02 0.0065 23.6 10.6 41 158-216 113-154 (325)
396 COG3111 Periplasmic protein wi 34.1 1.7E+02 0.0038 22.0 5.8 8 121-128 95-102 (128)
397 KOG0270 WD40 repeat-containing 34.1 3.8E+02 0.0083 24.7 9.6 64 78-143 331-401 (463)
398 PF11768 DUF3312: Protein of u 33.7 1.5E+02 0.0033 28.1 6.7 40 197-237 280-319 (545)
399 PF04762 IKI3: IKI3 family; I 33.6 5.4E+02 0.012 26.3 14.6 146 81-231 261-440 (928)
400 KOG1334 WD40 repeat protein [G 33.4 2.5E+02 0.0055 26.3 7.9 143 88-235 200-354 (559)
401 KOG0281 Beta-TrCP (transducin 33.2 76 0.0016 28.4 4.4 90 81-180 282-379 (499)
402 TIGR02488 flgG_G_neg flagellar 32.9 1E+02 0.0023 26.0 5.3 13 164-176 146-158 (259)
403 KOG1539 WD repeat protein [Gen 32.8 5.3E+02 0.011 26.0 13.7 85 90-179 217-308 (910)
404 KOG3621 WD40 repeat-containing 32.2 2E+02 0.0044 28.1 7.3 92 89-181 47-147 (726)
405 KOG1332 Vesicle coat complex C 31.8 3.3E+02 0.0072 23.3 10.3 89 89-179 25-124 (299)
406 PHA02790 Kelch-like protein; P 31.5 4.2E+02 0.0092 24.5 13.2 108 87-213 271-391 (480)
407 KOG4497 Uncharacterized conser 31.5 2.4E+02 0.0052 25.2 7.1 59 162-236 94-152 (447)
408 PRK12692 flgG flagellar basal 31.3 1.3E+02 0.0029 25.5 5.7 14 163-176 147-160 (262)
409 PF12894 Apc4_WD40: Anaphase-p 30.6 1.3E+02 0.0028 18.3 4.4 28 80-107 15-43 (47)
410 PRK07021 fliL flagellar basal 30.4 1E+02 0.0022 24.1 4.5 6 172-177 153-158 (162)
411 PHA03283 envelope glycoprotein 30.2 78 0.0017 29.7 4.2 27 15-41 396-422 (542)
412 PRK03427 cell division protein 30.2 45 0.00097 29.5 2.5 23 19-41 5-28 (333)
413 PHA03098 kelch-like protein; P 29.8 4.6E+02 0.0099 24.4 12.9 112 87-215 389-520 (534)
414 PF11161 DUF2944: Protein of u 29.7 1.3E+02 0.0028 24.4 4.8 53 89-143 76-133 (187)
415 PF13088 BNR_2: BNR repeat-lik 28.9 3.3E+02 0.0072 22.4 8.2 16 159-175 260-275 (275)
416 TIGR03548 mutarot_permut cycli 28.7 3.8E+02 0.0082 23.0 13.2 48 87-135 123-179 (323)
417 KOG1538 Uncharacterized conser 28.7 5.9E+02 0.013 25.2 14.6 60 78-137 134-203 (1081)
418 KOG0276 Vesicle coat complex C 28.7 5.6E+02 0.012 25.0 10.1 88 78-171 99-195 (794)
419 PRK12642 flgF flagellar basal 28.6 1.7E+02 0.0037 24.5 5.8 12 164-175 135-146 (241)
420 PRK12819 flgG flagellar basal 28.5 3E+02 0.0065 23.3 7.3 13 164-176 149-161 (257)
421 KOG2103 Uncharacterized conser 27.8 3.3E+02 0.0071 27.3 8.0 43 168-210 485-530 (910)
422 TIGR03547 muta_rot_YjhT mutatr 27.2 4.1E+02 0.0089 23.0 14.6 48 87-135 17-71 (346)
423 KOG1920 IkappaB kinase complex 26.2 5.7E+02 0.012 26.9 9.6 41 197-237 89-129 (1265)
424 COG4590 ABC-type uncharacteriz 25.4 1.5E+02 0.0033 27.7 5.1 22 217-238 357-378 (733)
425 PRK13717 conjugal transfer pro 24.6 1.5E+02 0.0031 22.5 4.0 28 1-28 1-28 (128)
426 PRK13615 lipoprotein LpqB; Pro 24.5 6.3E+02 0.014 24.2 13.6 91 121-234 338-433 (557)
427 PF08194 DIM: DIM protein; In 24.4 66 0.0014 18.6 1.7 14 19-32 1-14 (36)
428 PF04571 Lipin_N: lipin, N-ter 23.9 2.5E+02 0.0053 20.7 5.1 65 158-237 23-89 (110)
429 PRK10626 hypothetical protein; 23.8 2.4E+02 0.0053 23.8 5.7 19 82-103 48-66 (239)
430 KOG0274 Cdc4 and related F-box 23.3 6.5E+02 0.014 23.9 12.8 92 78-179 251-349 (537)
431 KOG4497 Uncharacterized conser 22.7 3.5E+02 0.0076 24.2 6.6 61 69-131 85-148 (447)
432 PRK12693 flgG flagellar basal 22.6 2.5E+02 0.0055 23.7 5.8 13 164-176 148-160 (261)
433 KOG0267 Microtubule severing p 22.1 6.1E+02 0.013 25.2 8.5 67 76-143 112-181 (825)
434 COG5276 Uncharacterized conser 21.9 5.6E+02 0.012 22.7 12.5 86 87-177 96-188 (370)
435 PF14564 Membrane_bind: Membra 21.9 1.1E+02 0.0023 22.5 2.9 33 197-230 68-101 (110)
436 PRK02654 putative inner membra 21.8 3.6E+02 0.0077 24.2 6.5 34 13-49 94-127 (375)
437 PRK12691 flgG flagellar basal 21.7 2E+02 0.0044 24.3 5.0 13 164-176 148-160 (262)
438 KOG0302 Ribosome Assembly prot 21.6 3.5E+02 0.0076 24.6 6.5 66 77-143 258-329 (440)
439 KOG0277 Peroxisomal targeting 21.5 3.7E+02 0.0079 23.2 6.3 60 83-143 154-218 (311)
440 PF08789 PBCV_basic_adap: PBCV 21.5 1.9E+02 0.0042 17.1 3.7 13 167-179 4-16 (40)
441 KOG3545 Olfactomedin and relat 21.3 5.1E+02 0.011 22.0 7.1 56 80-136 125-188 (249)
442 PF02393 US22: US22 like; Int 20.8 1.1E+02 0.0024 22.2 2.9 21 197-217 90-110 (125)
443 PF12071 DUF3551: Protein of u 20.8 1.1E+02 0.0024 21.2 2.7 23 19-41 1-23 (82)
444 PF14779 BBS1: Ciliary BBSome 20.7 4.2E+02 0.009 22.6 6.6 53 88-141 196-254 (257)
445 KOG0277 Peroxisomal targeting 20.6 5.6E+02 0.012 22.1 10.6 65 78-143 62-132 (311)
446 PRK00888 ftsB cell division pr 20.4 1E+02 0.0022 22.3 2.5 20 19-38 1-20 (105)
447 KOG1897 Damage-specific DNA bi 20.3 9.7E+02 0.021 24.8 9.7 76 69-146 299-390 (1096)
448 KOG1896 mRNA cleavage and poly 20.1 5.3E+02 0.012 27.2 8.0 25 70-94 1090-1114(1366)
449 PF15492 Nbas_N: Neuroblastoma 20.0 5.8E+02 0.013 22.1 12.4 65 82-146 3-74 (282)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=8.4e-33 Score=239.01 Aligned_cols=187 Identities=31% Similarity=0.500 Sum_probs=157.5
Q ss_pred CCCCCCCCCCCCcccccceEeccCCcCCcceEEEcCCCC--EEEEeCCCeEEEEecC---------C-cEEEeeeccCcC
Q 026389 51 PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHKN---------G-TWENWKLIGGDT 118 (239)
Q Consensus 51 p~~~~~g~~~~n~~l~~~~~l~~g~~~gPe~ia~d~~G~--ly~~~~~g~I~~~~~~---------G-~~~~~~~~~~~p 118 (239)
++.|..+.+.+++.+...|.+..+....|+.+.+. +|+ +|++..+|+|.+.+.. + ........||||
T Consensus 39 ~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRP 117 (376)
T KOG1520|consen 39 SKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRP 117 (376)
T ss_pred CCCCcccccccccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCc
Confidence 44444477788887777777777665555555555 344 6788889998887641 1 122335678999
Q ss_pred ccCeEEcCCC-CEEEEeCCCCeEEEccCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeec
Q 026389 119 LLGITTTQEN-EILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK 195 (239)
Q Consensus 119 ~~Gl~~d~~G-~L~v~d~~~g~~~v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~ 195 (239)
+ ||+++..| +|||||++.|++.+++.| .+.+.+..+|.++.+.|+++|+++|.+||||++++|+.++++.+++|+.
T Consensus 118 L-Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~ 196 (376)
T KOG1520|consen 118 L-GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGD 196 (376)
T ss_pred c-eEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCC
Confidence 9 99999887 999999999999999654 7888889999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389 196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239 (239)
Q Consensus 196 ~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~~ 239 (239)
++||+++||+.+++++++++++.+|||+++|+|++++.++||.+
T Consensus 197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~ 240 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT 240 (376)
T ss_pred CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc
Confidence 99999999999999999999999999999999999999999864
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.89 E-value=4.8e-22 Score=167.51 Aligned_cols=148 Identities=27% Similarity=0.419 Sum_probs=117.9
Q ss_pred cceEEEcC-CCCEEEEe-CCCeEEEEecCCcEEEeeeccCcCccCeEEc-CCCCEEEEeCCCCeEEEc-cCC-ceEEecc
Q 026389 79 PEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASH 153 (239)
Q Consensus 79 Pe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~ 153 (239)
|||++||+ +|.||+++ .+++|+++++++.......... |. |++++ ++|+||||+. .++..++ .+| .+.+...
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeec
Confidence 78999997 89999887 7899999998776544333333 99 99999 8899999997 4556668 567 7777766
Q ss_pred cCCc-cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEE
Q 026389 154 VNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL 232 (239)
Q Consensus 154 ~~g~-~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~l 232 (239)
..+. ++..|||+++|++|++|||++...... ....|+||+++++ ++++.+.+++..||||+|++||++|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchhe
Confidence 5454 889999999999999999998732110 0112899999998 8899999999999999999999999
Q ss_pred EEEeCCC
Q 026389 233 VVCETFK 239 (239)
Q Consensus 233 yvadt~~ 239 (239)
||+||.+
T Consensus 149 yv~ds~~ 155 (246)
T PF08450_consen 149 YVADSFN 155 (246)
T ss_dssp EEEETTT
T ss_pred eeccccc
Confidence 9999863
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2e-21 Score=168.34 Aligned_cols=154 Identities=29% Similarity=0.395 Sum_probs=122.2
Q ss_pred CcceEEEcCCC-CEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCc-eEEecc
Q 026389 78 GPEDVCVDRNG-VLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGV-TVLASH 153 (239)
Q Consensus 78 gPe~ia~d~~G-~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~-~~l~~~ 153 (239)
-.||..|++++ .|| +....++|+++++ +|+.+.|......+. ++.++.+|+|++|+.+..++.++..+. +.+...
T Consensus 26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEccccEEEeccCCceeEEeccc
Confidence 34444777754 466 5559999999998 488888988888899 999999999999987655555533444 788888
Q ss_pred cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEE
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV 233 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~ly 233 (239)
.++.+.+++||+.++++|++||+++.+ +. ...-+.++.|+|||+||.++.++.+.+.+..||||||||||++||
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEE
Confidence 888899999999999999999999983 11 233345677899999997555555555599999999999999999
Q ss_pred EEeCC
Q 026389 234 VCETF 238 (239)
Q Consensus 234 vadt~ 238 (239)
++||.
T Consensus 179 ~aDT~ 183 (307)
T COG3386 179 VADTP 183 (307)
T ss_pred EEeCC
Confidence 99995
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.87 E-value=8.5e-23 Score=144.73 Aligned_cols=77 Identities=49% Similarity=0.934 Sum_probs=64.3
Q ss_pred ccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389 163 DDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239 (239)
Q Consensus 163 n~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~~ 239 (239)
||++|+++ |.|||||++++|..+++..+++|++++|||++|||.++++++++++|.+||||++++|+++|+|+||++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 79999999 999999999999999999999999999999999999999999999999999999999999999999974
No 5
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.73 E-value=3.3e-16 Score=139.69 Aligned_cols=166 Identities=22% Similarity=0.314 Sum_probs=121.3
Q ss_pred ceEeccC-CcCCcceEEEcCCCCEEEEeC------------CC-eEEEEec---CCc---EEEeeeccCcCccCeEEcCC
Q 026389 68 VTRLGEG-ILNGPEDVCVDRNGVLYTATR------------DG-WIKRLHK---NGT---WENWKLIGGDTLLGITTTQE 127 (239)
Q Consensus 68 ~~~l~~g-~~~gPe~ia~d~~G~ly~~~~------------~g-~I~~~~~---~G~---~~~~~~~~~~p~~Gl~~d~~ 127 (239)
++.++.+ .+..|.+|++|++|+||++.. .+ +|++++. ||+ ++.+.+....|+ ||++.++
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~ 82 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVG 82 (367)
T ss_pred EEEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecC
Confidence 4455543 588999999999999999852 23 8999874 454 467777788999 9999988
Q ss_pred CCEEEEeCCCCeEEE-cc--C----C-ceEEecccCCc---cccccccEEEcCCCCEEEEeCCCCcC--cccccccceee
Q 026389 128 NEILVCDADKGLLKV-TE--E----G-VTVLASHVNGS---RINLADDLIAATDGSIYFSVASTKFG--LHNWGLDLLEA 194 (239)
Q Consensus 128 G~L~v~d~~~g~~~v-~~--~----g-~~~l~~~~~g~---~~~~pn~l~vd~dG~iy~td~~~~~~--~~~~~~~~~e~ 194 (239)
| |||++.. .++++ +. + + .+++.+.+... ....++++++++||+|||++.+.... ......+..+.
T Consensus 83 G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 83 G-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred C-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 8 9999754 57666 32 2 2 34565554332 35679999999999999998852111 00000011123
Q ss_pred cCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 195 ~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
...|+++||+|++++.+++..++.+|+|++|+++|+ +|++|.
T Consensus 161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence 345899999999999999999999999999999998 578775
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.72 E-value=4.3e-16 Score=131.20 Aligned_cols=143 Identities=22% Similarity=0.318 Sum_probs=108.0
Q ss_pred CcCCcceEEEcCCCCEEEEeC-C--------CeEEEEecCCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeE-EEc
Q 026389 75 ILNGPEDVCVDRNGVLYTATR-D--------GWIKRLHKNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLL-KVT 143 (239)
Q Consensus 75 ~~~gPe~ia~d~~G~ly~~~~-~--------g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~-~v~ 143 (239)
....|.++++|++|+||+++. . |+|++++++++.+........|+ ||+++++|+ |||+|+..+.+ +++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pN-Gi~~s~dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPN-GIAFSPDGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEE-EEEEETTSSEEEEEETTTTEEEEEE
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccccc-ceEECCcchheeecccccceeEEEe
Confidence 467899999999999998862 1 67999999988877777788999 999999995 89999886654 455
Q ss_pred c--CCc-----eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389 144 E--EGV-----TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS 216 (239)
Q Consensus 144 ~--~g~-----~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~ 216 (239)
. ++. +++.+...+ ..+|+|+++|++|+||+++.. .++|++||+++..+..+.-.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~g~pDG~~vD~~G~l~va~~~-----------------~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGG--PGYPDGLAVDSDGNLWVADWG-----------------GGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSS--SCEEEEEEEBTTS-EEEEEET-----------------TTEEEEEETTSCEEEEEE-S
T ss_pred ccccccceeeeeeEEEcCCC--CcCCCcceEcCCCCEEEEEcC-----------------CCEEEEECCCccEEEEEcCC
Confidence 2 232 233222221 146999999999999999865 58999999995555555555
Q ss_pred CCCcceEEE-cCCCCEEEEEeC
Q 026389 217 LFFANGVAL-SKDEDYLVVCET 237 (239)
Q Consensus 217 l~~pnGia~-s~dg~~lyvadt 237 (239)
...|..++| .+|.+.|||+..
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEEEECCCCCEEEEEeC
Confidence 679999999 588899999864
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=6.5e-14 Score=139.23 Aligned_cols=146 Identities=19% Similarity=0.271 Sum_probs=111.1
Q ss_pred CcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcEEEeeec---------------cCcCccCeEEcCCCC-EEEEeCC
Q 026389 75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLI---------------GGDTLLGITTTQENE-ILVCDAD 136 (239)
Q Consensus 75 ~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~~---------------~~~p~~Gl~~d~~G~-L~v~d~~ 136 (239)
.+..|.++++|+ +|+||+++ .+++|.+++.+|+....... ..+|. |+++|++|+ |||+|..
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence 478999999997 68899888 78899999998876433221 23699 999998774 9999988
Q ss_pred CCeEE-Ec-cCC-ceEEecc------cCC------ccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceE
Q 026389 137 KGLLK-VT-EEG-VTVLASH------VNG------SRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL 200 (239)
Q Consensus 137 ~g~~~-v~-~~g-~~~l~~~------~~g------~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v 200 (239)
++.++ ++ .++ ++.+... ..| ..++.|.++++++ +|++|++|.. +++|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I 707 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQI 707 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeE
Confidence 76665 56 456 6666431 111 2378899999999 6799999976 4688
Q ss_pred EEEeCCCCeEEEec---------------CCCCCcceEEEcCCCCEEEEEeCC
Q 026389 201 LKYDPSLNETSILL---------------DSLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 201 ~~~d~~~~~~~~~~---------------~~l~~pnGia~s~dg~~lyvadt~ 238 (239)
++||+.++.+..+. ..+..|+||++++||++|||+|+.
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~ 760 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE 760 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence 88888776665432 125689999999999999999975
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.53 E-value=6.1e-13 Score=132.37 Aligned_cols=144 Identities=24% Similarity=0.371 Sum_probs=108.2
Q ss_pred cCCcceEEEcC-CCCEEEEe-CCCeEEEEecC-CcEEEeee---------------ccCcCccCeEEcCCCC-EEEEeCC
Q 026389 76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKN-GTWENWKL---------------IGGDTLLGITTTQENE-ILVCDAD 136 (239)
Q Consensus 76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~-G~~~~~~~---------------~~~~p~~Gl~~d~~G~-L~v~d~~ 136 (239)
+..|.+|++++ +|.+|+++ .+++|++++.. |.+..+.. ....|. ||+++++|+ |||+|..
T Consensus 682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~-GIavspdG~~LYVADs~ 760 (1057)
T PLN02919 682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS-GISLSPDLKELYIADSE 760 (1057)
T ss_pred cCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCcc-EEEEeCCCCEEEEEECC
Confidence 46799999998 78999887 77899999863 44433321 124689 999999986 9999998
Q ss_pred CCeEEE-c-cCC-ceEEecc-------------cCC----ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecC
Q 026389 137 KGLLKV-T-EEG-VTVLASH-------------VNG----SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (239)
Q Consensus 137 ~g~~~v-~-~~g-~~~l~~~-------------~~g----~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~ 196 (239)
.+.+++ + .++ ..++... .+| ..+..|.+++++++|++||+|..
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----------------- 823 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----------------- 823 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----------------
Confidence 766654 5 344 4433210 011 24668999999999999999976
Q ss_pred CceEEEEeCCCCeEEEecC--------------CCCCcceEEEcCCCCEEEEEeCC
Q 026389 197 HGKLLKYDPSLNETSILLD--------------SLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 197 ~g~v~~~d~~~~~~~~~~~--------------~l~~pnGia~s~dg~~lyvadt~ 238 (239)
+++|.+||++++.+..+.. .+..|.||++++||+ +||+|+.
T Consensus 824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~ 878 (1057)
T PLN02919 824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTN 878 (1057)
T ss_pred CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECC
Confidence 6899999998888766542 245799999999997 8999975
No 9
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.1e-12 Score=112.17 Aligned_cols=142 Identities=17% Similarity=0.240 Sum_probs=106.0
Q ss_pred cCCcceEEEcCCCCEEEEeCC------------CeEEEEecCCcEEEeeec-cCcCccCeEEcCCC-CEEEEeCCCCeE-
Q 026389 76 LNGPEDVCVDRNGVLYTATRD------------GWIKRLHKNGTWENWKLI-GGDTLLGITTTQEN-EILVCDADKGLL- 140 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~~~------------g~I~~~~~~G~~~~~~~~-~~~p~~Gl~~d~~G-~L~v~d~~~g~~- 140 (239)
...|.+..++++|++|+++.. |.|||++++|+++..... ...|+ ||++++|| .||++|+..+.+
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeEE
Confidence 578999999999999998733 689999988877665555 78899 99999999 799999885544
Q ss_pred EEc-c--CC----ce--EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389 141 KVT-E--EG----VT--VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (239)
Q Consensus 141 ~v~-~--~g----~~--~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~ 211 (239)
+++ . ++ .. +..+... ..|+|+++|.+|++|++... +.++|.+|+|+++.+.
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~----G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~ 248 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEP----GLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLG 248 (307)
T ss_pred EEecCcccCccCCcceEEEccCCC----CCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEE
Confidence 444 2 23 11 1111212 46999999999999974322 1249999999966666
Q ss_pred EecCCCCCcceEEE-cCCCCEEEEEeCC
Q 026389 212 ILLDSLFFANGVAL-SKDEDYLVVCETF 238 (239)
Q Consensus 212 ~~~~~l~~pnGia~-s~dg~~lyvadt~ 238 (239)
.+.-....|..+|| .++.++|||+-+.
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEEecC
Confidence 66555578899998 5788999998653
No 10
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.48 E-value=1.6e-12 Score=108.59 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=110.6
Q ss_pred eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEee-eccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWK-LIGGDTLLGITTTQENEILVCDADKGLLKVTE- 144 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~-~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~- 144 (239)
.......-.+|.+++.++||.+|++. ..|-|-++|+ +|+++.+. ..+.+|+ |+.+++||..|+||...++.++++
T Consensus 54 ~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpk 132 (353)
T COG4257 54 AEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPK 132 (353)
T ss_pred ceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCc
Confidence 33444445789999999999888665 7889999997 68887664 3567899 999999999999999999999994
Q ss_pred CC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcce
Q 026389 145 EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANG 222 (239)
Q Consensus 145 ~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnG 222 (239)
+. ++.+--..+ ..-...|..++|++|++|||... |.-=|+||.++.+++.-. --..|+|
T Consensus 133 t~evt~f~lp~~-~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyG 193 (353)
T COG4257 133 TLEVTRFPLPLE-HADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYG 193 (353)
T ss_pred ccceEEeecccc-cCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcc
Confidence 65 544421111 12234688999999999999875 223378888777776643 3457999
Q ss_pred EEEcCCCCEEEEEe
Q 026389 223 VALSKDEDYLVVCE 236 (239)
Q Consensus 223 ia~s~dg~~lyvad 236 (239)
||.+|||+ ||+++
T Consensus 194 i~atpdGs-vwyas 206 (353)
T COG4257 194 ICATPDGS-VWYAS 206 (353)
T ss_pred eEECCCCc-EEEEe
Confidence 99999998 66664
No 11
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.18 E-value=4.5e-10 Score=98.94 Aligned_cols=157 Identities=23% Similarity=0.290 Sum_probs=101.5
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEecCCcE-EEeee-------ccCcCccCeEEcCC----CCEEEEeCCC-------
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKL-------IGGDTLLGITTTQE----NEILVCDADK------- 137 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~-~~~~~-------~~~~p~~Gl~~d~~----G~L~v~d~~~------- 137 (239)
..|.+|++.|||++|++...|+|++++.+|.. ..+.. .....+ |++++++ +.|||+-...
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCCc
Confidence 57999999999999999999999999977765 33222 123457 9999984 7899986532
Q ss_pred --CeEEEc--cC-C----ceEEecccC--CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC
Q 026389 138 --GLLKVT--EE-G----VTVLASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS 206 (239)
Q Consensus 138 --g~~~v~--~~-g----~~~l~~~~~--g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~ 206 (239)
.++++. .+ . .+++..... ....+....|+++|||.||++-..... .+...+ .....|+|+|++++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~--~~~~~G~ilri~~d 156 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQD--PNSLRGKILRIDPD 156 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCS--TTSSTTEEEEEETT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccc--cccccceEEEeccc
Confidence 344443 22 1 233432211 123455678999999999998765322 110011 12346899999988
Q ss_pred CC-------------eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389 207 LN-------------ETSILLDSLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 207 ~~-------------~~~~~~~~l~~pnGia~s~dg~~lyvadt~ 238 (239)
+. ..++++.++.+|.|++|+|....||++|-+
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence 54 356778899999999999994458998864
No 12
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.17 E-value=6.1e-09 Score=94.63 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=110.0
Q ss_pred cceEeccCCcCCcceEEEcCCCCEEEEeC-CCeEEEEecCC-cEEEe-------ee-ccCcCccCeEEcCC-------CC
Q 026389 67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHKNG-TWENW-------KL-IGGDTLLGITTTQE-------NE 129 (239)
Q Consensus 67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~-~g~I~~~~~~G-~~~~~-------~~-~~~~p~~Gl~~d~~-------G~ 129 (239)
+++.+.++ +..|.+|++.+||++|++.. .|+|++++.++ ..+.. .. ..+..+ ||+++++ +.
T Consensus 21 ~~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~ 98 (454)
T TIGR03606 21 DKKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence 35777777 89999999999999999997 69999998643 22111 11 235577 9999865 36
Q ss_pred EEEEeC----------CCCeEEEc--cC-C----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcC------ccc
Q 026389 130 ILVCDA----------DKGLLKVT--EE-G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG------LHN 186 (239)
Q Consensus 130 L~v~d~----------~~g~~~v~--~~-g----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~------~~~ 186 (239)
|||+-+ ...+.++. .+ . .+.+.........++--.|++++||.|||+-...... ...
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 999842 23455543 22 1 2334332222223456689999999999986553110 000
Q ss_pred ccc-----cce----eecCCceEEEEeCCCC-----------eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389 187 WGL-----DLL----EAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 187 ~~~-----~~~----e~~~~g~v~~~d~~~~-----------~~~~~~~~l~~pnGia~s~dg~~lyvadt~ 238 (239)
..+ +.+ ...-.|+|+|+|+++. ..++..-++.+|.|++|+|+|+ ||++|-+
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~G 249 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQG 249 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecC
Confidence 000 000 0124689999999853 2367788999999999999876 8999865
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.13 E-value=5.9e-09 Score=91.32 Aligned_cols=152 Identities=8% Similarity=0.125 Sum_probs=100.1
Q ss_pred ccccceEeccCCcCCcceEEEcCCCC-EEEEe-CCCeEEEEe--cCCcEEEee--eccCcCccCeEEcCCCC-EEEEeCC
Q 026389 64 DIQSVTRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDAD 136 (239)
Q Consensus 64 ~l~~~~~l~~g~~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~--~~G~~~~~~--~~~~~p~~Gl~~d~~G~-L~v~d~~ 136 (239)
.|..++.+..+ ..|..++++++|+ ||++. .++.|..|+ .+|+++... ...+.|. +++++++|+ ||++...
T Consensus 24 ~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 24 ALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN 100 (330)
T ss_pred ceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC
Confidence 44445555443 5789999999886 78876 678785554 346553222 2346788 999999995 8888766
Q ss_pred CCeEEEc---cCC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeE
Q 026389 137 KGLLKVT---EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NET 210 (239)
Q Consensus 137 ~g~~~v~---~~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~ 210 (239)
.+.+.+. .+| .........+ ...|..++++|+| .+|+++.. .++|..||.++ +.+
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l 161 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHL 161 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcc
Confidence 6655443 355 3222222222 2458899999998 67788754 47788888754 333
Q ss_pred EE------ecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 211 SI------LLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 211 ~~------~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
.. -...-..|.+++|+|||+++||++.
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 21 1122457999999999999999874
No 14
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.08 E-value=4.8e-09 Score=87.98 Aligned_cols=151 Identities=16% Similarity=0.194 Sum_probs=111.9
Q ss_pred eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccC---cCccCeEEcCCCCEEEEeCCCCeE-EE
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGG---DTLLGITTTQENEILVCDADKGLL-KV 142 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~---~p~~Gl~~d~~G~L~v~d~~~g~~-~v 142 (239)
+.....+-.+|.||+..++|.+|+++ .++-|.++|+ +|..+++..... ... .+-.|+.|++|+++.+.+.+ ++
T Consensus 181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsR-riwsdpig~~wittwg~g~l~rf 259 (353)
T COG4257 181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSR-RIWSDPIGRAWITTWGTGSLHRF 259 (353)
T ss_pred eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccccc-ccccCccCcEEEeccCCceeeEe
Confidence 44444556799999999999999887 7889999997 565555543322 223 56678999999999887655 55
Q ss_pred ccCCceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcce
Q 026389 143 TEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG 222 (239)
Q Consensus 143 ~~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnG 222 (239)
++.-.....-...+.. -.|.++-||..|++|++|.. .|.|.||||.+.+.+++.-.-.+++.
T Consensus 260 dPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~-----------------agai~rfdpeta~ftv~p~pr~n~gn 321 (353)
T COG4257 260 DPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEAD-----------------AGAIGRFDPETARFTVLPIPRPNSGN 321 (353)
T ss_pred CcccccceeeeCCCCC-CCcceeeeccCCcEEeeccc-----------------cCceeecCcccceEEEecCCCCCCCc
Confidence 6533222211222221 35899999999999999987 58899999999999988877778888
Q ss_pred EEEcCCCCEEEEEeCC
Q 026389 223 VALSKDEDYLVVCETF 238 (239)
Q Consensus 223 ia~s~dg~~lyvadt~ 238 (239)
+++..-...++.+|.+
T Consensus 322 ~ql~gr~ge~W~~e~g 337 (353)
T COG4257 322 IQLDGRPGELWFTEAG 337 (353)
T ss_pred eeccCCCCceeecccC
Confidence 9998877778888865
No 15
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.6e-08 Score=89.40 Aligned_cols=144 Identities=18% Similarity=0.284 Sum_probs=107.1
Q ss_pred CCcceEEEcCCC-CEEEEeC---CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-ccCCceE
Q 026389 77 NGPEDVCVDRNG-VLYTATR---DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-TEEGVTV 149 (239)
Q Consensus 77 ~gPe~ia~d~~G-~ly~~~~---~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~~~g~~~ 149 (239)
..|.+++++++| .+|+++. +++|..+|.. ++.......+..|. |++++++|+ +||++...+.+.+ +.++..+
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~-~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v 194 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT-GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV 194 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcc-eEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence 389999999976 8999884 6899999975 44444455566788 999999996 9999977666655 4444222
Q ss_pred Eeccc--CCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe---cCCCCCcceE
Q 026389 150 LASHV--NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGV 223 (239)
Q Consensus 150 l~~~~--~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~---~~~l~~pnGi 223 (239)
..... .-..+..|.+++++++| ++|+++..+. .+++.++|..++.+... ...+ .|.++
T Consensus 195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~---------------~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG---------------SNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred eccccccccccCCCCceEEECCCCCEEEEEeccCC---------------CceEEEEeCCCceEEEeccccccC-CCCce
Confidence 21110 11245679999999999 4999986521 37899999988776554 3445 79999
Q ss_pred EEcCCCCEEEEEeC
Q 026389 224 ALSKDEDYLVVCET 237 (239)
Q Consensus 224 a~s~dg~~lyvadt 237 (239)
+++|+|+.+||++.
T Consensus 259 ~~~p~g~~~yv~~~ 272 (381)
T COG3391 259 AVDPAGKAAYVANS 272 (381)
T ss_pred eECCCCCEEEEEec
Confidence 99999999999864
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.03 E-value=2e-08 Score=87.95 Aligned_cols=143 Identities=11% Similarity=0.143 Sum_probs=90.7
Q ss_pred CCcceEEEcCCCC-EEEEe-CCCeEEEEec--CCcEE-Ee--eeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc---cC
Q 026389 77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHK--NGTWE-NW--KLIGGDTLLGITTTQEN-EILVCDADKGLLKVT---EE 145 (239)
Q Consensus 77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~--~G~~~-~~--~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~---~~ 145 (239)
..|.+++++++|+ +|++. .+++|..|+. +|... .. ......|+ +++++++| .+||++...+.+.+. .+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 3689999999885 77776 5788777764 45321 11 12235689 99999998 588999887777664 23
Q ss_pred C-ceEE-ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCC--CCeEEEecC-----
Q 026389 146 G-VTVL-ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSILLD----- 215 (239)
Q Consensus 146 g-~~~l-~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~--~~~~~~~~~----- 215 (239)
| .... .....-..-..|.++++++|| .+|+++.. .+.|..|+.+ +++++.+..
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 4 2211 000000112458999999999 57888753 3566666543 444433221
Q ss_pred ----CCCCcceEEEcCCCCEEEEEeC
Q 026389 216 ----SLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 216 ----~l~~pnGia~s~dg~~lyvadt 237 (239)
+...+.+|+++|||+++|+++.
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecC
Confidence 1224557999999999999864
No 17
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=4.2e-08 Score=88.05 Aligned_cols=141 Identities=19% Similarity=0.227 Sum_probs=103.7
Q ss_pred CCcceEEEcCCCC-EEEEe-CCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCC-CEEEEeCC--CCeEEE-ccCCceE
Q 026389 77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQEN-EILVCDAD--KGLLKV-TEEGVTV 149 (239)
Q Consensus 77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~--~g~~~v-~~~g~~~ 149 (239)
..|.++++.+.|. +|+.. ..+.|..++... +.......+..|. +++++++| .+||++.. .+.+.+ +....++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 6799999998775 99887 568999998432 3333344556899 99999998 79999984 455544 4332222
Q ss_pred EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-----ecCCCCCcceE
Q 026389 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-----LLDSLFFANGV 223 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-----~~~~l~~pnGi 223 (239)
+.....| ..|-+++++++|. +|+++.. .++|..+|.++..+.. .......|.++
T Consensus 153 ~~~~~vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i 212 (381)
T COG3391 153 TATIPVG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGI 212 (381)
T ss_pred EEEEecC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCceE
Confidence 2223333 2468999999995 9999955 5899999987666553 24456789999
Q ss_pred EEcCCCCEEEEEeCC
Q 026389 224 ALSKDEDYLVVCETF 238 (239)
Q Consensus 224 a~s~dg~~lyvadt~ 238 (239)
++++||+.+||++..
T Consensus 213 ~v~~~g~~~yV~~~~ 227 (381)
T COG3391 213 AVDPDGNRVYVANDG 227 (381)
T ss_pred EECCCCCEEEEEecc
Confidence 999999999999865
No 18
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.99 E-value=3e-08 Score=87.76 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=94.2
Q ss_pred cCCcceEEEcCCCC-EEEEe-CCCeEEEEecCC---cEEE----eeeccCcCccCeEEcCCC-CEEEEeCCCCeEEE-c-
Q 026389 76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLHKNG---TWEN----WKLIGGDTLLGITTTQEN-EILVCDADKGLLKV-T- 143 (239)
Q Consensus 76 ~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~G---~~~~----~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v-~- 143 (239)
...|..+.++|+|+ +|+.+ ...+|+.++.+. +++. -...+..|. .++|+++| .+||++...+.+.+ +
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-h~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-HLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE-EEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc-EEEEcCCcCEEEEecCCCCcEEEEee
Confidence 45678899999885 77777 677888877532 3422 124566788 99999998 58999877665543 3
Q ss_pred --cCC-ceEEec---ccCCc-cccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceE--EEEeCCCCeEEEe
Q 026389 144 --EEG-VTVLAS---HVNGS-RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDPSLNETSIL 213 (239)
Q Consensus 144 --~~g-~~~l~~---~~~g~-~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v--~~~d~~~~~~~~~ 213 (239)
.+| .+.+.. ...+. ....+.+|++++|| .+|+++.. .+.| |.+|..+++++.+
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----------------~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----------------SNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----------------TTEEEEEEECTTTTTEEEE
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----------------CCEEEEEEEecCCCceEEE
Confidence 255 433321 11111 22479999999999 58998865 3444 4454566766554
Q ss_pred c---CCCCCcceEEEcCCCCEEEEEeC
Q 026389 214 L---DSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 214 ~---~~l~~pnGia~s~dg~~lyvadt 237 (239)
. .+..+|.+++++|||++|||++-
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 3 34667999999999999999874
No 19
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.97 E-value=1.4e-08 Score=99.12 Aligned_cols=135 Identities=17% Similarity=0.248 Sum_probs=96.1
Q ss_pred eEEEcC-CCCEEEEe-CCCeEEEEec------CCcEEEeee----------cc-----------CcCccCeEEcCCCCEE
Q 026389 81 DVCVDR-NGVLYTAT-RDGWIKRLHK------NGTWENWKL----------IG-----------GDTLLGITTTQENEIL 131 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~-~~g~I~~~~~------~G~~~~~~~----------~~-----------~~p~~Gl~~d~~G~L~ 131 (239)
-+|++| +|.||+++ ...+|+|+.. .+.+++++. .| ..|. |+++|++|.||
T Consensus 411 y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g~lY 489 (1899)
T KOG4659|consen 411 YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMGNLY 489 (1899)
T ss_pred EEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCCcEE
Confidence 499999 99999998 6678999863 233444321 12 3589 99999999999
Q ss_pred EEeCCCCeEEEccCC-ceEEecc---------------cCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceee
Q 026389 132 VCDADKGLLKVTEEG-VTVLASH---------------VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEA 194 (239)
Q Consensus 132 v~d~~~g~~~v~~~g-~~~l~~~---------------~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~ 194 (239)
.+|. ..+..+|.+| ++.+... .....+.+|.+++|+| |+.+|+-|..
T Consensus 490 faD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n--------------- 553 (1899)
T KOG4659|consen 490 FADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN--------------- 553 (1899)
T ss_pred Eecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc---------------
Confidence 9997 4566778888 6655421 1223578999999999 6899999854
Q ss_pred cCCceEEEEeCCCCeEEEec---------------------CCCCCcceEEEcCCCCEEEEEeCC
Q 026389 195 KPHGKLLKYDPSLNETSILL---------------------DSLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 195 ~~~g~v~~~d~~~~~~~~~~---------------------~~l~~pnGia~s~dg~~lyvadt~ 238 (239)
-|++++++ +++++++ ..+..+..|+++++|- |||+||-
T Consensus 554 ----vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD 612 (1899)
T KOG4659|consen 554 ----VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESD 612 (1899)
T ss_pred ----eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEecc
Confidence 34455443 3333222 1245678999999996 9999984
No 20
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.92 E-value=1.6e-07 Score=83.09 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=99.4
Q ss_pred ccccceEeccCCcCCcceEEEcCCC-CEEEEeC----CCeEEEE--ecC-CcEEEe---eeccCcCccCeEEcCCCC-EE
Q 026389 64 DIQSVTRLGEGILNGPEDVCVDRNG-VLYTATR----DGWIKRL--HKN-GTWENW---KLIGGDTLLGITTTQENE-IL 131 (239)
Q Consensus 64 ~l~~~~~l~~g~~~gPe~ia~d~~G-~ly~~~~----~g~I~~~--~~~-G~~~~~---~~~~~~p~~Gl~~d~~G~-L~ 131 (239)
.|...+.+.. ...|..+++++++ .||+... .+.|..+ +.+ |+.+.. ...+..|. .++++++|+ ||
T Consensus 26 ~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~ 102 (345)
T PF10282_consen 26 TLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLY 102 (345)
T ss_dssp EEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEE
T ss_pred CceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEE
Confidence 4444444333 5799999999865 6887764 4677554 455 665433 23567788 899999995 89
Q ss_pred EEeCCCCeEEEc---cCC-ceEEecc---------cCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCC
Q 026389 132 VCDADKGLLKVT---EEG-VTVLASH---------VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPH 197 (239)
Q Consensus 132 v~d~~~g~~~v~---~~g-~~~l~~~---------~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~ 197 (239)
|++...|.+.+. .+| ....... ...+.-.+|..+.++||| .+|++|.. .
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~ 165 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------A 165 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------T
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------C
Confidence 998877766553 457 3222110 111234578899999998 58899865 4
Q ss_pred ceEEEEeCCCCe--EEE----ecCCCCCcceEEEcCCCCEEEEEe
Q 026389 198 GKLLKYDPSLNE--TSI----LLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 198 g~v~~~d~~~~~--~~~----~~~~l~~pnGia~s~dg~~lyvad 236 (239)
.+|+.|+.+... ++. -......|..++|+|||+++||++
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence 577777665433 533 235567899999999999999986
No 21
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.82 E-value=2.3e-07 Score=76.43 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=94.0
Q ss_pred EEcCCCCEEEEe----------CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeE---EEc-cCC-
Q 026389 83 CVDRNGVLYTAT----------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLL---KVT-EEG- 146 (239)
Q Consensus 83 a~d~~G~ly~~~----------~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~---~v~-~~g- 146 (239)
-+||+|+.|.+. ..|.++++-+.++++.+-...+-++ ||++|.+- ..|+.|+..--+ ..+ +.|
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 567889988774 2367788878888877777778999 99999665 689999765333 223 455
Q ss_pred ---ceEEecccCCc--cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCCc
Q 026389 147 ---VTVLASHVNGS--RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFA 220 (239)
Q Consensus 147 ---~~~l~~~~~g~--~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~p 220 (239)
.+.+.+.-..+ ....|+|+++|.+|+||++-.+ .|+|+++||.+|++-. +.-.-...
T Consensus 194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCCce
Confidence 34443322212 2246999999999999999866 6899999999987532 22223455
Q ss_pred ceEEEc-CCCCEEEEEe
Q 026389 221 NGVALS-KDEDYLVVCE 236 (239)
Q Consensus 221 nGia~s-~dg~~lyvad 236 (239)
..+||. ++=+.+||+-
T Consensus 257 tsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEecCCCccEEEEEe
Confidence 778874 4445677763
No 22
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.6e-07 Score=82.51 Aligned_cols=168 Identities=16% Similarity=0.161 Sum_probs=101.0
Q ss_pred cceEeccCCcCCcceEEEcCCCCEEEEeCC-CeEEEEecCC--------cEEEe----------------eeccCcCccC
Q 026389 67 SVTRLGEGILNGPEDVCVDRNGVLYTATRD-GWIKRLHKNG--------TWENW----------------KLIGGDTLLG 121 (239)
Q Consensus 67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~-g~I~~~~~~G--------~~~~~----------------~~~~~~p~~G 121 (239)
..+.+..| +..|.++++.++|.+.+.... |++..+...+ ...++ ......++ +
T Consensus 58 ~~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~ 135 (399)
T COG2133 58 SVEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G 135 (399)
T ss_pred eccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence 35666777 889999999999966666644 7777665221 11111 11222344 5
Q ss_pred eEEcCCCCEEEEeCCCCeEEEc-cCC----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcC-----cccccccc
Q 026389 122 ITTTQENEILVCDADKGLLKVT-EEG----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG-----LHNWGLDL 191 (239)
Q Consensus 122 l~~d~~G~L~v~d~~~g~~~v~-~~g----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~-----~~~~~~~~ 191 (239)
++. ..+.+|++.. ..+.+++ .+. .+++.....+...++--.|+++|||.||++-.+.... .......+
T Consensus 136 ~a~-~~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~ 213 (399)
T COG2133 136 ISE-PGGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV 213 (399)
T ss_pred EEe-ecCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence 554 3445555544 2344444 111 2344444444446778899999999999997663111 01111122
Q ss_pred eeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389 192 LEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239 (239)
Q Consensus 192 ~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~~ 239 (239)
++... ..+...|+.+...++...++.+|.|+++.|....||++|-++
T Consensus 214 ~r~~~-a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 214 LRIDR-AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred eeecc-CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 22222 234455666667788889999999999999966799998653
No 23
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.79 E-value=1.9e-07 Score=91.33 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=98.0
Q ss_pred CcCCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeee--------------------ccCcCccCeEEcC-CCCEEEE
Q 026389 75 ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL--------------------IGGDTLLGITTTQ-ENEILVC 133 (239)
Q Consensus 75 ~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~--------------------~~~~p~~Gl~~d~-~G~L~v~ 133 (239)
++..|.||++|++|.||+.+.. +|.++|.+|-+.++.. ....|. .|+++| ||.|||.
T Consensus 473 ~L~~PkGIa~dk~g~lYfaD~t-~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT-~LaV~Pmdnsl~Vl 550 (1899)
T KOG4659|consen 473 QLIFPKGIAFDKMGNLYFADGT-RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPT-SLAVDPMDNSLLVL 550 (1899)
T ss_pred eeccCCceeEccCCcEEEeccc-EEEEeccCceEEEeccCCCCccCccccccccchhheeeeccc-ceeecCCCCeEEEe
Confidence 4678999999999999998743 7888887775443311 124688 999996 5679999
Q ss_pred eCCCCeEEEccCC-ceEEecc----------------cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecC
Q 026389 134 DADKGLLKVTEEG-VTVLASH----------------VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (239)
Q Consensus 134 d~~~g~~~v~~~g-~~~l~~~----------------~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~ 196 (239)
|. +=++++++++ +.++... .....+..+.+++|.++|.||++++..+-- + -+-.-..
T Consensus 551 d~-nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rri--N---rvr~~~t 624 (1899)
T KOG4659|consen 551 DT-NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRI--N---RVRKLST 624 (1899)
T ss_pred ec-ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhh--h---heEEecc
Confidence 86 3456677777 6655321 122345678899999999999998763210 0 0000111
Q ss_pred CceEEEEeCCCCe-------------EE-Eec--CCCCCcceEEEcCCCCEEEEEeCC
Q 026389 197 HGKLLKYDPSLNE-------------TS-ILL--DSLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 197 ~g~v~~~d~~~~~-------------~~-~~~--~~l~~pnGia~s~dg~~lyvadt~ 238 (239)
+|+++.+...... .+ ..+ ..+..|..+|++|||. +||||.+
T Consensus 625 dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~-v~IAD~g 681 (1899)
T KOG4659|consen 625 DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD-VIIADSG 681 (1899)
T ss_pred CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc-EEEecCC
Confidence 2333332211000 00 011 1256799999999997 8999986
No 24
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.77 E-value=9.1e-08 Score=90.12 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=105.1
Q ss_pred CCcceEEEcC-CCCEEEEe-CCCeEEEEecCC-cEEE-eeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-cCC--ce
Q 026389 77 NGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG-TWEN-WKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG--VT 148 (239)
Q Consensus 77 ~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G-~~~~-~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~g--~~ 148 (239)
.-+-||+||- +..+|.++ ....|.|-..+| +.++ +....+.|- |||+|.-+ ++|++|+....+.+. .+| .+
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence 3466788884 66777666 556677766666 3333 345678899 99999777 699999987777776 577 56
Q ss_pred EEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEc
Q 026389 149 VLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALS 226 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s 226 (239)
+|... .+..|.+|++|+= |+||+||.. . .+-+|-+.+.++..-++++ +++.-|||+.|+
T Consensus 1104 vLf~t----dLVNPR~iv~D~~rgnLYwtDWn----R-----------enPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFYT----DLVNPRAIVVDPIRGNLYWTDWN----R-----------ENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred EEEee----cccCcceEEeecccCceeecccc----c-----------cCCcceeeccCCccceEEeecccCCCCCceeC
Confidence 66532 3556899999995 699999954 2 2456777777766666655 789999999999
Q ss_pred CCCCEEEEEeCC
Q 026389 227 KDEDYLVVCETF 238 (239)
Q Consensus 227 ~dg~~lyvadt~ 238 (239)
|-.+.|-+.|.+
T Consensus 1165 pfs~~LCWvDAG 1176 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAG 1176 (1289)
T ss_pred cccceeeEEecC
Confidence 999999888865
No 25
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.72 E-value=3.2e-07 Score=81.96 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=74.4
Q ss_pred cceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEE-ecCC------cEEEeeec--------cCcCccCeEEcCCCCEE
Q 026389 67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRL-HKNG------TWENWKLI--------GGDTLLGITTTQENEIL 131 (239)
Q Consensus 67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~-~~~G------~~~~~~~~--------~~~p~~Gl~~d~~G~L~ 131 (239)
+.+.+.++ +..|+++++.++| ||+++ ..+|+++ +.+| +.+++... ...++ ++++++||+||
T Consensus 63 ~~~vfa~~-l~~p~Gi~~~~~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~LY 138 (367)
T TIGR02604 63 KSNVFAEE-LSMVTGLAVAVGG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWLY 138 (367)
T ss_pred eeEEeecC-CCCccceeEecCC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCEE
Confidence 34455555 7789999999998 99976 4578888 3322 44444321 23378 99999999999
Q ss_pred EEeCC--------------------CCeEEEccCC--ceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 132 VCDAD--------------------KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 132 v~d~~--------------------~g~~~v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
+++.. .++++++++| .+++.. .++.|+|++++++|++|++|..
T Consensus 139 v~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 139 FNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred EecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCCEEEEccC
Confidence 98762 2366777655 555532 3678999999999999999975
No 26
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.70 E-value=2.8e-07 Score=80.84 Aligned_cols=136 Identities=15% Similarity=0.236 Sum_probs=95.6
Q ss_pred cCCcceEEEcCCC-CEEEEeCCCeEEEEecCCcE-EEee-eccC----cCccCeEEcCCCCEEEEeCCCC----------
Q 026389 76 LNGPEDVCVDRNG-VLYTATRDGWIKRLHKNGTW-ENWK-LIGG----DTLLGITTTQENEILVCDADKG---------- 138 (239)
Q Consensus 76 ~~gPe~ia~d~~G-~ly~~~~~g~I~~~~~~G~~-~~~~-~~~~----~p~~Gl~~d~~G~L~v~d~~~g---------- 138 (239)
.-.|-||+++..| .+|+++.---++.++++|+. +... +..+ ..+ ++.++++|.+|.+|+...
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred cCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeEEEeccccccchhheEEee
Confidence 4579999999865 99999988899999987754 2221 1122 357 899999999999997631
Q ss_pred --------eEEEcc-CC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389 139 --------LLKVTE-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL 207 (239)
Q Consensus 139 --------~~~v~~-~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~ 207 (239)
+++.|+ .. .++|. ..+.+|||++..+|+. +.|++.+ ..|+.||=.++
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLl-----d~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi~g 250 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLL-----DGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWIKG 250 (376)
T ss_pred ecCCCccceEEecCcccchhhhh-----hcccccccccCCCCCCEEEEEeec-----------------cceeeeeEecC
Confidence 222221 11 22222 2478999999999984 6677765 45777775544
Q ss_pred ---CeEEEecCCC-CCcceEEEcCCCCEEEEE
Q 026389 208 ---NETSILLDSL-FFANGVALSKDEDYLVVC 235 (239)
Q Consensus 208 ---~~~~~~~~~l-~~pnGia~s~dg~~lyva 235 (239)
|+.+++++++ .+|..|..+.+|++ +|+
T Consensus 251 ~k~gt~EvFa~~LPG~PDNIR~~~~G~f-WVa 281 (376)
T KOG1520|consen 251 PKAGTSEVFAEGLPGYPDNIRRDSTGHF-WVA 281 (376)
T ss_pred CccCchhhHhhcCCCCCcceeECCCCCE-EEE
Confidence 4448888865 58999999999985 444
No 27
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.67 E-value=9.7e-08 Score=67.34 Aligned_cols=73 Identities=26% Similarity=0.478 Sum_probs=54.6
Q ss_pred ccEEEcCCCCEEEEeCCCCcCcccccc--cceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389 163 DDLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239 (239)
Q Consensus 163 n~l~vd~dG~iy~td~~~~~~~~~~~~--~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~~ 239 (239)
|||+.-...++|+|... +-...++. +.+-+.+.|.|..||+ ++.+++++++.+||||+++||+++|||+++.+
T Consensus 1 NDIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~ 75 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLA 75 (86)
T ss_pred CCEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccC
Confidence 56666666799999765 22222221 2222456788999997 57889999999999999999999999999863
No 28
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.67 E-value=4.1e-06 Score=70.95 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=87.9
Q ss_pred CCcceEEEcCCCC-EEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-cc-CCceEE
Q 026389 77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-TE-EGVTVL 150 (239)
Q Consensus 77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~~-~g~~~l 150 (239)
..|.+++++++|. +|++. .++.|..|+.+ ++..........+. .++++++|+ +|++....+.+++ +. ++ +.+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~ 108 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETR-KVL 108 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCC-eEE
Confidence 4578899999886 66554 78899999964 44433223344577 889999986 6777655555554 43 33 111
Q ss_pred ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC
Q 026389 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~ 230 (239)
.....+ ..+++++++++|.++++.... ...++.||..+++.......-..|+.+++++||+
T Consensus 109 ~~~~~~---~~~~~~~~~~dg~~l~~~~~~----------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 109 AEIPVG---VEPEGMAVSPDGKIVVNTSET----------------TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK 169 (300)
T ss_pred eEeeCC---CCcceEEECCCCCEEEEEecC----------------CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence 111111 236889999999776654331 1345667887666543322234688999999999
Q ss_pred EEEEE
Q 026389 231 YLVVC 235 (239)
Q Consensus 231 ~lyva 235 (239)
+||++
T Consensus 170 ~l~~~ 174 (300)
T TIGR03866 170 ELWVS 174 (300)
T ss_pred EEEEE
Confidence 88775
No 29
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.64 E-value=4.5e-06 Score=70.71 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=82.8
Q ss_pred CCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-cCC-c-eEEecccCCcccc
Q 026389 88 GVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-EEG-V-TVLASHVNGSRIN 160 (239)
Q Consensus 88 G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~~g-~-~~l~~~~~g~~~~ 160 (239)
+.+|++. .++.|..|+. +++..........+. +++++++|+ +|++....+.+.+ + .++ . ..+.. + .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~---~ 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS---G---P 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC---C---C
Confidence 3567554 7899999996 455433334456688 999999996 6777766666655 4 344 2 22211 1 2
Q ss_pred ccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 161 ~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
.+..++++++|+ +|++... .+++..||..+++.......-..|++++++|||+.++++.
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 74 DPELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred CccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe
Confidence 256789999986 6666543 4689999988765433333334689999999999887664
No 30
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.59 E-value=7.4e-07 Score=84.15 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=104.7
Q ss_pred EeccCCcCCcceEEEcC-CCCEEEE-eCCCeEEEEecCCcE--EEeeeccCcCccCeEEcC-CCCEEEEeCCCCe---EE
Q 026389 70 RLGEGILNGPEDVCVDR-NGVLYTA-TRDGWIKRLHKNGTW--ENWKLIGGDTLLGITTTQ-ENEILVCDADKGL---LK 141 (239)
Q Consensus 70 ~l~~g~~~gPe~ia~d~-~G~ly~~-~~~g~I~~~~~~G~~--~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~---~~ 141 (239)
.|....+..|||||+|. ..++|.+ +...+|-.-..||+. ..|....-.|. +|++|. .|+||++|+.+.- -+
T Consensus 1061 ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR-~iv~D~~rgnLYwtDWnRenPkIet 1139 (1289)
T KOG1214|consen 1061 TIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPR-AIVVDPIRGNLYWTDWNRENPKIET 1139 (1289)
T ss_pred eeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcc-eEEeecccCceeeccccccCCccee
Confidence 34444588999999997 4467754 466777666567754 33445567899 999995 4689999987532 23
Q ss_pred EccCC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC
Q 026389 142 VTEEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF 218 (239)
Q Consensus 142 v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~ 218 (239)
.+-|| .++|+.. .+..|||+.+|+.- .|-|.|+. +.|+-...+++--.+++..+|.
T Consensus 1140 s~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAG-----------------t~rleC~~p~g~gRR~i~~~Lq 1198 (1289)
T KOG1214|consen 1140 SSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAG-----------------TKRLECTLPDGTGRRVIQNNLQ 1198 (1289)
T ss_pred eccCCccceEEeec----ccCCCCCceeCcccceeeEEecC-----------------CcceeEecCCCCcchhhhhccc
Confidence 34566 6777653 24579999999986 56678876 4688888887666778889999
Q ss_pred CcceEEEcCCCCEEEEEeCC
Q 026389 219 FANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 219 ~pnGia~s~dg~~lyvadt~ 238 (239)
+|.+|.- +++.+|++|+-
T Consensus 1199 YPF~its--y~~~fY~TDWk 1216 (1289)
T KOG1214|consen 1199 YPFSITS--YADHFYHTDWK 1216 (1289)
T ss_pred Cceeeee--ccccceeeccc
Confidence 9998875 45569999874
No 31
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.58 E-value=7.6e-07 Score=73.41 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=95.6
Q ss_pred ceEEEcC-CCCE-EEEeCCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCC--CEEEEeCCCCeEEEccCC----ceEE
Q 026389 80 EDVCVDR-NGVL-YTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVTEEG----VTVL 150 (239)
Q Consensus 80 e~ia~d~-~G~l-y~~~~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G--~L~v~d~~~g~~~v~~~g----~~~l 150 (239)
||+.|+. .+.| |+....|.|+|+|... +... +...+.|..|+.+--.| +.|++..+.....+.-+| ..++
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~r-a~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~ 96 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYR-AKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVY 96 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEE-EEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeee
Confidence 5557875 4555 4777999999998643 3322 22223333255554333 466665554444444333 2222
Q ss_pred ec---ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcC
Q 026389 151 AS---HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (239)
Q Consensus 151 ~~---~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~ 227 (239)
.+ ......-++.||-.+||+|+.|..-++. + .+.+|.. .|.+|++-+ +++++.+...+..+||++++.
T Consensus 97 ~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-~------~~~le~~-~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~ 167 (310)
T KOG4499|consen 97 RTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-F------GDDLEPI-GGELYSWLA-GHQVELIWNCVGISNGLAWDS 167 (310)
T ss_pred eeccccCchHHhcccccCccCCCCceeeeeecc-c------ccccccc-ccEEEEecc-CCCceeeehhccCCccccccc
Confidence 22 2223345678999999999999887662 1 1233332 467777766 489999999999999999999
Q ss_pred CCCEEEEEeCC
Q 026389 228 DEDYLVVCETF 238 (239)
Q Consensus 228 dg~~lyvadt~ 238 (239)
|.+.+|+.||.
T Consensus 168 d~K~fY~iDsl 178 (310)
T KOG4499|consen 168 DAKKFYYIDSL 178 (310)
T ss_pred cCcEEEEEccC
Confidence 99999999985
No 32
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.53 E-value=1.4e-05 Score=67.68 Aligned_cols=137 Identities=21% Similarity=0.295 Sum_probs=92.2
Q ss_pred CCcceEEEcCCCCEEEEe-CCCeEEEEecCC-c-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC---ceEE
Q 026389 77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG-T-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVL 150 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G-~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g---~~~l 150 (239)
...|||++- ++.||.-. .++..+.+|.+. + ...+ ...+... ||+.| ...||++|....+..+|+.. .+.+
T Consensus 90 ~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~-~y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 90 YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTF-PYPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp --EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE-E-SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred ccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEE-ecCCcce-EEEcC-CCEEEEECCccceEEECCcccceEEEE
Confidence 467888876 45788655 888999999753 2 3333 3346778 99975 34899999988888888643 3333
Q ss_pred ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--C------------
Q 026389 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--S------------ 216 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~------------ 216 (239)
.-...|.+....|.+..- +|.||.---. ..+|.++||.+|++...++ +
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~ 227 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ 227 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence 333577889999999997 8999987754 4689999999999877642 1
Q ss_pred --CCCcceEEEcCCCCEEEEE
Q 026389 217 --LFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 217 --l~~pnGia~s~dg~~lyva 235 (239)
...-||||++++++.+||+
T Consensus 228 ~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 228 PDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp -TTS-EEEEEEETTTTEEEEE
T ss_pred ccCCeeEeEeEeCCCCEEEEE
Confidence 1235999999999999986
No 33
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.44 E-value=1.3e-05 Score=71.70 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=87.9
Q ss_pred ceEeccCCcCCcceEEEcCCCC-EEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c
Q 026389 68 VTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T 143 (239)
Q Consensus 68 ~~~l~~g~~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~ 143 (239)
..++..+. .-+.++++.+||+ +|+.+.+|.|..+|. +++...-...+..|. |+++.+||+ +||++...+.+.+ |
T Consensus 29 ~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 29 VARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEec
Confidence 44555541 1245678889886 889889999999996 556554457788999 999999996 7778766666655 5
Q ss_pred -cCC--ceEEecc-cCC-ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe--EEEecCC
Q 026389 144 -EEG--VTVLASH-VNG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDS 216 (239)
Q Consensus 144 -~~g--~~~l~~~-~~g-~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~--~~~~~~~ 216 (239)
.+. ++.+... ... .+-....++..++....|+.... ..++++.+|....+ .......
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE-
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecc
Confidence 333 3333211 111 12223456666666654443321 25899999865332 2233445
Q ss_pred CCCcceEEEcCCCCEEEEEe
Q 026389 217 LFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 217 l~~pnGia~s~dg~~lyvad 236 (239)
-.+|.+..++|||++++++.
T Consensus 171 g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEE
T ss_pred cccccccccCcccceeeecc
Confidence 57899999999999998863
No 34
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=3.2e-05 Score=67.13 Aligned_cols=132 Identities=14% Similarity=0.254 Sum_probs=89.1
Q ss_pred cCCcceEEEcCCCC-EEEEe-CCCeEEEEe--c-CCcEEEeeec---------cCcCccCeEEcCCCC-EEEEeCCCCeE
Q 026389 76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--K-NGTWENWKLI---------GGDTLLGITTTQENE-ILVCDADKGLL 140 (239)
Q Consensus 76 ~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~--~-~G~~~~~~~~---------~~~p~~Gl~~d~~G~-L~v~d~~~g~~ 140 (239)
-.||+.|+|.|+|. .|+.. -+++|..+. + .|+.+.+... ....- .|.+.+||+ ||+++++...+
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a-aIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA-AIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee-EEEECCCCCEEEEecCCCCeE
Confidence 47999999999986 56665 677776654 3 2554433211 11223 577889997 89999887654
Q ss_pred ---EEccCC--ceEEec-ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389 141 ---KVTEEG--VTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 141 ---~v~~~g--~~~l~~-~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~ 214 (239)
++++++ .+.+.. ..+| .+|.+..+++.|++.+.-.. ...+=.||+.|+.+|+++.+.
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q--------------~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEG---QFPRDFNINPSGRFLIAANQ--------------KSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCC---cCCccceeCCCCCEEEEEcc--------------CCCcEEEEEEcCCCceEEecc
Confidence 556654 444332 2334 57999999999976554332 112357899999999999988
Q ss_pred CCCCCcceEEE
Q 026389 215 DSLFFANGVAL 225 (239)
Q Consensus 215 ~~l~~pnGia~ 225 (239)
....-|..+|+
T Consensus 332 ~~~~~p~Pvcv 342 (346)
T COG2706 332 RYAVVPEPVCV 342 (346)
T ss_pred cccCCCCcEEE
Confidence 87777777775
No 35
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.40 E-value=3.3e-06 Score=74.43 Aligned_cols=143 Identities=15% Similarity=0.231 Sum_probs=81.5
Q ss_pred cCCcceEEEcCCCCEEEEeC--------------CCeEEEEecCCcE--------------EEeeeccCcCccCeEEcCC
Q 026389 76 LNGPEDVCVDRNGVLYTATR--------------DGWIKRLHKNGTW--------------ENWKLIGGDTLLGITTTQE 127 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~~--------------~g~I~~~~~~G~~--------------~~~~~~~~~p~~Gl~~d~~ 127 (239)
...-..|++++||.||++.. .|+|+|++++|++ +.|+.....|. |++||+.
T Consensus 113 ~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~-~~~~d~~ 191 (331)
T PF07995_consen 113 NHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPF-GLAFDPN 191 (331)
T ss_dssp SS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEE-EEEEETT
T ss_pred CCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccc-cEEEECC
Confidence 34556799999999997641 3899999988752 45666677899 9999998
Q ss_pred -CCEEEEeCCCC----eEEEccC---C-c--e--------EEecccCC----------ccccccccEEEcC-------CC
Q 026389 128 -NEILVCDADKG----LLKVTEE---G-V--T--------VLASHVNG----------SRINLADDLIAAT-------DG 171 (239)
Q Consensus 128 -G~L~v~d~~~g----~~~v~~~---g-~--~--------~l~~~~~g----------~~~~~pn~l~vd~-------dG 171 (239)
|+||++|.+.. +.++.+. | . + ........ .+...|.|+.+-. +|
T Consensus 192 tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g 271 (331)
T PF07995_consen 192 TGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRG 271 (331)
T ss_dssp TTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTT
T ss_pred CCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccC
Confidence 99999996642 2222221 1 0 0 00000000 0112344444331 22
Q ss_pred CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-e---EEEecCCCC-CcceEEEcCCCCEEEEEeC
Q 026389 172 SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-E---TSILLDSLF-FANGVALSKDEDYLVVCET 237 (239)
Q Consensus 172 ~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-~---~~~~~~~l~-~pnGia~s~dg~~lyvadt 237 (239)
.++|++. ..++|+++..+.+ + .+.+..... .|.+|+++|||+ |||++.
T Consensus 272 ~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d 324 (331)
T PF07995_consen 272 DLFVADY-----------------GGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-LYVSDD 324 (331)
T ss_dssp EEEEEET-----------------TTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-EEEEE-
T ss_pred cEEEecC-----------------CCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-EEEEEC
Confidence 3333332 3678998877633 2 334455666 789999999997 777764
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2.2e-05 Score=72.26 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=101.8
Q ss_pred CCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CC-c-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-
Q 026389 74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG-T-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG- 146 (239)
Q Consensus 74 g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G-~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g- 146 (239)
+--.+-.+++|.++|... .++.|++|..|+. +. . .+++.......+ .++|.++|+++++-...+.+++. ..|
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 334566789999999755 4458888888886 33 3 344444444556 89999999999998889999987 455
Q ss_pred -ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE--EEecCCCCCc---
Q 026389 147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFA--- 220 (239)
Q Consensus 147 -~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~--~~~~~~l~~p--- 220 (239)
.+.+...-+ ..+++++.+||+++++.+. .|.+..||..+++. .....+...+
T Consensus 280 ~~~~l~~hs~-----~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 280 CVRKLKGHSD-----GISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPV 337 (456)
T ss_pred EEEeeeccCC-----ceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCce
Confidence 555544332 3688999999998888754 58899999998883 3344444555
Q ss_pred ceEEEcCCCCEEEEEe
Q 026389 221 NGVALSKDEDYLVVCE 236 (239)
Q Consensus 221 nGia~s~dg~~lyvad 236 (239)
.-++|+|+++++++.-
T Consensus 338 ~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSAS 353 (456)
T ss_pred eEEEECCCCcEEEEec
Confidence 8899999999988753
No 37
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=5.8e-05 Score=65.56 Aligned_cols=142 Identities=13% Similarity=0.234 Sum_probs=95.1
Q ss_pred cCCcceEEEcCCC-CEEEEeC---CCeE--EEEecC-CcEEEeee---ccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-
Q 026389 76 LNGPEDVCVDRNG-VLYTATR---DGWI--KRLHKN-GTWENWKL---IGGDTLLGITTTQENE-ILVCDADKGLLKVT- 143 (239)
Q Consensus 76 ~~gPe~ia~d~~G-~ly~~~~---~g~I--~~~~~~-G~~~~~~~---~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~- 143 (239)
+..|.-+++++++ .||+... .|.| ++||++ |+.+.... .+..|. =+++|++|+ ||+++...|.+.+.
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence 5789999999977 7998763 5666 456653 77654322 233446 799999996 67777777888776
Q ss_pred --cCC-ceE----EecccCC----ccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389 144 --EEG-VTV----LASHVNG----SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (239)
Q Consensus 144 --~~g-~~~----l~~~~~g----~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~ 211 (239)
.+| ... +.....| +.-.++.-..++|+|+ +++.|-. ..|++.|+.+.|.++
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~ 180 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLT 180 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccc
Confidence 367 322 2222111 1122366788999994 5666754 468888887766654
Q ss_pred Ee----cCCCCCcceEEEcCCCCEEEEE
Q 026389 212 IL----LDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 212 ~~----~~~l~~pnGia~s~dg~~lyva 235 (239)
.. +.....|.-|+|.|+|++.|+.
T Consensus 181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v 208 (346)
T COG2706 181 PADPAEVKPGAGPRHIVFHPNGKYAYLV 208 (346)
T ss_pred cccccccCCCCCcceEEEcCCCcEEEEE
Confidence 33 2345679999999999999875
No 38
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=98.29 E-value=9e-06 Score=75.75 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=51.5
Q ss_pred CccccccccEEEcCCCCEEEEeCCCCcCcc--c-----ccccceeecCCceEEEEeCCCCeEEEecCC--CCCcceEEEc
Q 026389 156 GSRINLADDLIAATDGSIYFSVASTKFGLH--N-----WGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALS 226 (239)
Q Consensus 156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~--~-----~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~--l~~pnGia~s 226 (239)
...|..|++|+++++|+||+..-....... . ....+....++- +..+++.+++++.++.+ -....|++|+
T Consensus 432 ~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fs 510 (524)
T PF05787_consen 432 DNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFS 510 (524)
T ss_pred CCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceEC
Confidence 446889999999999999987544221110 0 001111111112 56678888888887754 3457899999
Q ss_pred CCCCEEEEE
Q 026389 227 KDEDYLVVC 235 (239)
Q Consensus 227 ~dg~~lyva 235 (239)
||+++|||+
T Consensus 511 pDg~tlFvn 519 (524)
T PF05787_consen 511 PDGRTLFVN 519 (524)
T ss_pred CCCCEEEEE
Confidence 999999986
No 39
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=98.25 E-value=9.7e-06 Score=74.37 Aligned_cols=72 Identities=22% Similarity=0.210 Sum_probs=47.6
Q ss_pred ccccccccEEEcCCCCEEEE-eCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC--CCcceEEEcCCCCEEE
Q 026389 157 SRINLADDLIAATDGSIYFS-VASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLV 233 (239)
Q Consensus 157 ~~~~~pn~l~vd~dG~iy~t-d~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l--~~pnGia~s~dg~~ly 233 (239)
.-|+.|++|++|+.|+||+. |.+.. ...++. .+-..+..=|++++++.....+- +.-.|.+|+||++++|
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~~s-~~~~~~------~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF 569 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGSGS-TLRNRF------RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF 569 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCCCC-ccCccc------ccccccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence 34778999999999999985 54421 111111 01124444566677777666542 4668999999999999
Q ss_pred EE
Q 026389 234 VC 235 (239)
Q Consensus 234 va 235 (239)
|+
T Consensus 570 V~ 571 (616)
T COG3211 570 VN 571 (616)
T ss_pred EE
Confidence 86
No 40
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.23 E-value=0.00018 Score=65.82 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=47.5
Q ss_pred CcceEEEcCCCCEEEEe--C-------------------------------CCeEEEEecCCcE------------EEee
Q 026389 78 GPEDVCVDRNGVLYTAT--R-------------------------------DGWIKRLHKNGTW------------ENWK 112 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~--~-------------------------------~g~I~~~~~~G~~------------~~~~ 112 (239)
.-..|+|++||.||++. . .|+|+|+++||++ +.|+
T Consensus 147 ~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA 226 (454)
T TIGR03606 147 NGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFT 226 (454)
T ss_pred CCceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEE
Confidence 34569999999999754 2 2479999998863 5677
Q ss_pred eccCcCccCeEEcCCCCEEEEeCCC
Q 026389 113 LIGGDTLLGITTTQENEILVCDADK 137 (239)
Q Consensus 113 ~~~~~p~~Gl~~d~~G~L~v~d~~~ 137 (239)
.....|. |+++|++|+||+++.+.
T Consensus 227 ~G~RNp~-Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 227 YGHRNPQ-GLAFTPDGTLYASEQGP 250 (454)
T ss_pred Eeccccc-eeEECCCCCEEEEecCC
Confidence 7778899 99999999999999764
No 41
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=7.7e-05 Score=63.08 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=79.7
Q ss_pred eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEec--CCc---E---EEeee----cc-CcCccCeEEcCC-CCEEEE
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK--NGT---W---ENWKL----IG-GDTLLGITTTQE-NEILVC 133 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~--~G~---~---~~~~~----~~-~~p~~Gl~~d~~-G~L~v~ 133 (239)
+++.......+|+|++-.+|.+.+.+ .+++++.++. +++ . +.+.- .. ..-- |+++|+. ++||++
T Consensus 57 r~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E-Gla~D~~~~~L~v~ 135 (248)
T PF06977_consen 57 RRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE-GLAYDPKTNRLFVA 135 (248)
T ss_dssp EEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E-EEEEETTTTEEEEE
T ss_pred EEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE-EEEEcCCCCEEEEE
Confidence 44544446789999998877777766 6888888775 221 1 11110 01 1235 8999976 478887
Q ss_pred eCC--CCeEEEcc--CC--ceEEe--ccc-CCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389 134 DAD--KGLLKVTE--EG--VTVLA--SHV-NGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY 203 (239)
Q Consensus 134 d~~--~g~~~v~~--~g--~~~l~--~~~-~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~ 203 (239)
-.. .+++.+.. .+ ..... ... ....+.-+.++++++. |.+|+-... +.+|+.+
T Consensus 136 kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e-----------------s~~l~~~ 198 (248)
T PF06977_consen 136 KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE-----------------SRLLLEL 198 (248)
T ss_dssp EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT-----------------TTEEEEE
T ss_pred eCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC-----------------CCeEEEE
Confidence 543 35666653 22 22221 111 2223456899999997 788887654 3678888
Q ss_pred eCCCCeEEEe--cC-------CCCCcceEEEcCCCCEEEEEeC
Q 026389 204 DPSLNETSIL--LD-------SLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 204 d~~~~~~~~~--~~-------~l~~pnGia~s~dg~~lyvadt 237 (239)
|.++.-+..+ .. .+..|-|||+++||+...|+|-
T Consensus 199 d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 199 DRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred CCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence 8764322222 22 3578999999999975445553
No 42
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.20 E-value=0.00011 Score=65.10 Aligned_cols=129 Identities=10% Similarity=-0.030 Sum_probs=82.4
Q ss_pred CCEEEEeCC-----CeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-CEEEEeC---------CCCeEEEc--cCC--c
Q 026389 88 GVLYTATRD-----GWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-EILVCDA---------DKGLLKVT--EEG--V 147 (239)
Q Consensus 88 G~ly~~~~~-----g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~---------~~g~~~v~--~~g--~ 147 (239)
.++|+.+.. ++|..+|. ++++......+.+|. |+ +.+|| .||||.. ..+.+.+. .++ .
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 468877743 89999996 455555567788999 97 99998 5999998 55666654 233 2
Q ss_pred eEEeccc--CCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC----Cc
Q 026389 148 TVLASHV--NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF----FA 220 (239)
Q Consensus 148 ~~l~~~~--~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~----~p 220 (239)
..+.... +-.-...++.+++++|| .+|+++.+ +...|-++|..++++..-++.-. +|
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~----------------p~~~V~VvD~~~~kvv~ei~vp~~~~vy~ 154 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS----------------PSPAVGVVDLEGKAFVRMMDVPDCYHIFP 154 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCC----------------CCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 2221110 10124578899999999 58988855 35788899988877654332211 11
Q ss_pred ----ceEEEcCCCCEEEE
Q 026389 221 ----NGVALSKDEDYLVV 234 (239)
Q Consensus 221 ----nGia~s~dg~~lyv 234 (239)
..+.+..||+.+++
T Consensus 155 t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 155 TANDTFFMHCRDGSLAKV 172 (352)
T ss_pred ecCCccEEEeecCceEEE
Confidence 23444566666653
No 43
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.0002 Score=65.81 Aligned_cols=135 Identities=12% Similarity=0.084 Sum_probs=83.2
Q ss_pred eEEEcCCCC-EE-EEeCC--CeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ceE
Q 026389 81 DVCVDRNGV-LY-TATRD--GWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly-~~~~~--g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~~ 149 (239)
...|+|||+ |+ +...+ .+|+.++.+ |+.+.+....+... ..++.+||+ |+++.... .++.++ .++ .+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 349999985 43 44333 469999864 45444433334445 678999996 65543222 366666 445 444
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+... . ......++++|| .|+|+.... +...||++|.++++.+.+........+.+++||
T Consensus 301 lt~~-~----~~~~~p~wSpDG~~I~f~s~~~---------------g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 301 ITRH-R----AIDTEPSWHPDGKSLIFTSERG---------------GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred CccC-C----CCccceEECCCCCEEEEEECCC---------------CCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence 4321 1 123457889999 477764321 235799999988887766433333456799999
Q ss_pred CCEEEEEe
Q 026389 229 EDYLVVCE 236 (239)
Q Consensus 229 g~~lyvad 236 (239)
|++|+++.
T Consensus 361 G~~l~~~~ 368 (448)
T PRK04792 361 GRSMIMVN 368 (448)
T ss_pred CCEEEEEE
Confidence 99998764
No 44
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00032 Score=64.03 Aligned_cols=135 Identities=12% Similarity=0.071 Sum_probs=84.6
Q ss_pred eEEEcCCCC-EE-EEe--CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCC---CCeEEEc-cCC-ceE
Q 026389 81 DVCVDRNGV-LY-TAT--RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly-~~~--~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~---~g~~~v~-~~g-~~~ 149 (239)
..+|.+||+ |+ ++. .+..|+.++.+ |+.+.+....+... ..++.+||+ |+++... ..++.++ ..+ .+.
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence 358999885 43 443 34689999864 55554444444555 788999995 5444322 3466667 445 444
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+... .+ ......++||| .|+|+.... +..+||++|.++++.+.+..+-..-+..+++||
T Consensus 285 Lt~~-~~----~~~~~~~spDG~~i~f~s~~~---------------g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd 344 (435)
T PRK05137 285 LTDS-PA----IDTSPSYSPDGSQIVFESDRS---------------GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPR 344 (435)
T ss_pred ccCC-CC----ccCceeEcCCCCEEEEEECCC---------------CCCeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence 4321 11 13457889999 476664321 235799999988887776543333456889999
Q ss_pred CCEEEEEe
Q 026389 229 EDYLVVCE 236 (239)
Q Consensus 229 g~~lyvad 236 (239)
|+.|++..
T Consensus 345 G~~ia~~~ 352 (435)
T PRK05137 345 GDLIAFTK 352 (435)
T ss_pred CCEEEEEE
Confidence 99987653
No 45
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00022 Score=65.03 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=82.3
Q ss_pred eEEEcCCCC-EEEEe---CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEE-eCC--CCeEEEc-cCC-ceE
Q 026389 81 DVCVDRNGV-LYTAT---RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly~~~---~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~--~g~~~v~-~~g-~~~ 149 (239)
+.+|++||+ |++.+ ....|++++.+ |+.+.+....+... ..++.+||+ |+++ +.. ..++.++ ..| .+.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 348889885 55444 33579999864 45544443334445 678999995 5444 322 2366666 455 444
Q ss_pred EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+... .+ .....++++||+ |+|+.... +...||.+|.++++.+.+...-.....++++||
T Consensus 287 lt~~-~~----~~~~~~~spDG~~l~f~sd~~---------------g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD 346 (433)
T PRK04922 287 LTNH-FG----IDTEPTWAPDGKSIYFTSDRG---------------GRPQIYRVAASGGSAERLTFQGNYNARASVSPD 346 (433)
T ss_pred CccC-CC----CccceEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 4321 11 124678999995 66664220 124799999887777665433334456899999
Q ss_pred CCEEEEEe
Q 026389 229 EDYLVVCE 236 (239)
Q Consensus 229 g~~lyvad 236 (239)
|++++++.
T Consensus 347 G~~Ia~~~ 354 (433)
T PRK04922 347 GKKIAMVH 354 (433)
T ss_pred CCEEEEEE
Confidence 99988753
No 46
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.09 E-value=5.5e-05 Score=65.43 Aligned_cols=99 Identities=18% Similarity=0.247 Sum_probs=61.5
Q ss_pred CeEEcCCCCEEEEeCCC-------------CeEEEc-cCC--ceEE-ecccCCccccccccEEEcCC------CCEEEEe
Q 026389 121 GITTTQENEILVCDADK-------------GLLKVT-EEG--VTVL-ASHVNGSRINLADDLIAATD------GSIYFSV 177 (239)
Q Consensus 121 Gl~~d~~G~L~v~d~~~-------------g~~~v~-~~g--~~~l-~~~~~g~~~~~pn~l~vd~d------G~iy~td 177 (239)
++.+|+.|+|||.|.+. .++.+| .++ ++.+ .....-.+-.+.|+++||.. +.+|+||
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 78888889999998763 356677 444 2222 22111113468999999982 5799999
Q ss_pred CCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC--------------------CcceEEEcC---CCCEEEE
Q 026389 178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--------------------FANGVALSK---DEDYLVV 234 (239)
Q Consensus 178 ~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~--------------------~pnGia~s~---dg~~lyv 234 (239)
++ .+.|.+||..+++...+..+.. ...|+++++ ||++||+
T Consensus 85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 87 3467777777766655543311 246789876 8899998
Q ss_pred Ee
Q 026389 235 CE 236 (239)
Q Consensus 235 ad 236 (239)
.-
T Consensus 148 ~~ 149 (287)
T PF03022_consen 148 HP 149 (287)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.05 E-value=0.00019 Score=67.69 Aligned_cols=138 Identities=13% Similarity=0.171 Sum_probs=102.6
Q ss_pred cCCcceEEEcCCCCEE-EEeCCCeEEEEecCCc--EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ce
Q 026389 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VT 148 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~--~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~ 148 (239)
...-.++++.|||.+. +|..||+|..|+..-. ..+|.+....-. |+.|...|+.+++.+-.|.++.. ... .+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 4455678999999776 6669999999986432 456665555555 89999999999999888988875 233 44
Q ss_pred EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcC
Q 026389 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSK 227 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~ 227 (239)
.+... .| ...+-+++|+.|.|.++.....| .|+.|+.++|++-.++.|-..| .|++|++
T Consensus 429 Tft~P---~p-~QfscvavD~sGelV~AG~~d~F----------------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~ 488 (893)
T KOG0291|consen 429 TFTSP---EP-IQFSCVAVDPSGELVCAGAQDSF----------------EIFVWSVQTGQLLDILSGHEGPVSGLSFSP 488 (893)
T ss_pred eecCC---Cc-eeeeEEEEcCCCCEEEeeccceE----------------EEEEEEeecCeeeehhcCCCCcceeeEEcc
Confidence 44322 12 34578999999999888765333 6899999999988777776666 7899999
Q ss_pred CCCEEEE
Q 026389 228 DEDYLVV 234 (239)
Q Consensus 228 dg~~lyv 234 (239)
+|+.|+-
T Consensus 489 ~~~~LaS 495 (893)
T KOG0291|consen 489 DGSLLAS 495 (893)
T ss_pred ccCeEEe
Confidence 9996653
No 48
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.00065 Score=61.99 Aligned_cols=135 Identities=7% Similarity=0.032 Sum_probs=83.5
Q ss_pred eEEEcCCCC-EE-EEe--CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ceE
Q 026389 81 DVCVDRNGV-LY-TAT--RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly-~~~--~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~~ 149 (239)
+.+|+|||+ |. +.. .+..|+.++.+ |+.+.+....+... ..++.+||+ |+++.... .++.++ ..| .+.
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 281 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 459999985 33 333 34578888754 55444433334445 688999995 55543322 355666 455 554
Q ss_pred EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+.... .......+.|||+ |+|+.... +.-+||++|.++++.+.+..........+++||
T Consensus 282 lt~~~-----~~~~~~~wSPDG~~I~f~s~~~---------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 282 VTDGR-----SNNTEPTWFPDSQNLAYTSDQA---------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred ccCCC-----CCcCceEECCCCCEEEEEeCCC---------------CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 43221 1245788999995 65654321 124799999988877766544444557889999
Q ss_pred CCEEEEEe
Q 026389 229 EDYLVVCE 236 (239)
Q Consensus 229 g~~lyvad 236 (239)
|++++++.
T Consensus 342 G~~Ia~~~ 349 (429)
T PRK03629 342 GKFMVMVS 349 (429)
T ss_pred CCEEEEEE
Confidence 99887653
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.00 E-value=0.00076 Score=55.19 Aligned_cols=134 Identities=20% Similarity=0.236 Sum_probs=87.9
Q ss_pred ceEEEcCCC-CEEEEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEec
Q 026389 80 EDVCVDRNG-VLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLAS 152 (239)
Q Consensus 80 e~ia~d~~G-~ly~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~ 152 (239)
..+.+.+++ .+++++.+|.|..|+.+. ....+........ .+.+.++++++++....+.+.+. .++ ...+..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 133 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence 478888887 566777899999998654 2334433334566 88998888888877655655554 334 222221
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceEEEcCCCCE
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDY 231 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGia~s~dg~~ 231 (239)
. -.....+++++++.++++... .|.+..||..+++...... .-.....++++++++.
T Consensus 134 ~-----~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 134 H-----TDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred C-----CCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence 1 124678999998877776542 4788889987555433332 2335788999999987
Q ss_pred EEEEe
Q 026389 232 LVVCE 236 (239)
Q Consensus 232 lyvad 236 (239)
++++.
T Consensus 192 l~~~~ 196 (289)
T cd00200 192 LLSSS 196 (289)
T ss_pred EEEec
Confidence 77664
No 50
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.97 E-value=0.00059 Score=59.04 Aligned_cols=155 Identities=16% Similarity=0.227 Sum_probs=85.9
Q ss_pred ceEEEcCCCCEEEEeCC-------------CeEEEEec-CCcE-EEee------eccCcCccCeEEcC-C-----CCEEE
Q 026389 80 EDVCVDRNGVLYTATRD-------------GWIKRLHK-NGTW-ENWK------LIGGDTLLGITTTQ-E-----NEILV 132 (239)
Q Consensus 80 e~ia~d~~G~ly~~~~~-------------g~I~~~~~-~G~~-~~~~------~~~~~p~~Gl~~d~-~-----G~L~v 132 (239)
-++.+|+.|+||+-+.. -+|+.||. ++++ +++. .....-+ .+++|. + +.+|+
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence 36789999999976521 28899985 3443 3321 1233445 688884 2 46999
Q ss_pred EeCC-CCeEEEc-cCC--ceEEecc-----------cCCccccc---cccEEEcC---CC-CEEEEeCCCC--cCccc--
Q 026389 133 CDAD-KGLLKVT-EEG--VTVLASH-----------VNGSRINL---ADDLIAAT---DG-SIYFSVASTK--FGLHN-- 186 (239)
Q Consensus 133 ~d~~-~g~~~v~-~~g--~~~l~~~-----------~~g~~~~~---pn~l~vd~---dG-~iy~td~~~~--~~~~~-- 186 (239)
+|.. .|++.+| .+| .+++... ..|..+.. ..|++..+ || .+||.-.++. |.+..
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~ 162 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV 162 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence 9987 5777777 566 4444221 12333333 44566655 55 6888765542 21110
Q ss_pred ---------c-c-----------------------ccceeecCCceEEEEeCCC----CeEEEecC---CCCCcceEEEc
Q 026389 187 ---------W-G-----------------------LDLLEAKPHGKLLKYDPSL----NETSILLD---SLFFANGVALS 226 (239)
Q Consensus 187 ---------~-~-----------------------~~~~e~~~~g~v~~~d~~~----~~~~~~~~---~l~~pnGia~s 226 (239)
. . .-++..-..+.|+++++++ .+.+.++. .+.+|+++.++
T Consensus 163 L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~ 242 (287)
T PF03022_consen 163 LRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID 242 (287)
T ss_dssp HCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred hhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence 0 0 0011122456888899875 35555542 37899999999
Q ss_pred C--CCCEEEEEe
Q 026389 227 K--DEDYLVVCE 236 (239)
Q Consensus 227 ~--dg~~lyvad 236 (239)
+ +|. ||+..
T Consensus 243 ~~~~g~-L~v~s 253 (287)
T PF03022_consen 243 PEGDGY-LWVLS 253 (287)
T ss_dssp T--TS--EEEEE
T ss_pred cccCce-EEEEE
Confidence 9 776 66643
No 51
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.00099 Score=60.55 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=82.9
Q ss_pred ceEEEcCCCC-E-EEEeC--CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ce
Q 026389 80 EDVCVDRNGV-L-YTATR--DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VT 148 (239)
Q Consensus 80 e~ia~d~~G~-l-y~~~~--~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~ 148 (239)
....|+|||+ | |++.. ..+|+.++.+ |+.+.+....+... ..++.+||+ |+++.... .++.++ .++ .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 3458999885 4 34433 3479998864 55554444344445 678999995 54433222 456666 445 44
Q ss_pred EEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcC
Q 026389 149 VLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~ 227 (239)
.+... .+ ......+++|| .|||+... .+..+||++|.++++.+.+..........+++|
T Consensus 281 ~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 281 RVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred EcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence 44321 11 12356789998 57776432 123579999988888766653333334578999
Q ss_pred CCCEEEEEe
Q 026389 228 DEDYLVVCE 236 (239)
Q Consensus 228 dg~~lyvad 236 (239)
||++|+++.
T Consensus 341 dg~~i~~~~ 349 (430)
T PRK00178 341 DGKTLVMVH 349 (430)
T ss_pred CCCEEEEEE
Confidence 999987764
No 52
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.94 E-value=6e-05 Score=53.49 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=44.4
Q ss_pred ceEEEcCC-CCEEEEeC------------------CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCC
Q 026389 80 EDVCVDRN-GVLYTATR------------------DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKG 138 (239)
Q Consensus 80 e~ia~d~~-G~ly~~~~------------------~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g 138 (239)
.+++++++ |.||+++. +||++++|+. ++++++.+....|+ |+++.+|+. |+|+.....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCc
Confidence 36889987 99998752 3899999985 56778888889999 999999996 899987654
Q ss_pred eE
Q 026389 139 LL 140 (239)
Q Consensus 139 ~~ 140 (239)
.+
T Consensus 80 Ri 81 (89)
T PF03088_consen 80 RI 81 (89)
T ss_dssp EE
T ss_pred eE
Confidence 33
No 53
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.92 E-value=0.0015 Score=58.09 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=47.8
Q ss_pred EEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC-EEEEEe
Q 026389 165 LIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED-YLVVCE 236 (239)
Q Consensus 165 l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~-~lyvad 236 (239)
++++++| ++|+.......+.+. .+.+.|+.+|..++++...+..-..|.+|++++||+ +||+++
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk--------~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHK--------TASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred EEEcCCCCEEEEEecCCcccccc--------CCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence 9999997 899954221111111 134689999999988877666567899999999999 999886
No 54
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0013 Score=59.95 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=79.3
Q ss_pred EEEcCCCC-EEEEe-C--CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEcc-CC-ceEE
Q 026389 82 VCVDRNGV-LYTAT-R--DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVTE-EG-VTVL 150 (239)
Q Consensus 82 ia~d~~G~-ly~~~-~--~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~~-~g-~~~l 150 (239)
.+|+|||+ |++.+ . ...|+.++.+ |+...+....+... ..++.+||+ |+++.... .++.++. .+ .+.+
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 48999885 44443 3 3469999864 55544443444555 788999995 55443222 3555663 34 4444
Q ss_pred ecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389 151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg 229 (239)
... .+ ......+++||+ |+|+.... +.-.||.++.++++.+.+..........+++|||
T Consensus 280 t~~-~~----~~~~~~wSpDG~~l~f~s~~~---------------g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG 339 (427)
T PRK02889 280 TQS-SG----IDTEPFFSPDGRSIYFTSDRG---------------GAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDG 339 (427)
T ss_pred CCC-CC----CCcCeEEcCCCCEEEEEecCC---------------CCcEEEEEECCCCceEEEecCCCCcCceEECCCC
Confidence 321 11 124568999994 66653220 1347899998777766554322233457899999
Q ss_pred CEEEEE
Q 026389 230 DYLVVC 235 (239)
Q Consensus 230 ~~lyva 235 (239)
++|+++
T Consensus 340 ~~Ia~~ 345 (427)
T PRK02889 340 KLLAYI 345 (427)
T ss_pred CEEEEE
Confidence 988654
No 55
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0011 Score=60.61 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=80.4
Q ss_pred eEEEcCCCC-EE-EEeCC--CeEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEcc-CC-ceE
Q 026389 81 DVCVDRNGV-LY-TATRD--GWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVTE-EG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly-~~~~~--g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~~-~g-~~~ 149 (239)
..+|+|||+ |+ +.+.+ ..|+.++.++ +.+.+....+... ...+.+||+ |+++.... .++.++. .+ .+.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence 458999985 44 44444 4699998644 4444433333444 678889996 44433222 3556664 34 444
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+... .+ ..+...+.||| .|+++.... +..+|+.+|.+++..+.+..+ .....+.|+||
T Consensus 329 lt~~-~~----~~~~~~~SpdG~~ia~~~~~~---------------~~~~i~~~d~~~~~~~~lt~~-~~~~~p~~spD 387 (435)
T PRK05137 329 ISFG-GG----RYSTPVWSPRGDLIAFTKQGG---------------GQFSIGVMKPDGSGERILTSG-FLVEGPTWAPN 387 (435)
T ss_pred eecC-CC----cccCeEECCCCCEEEEEEcCC---------------CceEEEEEECCCCceEeccCC-CCCCCCeECCC
Confidence 4321 11 23457899999 566665321 124789999887766555443 34677899999
Q ss_pred CCEEEEE
Q 026389 229 EDYLVVC 235 (239)
Q Consensus 229 g~~lyva 235 (239)
|+.|+++
T Consensus 388 G~~i~~~ 394 (435)
T PRK05137 388 GRVIMFF 394 (435)
T ss_pred CCEEEEE
Confidence 9988765
No 56
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.88 E-value=0.0014 Score=59.06 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=83.1
Q ss_pred EEEcCCCC-EEEEe-C--CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ceEE
Q 026389 82 VCVDRNGV-LYTAT-R--DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VTVL 150 (239)
Q Consensus 82 ia~d~~G~-ly~~~-~--~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~~l 150 (239)
.+|++||+ |++.. . ...|+.++.. |+.+.+....+... .+++.+||+ |+++.... .++.++ .++ .+.+
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 47888885 43433 2 3578888864 55554444445566 788999995 66554322 356666 344 4444
Q ss_pred ecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389 151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg 229 (239)
... .+ ......+.+||+ |+|+.... +..+||++|.++++.+.+.........++++|||
T Consensus 274 ~~~-~~----~~~~~~~s~dg~~l~~~s~~~---------------g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 274 TNG-PG----IDTEPSWSPDGKSIAFTSDRG---------------GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCC-CC----CCCCEEECCCCCEEEEEECCC---------------CCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence 321 11 122457788984 66654321 1347999999888877666555556778999999
Q ss_pred CEEEEEe
Q 026389 230 DYLVVCE 236 (239)
Q Consensus 230 ~~lyvad 236 (239)
++++++.
T Consensus 334 ~~i~~~~ 340 (417)
T TIGR02800 334 DLIAFVH 340 (417)
T ss_pred CEEEEEE
Confidence 9888764
No 57
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.83 E-value=0.00079 Score=60.80 Aligned_cols=127 Identities=15% Similarity=0.172 Sum_probs=85.7
Q ss_pred EEEeCCC-eEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-ceEEecccCCccccccccE
Q 026389 91 YTATRDG-WIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDL 165 (239)
Q Consensus 91 y~~~~~g-~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l 165 (239)
.+++.+| .+..++.+| +.+.+....+... .+.++++|+ +.|++....++.++ ++| ++.+-....| ...++
T Consensus 375 vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~----lItdf 449 (668)
T COG4946 375 VIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG----LITDF 449 (668)
T ss_pred EEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc----eeEEE
Confidence 3445455 666676644 5566666777777 899999997 77777777788888 788 6666433333 46789
Q ss_pred EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389 166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 166 ~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
+++++++.+.=.....|- ...+-.||.+++++-.+.+.-.+-..-||+|||++||.-
T Consensus 450 ~~~~nsr~iAYafP~gy~-------------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYY-------------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEcCCceeEEEecCccee-------------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 999998744322111111 235667888877776666555555667899999999874
No 58
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.82 E-value=0.0018 Score=59.06 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=81.7
Q ss_pred eEEEcCCCC-EEE-EeCCC--eEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEE-eCCC--CeEEEc-cCC-ceE
Q 026389 81 DVCVDRNGV-LYT-ATRDG--WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVC-DADK--GLLKVT-EEG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly~-~~~~g--~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~~--g~~~v~-~~g-~~~ 149 (239)
.++|++||+ |++ .+.+| .|+.++.+ |+.+.+....+... ..++.+||+ |+++ +... .++.++ ..| .+.
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 468999885 544 34444 69999864 45544433333345 678899996 4443 3322 356666 345 444
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+.. .+ .+....++.+|| .|+++.... +..+|+.+|.++++.+.+..+. .-...+++||
T Consensus 331 lt~--~g---~~~~~~~~SpDG~~Ia~~~~~~---------------~~~~I~v~d~~~g~~~~Lt~~~-~~~~p~~spd 389 (433)
T PRK04922 331 LTF--QG---NYNARASVSPDGKKIAMVHGSG---------------GQYRIAVMDLSTGSVRTLTPGS-LDESPSFAPN 389 (433)
T ss_pred eec--CC---CCccCEEECCCCCEEEEEECCC---------------CceeEEEEECCCCCeEECCCCC-CCCCceECCC
Confidence 431 22 123468999999 577765321 1237999999888877655432 3445789999
Q ss_pred CCEEEEEe
Q 026389 229 EDYLVVCE 236 (239)
Q Consensus 229 g~~lyvad 236 (239)
|++++++.
T Consensus 390 G~~i~~~s 397 (433)
T PRK04922 390 GSMVLYAT 397 (433)
T ss_pred CCEEEEEE
Confidence 99876653
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.80 E-value=0.0033 Score=51.36 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=86.4
Q ss_pred CcceEEEcCCCCEEEEe-CCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c-cCC--ceEE
Q 026389 78 GPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG--VTVL 150 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~~g--~~~l 150 (239)
...++.+.+++.++++. .+|.|..|+.. ++. ..+........ .+.++++++++++....+.+.+ + ..+ ...+
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 173 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE-EEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence 56778999888777666 59999999875 443 23222333456 8899988887777664555555 4 334 3333
Q ss_pred ecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCC
Q 026389 151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKD 228 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~d 228 (239)
... -.....+.+.++|+ ++++.. .|.+..||..+++..... ..-.....++++++
T Consensus 174 ~~~-----~~~i~~~~~~~~~~~l~~~~~------------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 230 (289)
T cd00200 174 TGH-----TGEVNSVAFSPDGEKLLSSSS------------------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230 (289)
T ss_pred ecC-----ccccceEEECCCcCEEEEecC------------------CCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence 211 12467899999994 555443 378889998765554443 33336788999998
Q ss_pred CCEEEEEe
Q 026389 229 EDYLVVCE 236 (239)
Q Consensus 229 g~~lyvad 236 (239)
+..++.+.
T Consensus 231 ~~~~~~~~ 238 (289)
T cd00200 231 GYLLASGS 238 (289)
T ss_pred CcEEEEEc
Confidence 77665553
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0027 Score=54.38 Aligned_cols=138 Identities=13% Similarity=0.159 Sum_probs=86.1
Q ss_pred CcceEEEcCCCCEE-EEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-----cCC-ceE
Q 026389 78 GPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-----EEG-VTV 149 (239)
Q Consensus 78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-----~~g-~~~ 149 (239)
.-.+|...|-+..+ .++-|..|..||.. -+-+......++|. .|+|++|.++++......+++. ..| .+.
T Consensus 102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 34567777755555 44477788888742 11122334456664 8999999988887666555543 234 444
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC----CCcceEE
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL----FFANGVA 224 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l----~~pnGia 224 (239)
+.-.. ......++|.+.+|| .|.++... +.++.+|.=+|.+..-.... ..|-+.+
T Consensus 180 f~i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 180 FSITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred EccCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 43211 233457899999999 56777654 56777776666643333333 3445788
Q ss_pred EcCCCCEEEEEeC
Q 026389 225 LSKDEDYLVVCET 237 (239)
Q Consensus 225 ~s~dg~~lyvadt 237 (239)
|+||+++++..+.
T Consensus 240 ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 240 FTPDSKFVLSGSD 252 (311)
T ss_pred ECCCCcEEEEecC
Confidence 9999999887654
No 61
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.78 E-value=4.6e-05 Score=42.05 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.9
Q ss_pred ccccccEEEcCCCCEEEEeCC
Q 026389 159 INLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 159 ~~~pn~l~vd~dG~iy~td~~ 179 (239)
|+.|.|++++++|+||++|..
T Consensus 1 f~~P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECC
T ss_pred CcCCcEEEEeCCCCEEEEECC
Confidence 467999999999999999965
No 62
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.78 E-value=0.0022 Score=58.86 Aligned_cols=134 Identities=11% Similarity=0.130 Sum_probs=80.8
Q ss_pred eEEEcCCCC-EEE-EeCCC--eEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEE-eCC--CCeEEEc-cCC-ceE
Q 026389 81 DVCVDRNGV-LYT-ATRDG--WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly~-~~~~g--~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~--~g~~~v~-~~g-~~~ 149 (239)
..+|+|||+ |++ .+.+| .|+.++.+ ++.+.+........ ..++.+||+ |+++ +.. ..++.++ .+| .+.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~-~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT-EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 468999886 554 44555 59999864 45544433333445 678889996 4443 322 2355666 445 444
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+. .++. .....++++|| .||++.... +..+|+++|.++++.+.+... ..-...+++||
T Consensus 345 Lt--~~g~---~~~~~~~SpDG~~l~~~~~~~---------------g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spd 403 (448)
T PRK04792 345 LT--FEGE---QNLGGSITPDGRSMIMVNRTN---------------GKFNIARQDLETGAMQVLTST-RLDESPSVAPN 403 (448)
T ss_pred Ee--cCCC---CCcCeeECCCCCEEEEEEecC---------------CceEEEEEECCCCCeEEccCC-CCCCCceECCC
Confidence 42 1221 12346889999 577765431 134799999998887766533 12223479999
Q ss_pred CCEEEEEe
Q 026389 229 EDYLVVCE 236 (239)
Q Consensus 229 g~~lyvad 236 (239)
|+.|+++.
T Consensus 404 G~~I~~~~ 411 (448)
T PRK04792 404 GTMVIYST 411 (448)
T ss_pred CCEEEEEE
Confidence 99887654
No 63
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.78 E-value=0.0022 Score=58.51 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=89.3
Q ss_pred ceEEEcCCCCEEEEeCCCeEEEEecCC-cE--EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEecccC
Q 026389 80 EDVCVDRNGVLYTATRDGWIKRLHKNG-TW--ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASHVN 155 (239)
Q Consensus 80 e~ia~d~~G~ly~~~~~g~I~~~~~~G-~~--~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~~~ 155 (239)
.+++.+..|.+|+...|..+.+++..+ .. ....+.+..|. |+++..+|.+.+.....+++.+. ..+...+--.
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~-- 443 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG-- 443 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEecCcEEEEecCCcceeeccc--
Confidence 356666668888888888888886422 11 12246678899 99999988655554456676665 3333322111
Q ss_pred CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE---EEecCCCCCcceEEEcCCCCEE
Q 026389 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFFANGVALSKDEDYL 232 (239)
Q Consensus 156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~---~~~~~~l~~pnGia~s~dg~~l 232 (239)
..+..+++.++|....-... .|+|+.|...+.++ .+..+....+.-|++||||.+|
T Consensus 444 ----y~~s~vAv~~~~~~vaVGG~-----------------Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 444 ----YESSAVAVSPDGSEVAVGGQ-----------------DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred ----cccceEEEcCCCCEEEEecc-----------------cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 23678999999964433222 47788887765443 2334555677899999999999
Q ss_pred EEEeCCC
Q 026389 233 VVCETFK 239 (239)
Q Consensus 233 yvadt~~ 239 (239)
.++|..|
T Consensus 503 a~~Da~r 509 (603)
T KOG0318|consen 503 AAGDASR 509 (603)
T ss_pred EEeccCC
Confidence 9888654
No 64
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.74 E-value=0.00083 Score=62.79 Aligned_cols=153 Identities=19% Similarity=0.347 Sum_probs=85.7
Q ss_pred CcceEEE---cC-CCCEEEEe--CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCC-C-eEEEc-cC---
Q 026389 78 GPEDVCV---DR-NGVLYTAT--RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK-G-LLKVT-EE--- 145 (239)
Q Consensus 78 gPe~ia~---d~-~G~ly~~~--~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~-g-~~~v~-~~--- 145 (239)
.=|.+++ ++ .+.+|.++ .++.||||-++...... .+.. +-....+|+|||+-... + .-.+. ..
T Consensus 245 ~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~----~~~~-~~~ll~~GtLyaak~~~~g~~~Wv~L~~~~~ 319 (524)
T PF05787_consen 245 AHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWDPG----DRAA-NRDLLDEGTLYAAKFNQDGTGEWVPLGHGQG 319 (524)
T ss_pred cccceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCCCc----ccch-hhhhhhCCEeceEEECCCCcEEEEECCCccc
Confidence 4456676 54 34678776 67889998765543210 0111 22223567888875432 2 11222 10
Q ss_pred ------C----ceEEe------cccCCccccccccEEEcCC-CCEEEEeCCCCcCccc-c-cccceeecCCceEEEEeCC
Q 026389 146 ------G----VTVLA------SHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHN-W-GLDLLEAKPHGKLLKYDPS 206 (239)
Q Consensus 146 ------g----~~~l~------~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~-~-~~~~~e~~~~g~v~~~d~~ 206 (239)
+ ..++. ......++..|.|+++++. |.+||+.++..-.... . ..........|+|++|+++
T Consensus 320 ~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~ 399 (524)
T PF05787_consen 320 GLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD 399 (524)
T ss_pred ccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc
Confidence 1 11111 1112347899999999996 7999987663311000 0 0011124467999999987
Q ss_pred CC-------eEEEec------------------CCCCCcceEEEcCCCCEEEEEe
Q 026389 207 LN-------ETSILL------------------DSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 207 ~~-------~~~~~~------------------~~l~~pnGia~s~dg~~lyvad 236 (239)
++ +.+.++ ..+..|.+|+|+++|+ |||+|
T Consensus 400 ~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~e 453 (524)
T PF05787_consen 400 GNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQE 453 (524)
T ss_pred CCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEe
Confidence 65 333332 1267899999999999 55544
No 65
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.74 E-value=0.00014 Score=65.13 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=56.2
Q ss_pred CEEEEeCCCCeEEEccCC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCC
Q 026389 129 EILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS 206 (239)
Q Consensus 129 ~L~v~d~~~g~~~v~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~ 206 (239)
-+||+++..+.+.+-+.. .+++.....+. ....++.+.+||+ +|+++. .|.|.++|..
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~Dgr~~yv~~r------------------dg~vsviD~~ 66 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGG--APHAGLKFSPDGRYLYVANR------------------DGTVSVIDLA 66 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT-SSEEEEEET------------------TSEEEEEETT
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCC--CceeEEEecCCCCEEEEEcC------------------CCeEEEEECC
Confidence 356788777777654221 23322211121 1245678899995 888863 3789999999
Q ss_pred CCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 207 LNETSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 207 ~~~~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
++++..-+.....|.|+++|+||+++|+++.
T Consensus 67 ~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~ 97 (369)
T PF02239_consen 67 TGKVVATIKVGGNPRGIAVSPDGKYVYVANY 97 (369)
T ss_dssp SSSEEEEEE-SSEEEEEEE--TTTEEEEEEE
T ss_pred cccEEEEEecCCCcceEEEcCCCCEEEEEec
Confidence 8887655555678999999999999999863
No 66
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00077 Score=55.01 Aligned_cols=100 Identities=18% Similarity=0.339 Sum_probs=67.4
Q ss_pred CcCccCeEEcCCCCEEEEeCCCCeEEEccCC---ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccce
Q 026389 116 GDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (239)
Q Consensus 116 ~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g---~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~ 192 (239)
|.-. |++-|. .+|+.+|...-+...|+.- ...+.-..+|.|....|.+..= ||.+|.--..
T Consensus 131 GeGW-gLt~d~-~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~------------- 194 (262)
T COG3823 131 GEGW-GLTSDD-KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ------------- 194 (262)
T ss_pred Ccce-eeecCC-cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee-------------
Confidence 4555 777653 2588787665566666422 2222224578888888888764 6777765433
Q ss_pred eecCCceEEEEeCCCCeEEEecC--C-----------CCCcceEEEcCCCCEEEEE
Q 026389 193 EAKPHGKLLKYDPSLNETSILLD--S-----------LFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 193 e~~~~g~v~~~d~~~~~~~~~~~--~-----------l~~pnGia~s~dg~~lyva 235 (239)
..++.|+||++|++...++ + ..-+||||..++++.+|++
T Consensus 195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 3578999999998876643 2 2357999999999889986
No 67
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.70 E-value=0.0028 Score=57.78 Aligned_cols=149 Identities=13% Similarity=0.185 Sum_probs=76.0
Q ss_pred eEEEcCCCC-EEEEe-C--CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCC---eEEEcc-CC-ceE
Q 026389 81 DVCVDRNGV-LYTAT-R--DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKG---LLKVTE-EG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly~~~-~--~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g---~~~v~~-~g-~~~ 149 (239)
+++|+|||+ |++.+ . +.+|+.++.. |+.+.+....+.-. ..++.+||+ |+++....| ++.++. .+ .+.
T Consensus 208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~ 286 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ 286 (429)
T ss_pred cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe
Confidence 359999985 43333 2 3479999864 44444443344555 788999996 555433333 445553 44 444
Q ss_pred EecccCCccccccccEEEcCCCC-EEEEeCCC-C---cCcc--c----------cc------ccceeecCCceEEEEeCC
Q 026389 150 LASHVNGSRINLADDLIAATDGS-IYFSVAST-K---FGLH--N----------WG------LDLLEAKPHGKLLKYDPS 206 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~-~---~~~~--~----------~~------~~~~e~~~~g~v~~~d~~ 206 (239)
+... .+ .....++++||+ |+|+.... . |... . +. ...+......+++++|..
T Consensus 287 lt~~-~~----~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~ 361 (429)
T PRK01742 287 LTSG-AG----NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDNVVKQDLT 361 (429)
T ss_pred eccC-CC----CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCCEEEEECC
Confidence 4321 11 234678888884 66653211 1 0000 0 00 000100111345566666
Q ss_pred CCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 207 LNETSILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 207 ~~~~~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
+++.+.+.... .-..++|+|||+.|+++.
T Consensus 362 ~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 362 SGSTEVLSSTF-LDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCCeEEecCCC-CCCCceECCCCCEEEEEE
Confidence 66555444332 235677788887776654
No 68
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.69 E-value=0.0078 Score=49.57 Aligned_cols=108 Identities=20% Similarity=0.327 Sum_probs=67.6
Q ss_pred EEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEe-c-ccCCc
Q 026389 83 CVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA-S-HVNGS 157 (239)
Q Consensus 83 a~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~-~-~~~g~ 157 (239)
++..+|.+|+++.++.|+.+|. +|+.. |......+......-.++++|++.....++.++ .+| ...-. . ..+..
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVL-WRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEE-EEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEE-EEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 4445789999999999999996 77643 333323332033234577899998766788888 788 43321 1 11222
Q ss_pred cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 158 ~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
........+++ ++.+|+.... |.|+.+|+++|++
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~------------------g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 111 GVRSSSSPAVD-GDRLYVGTSS------------------GKLVALDPKTGKL 144 (238)
T ss_dssp STB--SEEEEE-TTEEEEEETC------------------SEEEEEETTTTEE
T ss_pred ccccccCceEe-cCEEEEEecc------------------CcEEEEecCCCcE
Confidence 22333444544 4577887753 7899999988876
No 69
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.65 E-value=0.0052 Score=52.46 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=91.2
Q ss_pred CcceEEEcCCCCEEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389 78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG--VTVL 150 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g--~~~l 150 (239)
.-.+..+-.|+.|.+++.|.+...||. .|+ ++.|....+..+ +|.+.+ +++.||+-.-...-++. ..| ++.+
T Consensus 147 ylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF 225 (343)
T KOG0286|consen 147 YLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF 225 (343)
T ss_pred eeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence 344556666999999999999999995 454 556666667777 888888 88999986655555553 455 5554
Q ss_pred ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEecC--CCCCcceEEEcC
Q 026389 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLD--SLFFANGVALSK 227 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~~~--~l~~pnGia~s~ 227 (239)
.... .-.|.+.+-|+|.-+.|.+. .+..-.||... .++.+... .....+.++||.
T Consensus 226 ~ghe-----sDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 226 EGHE-----SDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred cccc-----cccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 3322 23689999999998888664 34444455543 34444432 234568999999
Q ss_pred CCCEEEE
Q 026389 228 DEDYLVV 234 (239)
Q Consensus 228 dg~~lyv 234 (239)
.|++||.
T Consensus 284 SGRlLfa 290 (343)
T KOG0286|consen 284 SGRLLFA 290 (343)
T ss_pred cccEEEe
Confidence 9998875
No 70
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.64 E-value=0.0048 Score=56.26 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=81.0
Q ss_pred EEEcCCCC--EEEEe-C--CCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCC---CCeEEEc-cCC-ceE
Q 026389 82 VCVDRNGV--LYTAT-R--DGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTV 149 (239)
Q Consensus 82 ia~d~~G~--ly~~~-~--~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~---~g~~~v~-~~g-~~~ 149 (239)
..|+|||+ +|..+ . +..|+.++. .|+.+.+....+... ...+.+||+ |+++... ..++.++ ..| .+.
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence 38889885 66544 3 467999986 455555544444444 566889994 5544322 2456666 445 455
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+... .+ .-....+.||| .|||+.... +...||++|.++++.+.+...... + .++|||
T Consensus 272 LT~~-~~----~d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPD 329 (419)
T PRK04043 272 ITNY-PG----IDVNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTY 329 (419)
T ss_pred cccC-CC----ccCccEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEeCccCCCc-C-ceECCC
Confidence 4322 11 11234799999 688886431 235899999999888666542211 3 489999
Q ss_pred CCEEEEE
Q 026389 229 EDYLVVC 235 (239)
Q Consensus 229 g~~lyva 235 (239)
|++|.++
T Consensus 330 G~~Ia~~ 336 (419)
T PRK04043 330 KNYIVYS 336 (419)
T ss_pred CCEEEEE
Confidence 9988654
No 71
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.55 E-value=0.0042 Score=56.68 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=70.1
Q ss_pred eEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-E-EEEeCC-C-CeEEEc-cCC-ceEEecccCCccccccccEEEcCC
Q 026389 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-I-LVCDAD-K-GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (239)
Q Consensus 98 ~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L-~v~d~~-~-g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~d 170 (239)
+|+.+|.+|. .+.+........ ..++.+||+ | |+.... . .++..+ ..| .+.+.. ..+ .....+++||
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCC
Confidence 5666666653 233322222344 788999996 3 333322 2 344445 445 444432 222 1235799999
Q ss_pred C-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEE
Q 026389 171 G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVV 234 (239)
Q Consensus 171 G-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyv 234 (239)
| .|+++.... +...||.+|.++++.+.+..+-......+|+|||+.|++
T Consensus 254 G~~La~~~~~~---------------g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f 303 (429)
T PRK03629 254 GSKLAFALSKT---------------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAY 303 (429)
T ss_pred CCEEEEEEcCC---------------CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEE
Confidence 9 577764321 124699999998888877665455678899999997744
No 72
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.54 E-value=0.0091 Score=53.73 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=80.7
Q ss_pred eEEEcCCCC-EEEE-eCC--CeEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEE-eCC--CCeEEEcc-CC-ceE
Q 026389 81 DVCVDRNGV-LYTA-TRD--GWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVTE-EG-VTV 149 (239)
Q Consensus 81 ~ia~d~~G~-ly~~-~~~--g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~--~g~~~v~~-~g-~~~ 149 (239)
.++|++||. |++. +.+ ..|+.++.++ +.+.+....+... ...+.++|+ |+++ +.. ..++.++. .+ .+.
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDT-EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR 316 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCC-CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 468999885 6544 333 4699998653 4443333223334 567788885 5444 322 13556663 44 443
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
+... + ......++++|| .|+++.... +..+|+.+|.+++..+.+... ......+|+||
T Consensus 317 l~~~--~---~~~~~~~~spdg~~i~~~~~~~---------------~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spd 375 (417)
T TIGR02800 317 LTFR--G---GYNASPSWSPDGDLIAFVHREG---------------GGFNIAVMDLDGGGERVLTDT-GLDESPSFAPN 375 (417)
T ss_pred eecC--C---CCccCeEECCCCCEEEEEEccC---------------CceEEEEEeCCCCCeEEccCC-CCCCCceECCC
Confidence 3321 1 234567899998 466665431 235899999988777666543 23455689999
Q ss_pred CCEEEEEeC
Q 026389 229 EDYLVVCET 237 (239)
Q Consensus 229 g~~lyvadt 237 (239)
|+.|+++..
T Consensus 376 g~~l~~~~~ 384 (417)
T TIGR02800 376 GRMILYATT 384 (417)
T ss_pred CCEEEEEEe
Confidence 998877643
No 73
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.52 E-value=0.0055 Score=55.87 Aligned_cols=118 Identities=14% Similarity=0.053 Sum_probs=69.9
Q ss_pred CeEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-EEEE-eCC-C-CeEEEc-cCC-ceEEecccCCccccccccEEEcC
Q 026389 97 GWIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVC-DAD-K-GLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT 169 (239)
Q Consensus 97 g~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~-~-g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~ 169 (239)
.+|+.+|.+|. .+.+........ ..++.+||+ |+.+ ... . .++..+ ..| .+.+.. ..+. ...+++.|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g~----~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRGH----NGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCCc----cCceeECC
Confidence 36666666664 222222223345 788999996 4333 221 1 244455 455 444432 2331 23689999
Q ss_pred CCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389 170 DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 170 dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
||+ |+++.... +.-+||.+|.++++.+.+..+-......+|+|||+.|+++
T Consensus 258 DG~~La~~~~~~---------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~ 309 (429)
T PRK01742 258 DGSRLAFASSKD---------------GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFT 309 (429)
T ss_pred CCCEEEEEEecC---------------CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEE
Confidence 995 66654321 1236899999888877776554556789999999987654
No 74
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.52 E-value=0.0018 Score=56.00 Aligned_cols=136 Identities=16% Similarity=0.209 Sum_probs=79.0
Q ss_pred cceEEEcCCCCEEEEe-CCCeEEEEecCCcE-EEee---------eccCcCccCeEEcCCCC-EEEEeCCC----CeEEE
Q 026389 79 PEDVCVDRNGVLYTAT-RDGWIKRLHKNGTW-ENWK---------LIGGDTLLGITTTQENE-ILVCDADK----GLLKV 142 (239)
Q Consensus 79 Pe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~-~~~~---------~~~~~p~~Gl~~d~~G~-L~v~d~~~----g~~~v 142 (239)
-.++++ .++.+|+.. .-..+-.++++-+. ..|. +..-+-+ ||++. +|+ -||+--+. +-++-
T Consensus 105 iHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLN-GlA~~-~g~p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 105 AHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLN-GMALD-DGEPRYVTALSQSDVADGWRE 181 (335)
T ss_pred hhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeec-ceeee-CCeEEEEEEeeccCCcccccc
Confidence 345666 344555433 44556566554332 1221 2234678 99995 565 67764221 22222
Q ss_pred c-cCC--c-eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC
Q 026389 143 T-EEG--V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF 218 (239)
Q Consensus 143 ~-~~g--~-~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~ 218 (239)
. .+| + .+-..+.--..+.+|..-... +|++||+|+. .|.+.++|+++|+.+.+..--.
T Consensus 182 ~~~~gG~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG 243 (335)
T TIGR03032 182 GRRDGGCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPG 243 (335)
T ss_pred cccCCeEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCC
Confidence 2 222 1 110000000123344444443 6899999987 6899999999899988887778
Q ss_pred CcceEEEcCCCCEEEEEeC
Q 026389 219 FANGVALSKDEDYLVVCET 237 (239)
Q Consensus 219 ~pnGia~s~dg~~lyvadt 237 (239)
+|.|++|. |++++|+=|
T Consensus 244 ~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 244 FTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CCccccee--CCEEEEEec
Confidence 99999998 998888644
No 75
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.51 E-value=0.0054 Score=55.93 Aligned_cols=118 Identities=9% Similarity=0.047 Sum_probs=69.1
Q ss_pred CeEEEEecCCcE-EEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ceEEecccCCccccccccEEEcC
Q 026389 97 GWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT 169 (239)
Q Consensus 97 g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~ 169 (239)
.+|+.+|.+|+. +.+......-. ..++.+||+ |+.+.... .++..+ ..| .+.+.. ..+ .....++.|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECC
Confidence 356666666642 22222223334 778889995 44433222 255556 455 444432 222 124678999
Q ss_pred CC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389 170 DG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 170 dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
|| .|+++-.. .+.-+||.+|.++++.+.+...-..-...+|+|||++|+++
T Consensus 250 DG~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~ 301 (427)
T PRK02889 250 DGRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFT 301 (427)
T ss_pred CCCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEE
Confidence 99 57776432 12357999998877777665433334567899999987654
No 76
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.012 Score=50.40 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=84.2
Q ss_pred eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEe--cCCcEEEeee---------c-cCcCccCeEEcCCC-CEEEEe
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLH--KNGTWENWKL---------I-GGDTLLGITTTQEN-EILVCD 134 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~--~~G~~~~~~~---------~-~~~p~~Gl~~d~~G-~L~v~d 134 (239)
++++...+..||+|++-.+|...+++ .+++++.+. +++.+..... . ...-- |++.|+.+ +||++-
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfE-GlA~d~~~~~l~~aK 199 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFE-GLAWDPVDHRLFVAK 199 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCce-eeecCCCCceEEEEE
Confidence 55555557889999998666555666 777777654 4443221110 0 01123 89999655 799987
Q ss_pred CCC--CeEEEc--cCC--ceEEecccCCc--cccccccEEEcCC-CCEEE-EeCCCCcCcccccccceeecCCceEEEEe
Q 026389 135 ADK--GLLKVT--EEG--VTVLASHVNGS--RINLADDLIAATD-GSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYD 204 (239)
Q Consensus 135 ~~~--g~~~v~--~~g--~~~l~~~~~g~--~~~~pn~l~vd~d-G~iy~-td~~~~~~~~~~~~~~~e~~~~g~v~~~d 204 (239)
..+ +++.++ ++. ........... -+.-..++.+++. |.+++ +|.+ ++|..+|
T Consensus 200 Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES------------------r~l~Evd 261 (316)
T COG3204 200 ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES------------------RRLLEVD 261 (316)
T ss_pred ccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCC------------------ceEEEEe
Confidence 543 566665 223 11111111111 1233455666653 44443 4433 5667777
Q ss_pred CCCCeEEEe---------cCCCCCcceEEEcCCCCEEEEEeCC
Q 026389 205 PSLNETSIL---------LDSLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 205 ~~~~~~~~~---------~~~l~~pnGia~s~dg~~lyvadt~ 238 (239)
.++.-+..+ -.++..|.|||.+++|..-.|+|.+
T Consensus 262 ~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 262 LSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred cCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 653322222 2346789999999999855566654
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.011 Score=50.66 Aligned_cols=121 Identities=13% Similarity=0.229 Sum_probs=78.2
Q ss_pred cCCcceEEEcCCCCEEEEe-CCCeEEEEec----CCcEEEeeec---cCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cC
Q 026389 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHK----NGTWENWKLI---GGDTLLGITTTQENE-ILVCDADKGLLKVT-EE 145 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~----~G~~~~~~~~---~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~ 145 (239)
..++--.|+||+|.++... ....|..+|. .|-.+++.-. ..+-. +|.|.+||+ |+++....-++.+| -+
T Consensus 140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 3455567999999998554 5557877773 2323333222 23445 899999996 56666555566677 47
Q ss_pred C--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389 146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS 216 (239)
Q Consensus 146 g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~ 216 (239)
| ...+... . ...+.|-+..+.|||...++.+. .|+|+.|+..+++......+
T Consensus 219 G~~~~tfs~~-~-~~~~~~~~a~ftPds~Fvl~gs~-----------------dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 219 GTVKSTFSGY-P-NAGNLPLSATFTPDSKFVLSGSD-----------------DGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CcEeeeEeec-c-CCCCcceeEEECCCCcEEEEecC-----------------CCcEEEEEcCCCcEeeEecC
Confidence 7 3333221 1 12345678899999998888765 68999999887765544443
No 78
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.0066 Score=54.59 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=45.4
Q ss_pred CcceEEEcCCCCEEEEe--C------------CCeEEEEecCCc---------EEEeeeccCcCccCeEEcCC-CCEEEE
Q 026389 78 GPEDVCVDRNGVLYTAT--R------------DGWIKRLHKNGT---------WENWKLIGGDTLLGITTTQE-NEILVC 133 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~--~------------~g~I~~~~~~G~---------~~~~~~~~~~p~~Gl~~d~~-G~L~v~ 133 (239)
.-..|++++||.||++. . .|+|++++.++. .+.|......|. |+++++. |+||++
T Consensus 178 ~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~q-Gl~w~P~tg~Lw~~ 256 (399)
T COG2133 178 FGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQ-GLAWHPVTGALWTT 256 (399)
T ss_pred CcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCcc-ceeecCCCCcEEEE
Confidence 34469999999999664 3 278888875442 356777778899 9999987 899999
Q ss_pred eCCC
Q 026389 134 DADK 137 (239)
Q Consensus 134 d~~~ 137 (239)
+++.
T Consensus 257 e~g~ 260 (399)
T COG2133 257 EHGP 260 (399)
T ss_pred ecCC
Confidence 9875
No 79
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.45 E-value=0.0083 Score=50.25 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=88.3
Q ss_pred ceEEEcC-CCCEEEEeCCCeEEEEecCCc--EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEec
Q 026389 80 EDVCVDR-NGVLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLAS 152 (239)
Q Consensus 80 e~ia~d~-~G~ly~~~~~g~I~~~~~~G~--~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~ 152 (239)
..|...| ++.|++++.+|.|+.||.-.. .....+....+...+++++||..+++-..+|...+. .++ .+.+..
T Consensus 128 n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 128 NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred ceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE
Confidence 3577777 578999999999999995222 122222233444378899999888877666665554 233 333221
Q ss_pred --ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-eEEEecCCC-CCcceEEEcCC
Q 026389 153 --HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSL-FFANGVALSKD 228 (239)
Q Consensus 153 --~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-~~~~~~~~l-~~pnGia~s~d 228 (239)
.+.- .-.+.--+...||+....|.++ ...++.++.++- +++..+++- ..--+.+||.|
T Consensus 208 ~~k~~a-h~~~il~C~lSPd~k~lat~ss-----------------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d 269 (311)
T KOG0315|consen 208 VHKFQA-HNGHILRCLLSPDVKYLATCSS-----------------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD 269 (311)
T ss_pred hhheec-ccceEEEEEECCCCcEEEeecC-----------------CceEEEEecCCceeeEEEeecCCceEEeeeeccC
Confidence 1111 1134556788999988888776 245566665544 555555543 45678999999
Q ss_pred CCEEEEEeC
Q 026389 229 EDYLVVCET 237 (239)
Q Consensus 229 g~~lyvadt 237 (239)
|++|+.+++
T Consensus 270 g~YlvTass 278 (311)
T KOG0315|consen 270 GEYLVTASS 278 (311)
T ss_pred ccEEEecCC
Confidence 999987764
No 80
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.42 E-value=0.008 Score=56.77 Aligned_cols=107 Identities=11% Similarity=0.126 Sum_probs=64.5
Q ss_pred EEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-c----------eEEecc-cCCccccccccEEEcCCCCEE
Q 026389 109 ENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-V----------TVLASH-VNGSRINLADDLIAATDGSIY 174 (239)
Q Consensus 109 ~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~----------~~l~~~-~~g~~~~~pn~l~vd~dG~iy 174 (239)
......+.+|+ |+.+++||+ +|++......+.+. -.. . ..+..+ .-| ..|-..++|.+|+.|
T Consensus 314 ~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG---lGPLHTaFDg~G~ay 389 (635)
T PRK02888 314 TRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG---LGPLHTAFDGRGNAY 389 (635)
T ss_pred EEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC---CCcceEEECCCCCEE
Confidence 44456778999 999999995 77777666666553 111 1 222222 123 357789999999999
Q ss_pred EEeCCCCcCcccccccceeecCCceEEEEeCCC----------CeEEEecCCCCCcceEEE------cCCCCEEEEEe
Q 026389 175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL----------NETSILLDSLFFANGVAL------SKDEDYLVVCE 236 (239)
Q Consensus 175 ~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~----------~~~~~~~~~l~~pnGia~------s~dg~~lyvad 236 (239)
.|-.- ..+|.+||.+. ..+..-++.-+.|--+.- .+||++|++.+
T Consensus 390 tslf~-----------------dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 390 TTLFL-----------------DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred EeEee-----------------cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 88533 23566666542 112222333445544444 78999887654
No 81
>PTZ00421 coronin; Provisional
Probab=97.42 E-value=0.026 Score=52.60 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=81.6
Q ss_pred CcceEEEcC-CCC-EEEEeCCCeEEEEec-CCc--------EEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--
Q 026389 78 GPEDVCVDR-NGV-LYTATRDGWIKRLHK-NGT--------WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-- 143 (239)
Q Consensus 78 gPe~ia~d~-~G~-ly~~~~~g~I~~~~~-~G~--------~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-- 143 (239)
.-.+++|++ ++. |++++.|+.|..|+. ++. ...+........ .+++.+++ +++++-...+.+++.
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 345789998 665 557779999999884 221 122222223445 78898875 677766667777775
Q ss_pred cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC--C
Q 026389 144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--F 219 (239)
Q Consensus 144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~--~ 219 (239)
..+ ...+... . ...+.+++.++|.+.++.+. .|.|..||+.+++...-..+.. .
T Consensus 156 ~tg~~~~~l~~h-~----~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~ 213 (493)
T PTZ00421 156 ERGKAVEVIKCH-S----DQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAK 213 (493)
T ss_pred CCCeEEEEEcCC-C----CceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCc
Confidence 345 2233211 1 23678999999988877654 5788889987766433222211 1
Q ss_pred cceEEEcCCCCEEEE
Q 026389 220 ANGVALSKDEDYLVV 234 (239)
Q Consensus 220 pnGia~s~dg~~lyv 234 (239)
...+.+.+++..++.
T Consensus 214 ~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 214 SQRCLWAKRKDLIIT 228 (493)
T ss_pred ceEEEEcCCCCeEEE
Confidence 234556666655543
No 82
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.38 E-value=0.01 Score=53.87 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=69.4
Q ss_pred eEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-E-EEEeCC--CCeEEEc-cCC-ceEEecccCCccccccccEEEcCC
Q 026389 98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-I-LVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD 170 (239)
Q Consensus 98 ~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L-~v~d~~--~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~d 170 (239)
+|+.+|.+|. .+.+........ ..++.+||+ | |+.... ..++..+ ..| .+.+.. ..+ ......+.||
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCC
Confidence 3556666664 222222222234 678889995 4 444332 2355556 455 444432 222 1235789999
Q ss_pred C-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389 171 G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 171 G-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
| .|+|+.... +...||++|.++++.+.+...-.......|+|||+.|+++
T Consensus 254 G~~la~~~~~~---------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~ 304 (430)
T PRK00178 254 GSKLAFVLSKD---------------GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFT 304 (430)
T ss_pred CCEEEEEEccC---------------CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEE
Confidence 9 577665331 1347999999988887765544445567899999987654
No 83
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.36 E-value=0.007 Score=54.46 Aligned_cols=100 Identities=16% Similarity=0.230 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEec-ccCCccccccc
Q 026389 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLAS-HVNGSRINLAD 163 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~-~~~g~~~~~pn 163 (239)
+|.+|+++.+|.++.+|. +|+. .|....+.+. .+++ .+|+||+++....++.++ .+|..+... ...+.. ..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~-~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQI-VWKREYGSVN-DFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL---LT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCE-EEeecCCCcc-CcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc---cc
Confidence 678999888999999996 5653 4544444444 5555 367999999878888888 567333322 112211 12
Q ss_pred cEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (239)
Q Consensus 164 ~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~ 211 (239)
..++ .+|+||+.+.. |.|+.+|+++|++.
T Consensus 330 sp~v-~~g~l~v~~~~------------------G~l~~ld~~tG~~~ 358 (394)
T PRK11138 330 APVL-YNGYLVVGDSE------------------GYLHWINREDGRFV 358 (394)
T ss_pred CCEE-ECCEEEEEeCC------------------CEEEEEECCCCCEE
Confidence 2233 36899998754 88999999888764
No 84
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.35 E-value=0.001 Score=56.27 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=41.0
Q ss_pred CcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcEEEeeec----------cCcCccCeEEcCCCCEEEEeCCCCeE
Q 026389 75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLI----------GGDTLLGITTTQENEILVCDADKGLL 140 (239)
Q Consensus 75 ~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~~----------~~~p~~Gl~~d~~G~L~v~d~~~g~~ 140 (239)
.+..|.++++++ .|++|+-+ ...+|+.+|.+|++...... ...|- ||++|++|+|||+...+-.+
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpE-GIa~d~~G~LYIvsEpNlfy 245 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPE-GIAFDPDGNLYIVSEPNLFY 245 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEE-EEEE-TT--EEEEETTTEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCcc-EEEECCCCCEEEEcCCceEE
Confidence 366799999998 78999655 88899999999986544322 13689 99999999999998754333
No 85
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.011 Score=54.33 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=88.4
Q ss_pred eEEEcCCCCEEEEe-CCCeEEEEecCC-c--E-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--c-CC--ceEE
Q 026389 81 DVCVDRNGVLYTAT-RDGWIKRLHKNG-T--W-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--E-EG--VTVL 150 (239)
Q Consensus 81 ~ia~d~~G~ly~~~-~~g~I~~~~~~G-~--~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~-~g--~~~l 150 (239)
.+.+.++|+..+.. .++.|..++..+ + . ........... +++|.++|+.+++-+....+++. + ++ .+++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence 45667788776444 666666665422 2 1 11111122344 78999999988887777888775 2 33 4444
Q ss_pred ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceEEEcCCC
Q 026389 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDE 229 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGia~s~dg 229 (239)
.... .+.+.+++.++|+++++-+. .+.|..||..+++....+. .-..-++++|++||
T Consensus 243 ~gH~-----~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 243 KGHS-----TYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG 300 (456)
T ss_pred cCCC-----CceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCC
Confidence 3221 34689999999988888765 5788889998877655544 34466899999999
Q ss_pred CEEEEEe
Q 026389 230 DYLVVCE 236 (239)
Q Consensus 230 ~~lyvad 236 (239)
+.|+.+.
T Consensus 301 ~~l~s~s 307 (456)
T KOG0266|consen 301 NLLVSAS 307 (456)
T ss_pred CEEEEcC
Confidence 9887663
No 86
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.32 E-value=0.034 Score=50.77 Aligned_cols=135 Identities=15% Similarity=0.049 Sum_probs=77.5
Q ss_pred eEEEcCCCC-EEEEe-CCC--eEEE--EecC----CcEEEeeec-cCcCccCeEEcCCCC-EEE-EeCCC--CeEEEcc-
Q 026389 81 DVCVDRNGV-LYTAT-RDG--WIKR--LHKN----GTWENWKLI-GGDTLLGITTTQENE-ILV-CDADK--GLLKVTE- 144 (239)
Q Consensus 81 ~ia~d~~G~-ly~~~-~~g--~I~~--~~~~----G~~~~~~~~-~~~p~~Gl~~d~~G~-L~v-~d~~~--g~~~v~~- 144 (239)
..+|+|||+ |.+.. ..| .|+. ++.+ |+.+.+... .+... ..++.+||+ |+. ++... .++.++.
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~-~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQG-NPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcC-CeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 348889984 44433 333 4444 3422 233333222 12334 678899996 444 44322 3444442
Q ss_pred -CC--ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc
Q 026389 145 -EG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA 220 (239)
Q Consensus 145 -~g--~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p 220 (239)
.+ .+.+... . .......+.|||+ |+|+.... +..+|+.||.++++.+.+..+....
T Consensus 314 ~~g~~~~~lt~~-~----~~~~~p~wSPDG~~Laf~~~~~---------------g~~~I~v~dl~~g~~~~Lt~~~~~~ 373 (428)
T PRK01029 314 PEGQSPRLLTKK-Y----RNSSCPAWSPDGKKIAFCSVIK---------------GVRQICVYDLATGRDYQLTTSPENK 373 (428)
T ss_pred ccccceEEeccC-C----CCccceeECCCCCEEEEEEcCC---------------CCcEEEEEECCCCCeEEccCCCCCc
Confidence 22 3333221 1 1234678999994 66665331 1357999999999888776554456
Q ss_pred ceEEEcCCCCEEEEEe
Q 026389 221 NGVALSKDEDYLVVCE 236 (239)
Q Consensus 221 nGia~s~dg~~lyvad 236 (239)
...+++|||+.|+++-
T Consensus 374 ~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 374 ESPSWAIDSLHLVYSA 389 (428)
T ss_pred cceEECCCCCEEEEEE
Confidence 7789999999887653
No 87
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.003 Score=54.07 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=61.7
Q ss_pred CCcceEEEcC-CCCEEEEeCC--CeEEEEecC--C-cEEEee------eccCcCccCeEEc-CCCCEEEE-eCCCCeEEE
Q 026389 77 NGPEDVCVDR-NGVLYTATRD--GWIKRLHKN--G-TWENWK------LIGGDTLLGITTT-QENEILVC-DADKGLLKV 142 (239)
Q Consensus 77 ~gPe~ia~d~-~G~ly~~~~~--g~I~~~~~~--G-~~~~~~------~~~~~p~~Gl~~d-~~G~L~v~-d~~~g~~~v 142 (239)
.|=||+|||+ ++++|+.=.. -+|+.++.. . ...... +..-.-.+|+.+| ..|.|+|. +..+.++.+
T Consensus 181 ~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Ev 260 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEV 260 (316)
T ss_pred cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEE
Confidence 3678999998 6688887633 467776521 1 010000 0001122388888 34567665 555667788
Q ss_pred ccCC--ceEEe--cccCC--ccccccccEEEcCCCCEEEEeCC
Q 026389 143 TEEG--VTVLA--SHVNG--SRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 143 ~~~g--~~~l~--~~~~g--~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
+.+| .+.+. ....| ..+..+.|++.|.+|+||+....
T Consensus 261 d~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 261 DLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 8766 33332 22222 23457899999999999998755
No 88
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.30 E-value=0.017 Score=52.73 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=72.3
Q ss_pred CeEEEEecCCcE-EEeeeccCcCccCeEEcCCCC--EEEEeCC---CCeEEEc-cCC-ceEEecccCCccccccccEEEc
Q 026389 97 GWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE--ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAA 168 (239)
Q Consensus 97 g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~--L~v~d~~---~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd 168 (239)
.+|+..|.||.- +.+.. .+.-. ...+.+||+ +|++... ..++.++ ..| .+.+.. ..|. .....+.
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~----~~~~~~S 241 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-GGLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM----LVVSDVS 241 (419)
T ss_pred ceEEEECCCCCceeEEcc-CCCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc----EEeeEEC
Confidence 477788888753 33333 23333 677889995 5554332 2356666 466 555543 3331 1235689
Q ss_pred CCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 169 ~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
||| .+.++.... ++..||.+|.++++.+.+...-..-....|+|||+.||++.
T Consensus 242 PDG~~la~~~~~~---------------g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~S 295 (419)
T PRK04043 242 KDGSKLLLTMAPK---------------GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVS 295 (419)
T ss_pred CCCCEEEEEEccC---------------CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEE
Confidence 999 677776431 24689999998888777654322223457999999887764
No 89
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.30 E-value=0.011 Score=49.48 Aligned_cols=135 Identities=18% Similarity=0.206 Sum_probs=78.6
Q ss_pred ceEEEcCCCC-EEEEeCCCeEEEEecCC-cEEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC-ceEEecc
Q 026389 80 EDVCVDRNGV-LYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG-VTVLASH 153 (239)
Q Consensus 80 e~ia~d~~G~-ly~~~~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g-~~~l~~~ 153 (239)
..|.|..+|+ +|+++.||.+..||--. +..........-+ .+...+ ++.|+++|...++..-| .+- ...+..+
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 4567777775 67888999888887421 1111111122233 566664 46899999754444444 233 4444433
Q ss_pred cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-Eec--CCC----CCcceEEEc
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL--DSL----FFANGVALS 226 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~--~~l----~~pnGia~s 226 (239)
. + .+...++|++||...++-.+ .|+.|.++.-+++.. .+. ..+ .+.--+-+|
T Consensus 166 ~-~---~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 166 D-D---TSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred C-C---cceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 2 2 35678999999987766544 478888876543321 111 111 233456789
Q ss_pred CCCCEEEEEe
Q 026389 227 KDEDYLVVCE 236 (239)
Q Consensus 227 ~dg~~lyvad 236 (239)
||+++|..+.
T Consensus 225 Pd~k~lat~s 234 (311)
T KOG0315|consen 225 PDVKYLATCS 234 (311)
T ss_pred CCCcEEEeec
Confidence 9999776554
No 90
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.29 E-value=0.011 Score=52.68 Aligned_cols=61 Identities=21% Similarity=0.433 Sum_probs=40.8
Q ss_pred EEcCCCCEEEEeCCCeEEEEec-CCcEEEeee-ccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC
Q 026389 83 CVDRNGVLYTATRDGWIKRLHK-NGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG 146 (239)
Q Consensus 83 a~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g 146 (239)
+++ ++.+|+++.+|.|+.+|. +|+.. |.. .......+.+++ ++++|+......++.++ .+|
T Consensus 62 ~v~-~~~v~v~~~~g~v~a~d~~tG~~~-W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG 125 (377)
T TIGR03300 62 AVA-GGKVYAADADGTVVALDAETGKRL-WRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDG 125 (377)
T ss_pred EEE-CCEEEEECCCCeEEEEEccCCcEe-eeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCC
Confidence 444 679999999999999995 67642 322 222222144553 67899988766778888 477
No 91
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.25 E-value=0.00057 Score=37.59 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=21.6
Q ss_pred CCcceEEEcCCCCEEEEe-CCCeEEEE
Q 026389 77 NGPEDVCVDRNGVLYTAT-RDGWIKRL 102 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~ 102 (239)
..|.||+++++|+||+++ .+++|.++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 579999999999999888 67777764
No 92
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.19 E-value=0.017 Score=52.85 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=82.2
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC---ceEEe-
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG---VTVLA- 151 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g---~~~l~- 151 (239)
..|.++++.++|.+.+..-...|..+...+.... .+..-.+- ++++.+++...+.....+-+++. -.| .+...
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~-~~~~y~~s-~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~ 483 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS-IPIGYESS-AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL 483 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCccee-eccccccc-eEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence 5788999999875554333444555542233322 34556677 99999999766655555666665 233 22211
Q ss_pred cccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC--CCcceEEEcCC
Q 026389 152 SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKD 228 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l--~~pnGia~s~d 228 (239)
.... .-+..+++.|||. +-.+|.+ +++..||..+++...-.-.+ ...|.|+++|+
T Consensus 484 ~~h~----a~iT~vaySpd~~yla~~Da~------------------rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 484 LEHR----AAITDVAYSPDGAYLAAGDAS------------------RKVVLYDVASREVKTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred eccc----CCceEEEECCCCcEEEEeccC------------------CcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence 1111 2378999999995 5556654 78899999887763322222 35699999999
Q ss_pred CCE
Q 026389 229 EDY 231 (239)
Q Consensus 229 g~~ 231 (239)
...
T Consensus 542 n~~ 544 (603)
T KOG0318|consen 542 NKL 544 (603)
T ss_pred ceE
Confidence 864
No 93
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.18 E-value=0.028 Score=51.33 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=83.5
Q ss_pred CcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccC-cCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEEecccC
Q 026389 78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG-DTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVN 155 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~-~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l~~~~~ 155 (239)
.++-|+-. .+.||++...+.|++=+.++.........+ .-. |++..++.++|++-...+.+++..+. .+.- ..++
T Consensus 331 ~iRtv~e~-~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt-~~~~ 407 (626)
T KOG2106|consen 331 PIRTVAEG-KGDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWT-KIIE 407 (626)
T ss_pred CeeEEecC-CCcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEE-EEec
Confidence 34444433 345999998889988655443322222223 445 99999998888887777788776432 2221 1111
Q ss_pred CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
. ...-++++|.|.+.+... .|+.+.+|..+..+..+...-..-+-|+++|||.+|-|.
T Consensus 408 d----~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 408 D----PAECADFHPSGVVAVGTA------------------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred C----ceeEeeccCcceEEEeec------------------cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe
Confidence 1 134567888885555543 488999998876666665554455778889988876554
No 94
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.12 E-value=0.003 Score=56.12 Aligned_cols=135 Identities=15% Similarity=0.087 Sum_probs=90.5
Q ss_pred CCcceEEEcCC--C-CEEEEeCCCeEEEEecCCcE--EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceE
Q 026389 77 NGPEDVCVDRN--G-VLYTATRDGWIKRLHKNGTW--ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTV 149 (239)
Q Consensus 77 ~gPe~ia~d~~--G-~ly~~~~~g~I~~~~~~G~~--~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~ 149 (239)
..-.++.|.|. + .+.+++.||.+.-|+.+++. ..+.....+-- -++|.|+|+.+.+..+....++. ..+.+.
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk~El 296 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETKSEL 296 (459)
T ss_pred cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccchhh
Confidence 34556777774 3 67788899988888776642 23333344555 78999999999988887777775 344444
Q ss_pred EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCC
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD 228 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~d 228 (239)
+.. +|.. ....++++.+||.+..|..-. ..||| +|..+|.-..++.+ +....+|+|+|+
T Consensus 297 L~Q--EGHs-~~v~~iaf~~DGSL~~tGGlD---------------~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 297 LLQ--EGHS-KGVFSIAFQPDGSLAATGGLD---------------SLGRV--WDLRTGRCIMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred Hhh--cccc-cccceeEecCCCceeeccCcc---------------chhhe--eecccCcEEEEecccccceeeEeECCC
Confidence 432 2221 246799999999999886542 13666 56666666555544 556688999999
Q ss_pred CCEE
Q 026389 229 EDYL 232 (239)
Q Consensus 229 g~~l 232 (239)
|-.|
T Consensus 357 Gy~l 360 (459)
T KOG0272|consen 357 GYHL 360 (459)
T ss_pred ceEE
Confidence 8654
No 95
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=97.11 E-value=0.0022 Score=38.83 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=31.8
Q ss_pred CCEEEEeCCCCcCcccccccceeecCCc-eEEEEeCCCCeEEEe-cCCCCCcceEEEcC
Q 026389 171 GSIYFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNETSIL-LDSLFFANGVALSK 227 (239)
Q Consensus 171 G~iy~td~~~~~~~~~~~~~~~e~~~~g-~v~~~d~~~~~~~~~-~~~l~~pnGia~s~ 227 (239)
|+||+||.. .. ++.+-+.++...+++ .+++..|+|||+++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 579999987 34 788888887765555 47899999999874
No 96
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.11 E-value=0.062 Score=47.26 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=87.6
Q ss_pred cCCcceEEEcC-CCCEEEEeCCCe------EEEEecCC------cEE-----EeeeccC--------cCccCeEEcCCCC
Q 026389 76 LNGPEDVCVDR-NGVLYTATRDGW------IKRLHKNG------TWE-----NWKLIGG--------DTLLGITTTQENE 129 (239)
Q Consensus 76 ~~gPe~ia~d~-~G~ly~~~~~g~------I~~~~~~G------~~~-----~~~~~~~--------~p~~Gl~~d~~G~ 129 (239)
+.+=.||++++ +|++|+-+.+|. +++++.+. .++ .+....+ .+- ||++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence 55678899995 677775555555 66655321 111 1111222 456 899988999
Q ss_pred EEEEeCCC-------CeEEEccCC--ceEE-e-ccc-------CCc-cccccccEEEcCCCC-EEEEeCCCCcCcccccc
Q 026389 130 ILVCDADK-------GLLKVTEEG--VTVL-A-SHV-------NGS-RINLADDLIAATDGS-IYFSVASTKFGLHNWGL 189 (239)
Q Consensus 130 L~v~d~~~-------g~~~v~~~g--~~~l-~-~~~-------~g~-~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~ 189 (239)
+||++.+. .+++++.+| .+.+ . ..+ .+. .=....+|++.+||+ +|+.-.+...+-.. .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~--~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP--R 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc--c
Confidence 99998776 455666667 3333 1 111 111 123467999999997 88765542111100 0
Q ss_pred cceeecCCceEEEEeCCC-C----eEEEecC------CCCCcceEEEcCCCCEEEEEe
Q 026389 190 DLLEAKPHGKLLKYDPSL-N----ETSILLD------SLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 190 ~~~e~~~~g~v~~~d~~~-~----~~~~~~~------~l~~pnGia~s~dg~~lyvad 236 (239)
.....+..-|+++||+.+ + +.....+ .-..+..++.-+|++ |+|-|
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLE 232 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLE 232 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEE
Confidence 000111235899999875 2 1222223 234556677777887 55554
No 97
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.10 E-value=0.0067 Score=57.27 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=32.8
Q ss_pred ceEEEEeCCC-----CeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 198 GKLLKYDPSL-----NETSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 198 g~v~~~d~~~-----~~~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
++|-.+|..+ .++...+..-..|.||++||||+++|++.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence 5788999876 356666667789999999999999999863
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.09 E-value=0.048 Score=45.90 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCceEEecccCCccccccccE
Q 026389 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDL 165 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~~~l~~~~~g~~~~~pn~l 165 (239)
|..|..+..++.|..||. .|+...-......+. .+.+.++|+++....+.++...+.+...+|... + .|- ..+..
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~-k-~P~-nV~SA 230 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY-K-MPC-NVESA 230 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeec-c-Ccc-ccccc
Confidence 455555557788888884 554333234445566 899999999877665544444444333333221 1 111 12344
Q ss_pred EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCc-ceEEEcCCCCEEEEEe
Q 026389 166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFA-NGVALSKDEDYLVVCE 236 (239)
Q Consensus 166 ~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~p-nGia~s~dg~~lyvad 236 (239)
...|+-.+|++... .+.+|+||-++++-.... .+-..| ..|.|+|||. +|.+-
T Consensus 231 SL~P~k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsG 285 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASG 285 (334)
T ss_pred cccCCCceEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeecc
Confidence 55567677887543 578999999988654442 333333 6688999997 67553
No 99
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.049 Score=47.19 Aligned_cols=145 Identities=18% Similarity=0.206 Sum_probs=84.9
Q ss_pred cCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-C-EEEEeCCCCeEEEc-cCC-ceE
Q 026389 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-E-ILVCDADKGLLKVT-EEG-VTV 149 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~-L~v~d~~~g~~~v~-~~g-~~~ 149 (239)
+.--.+++|+++|+.. +++.|..|..||. +|....-........ +..+.+.. + .+++-....-+.++ .++ .++
T Consensus 65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~-~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~ 143 (405)
T KOG1273|consen 65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVW-GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV 143 (405)
T ss_pred ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccc-eeeeccccCCeEEEEEecCCcEEEEecCCceee
Confidence 3344679999999876 5568889999984 665321111222333 66665433 3 44444433334444 445 555
Q ss_pred EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcceEEEcC
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSK 227 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pnGia~s~ 227 (239)
|....++.--..+.-..+|+.|...++..+ .|.+..||..+-+...-. +.......|-++.
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGts-----------------KGkllv~~a~t~e~vas~rits~~~IK~I~~s~ 206 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTS-----------------KGKLLVYDAETLECVASFRITSVQAIKQIIVSR 206 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecC-----------------cceEEEEecchheeeeeeeechheeeeEEEEec
Confidence 554444432223444567888866555544 589999998765543221 2234556788898
Q ss_pred CCCEEEEEeCC
Q 026389 228 DEDYLVVCETF 238 (239)
Q Consensus 228 dg~~lyvadt~ 238 (239)
.|+++.++-+-
T Consensus 207 ~g~~liiNtsD 217 (405)
T KOG1273|consen 207 KGRFLIINTSD 217 (405)
T ss_pred cCcEEEEecCC
Confidence 99988776553
No 100
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.08 E-value=0.052 Score=48.78 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCeEEEEec-CCcEEEeeeccC------------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCC
Q 026389 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG------------DTLLGITTTQENEILVCDADKGLLKVT-EEG 146 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~------------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g 146 (239)
+|.+|+.+.+|.++.+|. +|+. .|..... ....++++ .++++|+.+....++.+| .+|
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG 140 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKE-IWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDG 140 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcE-eeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCC
Confidence 689999999999999996 5763 3332111 11103444 357899988766778888 577
No 101
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.07 E-value=0.058 Score=49.32 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=73.4
Q ss_pred eEEEcCCCC-EEEE-eCCC--eEEEEecC--C-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-c
Q 026389 81 DVCVDRNGV-LYTA-TRDG--WIKRLHKN--G-TWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-V 147 (239)
Q Consensus 81 ~ia~d~~G~-ly~~-~~~g--~I~~~~~~--G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~ 147 (239)
..+|+|||+ |++. +.+| +|+.++.+ + +.+.+........ ...+.+||+ |+++.... .++.++ ..| .
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~-~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSS-CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcc-ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 459999986 5544 4444 68887653 2 2333333333344 678889996 44443322 344556 355 5
Q ss_pred eEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEc
Q 026389 148 TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226 (239)
Q Consensus 148 ~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s 226 (239)
+.+... . .......+.+|| .|+|+.... +...||.+|.++++.+.+..+.......+++
T Consensus 364 ~~Lt~~-~----~~~~~p~wSpDG~~L~f~~~~~---------------g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 364 YQLTTS-P----ENKESPSWAIDSLHLVYSAGNS---------------NESELYLISLITKKTRKIVIGSGEKRFPSWG 423 (428)
T ss_pred EEccCC-C----CCccceEECCCCCEEEEEECCC---------------CCceEEEEECCCCCEEEeecCCCcccCceec
Confidence 555322 1 123567899999 477765431 2468999999888877776443333445565
Q ss_pred C
Q 026389 227 K 227 (239)
Q Consensus 227 ~ 227 (239)
|
T Consensus 424 ~ 424 (428)
T PRK01029 424 A 424 (428)
T ss_pred C
Confidence 5
No 102
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.07 E-value=0.024 Score=48.18 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=86.7
Q ss_pred CCcceEEEcCCC-CEEEEeCCCeEEEEecCCc--EEEeeec-cCcCccCeEEcCCC-C-EEEEeCCCCeEEEc-cCCceE
Q 026389 77 NGPEDVCVDRNG-VLYTATRDGWIKRLHKNGT--WENWKLI-GGDTLLGITTTQEN-E-ILVCDADKGLLKVT-EEGVTV 149 (239)
Q Consensus 77 ~gPe~ia~d~~G-~ly~~~~~g~I~~~~~~G~--~~~~~~~-~~~p~~Gl~~d~~G-~-L~v~d~~~g~~~v~-~~g~~~ 149 (239)
..--++++++|. .|.+++.|..|..|+.-|. .+..... ...-. -++|.|+. + ++|.-+..+.+++. .++.++
T Consensus 106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs-cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS-CVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE-EEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 445578898865 5667789999998886443 2222111 23344 67788774 4 45555557888886 344222
Q ss_pred EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg 229 (239)
.. .+.|.. .+.|.++|.|||.+-.+... .|.++.+|.+.++--.-.+.....|.++|+|..
T Consensus 185 ~~-~~~gh~-~~v~t~~vSpDGslcasGgk-----------------dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 185 RT-TFIGHS-GYVNTVTVSPDGSLCASGGK-----------------DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred hh-cccccc-ccEEEEEECCCCCEEecCCC-----------------CceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence 21 222322 46899999999999877433 588999998766554445667778999999974
No 103
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.00 E-value=0.071 Score=43.29 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=69.7
Q ss_pred CeEEEEecCC-cEEEeee-ccCcCccCeEEcCCCC-EEEEeC-CCCeEEEc-cCCceEEecccCCccccccccEEEcCCC
Q 026389 97 GWIKRLHKNG-TWENWKL-IGGDTLLGITTTQENE-ILVCDA-DKGLLKVT-EEGVTVLASHVNGSRINLADDLIAATDG 171 (239)
Q Consensus 97 g~I~~~~~~G-~~~~~~~-~~~~p~~Gl~~d~~G~-L~v~d~-~~g~~~v~-~~g~~~l~~~~~g~~~~~pn~l~vd~dG 171 (239)
..|++++..+ ....+.- ..+... .+++.|+|+ +.|+.. ....+.+. ..+..+. . +.. ...|.+..+|+|
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~-~-~~~---~~~n~i~wsP~G 112 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF-S-FGT---QPRNTISWSPDG 112 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeE-e-ecC---CCceEEEECCCC
Confidence 3566675433 2333222 223456 899999995 445532 22344443 3441111 1 111 245889999999
Q ss_pred CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 172 SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 172 ~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
+..+..... ...|.|..||.+..+..... .-.....+++||||+++..+.+
T Consensus 113 ~~l~~~g~~--------------n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 113 RFLVLAGFG--------------NLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CEEEEEEcc--------------CCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEe
Confidence 766654321 12478999998755443222 2335688999999999988765
No 104
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.99 E-value=0.024 Score=50.43 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=63.1
Q ss_pred CCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEec-ccCCccccccc
Q 026389 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLAS-HVNGSRINLAD 163 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~-~~~g~~~~~pn 163 (239)
++.+|+++.+|.++.++. +|+. .|........ ..+++ ++++|+++....++.++ .+|..+... ...+.....|
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~-~W~~~~~~~~-~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp- 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRV-LWKRDASSYQ-GPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP- 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcE-EEeeccCCcc-CceEe-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC-
Confidence 578999889999999997 5653 3433333333 45553 57899998766777888 467332221 2222222222
Q ss_pred cEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (239)
Q Consensus 164 ~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~ 211 (239)
.+ .++.+|+.+.. |.|+.+|++++++.
T Consensus 317 --~i-~g~~l~~~~~~------------------G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 317 --AV-VGGYLVVGDFE------------------GYLHWLSREDGSFV 343 (377)
T ss_pred --EE-ECCEEEEEeCC------------------CEEEEEECCCCCEE
Confidence 33 25688888753 88999999888764
No 105
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.85 E-value=0.03 Score=50.11 Aligned_cols=101 Identities=21% Similarity=0.438 Sum_probs=58.8
Q ss_pred CCcceEEEc--C-CCCEE--EEeCCCeEEEEe--c--CCcE-----EEeeeccCcCccCeEEc-CCCCEEEEeCCCCeEE
Q 026389 77 NGPEDVCVD--R-NGVLY--TATRDGWIKRLH--K--NGTW-----ENWKLIGGDTLLGITTT-QENEILVCDADKGLLK 141 (239)
Q Consensus 77 ~gPe~ia~d--~-~G~ly--~~~~~g~I~~~~--~--~G~~-----~~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~ 141 (239)
..|.|++.- + +|.+| +..++|++..|. . +|.+ +.| .....+- |+++| ..|.||+++...|+++
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPE-GCVVDDETGRLYVGEEDVGIWR 233 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EE-EEEEETTTTEEEEEETTTEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcce-EEEEecccCCEEEecCccEEEE
Confidence 446788874 2 57787 444788776543 2 4432 222 3456788 99998 5579999999999999
Q ss_pred Ec--cCC--ceEEecccCCcccc-ccccEEEc--CC--CCEEEEeCC
Q 026389 142 VT--EEG--VTVLASHVNGSRIN-LADDLIAA--TD--GSIYFSVAS 179 (239)
Q Consensus 142 v~--~~g--~~~l~~~~~g~~~~-~pn~l~vd--~d--G~iy~td~~ 179 (239)
++ +++ ...++....+..+. -..||++- .+ |.|++|+..
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 98 333 34444333443332 35567763 34 467777654
No 106
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.85 E-value=0.12 Score=42.31 Aligned_cols=128 Identities=20% Similarity=0.280 Sum_probs=71.2
Q ss_pred CCCCEEEEeCCCeEEEEe-cCCcEEEee-eccC-------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEecccC
Q 026389 86 RNGVLYTATRDGWIKRLH-KNGTWENWK-LIGG-------DTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASHVN 155 (239)
Q Consensus 86 ~~G~ly~~~~~g~I~~~~-~~G~~~~~~-~~~~-------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~~~ 155 (239)
.++.+|+...+++|+.+| .+|+.. |. .... .+. ...++ .+.+|++.....++.++ .+|..+......
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVL-WSIYLTSSPPAGVRSSS-SPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEE-EEEEE-SSCTCSTB--S-EEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred cccccccccceeeeEecccCCccee-eeecccccccccccccc-CceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 478899988888999999 578653 22 1111 112 23333 45788888777888888 678222211111
Q ss_pred Ccc-------ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389 156 GSR-------INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228 (239)
Q Consensus 156 g~~-------~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d 228 (239)
..+ +...++-.+-.+|++|++... |+++.+|..+++.. .........++ ...+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------g~~~~~d~~tg~~~-w~~~~~~~~~~-~~~~ 211 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDGRVYVSSGD------------------GRVVAVDLATGEKL-WSKPISGIYSL-PSVD 211 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTTEEEEECCT------------------SSEEEEETTTTEEE-EEECSS-ECEC-EECC
T ss_pred CCCCCcceeeecccccceEEECCEEEEEcCC------------------CeEEEEECCCCCEE-EEecCCCccCC-ceee
Confidence 111 111123333335689998765 55777788888744 32223333332 3456
Q ss_pred CCEEEEEe
Q 026389 229 EDYLVVCE 236 (239)
Q Consensus 229 g~~lyvad 236 (239)
+..||+.+
T Consensus 212 ~~~l~~~~ 219 (238)
T PF13360_consen 212 GGTLYVTS 219 (238)
T ss_dssp CTEEEEEE
T ss_pred CCEEEEEe
Confidence 67777765
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.85 E-value=0.072 Score=51.35 Aligned_cols=140 Identities=20% Similarity=0.276 Sum_probs=87.2
Q ss_pred cceEEEcCCCCE-EEEeCCCeEEEEec-CCc-EEEee--eccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC-c--eE
Q 026389 79 PEDVCVDRNGVL-YTATRDGWIKRLHK-NGT-WENWK--LIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG-V--TV 149 (239)
Q Consensus 79 Pe~ia~d~~G~l-y~~~~~g~I~~~~~-~G~-~~~~~--~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~--~~ 149 (239)
-..++++.=|+. ++|...|.|-+++- .|- ...|. .....+.+|+++|.-+++.|+....|++.+.. ++ . ..
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 445677776665 46778999999985 342 22332 11233444999998899999888888887752 22 1 00
Q ss_pred E-----------------------------ec--------ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccce
Q 026389 150 L-----------------------------AS--------HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (239)
Q Consensus 150 l-----------------------------~~--------~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~ 192 (239)
+ .+ .+.|. -+..|++++.+||+..++.+-
T Consensus 531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasm------------- 596 (910)
T KOG1539|consen 531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASM------------- 596 (910)
T ss_pred eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeec-------------
Confidence 0 00 01111 146899999999987666543
Q ss_pred eecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 193 EAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 193 e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
.+.|..||.-++...-.+.--.-+..+.|+|.|++|-.+.
T Consensus 597 ----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 597 ----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred ----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEE
Confidence 4678889977765432221112356788999999876654
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.83 E-value=0.026 Score=50.66 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=82.9
Q ss_pred cceEEEcCCCCEE-EEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c--cCC-ceEEe
Q 026389 79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T--EEG-VTVLA 151 (239)
Q Consensus 79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~--~~g-~~~l~ 151 (239)
-.+.++.|||.|+ ++..||.|..||... ....|....+..- .+.|..+|.-+++....+-+++ | ... .+.+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 4567899999999 566888888888532 2334433333344 7999988876666666664444 4 222 33222
Q ss_pred cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe---cCCCCCcceEEEcCC
Q 026389 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKD 228 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~---~~~l~~pnGia~s~d 228 (239)
-. + ....+.+.+|..|......++ .=+||.|+..+++.+.+ .+.....+|+.|..+
T Consensus 429 l~-~---~~~v~s~~fD~SGt~L~~~g~-----------------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 429 LD-E---KKEVNSLSFDQSGTYLGIAGS-----------------DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred cc-c---cccceeEEEcCCCCeEEeecc-----------------eeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 11 1 124789999999965544433 34789998777665443 334457899999877
Q ss_pred CCEE
Q 026389 229 EDYL 232 (239)
Q Consensus 229 g~~l 232 (239)
.+++
T Consensus 488 aq~l 491 (506)
T KOG0289|consen 488 AQYL 491 (506)
T ss_pred ceEE
Confidence 6543
No 109
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.83 E-value=0.0058 Score=55.15 Aligned_cols=143 Identities=13% Similarity=0.165 Sum_probs=86.2
Q ss_pred CCcceEEEcCCC-CEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCceEEec
Q 026389 77 NGPEDVCVDRNG-VLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLAS 152 (239)
Q Consensus 77 ~gPe~ia~d~~G-~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~~~l~~ 152 (239)
.-|..+-+.|++ +++ +|..+++|..||. .|++ +.+....+.-+ .+.|-++|+=+|+.+...-+++.+.+..+...
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence 357788888876 666 6669999999995 4553 22233345556 78888889888888777788887554211111
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC------CCeEEEecCCCCCcceEEEc
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS------LNETSILLDSLFFANGVALS 226 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~------~~~~~~~~~~l~~pnGia~s 226 (239)
..........--++..|+|..+.+.+- ..+++.|... -++.-.=...-.++..+.||
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~-----------------dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSM-----------------DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhcc-----------------CceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 111112233446788888887666554 2334443321 01111111123578899999
Q ss_pred CCCCEEEEEeC
Q 026389 227 KDEDYLVVCET 237 (239)
Q Consensus 227 ~dg~~lyvadt 237 (239)
|||++|.--|+
T Consensus 442 pDG~~l~SGds 452 (503)
T KOG0282|consen 442 PDGRTLCSGDS 452 (503)
T ss_pred CCCCeEEeecC
Confidence 99998876554
No 110
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.82 E-value=0.048 Score=47.36 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=61.3
Q ss_pred EEEcCCCC-EEEEe-----CCCeEEEEecCCc---EEEeeeccCcCccCeEEcCCC-CEEEEeCC------CC-------
Q 026389 82 VCVDRNGV-LYTAT-----RDGWIKRLHKNGT---WENWKLIGGDTLLGITTTQEN-EILVCDAD------KG------- 138 (239)
Q Consensus 82 ia~d~~G~-ly~~~-----~~g~I~~~~~~G~---~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~------~g------- 138 (239)
-+|++||+ ||++- ..|.|-.+|.... +..|...+-.|+ -+.+.+|| .|.|++.+ .|
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 47788886 55542 4589999997643 344555667799 99999999 78888754 12
Q ss_pred -----eEEEc-cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 139 -----LLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 139 -----~~~v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
++.+| .+| .+... ..+.....+.--++++.+|.++|....
T Consensus 135 tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQY 182 (305)
T ss_pred hcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEec
Confidence 23343 344 22211 111112245778999999999998643
No 111
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.79 E-value=0.0038 Score=51.89 Aligned_cols=124 Identities=22% Similarity=0.301 Sum_probs=65.5
Q ss_pred CcccccceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec--CCc--E-----EEeee-ccCcCccCeEEcCCCCEE
Q 026389 62 TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK--NGT--W-----ENWKL-IGGDTLLGITTTQENEIL 131 (239)
Q Consensus 62 n~~l~~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~--~G~--~-----~~~~~-~~~~p~~Gl~~d~~G~L~ 131 (239)
|+.+...++|..+.-..=..|.++++|.||....+|+++|... ++. + +.+.. .-.... -+-++++|-||
T Consensus 66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY 144 (229)
T PF14517_consen 66 NTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLY 144 (229)
T ss_dssp --HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EE
T ss_pred ccccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEE
Confidence 4444667888888333333899999999998888999999874 221 1 22211 112233 56778999999
Q ss_pred EEeCCCCeEEEc-cCC--c-----eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389 132 VCDADKGLLKVT-EEG--V-----TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY 203 (239)
Q Consensus 132 v~d~~~g~~~v~-~~g--~-----~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~ 203 (239)
+.+....+++.. +++ - +.++. +......--|...++|+||..++ +|+|||+
T Consensus 145 ~i~~dg~~~~~~~p~~~~~~W~~~s~~v~---~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~ 203 (229)
T PF14517_consen 145 AITPDGRLYRRYRPDGGSDRWLSGSGLVG---GGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRG 203 (229)
T ss_dssp EEETTE-EEEE---SSTT--HHHH-EEEE---SSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEE
T ss_pred EEcCCCceEEeCCCCCCCCccccccceec---cCCcccceEEeeCCCCcEEEEec------------------CCEEecc
Confidence 999765566664 322 1 22221 22223356788899999998854 4899999
Q ss_pred eCCC
Q 026389 204 DPSL 207 (239)
Q Consensus 204 d~~~ 207 (239)
.+.+
T Consensus 204 ~~p~ 207 (229)
T PF14517_consen 204 RPPQ 207 (229)
T ss_dssp S---
T ss_pred CCcc
Confidence 8764
No 112
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.76 E-value=0.1 Score=44.76 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=85.2
Q ss_pred eEEEcC-CCCEEEEe-CCCeEEEEec-CC-cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--c-CC-ceEEec
Q 026389 81 DVCVDR-NGVLYTAT-RDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--E-EG-VTVLAS 152 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~-~~g~I~~~~~-~G-~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~-~g-~~~l~~ 152 (239)
++.+.| +++.|++. -|.....||. +| -.++|.......+ .+.|-|+|.-+++-+..+..++. . +- +.+..+
T Consensus 191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN-sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN-SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc-eEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 345556 77777544 5666666663 33 3566666667788 99999999999998877777654 2 33 444432
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCCcceEEEcCCCCE
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDY 231 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~pnGia~s~dg~~ 231 (239)
. ......+.+++...|++.|+... ...+..+|.-.++..- +...-.....+.++|||.-
T Consensus 270 ~---~~~~gitSv~FS~SGRlLfagy~-----------------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 270 D---SIICGITSVAFSKSGRLLFAGYD-----------------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred C---cccCCceeEEEcccccEEEeeec-----------------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcE
Confidence 1 12234689999999999998643 3567788864444443 3333456677888888864
Q ss_pred E
Q 026389 232 L 232 (239)
Q Consensus 232 l 232 (239)
|
T Consensus 330 v 330 (343)
T KOG0286|consen 330 V 330 (343)
T ss_pred E
Confidence 3
No 113
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.75 E-value=0.076 Score=49.90 Aligned_cols=108 Identities=18% Similarity=0.340 Sum_probs=63.3
Q ss_pred CCCEEEEeCCCeEEEEec-CCcEEEeeeccC-----c--------CccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEe
Q 026389 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG-----D--------TLLGITTTQENEILVCDADKGLLKVT-EEGVTVLA 151 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~-----~--------p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~ 151 (239)
+|.||+++.+++|+.+|. +|+. .|..... . .. |+++. ++++|+++....++.+| .+|..+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~-lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE-LWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce-eeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 789999998999999996 5653 2321111 1 13 45553 57899998878889999 57833222
Q ss_pred cccCCcc--ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 152 SHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 152 ~~~~g~~--~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
....+.. ......-.+. +|.||+...+..++ ..|.|+.||..+|+.
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~------------~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-KGKVITGISGGEFG------------VRGYVTAYDAKTGKL 193 (527)
T ss_pred cccccccccccccCCcEEE-CCEEEEeecccccC------------CCcEEEEEECCCCce
Confidence 1111110 0011112222 67888876543222 247888888887765
No 114
>PTZ00420 coronin; Provisional
Probab=96.75 E-value=0.15 Score=48.24 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=70.3
Q ss_pred CCcceEEEcCC-CC-EEEEeCCCeEEEEecC-C-c-EE-------EeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc
Q 026389 77 NGPEDVCVDRN-GV-LYTATRDGWIKRLHKN-G-T-WE-------NWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT 143 (239)
Q Consensus 77 ~gPe~ia~d~~-G~-ly~~~~~g~I~~~~~~-G-~-~~-------~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~ 143 (239)
..-.+++|.++ +. |.+++.|+.|..|+.. + . .. .+........ .+++++++. ++++....+.+++.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence 34567899985 55 4577799999999852 2 1 11 1222223455 789999886 44555556777775
Q ss_pred --cCCceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389 144 --EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (239)
Q Consensus 144 --~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~ 211 (239)
..+.....-.. . .....++++++|.++++... .+.|..||+.+++..
T Consensus 154 Dl~tg~~~~~i~~-~---~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 154 DIENEKRAFQINM-P---KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIA 202 (568)
T ss_pred ECCCCcEEEEEec-C---CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEE
Confidence 34421111011 1 23678999999998877543 467888998877654
No 115
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.72 E-value=0.1 Score=49.91 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=62.2
Q ss_pred cceEEEcCCCCEEEE-eCCC-eEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc----cCC-ceEE
Q 026389 79 PEDVCVDRNGVLYTA-TRDG-WIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT----EEG-VTVL 150 (239)
Q Consensus 79 Pe~ia~d~~G~ly~~-~~~g-~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~----~~g-~~~l 150 (239)
-.++|+|+.|.|.+. +.+. .|+.|+. .|+..........|..++.|++.|.++++.+....+++. ..| ++.+
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE
Confidence 346899999988854 4443 6777774 677544333333454499999999988888777777664 356 6666
Q ss_pred ecccCCccccccccEEEcCCC-CEEEEeCC
Q 026389 151 ASHVNGSRINLADDLIAATDG-SIYFSVAS 179 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~ 179 (239)
.-.- -.-++++.||| .|-++...
T Consensus 518 ~i~s------dvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 518 EIRS------DVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred eecc------ceeEEEEcCCCCeEEEEEec
Confidence 3221 14577888888 56665443
No 116
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.69 E-value=0.03 Score=49.30 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=41.1
Q ss_pred ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-c-CCC-------------CCcceEEE
Q 026389 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-L-DSL-------------FFANGVAL 225 (239)
Q Consensus 161 ~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~-~~l-------------~~pnGia~ 225 (239)
-+.+|+++++|.+|+++....- .....+|++|+.++...+.+ + ..+ ...-||++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~-----------~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~ 154 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT-----------GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAV 154 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC-----------CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEE
Confidence 4679999889999999865210 01126899999873332333 1 111 12358999
Q ss_pred cCCCCEEEEE
Q 026389 226 SKDEDYLVVC 235 (239)
Q Consensus 226 s~dg~~lyva 235 (239)
++||++||++
T Consensus 155 ~~dG~~l~~~ 164 (326)
T PF13449_consen 155 SPDGRTLFAA 164 (326)
T ss_pred CCCCCEEEEE
Confidence 9999966654
No 117
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.65 E-value=0.052 Score=46.19 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=68.1
Q ss_pred ceEeccCCcCCcceEEEcCCCCEEEEe---CCCeEEEEec-CCcEEEeee--ccCcCccCeEEcCCCCEEEEeCCCCeEE
Q 026389 68 VTRLGEGILNGPEDVCVDRNGVLYTAT---RDGWIKRLHK-NGTWENWKL--IGGDTLLGITTTQENEILVCDADKGLLK 141 (239)
Q Consensus 68 ~~~l~~g~~~gPe~ia~d~~G~ly~~~---~~g~I~~~~~-~G~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~~~ 141 (239)
++..+-..-..-+|+.++.+|.||-++ ...+|.+++. +|++..... .....- |+++- +++||......+...
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~-~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITIL-GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEE-TTEEEEEESSSSEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEE-CCEEEEEEecCCeEE
Confidence 344444444567788997889999766 3458899996 466533222 223455 88885 568999888877766
Q ss_pred Ec-cCCceEEec-ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389 142 VT-EEGVTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE 209 (239)
Q Consensus 142 v~-~~g~~~l~~-~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~ 209 (239)
+. .+-.+.+.. .+.+. --|++-| +..+|.||.+ .+|+.+||++-+
T Consensus 114 ~yd~~tl~~~~~~~y~~E----GWGLt~d-g~~Li~SDGS------------------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGE----GWGLTSD-GKRLIMSDGS------------------SRLYFLDPETFK 160 (264)
T ss_dssp EEETTTTEEEEEEE-SSS------EEEEC-SSCEEEE-SS------------------SEEEEE-TTT-S
T ss_pred EEccccceEEEEEecCCc----ceEEEcC-CCEEEEECCc------------------cceEEECCcccc
Confidence 54 443333322 22332 3577744 3389999987 578888887643
No 118
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.60 E-value=0.067 Score=52.57 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=68.7
Q ss_pred cceEEEcCCCCEEEEe-CCCeEEEEec-C-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc---CC-ceEEe
Q 026389 79 PEDVCVDRNGVLYTAT-RDGWIKRLHK-N-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE---EG-VTVLA 151 (239)
Q Consensus 79 Pe~ia~d~~G~ly~~~-~~g~I~~~~~-~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~---~g-~~~l~ 151 (239)
=.+++|+|++.+.++. .|++|+.|+. . ...+++....+.+- |+.+||-|+.+.+.+..+.+++.. -| .+.+.
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence 3468999999888655 8999999974 2 23455566677888 999999999999999889888873 23 44444
Q ss_pred cccCCcc-ccccccEEEcCCCCEEEEe
Q 026389 152 SHVNGSR-INLADDLIAATDGSIYFSV 177 (239)
Q Consensus 152 ~~~~g~~-~~~pn~l~vd~dG~iy~td 177 (239)
+.++..+ -.+..-+...|||....+-
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecch
Confidence 4443221 1344567778898766653
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=0.052 Score=51.04 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.7
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEec
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLHK 104 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~ 104 (239)
..-|+++|.+.|+|+....+|.|..||.
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEec
Confidence 4567899999999998888888888885
No 120
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.53 E-value=0.12 Score=46.27 Aligned_cols=123 Identities=12% Similarity=0.115 Sum_probs=74.3
Q ss_pred CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEccCC--ceEEecccCCcc-ccccccEEEcC
Q 026389 95 RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTEEG--VTVLASHVNGSR-INLADDLIAAT 169 (239)
Q Consensus 95 ~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~~~g--~~~l~~~~~g~~-~~~pn~l~vd~ 169 (239)
.|++|..||. .+....-.+.+++-. .+.+..+| .|+.+.....+-.+|--+ +..... .+|.. -.-.+-+.+.|
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVFSP 397 (459)
T ss_pred cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEECC
Confidence 6777777773 333333344555555 66676777 577774433333344222 333221 12211 11256788888
Q ss_pred CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC---cceEEEcCCCCEEEEEe
Q 026389 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF---ANGVALSKDEDYLVVCE 236 (239)
Q Consensus 170 dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~---pnGia~s~dg~~lyvad 236 (239)
+|....+.+. +|+||.|+..+++++..+..-.. .+.++|++-|+.|+-++
T Consensus 398 d~~YvaAGS~-----------------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 398 DGSYVAAGSA-----------------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred CCceeeeccC-----------------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 8875555443 79999999999999887754332 46788999998887655
No 121
>PTZ00421 coronin; Provisional
Probab=96.51 E-value=0.24 Score=46.24 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=76.8
Q ss_pred cceEEEcCCC-C-EEEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389 79 PEDVCVDRNG-V-LYTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL 150 (239)
Q Consensus 79 Pe~ia~d~~G-~-ly~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l 150 (239)
-..++|.+++ + |.+++.|+.|..||.. ++. ..+........ .+++.++|+++++-...+.+++. .++ ...+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 4568999864 4 5566789999999964 443 22222233455 89999999988887777888775 345 2222
Q ss_pred ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe--EEEec-CCCCCcceEEEcC
Q 026389 151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILL-DSLFFANGVALSK 227 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~--~~~~~-~~l~~pnGia~s~ 227 (239)
... .+ .....+...+++..+++-..++ ...+.|..||..... ..... +......-..+++
T Consensus 207 ~~H-~~---~~~~~~~w~~~~~~ivt~G~s~-------------s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~ 269 (493)
T PTZ00421 207 EAH-AS---AKSQRCLWAKRKDLIITLGCSK-------------SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE 269 (493)
T ss_pred ecC-CC---CcceEEEEcCCCCeEEEEecCC-------------CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence 211 11 1123445566665555432110 114678888875332 11111 1111122235678
Q ss_pred CCCEEEEE
Q 026389 228 DEDYLVVC 235 (239)
Q Consensus 228 dg~~lyva 235 (239)
|++.||++
T Consensus 270 d~~~L~lg 277 (493)
T PTZ00421 270 DTNLLYIG 277 (493)
T ss_pred CCCEEEEE
Confidence 88877765
No 122
>PRK13684 Ycf48-like protein; Provisional
Probab=96.49 E-value=0.33 Score=42.89 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=33.8
Q ss_pred CcceEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeec----cCcCccCeEEcCCCCEEEEeCCCCeEEEccC
Q 026389 78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVTEE 145 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~----~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~ 145 (239)
...+|+|..+.+.|+....|.|++=...|+ |+..... ..+.+ .+.++. ++.|++-.. +.+....|
T Consensus 47 ~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~-~v~~~~-~~~~~~G~~-g~i~~S~D 116 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI-SISFKG-DEGWIVGQP-SLLLHTTD 116 (334)
T ss_pred ceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCccccccee-eeEEcC-CcEEEeCCC-ceEEEECC
Confidence 455677765556664445677777643443 4443211 12234 677753 456666543 44444433
No 123
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.47 E-value=0.0062 Score=36.20 Aligned_cols=28 Identities=25% Similarity=0.121 Sum_probs=24.0
Q ss_pred EecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389 212 ILLDSLFFANGVALSKDEDYLVVCETFK 239 (239)
Q Consensus 212 ~~~~~l~~pnGia~s~dg~~lyvadt~~ 239 (239)
.+..++..|+|+|++++++.||++|+.+
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~ 30 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGL 30 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCC
Confidence 3456789999999999999999999863
No 124
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.47 E-value=0.066 Score=51.20 Aligned_cols=139 Identities=10% Similarity=0.127 Sum_probs=89.9
Q ss_pred CcceEEEcC-CCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEE---
Q 026389 78 GPEDVCVDR-NGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVL--- 150 (239)
Q Consensus 78 gPe~ia~d~-~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l--- 150 (239)
.-.+|+|.| |.+.| .|+-||+|..|+. +-++..|.+...... .+++.|||+..|.....|..++. ..|.+..
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 456899998 55544 6779999988884 667777776665566 89999999988888788888876 3441111
Q ss_pred -e--cccCCccccccccEEEcCCC--CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc---e
Q 026389 151 -A--SHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN---G 222 (239)
Q Consensus 151 -~--~~~~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn---G 222 (239)
+ ..-.........|+.+.+-- .+.||... -||-.||....++.....|+...+ -
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQIS 551 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCccee
Confidence 1 11111122356777777643 58888654 477778875455544445544443 3
Q ss_pred EEEcCCCCEEEEE
Q 026389 223 VALSKDEDYLVVC 235 (239)
Q Consensus 223 ia~s~dg~~lyva 235 (239)
-.|+.||++|+.+
T Consensus 552 Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 552 ASFSSDGKHIVSA 564 (712)
T ss_pred eeEccCCCEEEEe
Confidence 5678888877543
No 125
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.47 E-value=0.099 Score=48.73 Aligned_cols=79 Identities=9% Similarity=0.225 Sum_probs=49.6
Q ss_pred CccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-------eEEEecC--------C---
Q 026389 156 GSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-------ETSILLD--------S--- 216 (239)
Q Consensus 156 g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-------~~~~~~~--------~--- 216 (239)
..++.+|.++++.+. |.+||+.....-..++ ....-+....|+|+||-+.++ +.++++. +
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~-~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~ 491 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDD-AANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS 491 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccc-cCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence 357889999999997 7999987663211000 000111234588888887765 3333321 1
Q ss_pred -------CCCcceEEEcCCCCEEEEEe
Q 026389 217 -------LFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 217 -------l~~pnGia~s~dg~~lyvad 236 (239)
+..|.+|+|++.|+ |+|++
T Consensus 492 ~~~~~~~f~~PDnl~fD~~Gr-LWi~T 517 (616)
T COG3211 492 ANINANWFNSPDNLAFDPWGR-LWIQT 517 (616)
T ss_pred cCcccccccCCCceEECCCCC-EEEEe
Confidence 44599999999999 45543
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.46 E-value=0.082 Score=51.38 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=78.3
Q ss_pred CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCC-CeEEEc-cCC--ceEEecccCCcccccc
Q 026389 88 GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTVLASHVNGSRINLA 162 (239)
Q Consensus 88 G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~-g~~~v~-~~g--~~~l~~~~~g~~~~~p 162 (239)
+.+.+++.++.|.++.. +++.........-|..-++++.+|+..++.+.. .+..++ .++ ..++... ++. .
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~ap----V 141 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAP----V 141 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCc----e
Confidence 35667788999999874 444332222223344378999999877776554 343444 444 4444332 221 3
Q ss_pred ccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc---------ceEEEcCCCCEEE
Q 026389 163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---------NGVALSKDEDYLV 233 (239)
Q Consensus 163 n~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p---------nGia~s~dg~~ly 233 (239)
-.+.++|+|.+..+.+- +|.|+.||.+++.+...++++..- +=++|+|+|.++.
T Consensus 142 l~l~~~p~~~fLAvss~-----------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSC-----------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred eeeeEcCCCCEEEEEec-----------------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 57899999988776554 699999999877765555543221 3367889866554
Q ss_pred E
Q 026389 234 V 234 (239)
Q Consensus 234 v 234 (239)
+
T Consensus 205 ~ 205 (933)
T KOG1274|consen 205 V 205 (933)
T ss_pred e
Confidence 4
No 127
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.45 E-value=0.29 Score=48.22 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=75.5
Q ss_pred cceEEEcCCCCEE-EEeCCCeEEEEecCC-----cE---EEe-eeccCcCccCeEEcCC-CCEEEEeCCCCeEEEc--cC
Q 026389 79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG-----TW---ENW-KLIGGDTLLGITTTQE-NEILVCDADKGLLKVT--EE 145 (239)
Q Consensus 79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~G-----~~---~~~-~~~~~~p~~Gl~~d~~-G~L~v~d~~~g~~~v~--~~ 145 (239)
-.+++|+++|.++ ++..++.|..|+.+. .. ... ........ ++++.+. ++.+++....|.+++. ..
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 3458999998866 666899999987432 10 000 11112334 6777653 5566665567777775 33
Q ss_pred C--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcce
Q 026389 146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG 222 (239)
Q Consensus 146 g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnG 222 (239)
+ ...+... . .....+++++ +|.+++|-+. .|.|..||..+++.............
T Consensus 565 ~~~~~~~~~H--~---~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~ 622 (793)
T PLN00181 565 SQLVTEMKEH--E---KRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICC 622 (793)
T ss_pred CeEEEEecCC--C---CCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEE
Confidence 4 2222211 1 2367899986 6888777654 47788888776554333222233445
Q ss_pred EEEc-CCCCEEEE
Q 026389 223 VALS-KDEDYLVV 234 (239)
Q Consensus 223 ia~s-~dg~~lyv 234 (239)
++|. ++|+.+.+
T Consensus 623 v~~~~~~g~~lat 635 (793)
T PLN00181 623 VQFPSESGRSLAF 635 (793)
T ss_pred EEEeCCCCCEEEE
Confidence 5553 34554443
No 128
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.43 E-value=0.15 Score=44.20 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=83.8
Q ss_pred CCcceEEEcCCC-------------CEEEEeCCCeEEEEecCC-------cEEEeee-ccCcCccCeEEcCC---CCEEE
Q 026389 77 NGPEDVCVDRNG-------------VLYTATRDGWIKRLHKNG-------TWENWKL-IGGDTLLGITTTQE---NEILV 132 (239)
Q Consensus 77 ~gPe~ia~d~~G-------------~ly~~~~~g~I~~~~~~G-------~~~~~~~-~~~~p~~Gl~~d~~---G~L~v 132 (239)
..|.|+++.... +..+++.+|+|.-|.+.- ....+.. ..+..+.|+++... ..||.
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 357777776321 234666888998887521 1222211 12333337777632 37999
Q ss_pred EeCCCCeEEEccCC-ceE-EecccCCc--cc-cccccEEEcCCCCEEEEeCCCCcCcccc-cccceeecCCceEEEEeCC
Q 026389 133 CDADKGLLKVTEEG-VTV-LASHVNGS--RI-NLADDLIAATDGSIYFSVASTKFGLHNW-GLDLLEAKPHGKLLKYDPS 206 (239)
Q Consensus 133 ~d~~~g~~~v~~~g-~~~-l~~~~~g~--~~-~~pn~l~vd~dG~iy~td~~~~~~~~~~-~~~~~e~~~~g~v~~~d~~ 206 (239)
+|...+.+.+.+.. ..+ +...+.+. |. ..|-+|..- .|+||||=.. ++- ..+-+.+.+.|.|-+||++
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~-----qd~~~~d~v~G~G~G~VdvFd~~ 230 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQ-----QDADRNDEVAGAGLGYVNVFTLN 230 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEe-----cCCcccccccCCCcceEEEEcCC
Confidence 99988888776333 211 11222221 21 235555433 5799998332 211 1223345678999999999
Q ss_pred CCeEEEecC--CCCCcceEEEcC
Q 026389 207 LNETSILLD--SLFFANGVALSK 227 (239)
Q Consensus 207 ~~~~~~~~~--~l~~pnGia~s~ 227 (239)
+.-++.+.. .|..|.||++.|
T Consensus 231 G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 231 GQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CcEEEEeccCCcccCCceeeeCh
Confidence 766776754 378899999976
No 129
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.42 E-value=0.17 Score=43.08 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=92.0
Q ss_pred eEeccCCcCCcceEEEcCCCCEEE-EeCCCeEEEEecC-Cc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLYT-ATRDGWIKRLHKN-GT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E 144 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly~-~~~~g~I~~~~~~-G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~ 144 (239)
.+...|--..-++++..+||+..+ ++.|+.+..||.. |+ .+.|......-+ ++++++|++-+|+.+....+.+. -
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeee
Confidence 333444334456788889998774 5689999999964 44 344554455567 99999999988887776666665 2
Q ss_pred CC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCc
Q 026389 145 EG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFA 220 (239)
Q Consensus 145 ~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~p 220 (239)
-| .-.+.+. + .-...+-+.+.|+- +.|+...+ + .+.|-.+|.++-+++... ..-.+-
T Consensus 135 ~g~ck~t~~~~--~-~~~WVscvrfsP~~~~p~Ivs~s--~--------------DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 135 LGVCKYTIHED--S-HREWVSCVRFSPNESNPIIVSAS--W--------------DKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred cccEEEEEecC--C-CcCcEEEEEEcCCCCCcEEEEcc--C--------------CceEEEEccCCcchhhccccccccE
Confidence 33 2222211 1 13467778888885 55555544 2 466777888766654433 334567
Q ss_pred ceEEEcCCCCE
Q 026389 221 NGVALSKDEDY 231 (239)
Q Consensus 221 nGia~s~dg~~ 231 (239)
|-+++||||..
T Consensus 196 ~t~~vSpDGsl 206 (315)
T KOG0279|consen 196 NTVTVSPDGSL 206 (315)
T ss_pred EEEEECCCCCE
Confidence 88999999984
No 130
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.39 E-value=0.043 Score=49.07 Aligned_cols=135 Identities=15% Similarity=0.114 Sum_probs=76.5
Q ss_pred ceEEEcCCCCEEEEe-CCCeEEEEecC-CcE-EEeeec-cCcCccCeEEcCCCCEEEEe-CCCCeEEEccCCceEEeccc
Q 026389 80 EDVCVDRNGVLYTAT-RDGWIKRLHKN-GTW-ENWKLI-GGDTLLGITTTQENEILVCD-ADKGLLKVTEEGVTVLASHV 154 (239)
Q Consensus 80 e~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~-~~~~~~-~~~p~~Gl~~d~~G~L~v~d-~~~g~~~v~~~g~~~l~~~~ 154 (239)
.=|.|+||.+-.+++ .+..+..||.+ |.. ..+... +..+- ..++-+||.=+|+. ...+++..+.||.. ...-
T Consensus 273 ~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~-sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W 349 (519)
T KOG0293|consen 273 SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS-SCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNW 349 (519)
T ss_pred EEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc-eeEEccCCceeEecCCCCcEEEecCCcch--hhcc
Confidence 347888877655544 55567777753 443 222222 22333 67788999655554 44566677767611 1122
Q ss_pred CCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEE
Q 026389 155 NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV 233 (239)
Q Consensus 155 ~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~ly 233 (239)
+|.+.....|+++.+|| .++..... .++..|+..+..-+.++..-..-...++|.||++++
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d------------------~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVD------------------KKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL 411 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecc------------------cceeeechhhhhhhccccccCceeEEEEcCCCcEEE
Confidence 34444457899999999 45554432 345555544322222333333446678888888776
Q ss_pred EE
Q 026389 234 VC 235 (239)
Q Consensus 234 va 235 (239)
|+
T Consensus 412 vn 413 (519)
T KOG0293|consen 412 VN 413 (519)
T ss_pred EE
Confidence 65
No 131
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.36 E-value=0.28 Score=45.58 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=63.3
Q ss_pred CCCEEEEeCCCeEEEEec-CCcEEEeeeccC----------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEeccc
Q 026389 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG----------DTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASHV 154 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~----------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~~ 154 (239)
+|++|+++.+++|+.+|. +|+.. |..... ... |+++..++++|+.+....++.+| .+|..+.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVL-WRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhh-ceeCCCCCccccccccccC-CcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 789999999999999996 56532 211110 122 44443337999998877788888 57733222111
Q ss_pred CCc---cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 155 NGS---RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 155 ~g~---~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
.+. ....-....++ +|.+|+......+. .....|.|+.+|.++|+.
T Consensus 139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFF---------ACGVRGALRAYDVETGKL 187 (488)
T ss_pred CCCcCcceEecCCCEEE-CCEEEEeccccccc---------cCCCCcEEEEEECCCCce
Confidence 111 00011233444 37788765432110 011257899999988875
No 132
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.36 E-value=0.2 Score=43.47 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=60.8
Q ss_pred CEEEEe-CCCeEEEEecCCcE-E---Eee----eccCcCccCeEEcCCCCEEEEeCC-------------CCeEEEc-cC
Q 026389 89 VLYTAT-RDGWIKRLHKNGTW-E---NWK----LIGGDTLLGITTTQENEILVCDAD-------------KGLLKVT-EE 145 (239)
Q Consensus 89 ~ly~~~-~~g~I~~~~~~G~~-~---~~~----~~~~~p~~Gl~~d~~G~L~v~d~~-------------~g~~~v~-~~ 145 (239)
.||.++ ++++|-.+|..=+. . .|. ..+-.|. ++.. -.|+|||+-+. .|.+.+. .+
T Consensus 153 ~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPF-nIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~ 230 (336)
T TIGR03118 153 YLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPF-NVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN 230 (336)
T ss_pred eEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCc-ceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC
Confidence 566555 66777776532111 0 011 1234577 7765 35799997532 2345443 56
Q ss_pred C--ceEEecccCCccccccccEEEcCC------CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 146 G--VTVLASHVNGSRINLADDLIAATD------GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 146 g--~~~l~~~~~g~~~~~pn~l~vd~d------G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
| ++.+. .+.+++.|.+|+++|. |.|.|.+.. .|+|-.||+.+++.
T Consensus 231 G~l~~r~a---s~g~LNaPWG~a~APa~FG~~sg~lLVGNFG-----------------DG~InaFD~~sG~~ 283 (336)
T TIGR03118 231 GQLLRRVA---SSGRLNAPWGLAIAPESFGSLSGALLVGNFG-----------------DGTINAYDPQSGAQ 283 (336)
T ss_pred CcEEEEec---cCCcccCCceeeeChhhhCCCCCCeEEeecC-----------------CceeEEecCCCCce
Confidence 6 44443 3557999999999873 456666643 69999999986653
No 133
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.31 E-value=0.097 Score=45.48 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=66.3
Q ss_pred cCcCccCeEEcCCC-CEEEEeCCCCe--EEEc-cCC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCccccc
Q 026389 115 GGDTLLGITTTQEN-EILVCDADKGL--LKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWG 188 (239)
Q Consensus 115 ~~~p~~Gl~~d~~G-~L~v~d~~~g~--~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~ 188 (239)
..|.+ |+++++.. ..++.-..-|. +.+| .+| ........++.-| -=-.++++||+ +|.|+.. |
T Consensus 4 P~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF--yGHg~fs~dG~~LytTEnd--~------ 72 (305)
T PF07433_consen 4 PARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF--YGHGVFSPDGRLLYTTEND--Y------ 72 (305)
T ss_pred Ccccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE--ecCEEEcCCCCEEEEeccc--c------
Confidence 45777 88888754 33333333333 3456 466 3333333344322 22468889995 6666654 2
Q ss_pred ccceeecCCceEEEEeCCCC--eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389 189 LDLLEAKPHGKLLKYDPSLN--ETSILLDSLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 189 ~~~~e~~~~g~v~~~d~~~~--~~~~~~~~l~~pnGia~s~dg~~lyvadt~ 238 (239)
..+.|.|-+||...+ ++..+.+.--.|.-|.+.|||++|+|++-+
T Consensus 73 -----~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 73 -----ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred -----CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 234699999998722 233344556679999999999999999753
No 134
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.29 E-value=0.021 Score=33.83 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEc
Q 026389 169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226 (239)
Q Consensus 169 ~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s 226 (239)
|+| ++|+++.. .+.|..+|+.+++...-+.....|.+++|+
T Consensus 1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 355 69999864 578999999888776655556889999985
No 135
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.20 E-value=0.094 Score=47.92 Aligned_cols=133 Identities=18% Similarity=0.148 Sum_probs=75.6
Q ss_pred EEcCCCC--EEEEe--CC-CeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEccCC--ceEE
Q 026389 83 CVDRNGV--LYTAT--RD-GWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVTEEG--VTVL 150 (239)
Q Consensus 83 a~d~~G~--ly~~~--~~-g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~~~g--~~~l 150 (239)
+|.+++. .|+.. .. .+|+.++.+ |+........+.-. .-+|.+||+ |.++.... .++..|.++ ...|
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L 277 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL 277 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec
Confidence 5555553 34433 22 357777753 44444444444444 566778884 44443333 344555444 3332
Q ss_pred ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389 151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg 229 (239)
. ...| .+ ..=.+.||| .|+|+.... +.-+||++|+++++++.+......-.--.++|||
T Consensus 278 t-~~~g--i~--~~Ps~spdG~~ivf~Sdr~---------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG 337 (425)
T COG0823 278 T-NGFG--IN--TSPSWSPDGSKIVFTSDRG---------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDG 337 (425)
T ss_pred c-cCCc--cc--cCccCCCCCCEEEEEeCCC---------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCC
Confidence 2 2222 11 144667899 577764331 1248999999988887777666655567789999
Q ss_pred CEEEEEe
Q 026389 230 DYLVVCE 236 (239)
Q Consensus 230 ~~lyvad 236 (239)
+++.+..
T Consensus 338 ~~i~~~~ 344 (425)
T COG0823 338 DKIVFES 344 (425)
T ss_pred CEEEEEe
Confidence 9887654
No 136
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.18 E-value=0.021 Score=49.54 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=49.6
Q ss_pred ceEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEE
Q 026389 68 VTRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVC 133 (239)
Q Consensus 68 ~~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~ 133 (239)
-+.+.+| +.-||+..|. +|+||+.+ ..|+|.++|++ |+.+......+.|. ||.+. |++++.
T Consensus 195 ~evl~~G-LsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r-GL~f~--G~llvV 257 (335)
T TIGR03032 195 GEVVASG-LSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR-GLAFA--GDFAFV 257 (335)
T ss_pred CCEEEcC-ccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc-cccee--CCEEEE
Confidence 3556666 6778887876 78999877 88999999986 99888888899999 99997 766544
No 137
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.18 E-value=0.13 Score=50.65 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=79.6
Q ss_pred CcceEEEcCCCC-EEEEeCCCeEEEEecC-----------C---cEEEe------eeccCcCccCeEEcCCCCEEEEeCC
Q 026389 78 GPEDVCVDRNGV-LYTATRDGWIKRLHKN-----------G---TWENW------KLIGGDTLLGITTTQENEILVCDAD 136 (239)
Q Consensus 78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-----------G---~~~~~------~~~~~~p~~Gl~~d~~G~L~v~d~~ 136 (239)
.-.++-|.+||. +++|+.|.-|..|... | .++.| ....+.-. .+.+++++.++|.-+.
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSL 149 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEecc
Confidence 344567999985 5566666555444432 1 12222 22234455 7888899999998777
Q ss_pred CCeEEEc-c-CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE
Q 026389 137 KGLLKVT-E-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI 212 (239)
Q Consensus 137 ~g~~~v~-~-~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~ 212 (239)
.+.+.+. . .. .+++. |. ...+-|+++||-|..+.|.+. ...|..|....-.++.
T Consensus 150 DnsViiwn~~tF~~~~vl~----~H-~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLR----GH-QSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTSDWGIEK 207 (942)
T ss_pred cceEEEEccccceeeeeee----cc-cccccceEECCccCeeeeecC-----------------CceEEEEEcccceeeE
Confidence 6666665 2 22 33332 21 135779999999997776654 3445555533333444
Q ss_pred ecCCC-------CCcceEEEcCCCCEEEEEeC
Q 026389 213 LLDSL-------FFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 213 ~~~~l-------~~pnGia~s~dg~~lyvadt 237 (239)
.++.. .+-.=+.+||||++|-+...
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 44331 12233678999998866543
No 138
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.18 E-value=0.068 Score=47.65 Aligned_cols=106 Identities=24% Similarity=0.326 Sum_probs=65.1
Q ss_pred EcCCCCEEEEeCCCeEEEEecCCcEEEeeeccC----cCccCeEEcCCCCEEEEeCCCCeEEEcc-CCceEEecccCCcc
Q 026389 84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG----DTLLGITTTQENEILVCDADKGLLKVTE-EGVTVLASHVNGSR 158 (239)
Q Consensus 84 ~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~----~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g~~~l~~~~~g~~ 158 (239)
.+.+|++|+...+|+|+.+++++-...|..... ... +-.+..+|+||+.+....++.++. +|.........+.
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~- 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGS- 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCC-
Confidence 556899999999999999998654434532221 222 222334899999998766778885 8833332222221
Q ss_pred ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 159 ~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
+. ..+-.+-.+|.+|+... .|.++.+|.++|+.
T Consensus 143 ~~-~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~ 175 (370)
T COG1520 143 PY-YASPPVVGDGTVYVGTD------------------DGHLYALNADTGTL 175 (370)
T ss_pred eE-EecCcEEcCcEEEEecC------------------CCeEEEEEccCCcE
Confidence 11 22334555788888742 35677777776654
No 139
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.15 E-value=0.1 Score=46.66 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=90.6
Q ss_pred cCCcceEEEcCCC-CEEEEeCCCeEEEEecCCcE-EEeeec-cCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCCceE-
Q 026389 76 LNGPEDVCVDRNG-VLYTATRDGWIKRLHKNGTW-ENWKLI-GGDTLLGITTTQENE-ILVCDADKGLLKVT-EEGVTV- 149 (239)
Q Consensus 76 ~~gPe~ia~d~~G-~ly~~~~~g~I~~~~~~G~~-~~~~~~-~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g~~~- 149 (239)
...+.+.+|-||| ++.+|+.|+.|..++-||+. ..|... ..+-. .+++..||+ ++.......+..++ ++.+..
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~-dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~ 390 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH-DLAITYDGKYVLLVTVDKKIRLYNREARVDRG 390 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE-EEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence 3578889999998 56688899999999998853 333221 13456 888888995 55555444444333 222111
Q ss_pred EecccCCccccccccEEEcCCCCEEEEeCCCC----cCccc-----------------------cccc-ceeecCCceEE
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSVASTK----FGLHN-----------------------WGLD-LLEAKPHGKLL 201 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~----~~~~~-----------------------~~~~-~~e~~~~g~v~ 201 (239)
+... ..+ ...+.+..||.+...+-... |.+++ .... ++.+...++||
T Consensus 391 lise--~~~---its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 391 LISE--EQP---ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred cccc--cCc---eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 2222 112 35677888887766654321 22211 0112 33567789999
Q ss_pred EEeCCCCeEEEecCCC-CCcceEEEcCCCC
Q 026389 202 KYDPSLNETSILLDSL-FFANGVALSKDED 230 (239)
Q Consensus 202 ~~d~~~~~~~~~~~~l-~~pnGia~s~dg~ 230 (239)
.++..++++...+.|- ..-|-|+++|...
T Consensus 466 IWhr~sgkll~~LsGHs~~vNcVswNP~~p 495 (519)
T KOG0293|consen 466 IWHRISGKLLAVLSGHSKTVNCVSWNPADP 495 (519)
T ss_pred EEEccCCceeEeecCCcceeeEEecCCCCH
Confidence 9999988876666553 3457777776443
No 140
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.11 E-value=0.57 Score=42.46 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=57.8
Q ss_pred EEcCCCCEEEEeCCCeEEEEecCCc--EEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ce---EEecccC
Q 026389 83 CVDRNGVLYTATRDGWIKRLHKNGT--WENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVTEEG-VT---VLASHVN 155 (239)
Q Consensus 83 a~d~~G~ly~~~~~g~I~~~~~~G~--~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~---~l~~~~~ 155 (239)
...++|.+++....|.+++-..+|+ |+..... ...-. ++.+..+|.+|++....+++.-..+| .. .+.....
T Consensus 245 ~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~ 323 (398)
T PLN00033 245 NRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADI 323 (398)
T ss_pred EEcCCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCEEEEeCCceEEEecCCCCcccccceeeccc
Confidence 4456777776666777777655564 3443332 23334 88888999999988766666555555 21 2221111
Q ss_pred CccccccccEEEcCCCCEEEEeCC
Q 026389 156 GSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 156 g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
......+.++.+.+++.+|++-..
T Consensus 324 ~~~~~~l~~v~~~~d~~~~a~G~~ 347 (398)
T PLN00033 324 KSRGFGILDVGYRSKKEAWAAGGS 347 (398)
T ss_pred CCCCcceEEEEEcCCCcEEEEECC
Confidence 111123678888888998887654
No 141
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.10 E-value=0.13 Score=47.22 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=76.1
Q ss_pred CCCCCcccccceEecc----CCcCCcceEEEcCCCCEE-EEeCCCeEEEEecCCcEEE-----e--eeccCcCccCeEEc
Q 026389 58 LIPTTSDIQSVTRLGE----GILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWEN-----W--KLIGGDTLLGITTT 125 (239)
Q Consensus 58 ~~~~n~~l~~~~~l~~----g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~~~~-----~--~~~~~~p~~Gl~~d 125 (239)
+|..|+...+.+.|.. |.-.-|...+|+++|.++ .++.||.|-.|+. |.+.+ + +...+.-.+.++|.
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEec
Confidence 5666766666666544 223357789999999887 5669999999985 32211 1 12222222278999
Q ss_pred CCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCccc-cccccEEEcCCCCEEEEeCCC
Q 026389 126 QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI-NLADDLIAATDGSIYFSVAST 180 (239)
Q Consensus 126 ~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~-~~pn~l~vd~dG~iy~td~~~ 180 (239)
.+|+.+.+-...+.+++. ... .+.|.. ..|-+- .--.++++.|+..|++|..+.
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~-~tgL~t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNV-RTGLPTPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred cccchhhhccCCCceeeeeccccccchhh-hcCCCccCCCCccccCCCceEEEecccc
Confidence 999988887777777775 222 222221 111111 113689999999999998774
No 142
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.96 E-value=0.2 Score=43.08 Aligned_cols=129 Identities=16% Similarity=0.245 Sum_probs=73.7
Q ss_pred EEEcCCCCEEEEe-CCCeEEEEecCCcEEEee---eccCcCccCeEEcCCCCEEE-EeCCCCeEEEc-cCCceEEecccC
Q 026389 82 VCVDRNGVLYTAT-RDGWIKRLHKNGTWENWK---LIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEGVTVLASHVN 155 (239)
Q Consensus 82 ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~---~~~~~p~~Gl~~d~~G~L~v-~d~~~g~~~v~-~~g~~~l~~~~~ 155 (239)
+.|+|+|..+++. .|..|+.|+..|.-+.+. ...+... ++.+.+|++.++ |...+.++..| +.|..+......
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h 131 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH 131 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhccc
Confidence 5788999888554 899999998766433322 2234556 788889997554 55556666667 566222211111
Q ss_pred CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC
Q 026389 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230 (239)
Q Consensus 156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~ 230 (239)
. .+.|-+.....|-..+...+ ..|.+-.||..+++.......-+.-..++|..+++
T Consensus 132 ~---~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 132 T---SFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD 187 (338)
T ss_pred c---ceeeecCccccCCeEEEecC----------------CCceEEEEeecccchhhccccceeEEEEEeccccc
Confidence 1 45677776666755555443 24677777776444333333333334444444433
No 143
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=95.91 E-value=0.38 Score=40.08 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=77.3
Q ss_pred cccceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec--CC-c-----EEEeeec-cCcCccCeEEcCCCCEEEEeC
Q 026389 65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK--NG-T-----WENWKLI-GGDTLLGITTTQENEILVCDA 135 (239)
Q Consensus 65 l~~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~--~G-~-----~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~ 135 (239)
+..+..|+.| ..+=..|+..|+|+||.... +.+++..+ ++ + -+.+... =.+=. .|.+++.|-||..+.
T Consensus 23 ~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 23 SDRAITIGSG-WNNFRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVTP 99 (229)
T ss_dssp HHHSEEEESS--TT-SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEET
T ss_pred cchhhhcCcc-ccccceEEEcCCceEEEEEC-CceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEecc
Confidence 4566777775 45667788999999997664 48888732 22 1 1222211 01223 588899999999888
Q ss_pred CCCeEEEc-c-CC-ceEEe---cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE-eCCCC
Q 026389 136 DKGLLKVT-E-EG-VTVLA---SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLN 208 (239)
Q Consensus 136 ~~g~~~v~-~-~g-~~~l~---~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~-d~~~~ 208 (239)
...+++.. + ++ ..... +...+..-+..+-+-.+++|.||.-+.. |++++. .|+.+
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~ 161 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG 161 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence 65666665 2 33 22211 2221223444677888999999987754 678887 44432
Q ss_pred e-------EEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 209 E-------TSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 209 ~-------~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
. ..+...+...+.-|.++++|. ||..++
T Consensus 162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~ 196 (229)
T PF14517_consen 162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS 196 (229)
T ss_dssp T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E
T ss_pred CCccccccceeccCCcccceEEeeCCCCc-EEEEec
Confidence 1 112223444466788888886 554443
No 144
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.90 E-value=0.073 Score=48.87 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=78.6
Q ss_pred ceEEEcCC--CCEEEEeCCCeEEEEecCC---cEEEeeec---cCc--CccCeEEcCCCCEEEEeCCCCeEEEccCC---
Q 026389 80 EDVCVDRN--GVLYTATRDGWIKRLHKNG---TWENWKLI---GGD--TLLGITTTQENEILVCDADKGLLKVTEEG--- 146 (239)
Q Consensus 80 e~ia~d~~--G~ly~~~~~g~I~~~~~~G---~~~~~~~~---~~~--p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g--- 146 (239)
.+..|.|. +.+.+++.||.+..|+.+. +.+++... +.| +. -+++++||.++.+.-..|-+.+...|
T Consensus 272 t~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t-sC~~nrdg~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 272 TCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT-SCAWNRDGKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred eccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce-eeecCCCcchhhhcccCCceeeeecCCcc
Confidence 34456652 3445666778777777543 23444322 222 44 78899999998877778888887423
Q ss_pred ceE--EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEecCCCCCc---
Q 026389 147 VTV--LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFA--- 220 (239)
Q Consensus 147 ~~~--l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~~~~l~~p--- 220 (239)
+.. .+.... .+-....-|++..||++..+-+. .+.+-.||... ++.-....+|..+
T Consensus 351 v~p~~~vk~AH-~~g~~Itsi~FS~dg~~LlSRg~-----------------D~tLKvWDLrq~kkpL~~~tgL~t~~~~ 412 (641)
T KOG0772|consen 351 VRPVMKVKDAH-LPGQDITSISFSYDGNYLLSRGF-----------------DDTLKVWDLRQFKKPLNVRTGLPTPFPG 412 (641)
T ss_pred cccceEeeecc-CCCCceeEEEeccccchhhhccC-----------------CCceeeeeccccccchhhhcCCCccCCC
Confidence 222 121111 11124577899999998877543 35566666542 2332333455433
Q ss_pred ceEEEcCCCCEEEE
Q 026389 221 NGVALSKDEDYLVV 234 (239)
Q Consensus 221 nGia~s~dg~~lyv 234 (239)
..++||||.+.|+.
T Consensus 413 tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 413 TDCCFSPDDKLILT 426 (641)
T ss_pred CccccCCCceEEEe
Confidence 56889999885543
No 145
>PTZ00420 coronin; Provisional
Probab=95.89 E-value=0.76 Score=43.61 Aligned_cols=65 Identities=3% Similarity=-0.070 Sum_probs=44.2
Q ss_pred CcceEEEcCCCC-EE-EEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 78 GPEDVCVDRNGV-LY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 78 gPe~ia~d~~G~-ly-~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
.-.+++|+|++. ++ +++.|+.|..||.. ++...-........ .++++++|+++++....+.+++.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIw 194 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHII 194 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEE
Confidence 346789999775 43 55689999999964 43221112234456 89999999998877666777765
No 146
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.88 E-value=0.12 Score=46.24 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=71.7
Q ss_pred EEcCCC-CEE-EEeC--CCeEEEEec-CCcEEEeeecc-CcCccCeEEcCCC-CEEEEeCCCCeEEEc-cCC-ceEEecc
Q 026389 83 CVDRNG-VLY-TATR--DGWIKRLHK-NGTWENWKLIG-GDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASH 153 (239)
Q Consensus 83 a~d~~G-~ly-~~~~--~g~I~~~~~-~G~~~~~~~~~-~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~g-~~~l~~~ 153 (239)
+|.++| .|+ .++. ...++.+|. +++.+.+.+.. .... |..+.++. .+|.......+++++ ..+ .+++...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 566677 344 4443 457888886 45665555433 2344 66666555 454454557888998 555 5555443
Q ss_pred cCCccccccccEEEcCCCCEEEEeCCCC--cC-c--ccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcC
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVASTK--FG-L--HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK 227 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~--~~-~--~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~ 227 (239)
.++ +..--..+++.|++.++.....+ +. . .....++++.++..+|+++|.++|+.+++...-..-+-+.+||
T Consensus 121 p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 121 PDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp -TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred Ccc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 222 11111233467888776543211 10 0 1134567788899999999999999999886655556666766
No 147
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.88 E-value=0.081 Score=50.38 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=72.2
Q ss_pred eEeccCCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-- 143 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-- 143 (239)
.++..|-+..-.++.|.|+.+.. +++.|.++..||. .|. ++.|.. ...|.+.+++.++|+-+++....|++.+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 34455555555678888876544 7778899988985 454 455533 33444489999999988877777888876
Q ss_pred cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
.+| +..+... . .-.+.+.+..||.+.++++.
T Consensus 607 ~~~~~v~~l~~H-t----~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 607 ANGSLVKQLKGH-T----GTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred CCCcchhhhhcc-c----CceeEEEEecCCCEEEecCC
Confidence 455 3333333 2 24678999999999998766
No 148
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.87 E-value=0.13 Score=48.98 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=62.0
Q ss_pred CeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecC
Q 026389 121 GITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP 196 (239)
Q Consensus 121 Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~ 196 (239)
.+.|+|+.+...+.+....+++. ..| ++++..+. .....+++.|+|+...+...
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-----~~V~al~~Sp~Gr~LaSg~e----------------- 597 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-----GPVTALAFSPCGRYLASGDE----------------- 597 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-----CceEEEEEcCCCceEeeccc-----------------
Confidence 47788877666666666777775 466 66653321 23568999999987666544
Q ss_pred CceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCCEEEE
Q 026389 197 HGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVV 234 (239)
Q Consensus 197 ~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~~lyv 234 (239)
.|.|..||..+++..... +.-..-+.|.||.||..|.+
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence 588999999876654333 33334577999999986544
No 149
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.86 E-value=0.17 Score=45.04 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=28.4
Q ss_pred eEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec-CC
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK-NG 106 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G 106 (239)
.+...|-...-.+|.|.-+|.||.++.|++|..|+. +|
T Consensus 240 ~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred EEEeccCccceEEEEEcCCceEEecCCCceEEEEEccch
Confidence 344445445566788888999999999999988875 44
No 150
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.83 E-value=0.021 Score=33.76 Aligned_cols=33 Identities=6% Similarity=-0.040 Sum_probs=26.8
Q ss_pred cccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389 158 RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL 207 (239)
Q Consensus 158 ~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~ 207 (239)
.+..|+++++|+.+ ++||+|.. .+.+++++.++
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~-----------------~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWG-----------------LDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCC-----------------CCEEEEEeCCC
Confidence 45679999999985 89999987 36788888764
No 151
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.71 E-value=0.92 Score=40.10 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=76.1
Q ss_pred EEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceE-EecccC
Q 026389 82 VCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTV-LASHVN 155 (239)
Q Consensus 82 ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~-l~~~~~ 155 (239)
++.+|+-++. ++..|.+-+.|+. +|++..-........+.+.|..+|.++++-.-.|.+++. ..| .+. +....
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~- 148 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV- 148 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc-
Confidence 4555655555 4446666666664 454211111111222267788899888887667888876 345 332 32122
Q ss_pred CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEE
Q 026389 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVV 234 (239)
Q Consensus 156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyv 234 (239)
.-..-+...|.+.|.++.+. .|.+|.|....+....+..+-..| +-=.|.|||+.++.
T Consensus 149 ----~dieWl~WHp~a~illAG~~-----------------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 149 ----EDIEWLKWHPRAHILLAGST-----------------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred ----CceEEEEecccccEEEeecC-----------------CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 22445677788877776554 588999887764454555443333 33357788887765
Q ss_pred Ee
Q 026389 235 CE 236 (239)
Q Consensus 235 ad 236 (239)
..
T Consensus 208 gy 209 (399)
T KOG0296|consen 208 GY 209 (399)
T ss_pred Ee
Confidence 43
No 152
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.71 E-value=0.34 Score=44.08 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=48.6
Q ss_pred CCcceEEEcCCCCEE-EEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCC-CCeEEEc-cCC-ceEE
Q 026389 77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVL 150 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-~g~~~v~-~~g-~~~l 150 (239)
..-.+++|..+|.+. +++.+|.+..|+.+|.. .++....+... .|.+.++|+-+++... +.++..| ..| ..+.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~-slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIF-SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceE-EEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 455678999999877 67799999999998864 34444434444 8889888865555433 3444445 456 4443
No 153
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.68 E-value=0.28 Score=43.95 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=81.7
Q ss_pred CcceEEEcCCCCEEEEe-C--CCeEEEEecCCcEEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CCceEEec
Q 026389 78 GPEDVCVDRNGVLYTAT-R--DGWIKRLHKNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVTE-EGVTVLAS 152 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~-~--~g~I~~~~~~G~~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g~~~l~~ 152 (239)
+--+|+|.+||.|..+. . -+|||=+. .|+-..+... ....+ ++.|+++|..+.+-+..+..+|.+ -+.+.+..
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~L~gH~k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMFLAGHIKEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecc-cCcEEEEeccccccee-eEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 45579999999998554 3 35665553 5654444333 34455 999999999988888888888862 33111111
Q ss_pred ccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-EEecCCCCCcceEEEcCCCC
Q 026389 153 HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVALSKDED 230 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~~~~~~l~~pnGia~s~dg~ 230 (239)
..+. -+-..++.+.|+ |...+|.+. .+.+-.|...+.+. ..++..-...-++.+++|++
T Consensus 383 -ipAH-~nlVS~Vk~~p~~g~fL~Tasy-----------------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 383 -IPAH-SNLVSQVKYSPQEGYFLVTASY-----------------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQ 443 (459)
T ss_pred -cccc-cchhhheEecccCCeEEEEccc-----------------CcceeeecCCCcccchhhcCCccceEEEEeccCCc
Confidence 1110 134678899984 677777654 34455565555443 23333334556677788887
Q ss_pred EEE
Q 026389 231 YLV 233 (239)
Q Consensus 231 ~ly 233 (239)
++.
T Consensus 444 ~i~ 446 (459)
T KOG0272|consen 444 AIA 446 (459)
T ss_pred eEE
Confidence 553
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.66 E-value=1.3 Score=38.63 Aligned_cols=140 Identities=15% Similarity=0.109 Sum_probs=73.4
Q ss_pred CcceEEEcCCCCEEE-EeCCCeEEEEecCC---cEEEe---eeccCcCccCeEEcCCCC-EEEEeCCCCeEEE---c--c
Q 026389 78 GPEDVCVDRNGVLYT-ATRDGWIKRLHKNG---TWENW---KLIGGDTLLGITTTQENE-ILVCDADKGLLKV---T--E 144 (239)
Q Consensus 78 gPe~ia~d~~G~ly~-~~~~g~I~~~~~~G---~~~~~---~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v---~--~ 144 (239)
.-.+++|.+||.-+. .+.|+.|..|+.+. +-..+ .-+.++|. -++|.+|-+ ++|+-.....+++ + .
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 356899999997664 45778777777421 11111 11235788 899987765 4444333333333 2 2
Q ss_pred CC-ceEEecccCCc---ccccc--ccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC
Q 026389 145 EG-VTVLASHVNGS---RINLA--DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF 218 (239)
Q Consensus 145 ~g-~~~l~~~~~g~---~~~~p--n~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~ 218 (239)
+| ...-....+.. .-... -++-++ ++..|+...+. .-.|..|+.++..+..+-++-.
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~----------------dt~i~lw~lkGq~L~~idtnq~ 229 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASL----------------DTKICLWDLKGQLLQSIDTNQS 229 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeec-CCceEEEEecC----------------CCcEEEEecCCceeeeeccccc
Confidence 45 22211111110 00111 123333 33444444331 3468888888554555555544
Q ss_pred CcceEEEcCCCCEEEEE
Q 026389 219 FANGVALSKDEDYLVVC 235 (239)
Q Consensus 219 ~pnGia~s~dg~~lyva 235 (239)
.-...++||||+++-++
T Consensus 230 ~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVS 246 (420)
T ss_pred cccceeeCCCCcEEEEe
Confidence 55567899999987654
No 155
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.61 E-value=0.54 Score=40.85 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=53.6
Q ss_pred eEEEcCCCCEE--EEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCC---CEEEEeCCCCeEEEccCC-ceEEec
Q 026389 81 DVCVDRNGVLY--TATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQEN---EILVCDADKGLLKVTEEG-VTVLAS 152 (239)
Q Consensus 81 ~ia~d~~G~ly--~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G---~L~v~d~~~g~~~v~~~g-~~~l~~ 152 (239)
.+|++ | .| .|+.|.+|+.||-.- +...+....+..+ .+.|+..- .|+.+. ..|.+.+...| -+.+ +
T Consensus 48 avAVs--~-~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~~~~W~~~-~ 121 (362)
T KOG0294|consen 48 ALAVS--G-PYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWRVGSWELL-K 121 (362)
T ss_pred EEEec--c-eeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEEcCCeEEe-e
Confidence 45654 3 44 345889999998432 2222333456666 77776443 455443 35666666544 3322 2
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCC
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
...+... ..|++++.|.|.|-++-..
T Consensus 122 slK~H~~-~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 122 SLKAHKG-QVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred eeccccc-ccceeEecCCCceEEEEcC
Confidence 2222222 2899999999999888754
No 156
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.57 E-value=0.23 Score=44.28 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=54.6
Q ss_pred EEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccC--cCccCeEEcCCCCEEEEeCCCCeEEEcc-CC-ceEEecccCCc
Q 026389 83 CVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLLKVTE-EG-VTVLASHVNGS 157 (239)
Q Consensus 83 a~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~--~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~~~l~~~~~g~ 157 (239)
....+|+||+++.+++++.+|. +|+..-.....+ .-. +-.+-.++.+|+......++.++. +| ...-.....+.
T Consensus 107 ~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~ 185 (370)
T COG1520 107 ILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPL 185 (370)
T ss_pred eEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcc
Confidence 3334899999999999999998 786532222222 122 333346788888864467788884 57 33322211101
Q ss_pred cccccccEEEcCCCCEEEEeC
Q 026389 158 RINLADDLIAATDGSIYFSVA 178 (239)
Q Consensus 158 ~~~~pn~l~vd~dG~iy~td~ 178 (239)
......... ..+|.+|++..
T Consensus 186 ~~~~~~~~~-~~~~~vy~~~~ 205 (370)
T COG1520 186 SLSIYGSPA-IASGTVYVGSD 205 (370)
T ss_pred ccccccCce-eecceEEEecC
Confidence 222222233 66788998865
No 157
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.52 E-value=0.12 Score=48.15 Aligned_cols=96 Identities=21% Similarity=0.335 Sum_probs=64.1
Q ss_pred EEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCc---cCeEEcCCCCEEEEeCCCCeEEEcc-CC-c-eEEecccCC
Q 026389 83 CVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTL---LGITTTQENEILVCDADKGLLKVTE-EG-V-TVLASHVNG 156 (239)
Q Consensus 83 a~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~---~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~-~~l~~~~~g 156 (239)
.+|++|.+|+++.++-+.|++....+.++.+..+-|. ..|.-|++++||+... .|+++.++ .+ + ..+.....+
T Consensus 382 ~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs-~Glvk~~pe~~~v~n~ln~~~~~ 460 (671)
T COG3292 382 LEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTS-GGLVKRDPESGRVLNLLNPGSHG 460 (671)
T ss_pred hhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEecc-CCeEecCccccchhcccccccCc
Confidence 4456889999998888888876443444433333333 1566789999998775 68999984 44 3 333322233
Q ss_pred ccccccccEEEcCCCCEEEEeCC
Q 026389 157 SRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 157 ~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
.+-.+..-+.++++|++|++..+
T Consensus 461 l~~s~~~~lg~~~~g~Lw~a~g~ 483 (671)
T COG3292 461 LDGSRVEQLGLGPDGRLWLAAGS 483 (671)
T ss_pred CCcchhhhhccCCCCceEEEecc
Confidence 33445678899999999998765
No 158
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.45 E-value=0.56 Score=43.55 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=59.0
Q ss_pred EEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCc----CccCeEEcCCCCEEEEeC--------------CCCeEEEc
Q 026389 82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGD----TLLGITTTQENEILVCDA--------------DKGLLKVT 143 (239)
Q Consensus 82 ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~----p~~Gl~~d~~G~L~v~d~--------------~~g~~~v~ 143 (239)
+...++|+++++.. +++.++|..|++.......+. =+ .+...++|++++... ...++.++
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 45557788887665 788888888875332222221 35 777889998666443 23577888
Q ss_pred cCC--ceEE--ecccC--------------------CccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCc
Q 026389 144 EEG--VTVL--ASHVN--------------------GSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (239)
Q Consensus 144 ~~g--~~~l--~~~~~--------------------g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g 198 (239)
++| +..+ .+.++ +..-.+.|++..++ ++.|++|.-. ..
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------~s 293 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------QS 293 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------T-
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------ce
Confidence 777 3322 11111 11224789999999 6788888644 24
Q ss_pred eEEEEeCCCCeEEEec
Q 026389 199 KLLKYDPSLNETSILL 214 (239)
Q Consensus 199 ~v~~~d~~~~~~~~~~ 214 (239)
.|+++|..++++.=++
T Consensus 294 ~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 294 AVIKIDYRTGKIKWIL 309 (477)
T ss_dssp EEEEEE-TTS-EEEEE
T ss_pred EEEEEECCCCcEEEEe
Confidence 6777776666665433
No 159
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.40 E-value=0.3 Score=46.34 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred CcceEEEcCCCCEEEEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC--ceEEeccc
Q 026389 78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHV 154 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g--~~~l~~~~ 154 (239)
--+|+++-+++.+..++.||.|.+|+.+|+. .........-+ .+....++.++|+-...+.+++...+ .+.+..
T Consensus 181 ~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~l-- 257 (745)
T KOG0301|consen 181 CVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKKDECVQVITL-- 257 (745)
T ss_pred heeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeecCceEEEEec--
Confidence 3567888888888888999999999988874 22222223344 55544567788887778888888555 333321
Q ss_pred CCccccccccEEEcCCCCEEEEeCC
Q 026389 155 NGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 155 ~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
|-....++.+-++|.|+++.+.
T Consensus 258 ---PttsiWsa~~L~NgDIvvg~SD 279 (745)
T KOG0301|consen 258 ---PTTSIWSAKVLLNGDIVVGGSD 279 (745)
T ss_pred ---CccceEEEEEeeCCCEEEeccC
Confidence 1123455666666666665543
No 160
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.38 E-value=0.37 Score=42.56 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=79.0
Q ss_pred eEEEcC-CCCEEEEeCCCeEEEEec-CCcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceEEeccc
Q 026389 81 DVCVDR-NGVLYTATRDGWIKRLHK-NGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHV 154 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~~~g~I~~~~~-~G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~l~~~~ 154 (239)
.+.+.+ |+.+|+++.|+.|..||. .|+.. +......... .++..+.-.++++.+...+-..+ +.| ..-+
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nl---- 356 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNL---- 356 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhcc----
Confidence 345555 789999999999999985 56532 2222222333 67777777788776655555555 566 2211
Q ss_pred CCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-----C-CCC---CcceEEE
Q 026389 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----D-SLF---FANGVAL 225 (239)
Q Consensus 155 ~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-----~-~l~---~pnGia~ 225 (239)
.|.. .-.|.+++..||. ||+.+. +|.++.+|-.+|.--... . .+. .....||
T Consensus 357 sgh~-~iintl~~nsD~v-~~~G~d-----------------ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f 417 (460)
T KOG0285|consen 357 SGHN-AIINTLSVNSDGV-LVSGGD-----------------NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF 417 (460)
T ss_pred cccc-ceeeeeeeccCce-EEEcCC-----------------ceEEEEEecCcCcccccccccccCCccccccceeEEee
Confidence 1211 1256777777764 444333 577888887665321111 1 111 2245678
Q ss_pred cCCCCEEEEEeCCC
Q 026389 226 SKDEDYLVVCETFK 239 (239)
Q Consensus 226 s~dg~~lyvadt~~ 239 (239)
+.-|..|..+|+.+
T Consensus 418 Dktg~rlit~eadK 431 (460)
T KOG0285|consen 418 DKTGSRLITGEADK 431 (460)
T ss_pred cccCceEEeccCCc
Confidence 88888888887653
No 161
>PRK13684 Ycf48-like protein; Provisional
Probab=95.38 E-value=1.1 Score=39.47 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=38.7
Q ss_pred EEEEeCCCeEEEEecCC-cEEEeee---ccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCc--eEEecccCCccccccc
Q 026389 90 LYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEGV--TVLASHVNGSRINLAD 163 (239)
Q Consensus 90 ly~~~~~g~I~~~~~~G-~~~~~~~---~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~--~~l~~~~~g~~~~~pn 163 (239)
.|+....|.|++-...| +|+.+.. ..+.++ ++....++.+|++....++++-.+.|. +.+..... ...+
T Consensus 102 ~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~----g~~~ 176 (334)
T PRK13684 102 GWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAA----GVVR 176 (334)
T ss_pred EEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCCc----ceEE
Confidence 44444455566543223 3443321 223455 554444455666654434444444442 22222222 2456
Q ss_pred cEEEcCCCCEEEEe
Q 026389 164 DLIAATDGSIYFSV 177 (239)
Q Consensus 164 ~l~vd~dG~iy~td 177 (239)
++.++++|.+++..
T Consensus 177 ~i~~~~~g~~v~~g 190 (334)
T PRK13684 177 NLRRSPDGKYVAVS 190 (334)
T ss_pred EEEECCCCeEEEEe
Confidence 77777777655544
No 162
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.32 E-value=0.5 Score=43.92 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=54.0
Q ss_pred EEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEe------------------CCCCeEEEc-cCCceE
Q 026389 90 LYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCD------------------ADKGLLKVT-EEGVTV 149 (239)
Q Consensus 90 ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d------------------~~~g~~~v~-~~g~~~ 149 (239)
+|++..+|+++.+|. +|+. .|..... -. +++.++ +.+|+.. ....++.+| .+|..+
T Consensus 304 V~~g~~~G~l~ald~~tG~~-~W~~~~~-~~-~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~ 379 (488)
T cd00216 304 IVHAPKNGFFYVLDRTTGKL-ISARPEV-EQ-PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV 379 (488)
T ss_pred EEEECCCceEEEEECCCCcE-eeEeEee-cc-ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence 778888999999996 5654 2322111 12 455554 6777742 123456677 566222
Q ss_pred EecccCCcc----cccc--ccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389 150 LASHVNGSR----INLA--DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (239)
Q Consensus 150 l~~~~~g~~----~~~p--n~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~ 211 (239)
........+ +..+ ..-.+..++.||+++. .|+|+.+|.++|++.
T Consensus 380 W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~------------------dG~l~ald~~tG~~l 429 (488)
T cd00216 380 WEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA------------------DGYFRAFDATTGKEL 429 (488)
T ss_pred eEeeCCccccccccCCcccCcceEecCCeEEEECC------------------CCeEEEEECCCCcee
Confidence 221111000 0011 1112233467888774 388999999888753
No 163
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.29 E-value=0.5 Score=46.34 Aligned_cols=128 Identities=16% Similarity=0.259 Sum_probs=78.4
Q ss_pred CEEEEe--CCCeEEEEec-CCcE-EEeeeccCcCccCeEEc------CCCCEEEEeCCCCeEEEcc--CCceEEecccCC
Q 026389 89 VLYTAT--RDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTT------QENEILVCDADKGLLKVTE--EGVTVLASHVNG 156 (239)
Q Consensus 89 ~ly~~~--~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d------~~G~L~v~d~~~g~~~v~~--~g~~~l~~~~~g 156 (239)
.++.-+ ....|+++|. .|++ +.|.-....|...++-+ .+...|++-..++++++|+ .|..++......
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444433 4578888885 4653 44532221111022221 1236788888899999993 452222111100
Q ss_pred -ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEE
Q 026389 157 -SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVV 234 (239)
Q Consensus 157 -~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyv 234 (239)
..-+-..-++.+.+|.|.++... |.|-.||.-+.+....+.++..| .||.++.||++|+.
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~------------------G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNK------------------GDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCC------------------CcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 11122356788889999888754 78888887766667777787776 89999999998764
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.26 E-value=0.56 Score=44.37 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=75.7
Q ss_pred EEEcCCCCEE-EEe-CCCeEEEEecCCcEEE--eeec--cCcCccCeEEcCCC-CEEEEe-CCCCeEEEcc-CC-ceEEe
Q 026389 82 VCVDRNGVLY-TAT-RDGWIKRLHKNGTWEN--WKLI--GGDTLLGITTTQEN-EILVCD-ADKGLLKVTE-EG-VTVLA 151 (239)
Q Consensus 82 ia~d~~G~ly-~~~-~~g~I~~~~~~G~~~~--~~~~--~~~p~~Gl~~d~~G-~L~v~d-~~~g~~~v~~-~g-~~~l~ 151 (239)
-+..|+|++. .+. .+=+|+|+++++.+.. .... ...+.+-+.+..|+ .++++. ....+..+.. .. .+.+.
T Consensus 388 ~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~ 467 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELK 467 (691)
T ss_pred eccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhh
Confidence 4667889876 333 7789999998774322 1111 11111134455455 333333 2233334442 22 22222
Q ss_pred cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC-CcceEEEc-CCC
Q 026389 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALS-KDE 229 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~-~pnGia~s-~dg 229 (239)
.......-...+-+++.++|+.+..-+. .|.|+.|+..+++.+.+...+. .-..++++ .+-
T Consensus 468 ~~~~~~~~~~I~~l~~SsdG~yiaa~~t-----------------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~ 530 (691)
T KOG2048|consen 468 SIQSQAKCPSISRLVVSSDGNYIAAIST-----------------RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVR 530 (691)
T ss_pred ccccccCCCcceeEEEcCCCCEEEEEec-----------------cceEEEEEcccceeecchhccCcceeeeecccccc
Confidence 2111122345678999999974433323 4889999999888877763333 23455666 345
Q ss_pred CEEEEEeCC
Q 026389 230 DYLVVCETF 238 (239)
Q Consensus 230 ~~lyvadt~ 238 (239)
+.|.|+.+.
T Consensus 531 ~~lvvats~ 539 (691)
T KOG2048|consen 531 NRLVVATSN 539 (691)
T ss_pred CcEEEEecC
Confidence 567776653
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.18 E-value=0.48 Score=43.03 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=80.8
Q ss_pred CcceEEEcCCCC-EEEEeCCCeEEEEecCCcEEEe---eeccCcCccCeEEcCCCC-EEEEeCCCCeEE-Ec-cCC-ceE
Q 026389 78 GPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWENW---KLIGGDTLLGITTTQENE-ILVCDADKGLLK-VT-EEG-VTV 149 (239)
Q Consensus 78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G~~~~~---~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~-v~-~~g-~~~ 149 (239)
+-.+|-|.|.-. +.++.-++.+..|..||++... ......|+.-.+|.++|. .+++...+..+. .| ..+ ++.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 345678887654 4477778776666667754221 223345653566778886 333333333333 34 444 443
Q ss_pred EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg 229 (239)
+. ...|.+-.+..-..|++++++...... +|.|+.....|++...-..--....+++|+.|+
T Consensus 295 ~~-~~~g~e~~~~e~FeVShd~~fia~~G~-----------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 295 LK-PPYGVEEKSMERFEVSHDSNFIAIAGN-----------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS 356 (514)
T ss_pred cc-CCCCcccchhheeEecCCCCeEEEccc-----------------CceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence 32 223333345567788999986655543 578888877766542221112345678888888
Q ss_pred CEEEEE
Q 026389 230 DYLVVC 235 (239)
Q Consensus 230 ~~lyva 235 (239)
+.||++
T Consensus 357 k~l~~~ 362 (514)
T KOG2055|consen 357 KELLAS 362 (514)
T ss_pred cEEEEE
Confidence 888776
No 166
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.13 E-value=1.5 Score=40.00 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=43.9
Q ss_pred Cc-ceEEEcCCCCEEEEeCCCeEEEEecC--CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 78 GP-EDVCVDRNGVLYTATRDGWIKRLHKN--GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 78 gP-e~ia~d~~G~ly~~~~~g~I~~~~~~--G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
.| -+|.|-.+..+-+++.++.|+.+..+ .-+.++....+... +|.+++.|.|+.+-++.+.+++.
T Consensus 319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~-alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN-ALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceE-EEEECCCCceEEEecCCCeeEee
Confidence 44 44666555566666688877665543 33455555566777 89999999988887777766664
No 167
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.11 E-value=2.4 Score=41.89 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=71.7
Q ss_pred ceEEEcC-CCCE-EEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEc-CCCCEEEEeCCCCeEEEc--cCC-c--eE
Q 026389 80 EDVCVDR-NGVL-YTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT--EEG-V--TV 149 (239)
Q Consensus 80 e~ia~d~-~G~l-y~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~v~--~~g-~--~~ 149 (239)
.+++|++ +|.+ .+++.|+.|..||.. ++. ..+ ....... .+.+. ++|.++++....|.+++. .++ . ..
T Consensus 579 ~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~-~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 579 WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANIC-CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred EEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE
Confidence 4678886 6664 466789999999863 432 222 2223344 56664 567777766666776665 233 1 12
Q ss_pred EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-------eEEEecCCCCCcce
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-------ETSILLDSLFFANG 222 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-------~~~~~~~~l~~pnG 222 (239)
+. +.. .....+.+. ++..+++-+. .+.|..||...+ .+..+...-...+.
T Consensus 657 ~~----~h~-~~V~~v~f~-~~~~lvs~s~-----------------D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 657 MI----GHS-KTVSYVRFV-DSSTLVSSST-----------------DNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred ec----CCC-CCEEEEEEe-CCCEEEEEEC-----------------CCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 21 110 123556664 5555555433 466777776422 22233222234567
Q ss_pred EEEcCCCCEEEEE
Q 026389 223 VALSKDEDYLVVC 235 (239)
Q Consensus 223 ia~s~dg~~lyva 235 (239)
+++++++++|...
T Consensus 714 v~~s~~~~~lasg 726 (793)
T PLN00181 714 VGLSVSDGYIATG 726 (793)
T ss_pred EEEcCCCCEEEEE
Confidence 8888888866544
No 168
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.05 E-value=1 Score=40.69 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=61.2
Q ss_pred cCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccce
Q 026389 117 DTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL 192 (239)
Q Consensus 117 ~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~ 192 (239)
.-. ++...+.|.-++..+..+.+.+. .+| ..+.... +... .....++.|||.|+.+-..
T Consensus 305 ~V~-~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~v-~~ts~~fHpDgLifgtgt~------------- 367 (506)
T KOG0289|consen 305 PVT-GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSDV-EYTSAAFHPDGLIFGTGTP------------- 367 (506)
T ss_pred cce-eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--cccc-eeEEeeEcCCceEEeccCC-------------
Confidence 345 88888999877777777888775 566 3333322 2111 2357899999999888654
Q ss_pred eecCCceEEEEeCCCCeEEEecCCCC-CcceEEEcCCCCEEEE
Q 026389 193 EAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVV 234 (239)
Q Consensus 193 e~~~~g~v~~~d~~~~~~~~~~~~l~-~pnGia~s~dg~~lyv 234 (239)
+|.|-.||.+++....-..+-. -...|+|+.+|-+|.+
T Consensus 368 ----d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat 406 (506)
T KOG0289|consen 368 ----DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT 406 (506)
T ss_pred ----CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE
Confidence 5777778876554211122222 2367889888866544
No 169
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.99 E-value=0.67 Score=39.35 Aligned_cols=131 Identities=9% Similarity=-0.004 Sum_probs=68.9
Q ss_pred CCccccccCCCCCCC-CCCCCC-ccc---ccceEeccCC-cCCcceEEEcCCCC-EEEEeCCCeEEEEecC-CcEEEeee
Q 026389 42 PISPDLLLLPPASSA-SLIPTT-SDI---QSVTRLGEGI-LNGPEDVCVDRNGV-LYTATRDGWIKRLHKN-GTWENWKL 113 (239)
Q Consensus 42 ~~~p~~~~~p~~~~~-g~~~~n-~~l---~~~~~l~~g~-~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-G~~~~~~~ 113 (239)
.++-+.|.++.++.+ .+.+-. -++ +..+.+..-. -.+---+.|.|+|. +.+++.+.+|.-+|.- -++..-.+
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~ 145 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ 145 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc
Confidence 566677888777665 222211 111 1111111100 01222367777654 4466788888777742 22211112
Q ss_pred ccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeC
Q 026389 114 IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVA 178 (239)
Q Consensus 114 ~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~ 178 (239)
.....+ -+.+..++++++...+.|.+.+- +.= +..+.. .+ ..+--|.++|+|+-+.+.+
T Consensus 146 ~~~e~n-e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A----H~-snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 146 FKFEVN-EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA----HP-SNCICIEFDPDGRYFATGS 208 (313)
T ss_pred ccceee-eeeecCCCCEEEEecCCceEEEEecccccccccccc----CC-cceEEEEECCCCceEeecc
Confidence 223445 67777778899998888888775 321 222211 11 2345688999998655543
No 170
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.90 E-value=0.79 Score=42.05 Aligned_cols=39 Identities=28% Similarity=0.228 Sum_probs=35.7
Q ss_pred ceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 198 g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
..|-.||.++++++....++.....+.+++||+++.+++
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred ceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc
Confidence 388899999999999999999999999999999888875
No 171
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.82 E-value=1.8 Score=38.32 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=69.8
Q ss_pred cceEEEcCCCCEE-EEeCCCeEEEEecC-CcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cC-C-ceEEe
Q 026389 79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EE-G-VTVLA 151 (239)
Q Consensus 79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~-g-~~~l~ 151 (239)
-..+.|+.+|.+. +++-+|+|..+..+ |..+ .+......-- =|.+.+.+.++.+-...|.+... ++ + .+++.
T Consensus 109 Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~die-Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 109 VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIE-WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceE-EEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 3457777788766 66788988877643 3221 2222333333 46667888888887777777665 45 4 45543
Q ss_pred cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~ 214 (239)
. .. ...+--.+-|||.-.++-.. +|.|..||+++++....+
T Consensus 188 G----h~-~~ct~G~f~pdGKr~~tgy~-----------------dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 188 G----HN-SPCTCGEFIPDGKRILTGYD-----------------DGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred C----CC-CCcccccccCCCceEEEEec-----------------CceEEEEecCCCceeEEe
Confidence 2 11 12455567788955555433 588999999998765544
No 172
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.80 E-value=1.1 Score=43.80 Aligned_cols=135 Identities=15% Similarity=0.199 Sum_probs=77.5
Q ss_pred cceEEEcCCCCEEE-EeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-c-eEEe
Q 026389 79 PEDVCVDRNGVLYT-ATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-V-TVLA 151 (239)
Q Consensus 79 Pe~ia~d~~G~ly~-~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~-~~l~ 151 (239)
-.+++++-+|...+ ++.|-.|..++. |+. ..++....+.-+ ++.++++|++++..+..|.+++. .++ . ..+.
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl-~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL-QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCcee-eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 35678888887664 445555555553 332 333333334445 99999999999888888988886 566 2 3332
Q ss_pred cccCCc--c-ccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCC--cceEE
Q 026389 152 SHVNGS--R-INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFF--ANGVA 224 (239)
Q Consensus 152 ~~~~g~--~-~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~--pnGia 224 (239)
...... . -+-.+-++..|+| .+.+--. .+.|-.|++++.+..- +.++... -+-++
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~------------------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPV------------------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeecc------------------CCeEEEEccCCceeheeecccccccceEEEE
Confidence 211110 0 1234567788884 5544332 2456677776655432 2233222 35577
Q ss_pred EcCCCCEE
Q 026389 225 LSKDEDYL 232 (239)
Q Consensus 225 ~s~dg~~l 232 (239)
|+|.|++|
T Consensus 240 wsPnG~Yi 247 (933)
T KOG1274|consen 240 WSPNGKYI 247 (933)
T ss_pred EcCCCcEE
Confidence 78887754
No 173
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.68 E-value=0.1 Score=31.42 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCEEEEeCCCC-eEEEc-cCC--ceEEecccCCccccccccEEEcC
Q 026389 128 NEILVCDADKG-LLKVT-EEG--VTVLASHVNGSRINLADDLIAAT 169 (239)
Q Consensus 128 G~L~v~d~~~g-~~~v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~ 169 (239)
|+||++|.... .+... .+| .+++... .+..|++|+||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~----~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD----DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES----STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC----CCCCcCEEEECC
Confidence 57999999888 66555 577 5555542 267899999985
No 174
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=94.67 E-value=0.92 Score=45.32 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=93.1
Q ss_pred eccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEeeec-cCcCccCeEEcCC-CCEEEEeCCC-C-eEEEc
Q 026389 71 LGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWKLI-GGDTLLGITTTQE-NEILVCDADK-G-LLKVT 143 (239)
Q Consensus 71 l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~~~-~~~p~~Gl~~d~~-G~L~v~d~~~-g-~~~v~ 143 (239)
...| .-.|+++++|- .+++|.++ ....|...+.+|.. .+.... ...|. .+++++. |.+|++|.+. . +.+..
T Consensus 475 ~~~g-~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra~ 552 (877)
T KOG1215|consen 475 CGDG-LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERAS 552 (877)
T ss_pred eccC-ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhhc
Confidence 3444 67899999997 77899877 56667666656642 222222 26788 8999954 5789999874 1 22223
Q ss_pred cCC--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-EecCCCCC
Q 026389 144 EEG--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFF 219 (239)
Q Consensus 144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~~~l~~ 219 (239)
.+| .+.+... .+..||++++|-. .++|+.|.... -.+.+.+.++++.+ .....+.+
T Consensus 553 ~dg~~~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~~----------------~~i~~~~~~g~~r~~~~~~~~~~ 612 (877)
T KOG1215|consen 553 LDGSERAVLVTN----GILWPNGLTIDYETDRLYWADAKLD----------------YTIESANMDGQNRRVVDSEDLPH 612 (877)
T ss_pred CCCCCceEEEeC----CccCCCcceEEeecceeEEEcccCC----------------cceeeeecCCCceEEeccccCCC
Confidence 566 4444332 1568999999975 59999997632 13555665544333 44466888
Q ss_pred cceEEEcCCCCEEEEEeC
Q 026389 220 ANGVALSKDEDYLVVCET 237 (239)
Q Consensus 220 pnGia~s~dg~~lyvadt 237 (239)
|.+++...+ ++|..+.
T Consensus 613 p~~~~~~~~--~iyw~d~ 628 (877)
T KOG1215|consen 613 PFGLSVFED--YIYWTDW 628 (877)
T ss_pred ceEEEEecc--eeEEeec
Confidence 999888643 5777664
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.65 E-value=0.51 Score=42.17 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=53.3
Q ss_pred EEEcCC--CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CCceEEec--cc
Q 026389 82 VCVDRN--GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EGVTVLAS--HV 154 (239)
Q Consensus 82 ia~d~~--G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g~~~l~~--~~ 154 (239)
|+|.|. ..|..+..|..|..|+. .|+..........-. .+.|+.||.++++......+++. + .| +++.+ ..
T Consensus 137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~h 214 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAH 214 (472)
T ss_pred EeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCC-cEeeecccc
Confidence 555552 22334456778888875 454322222334445 77888999999988777777775 3 34 22222 22
Q ss_pred CCccccccccEEEcCCCCEEEEeCC
Q 026389 155 NGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 155 ~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
+| ..+.-..+-.+|.|+-|..+
T Consensus 215 eG---~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 215 EG---AKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred cC---CCcceeEEeccCceeeeccc
Confidence 33 23555667778885555433
No 176
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=94.61 E-value=2 Score=34.78 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=59.2
Q ss_pred cceEEEcCCCCEE-EE--eCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeC-C--CCeEEEcc-CCceEEe
Q 026389 79 PEDVCVDRNGVLY-TA--TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDA-D--KGLLKVTE-EGVTVLA 151 (239)
Q Consensus 79 Pe~ia~d~~G~ly-~~--~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~-~--~g~~~v~~-~g~~~l~ 151 (239)
-.+++|+|+|.-+ +. ....+|..++.+++... .-.....+ .+.++|+|+.+++.. + .|.+.+.. +..+.+.
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~-~~~~~~~n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF-SFGTQPRN-TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeE-eecCCCce-EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence 5678999988644 32 34568888887655322 12234556 899999998666543 2 35576653 2333333
Q ss_pred cccCCccccccccEEEcCCCCEEEEeCC
Q 026389 152 SHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
... ......++.+|||+.++|..+
T Consensus 140 ~~~----~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 140 TFE----HSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred ccc----cCcEEEEEEcCCCCEEEEEEe
Confidence 221 123689999999988777654
No 177
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.60 E-value=1.1 Score=38.18 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=53.1
Q ss_pred EEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEccCC-ceEEecccCCccccccccE
Q 026389 90 LYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDL 165 (239)
Q Consensus 90 ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~~~g-~~~l~~~~~g~~~~~pn~l 165 (239)
+.++...|.++.++. .|+ ...|......-- --..|.++ .+|...++...+.+|..- .-+......|..+.. -
T Consensus 66 VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s---P 141 (354)
T KOG4649|consen 66 VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS---P 141 (354)
T ss_pred EEEEEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc---c
Confidence 445566667766653 342 222211111111 12345555 455566666777777322 233333444544433 3
Q ss_pred EEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 166 IAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 166 ~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
++++ +|.||++-.+ |+|++..++....
T Consensus 142 ~i~~g~~sly~a~t~------------------G~vlavt~~~~~~ 169 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITA------------------GAVLAVTKNPYSS 169 (354)
T ss_pred eecCCCceEEEEecc------------------ceEEEEccCCCCc
Confidence 7788 7899999765 7788877765533
No 178
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=94.56 E-value=0.24 Score=46.81 Aligned_cols=134 Identities=20% Similarity=0.238 Sum_probs=75.6
Q ss_pred cceEEEcC--CCCEEEEeCCCeEE--EEecCCcE------EEee-eccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--c
Q 026389 79 PEDVCVDR--NGVLYTATRDGWIK--RLHKNGTW------ENWK-LIGGDTLLGITTTQEN-EILVCDADKGLLKVT--E 144 (239)
Q Consensus 79 Pe~ia~d~--~G~ly~~~~~g~I~--~~~~~G~~------~~~~-~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~--~ 144 (239)
-.++.||| +.+|-++..+|+|. |+..+|-. +... ..+.... .|+|.+-- +++....+.-.+++. .
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehh
Confidence 34678887 45788888888764 44444411 1111 1112233 45555322 333333444455554 3
Q ss_pred CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-C--CC
Q 026389 145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-L--FF 219 (239)
Q Consensus 145 ~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l--~~ 219 (239)
++ ...+....+ ..-+++..+||+...|-.. .|+|.+|.|.+++..+.... . ..
T Consensus 709 ~~~~~~~l~gHtd-----qIf~~AWSpdGr~~AtVcK-----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTD-----QIFGIAWSPDGRRIATVCK-----------------DGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred hhhhhheeccCcC-----ceeEEEECCCCcceeeeec-----------------CceEEEeCCCCCCCccccCCCCccCc
Confidence 44 333333322 2568999999998888754 68999999987765444321 1 22
Q ss_pred cceEEEcCCCCEEEEE
Q 026389 220 ANGVALSKDEDYLVVC 235 (239)
Q Consensus 220 pnGia~s~dg~~lyva 235 (239)
..-|.|.=||++++|+
T Consensus 767 gARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVV 782 (1012)
T ss_pred ceeEEEEecCcEEEEe
Confidence 2336677788877765
No 179
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.55 E-value=2.9 Score=40.00 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=73.1
Q ss_pred CCcceEEEcCCCCE--EEEe-------CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-cC
Q 026389 77 NGPEDVCVDRNGVL--YTAT-------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EE 145 (239)
Q Consensus 77 ~gPe~ia~d~~G~l--y~~~-------~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~ 145 (239)
..+.+.+++++|.- |+.. ...+|+.++.+|+.+.+.. +..-. .-.++++| .||+......+.++. .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEeccC
Confidence 45667789998853 4431 2347777776554443322 22222 56788996 577664443444443 22
Q ss_pred C-ceEEecccCCcc-----ccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEE---EeCCCCeEEE---
Q 026389 146 G-VTVLASHVNGSR-----INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLK---YDPSLNETSI--- 212 (239)
Q Consensus 146 g-~~~l~~~~~g~~-----~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~---~d~~~~~~~~--- 212 (239)
+ -++.....++.. -..+..+.+.+|| +|.|.-. |+|+. ...++|+.+.
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeeccc
Confidence 2 222111111111 1247899999999 6766542 23333 2223344322
Q ss_pred --ecCCCCC-cceEEEcCCCCEEEEE
Q 026389 213 --LLDSLFF-ANGVALSKDEDYLVVC 235 (239)
Q Consensus 213 --~~~~l~~-pnGia~s~dg~~lyva 235 (239)
+..++.. +..+++..|++ |+|.
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~-L~V~ 513 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDS-LVVG 513 (591)
T ss_pred EEeecccCCccccceEecCCE-EEEE
Confidence 4455554 58889988887 5554
No 180
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.52 E-value=2.3 Score=36.31 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=79.0
Q ss_pred cceEeccCCcCCcc----eEEEcCC-CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEE--EeCCC-
Q 026389 67 SVTRLGEGILNGPE----DVCVDRN-GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILV--CDADK- 137 (239)
Q Consensus 67 ~~~~l~~g~~~gPe----~ia~d~~-G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v--~d~~~- 137 (239)
+.|+|++ ..|=. ++.+|.+ ..+.+++.|..+..||. .|+.....+...... .+.|+.+|++.+ +|...
T Consensus 41 nGerlGt--y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 41 NGERLGT--YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred CCceeee--ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcC
Confidence 3566654 33333 3455543 46778889998888884 676433233333344 788888887544 44322
Q ss_pred --CeEEEc--cC------CceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389 138 --GLLKVT--EE------GVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL 207 (239)
Q Consensus 138 --g~~~v~--~~------g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~ 207 (239)
+.+.+. ++ +.+.+.... .+-..++-...++-|...|+.. ..|.|-+||..+
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~skit~a~Wg~l~~~ii~Gh-----------------e~G~is~~da~~ 178 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDSKITSALWGPLGETIIAGH-----------------EDGSISIYDART 178 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEec--CCccceeeeeecccCCEEEEec-----------------CCCcEEEEEccc
Confidence 333332 11 111111000 0112345555566665555433 369999999987
Q ss_pred CeEEEec--CCCCCcceEEEcCCCCEEE
Q 026389 208 NETSILL--DSLFFANGVALSKDEDYLV 233 (239)
Q Consensus 208 ~~~~~~~--~~l~~pnGia~s~dg~~ly 233 (239)
|+..+-. ..-...|.|++++|..++.
T Consensus 179 g~~~v~s~~~h~~~Ind~q~s~d~T~Fi 206 (327)
T KOG0643|consen 179 GKELVDSDEEHSSKINDLQFSRDRTYFI 206 (327)
T ss_pred CceeeechhhhccccccccccCCcceEE
Confidence 7543322 1234679999999987543
No 181
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.47 E-value=2.7 Score=35.77 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=69.5
Q ss_pred CcceEEEcC-C-CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEccCCceEEecc
Q 026389 78 GPEDVCVDR-N-GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVTEEGVTVLASH 153 (239)
Q Consensus 78 gPe~ia~d~-~-G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~~~g~~~l~~~ 153 (239)
.-+.++|++ + ..+.+++.+..|.+||. .++-.......+.-. -+...++|+ +.+.+....+..+|....+++...
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~ 144 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE 144 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehh
Confidence 345688987 3 34556678888988884 444322222223333 466777775 444444444445552112222111
Q ss_pred cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-c--eEEEcCCCC
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-N--GVALSKDED 230 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-n--Gia~s~dg~ 230 (239)
+-..+.|.+...-++.++|-... .|.|-...-. +++.+.+--.+| | -|.|+|+|+
T Consensus 145 ---~~~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~Gr 202 (313)
T KOG1407|consen 145 ---QFKFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGR 202 (313)
T ss_pred ---cccceeeeeeecCCCCEEEEecC-----------------CceEEEEecc--ccccccccccCCcceEEEEECCCCc
Confidence 11234678888877888776543 3555443322 222222211222 3 366899999
Q ss_pred EEEE
Q 026389 231 YLVV 234 (239)
Q Consensus 231 ~lyv 234 (239)
++-+
T Consensus 203 yfA~ 206 (313)
T KOG1407|consen 203 YFAT 206 (313)
T ss_pred eEee
Confidence 7643
No 182
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.34 E-value=1.5 Score=39.74 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=58.0
Q ss_pred ceEEEcCCCCEEEEeCCCeEEEEecCCcE-E--Eeeecc----C-cCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEE
Q 026389 80 EDVCVDRNGVLYTATRDGWIKRLHKNGTW-E--NWKLIG----G-DTLLGITTTQENEILVCDADKGLLKVT-EEGVTVL 150 (239)
Q Consensus 80 e~ia~d~~G~ly~~~~~g~I~~~~~~G~~-~--~~~~~~----~-~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l 150 (239)
.++++.++|.+|+....|.+++-+.+|+. + .|.... + ..+ ++.+..++.+|++-. .|++... +.|...-
T Consensus 284 ~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~-~v~~~~d~~~~a~G~-~G~v~~s~D~G~tW~ 361 (398)
T PLN00033 284 QNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGIL-DVGYRSKKEAWAAGG-SGILLRSTDGGKSWK 361 (398)
T ss_pred eeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceE-EEEEcCCCcEEEEEC-CCcEEEeCCCCccee
Confidence 36778888999988888888887666642 1 333221 1 234 677878888888865 4666665 4443321
Q ss_pred ecc-cCCccccccccEEEcCCCCEEEEeCC
Q 026389 151 ASH-VNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 151 ~~~-~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
... ..+.+ .....+.+..+++.|++-..
T Consensus 362 ~~~~~~~~~-~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 362 RDKGADNIA-ANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred EccccCCCC-cceeEEEEcCCCceEEEeCC
Confidence 111 11111 12347777777888887643
No 183
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=94.31 E-value=1.2 Score=41.04 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=64.7
Q ss_pred CcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCe---EEEccCC-ceEEecc
Q 026389 78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGL---LKVTEEG-VTVLASH 153 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~---~~v~~~g-~~~l~~~ 153 (239)
--++..|+|.|.+.++...|+.+.+|.+.+...-....+.|++-+++.++|..+...+..+. ++++.+| .-..+..
T Consensus 409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred ceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 44667888888777888888888888655433333444777757888999976555444443 3445677 2222333
Q ss_pred cCCccccccccEEEcCCCCEEEEeCC
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
..| .+...++.++|++...+.+.
T Consensus 489 ~~g---s~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 489 CSG---SPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred ecC---ceeEEeeecCCCceEEeccC
Confidence 344 44677889999988888765
No 184
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.24 E-value=0.43 Score=41.49 Aligned_cols=136 Identities=14% Similarity=0.246 Sum_probs=79.5
Q ss_pred ceEEEcCCCCEE-EEeCCCeEEEEecCCc-----EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CCceEEec
Q 026389 80 EDVCVDRNGVLY-TATRDGWIKRLHKNGT-----WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EGVTVLAS 152 (239)
Q Consensus 80 e~ia~d~~G~ly-~~~~~g~I~~~~~~G~-----~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g~~~l~~ 152 (239)
..+.|.|...|. .++.|+.|..+|..-. .+++.+ ..|.+.|.|.+.|..+.......++++.. +-.+-++.
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 356677755555 5558888888874221 122221 23333888999997655555555666553 22233332
Q ss_pred c-cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-EEe--cCCCCCcceEEEcCC
Q 026389 153 H-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SIL--LDSLFFANGVALSKD 228 (239)
Q Consensus 153 ~-~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~~~--~~~l~~pnGia~s~d 228 (239)
. .+.+--...+.+...+.|++|+|.+. .|.|-.||.-+++- +.+ +.+........|+.+
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN 316 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence 1 12222235788899999999999876 57787787654432 111 123334456778888
Q ss_pred CCEEEE
Q 026389 229 EDYLVV 234 (239)
Q Consensus 229 g~~lyv 234 (239)
|++++-
T Consensus 317 ~kyiLs 322 (430)
T KOG0640|consen 317 GKYILS 322 (430)
T ss_pred CeEEee
Confidence 886653
No 185
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=94.19 E-value=0.31 Score=44.37 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=89.6
Q ss_pred cCCcCCcceEEEcC-CCCEEEE-eCCCeEEEEec--CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cC
Q 026389 73 EGILNGPEDVCVDR-NGVLYTA-TRDGWIKRLHK--NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EE 145 (239)
Q Consensus 73 ~g~~~gPe~ia~d~-~G~ly~~-~~~g~I~~~~~--~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~ 145 (239)
.|--.+-..+-|-+ .|.|+.+ ..|++|+.|+. +++ +++|... ..|...+++..+|.=+.+-++.+.+++. +.
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 33334445556666 7887754 48899988874 444 3444322 2333378888999777777777777775 57
Q ss_pred C-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCCcce
Q 026389 146 G-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANG 222 (239)
Q Consensus 146 g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~pnG 222 (239)
| ...-.. .+ .-|+-+.+.||+ +++++..+ +++|..||..++++.. .-..+..-+.
T Consensus 290 G~~~~~f~--~~---~~~~cvkf~pd~~n~fl~G~s-----------------d~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 290 GQVLSRFH--LD---KVPTCVKFHPDNQNIFLVGGS-----------------DKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred ceEEEEEe--cC---CCceeeecCCCCCcEEEEecC-----------------CCcEEEEeccchHHHHHHHhhhhheee
Confidence 7 322221 12 247788899998 88888776 6899999998887422 2245666777
Q ss_pred EEEcCCCCEE
Q 026389 223 VALSKDEDYL 232 (239)
Q Consensus 223 ia~s~dg~~l 232 (239)
|.|-++|+.+
T Consensus 348 i~F~~~g~rF 357 (503)
T KOG0282|consen 348 ITFVDEGRRF 357 (503)
T ss_pred eEEccCCceE
Confidence 8887777754
No 186
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.17 E-value=1.3 Score=42.47 Aligned_cols=128 Identities=12% Similarity=0.098 Sum_probs=78.8
Q ss_pred EEEcCCCCEEEEeCCCeEEEEec-CCcEE-Eee-ec-cCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecc
Q 026389 82 VCVDRNGVLYTATRDGWIKRLHK-NGTWE-NWK-LI-GGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASH 153 (239)
Q Consensus 82 ia~d~~G~ly~~~~~g~I~~~~~-~G~~~-~~~-~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~ 153 (239)
++|+++|....+.-..+|..+|. +|+.. ... .. ...-. .+++++|++.+++-...+++++. +.| ++.+...
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~it-a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEIT-ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhh-eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence 99999997665554557777763 45542 111 11 12233 78888998766666666777776 556 3333221
Q ss_pred cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC-cceEEEcCCCCE
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF-ANGVALSKDEDY 231 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~-pnGia~s~dg~~ 231 (239)
-++ | .-.+++++.|.+.-+-.. .|++-.+|.+.+..+.-..|+.. ...+.|.|+-.+
T Consensus 104 He~-P---vi~ma~~~~g~LlAtgga-----------------D~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 104 HEA-P---VITMAFDPTGTLLATGGA-----------------DGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred cCC-C---eEEEEEcCCCceEEeccc-----------------cceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch
Confidence 122 2 246889998866555433 58888899887887777776443 355666666543
No 187
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.04 E-value=0.65 Score=42.24 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=78.9
Q ss_pred cceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-c-CC-ceEEec
Q 026389 79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-E-EG-VTVLAS 152 (239)
Q Consensus 79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~-~g-~~~l~~ 152 (239)
-|-+.+.+++.+. +....|.|+.+.. ++++..-....|..- ++.|+.+|+ ||++..+..++..+ . .. ...+.+
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 3456777777755 3347888888864 455433334456666 889998885 55555444444444 2 22 333322
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe----EE--EecCCCC-CcceEEE
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TS--ILLDSLF-FANGVAL 225 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~----~~--~~~~~l~-~pnGia~ 225 (239)
+|. .+-..++.+.+|. |++..+ ..|-|-.||.++-. .+ .-++++. ..+.|+|
T Consensus 385 --~G~--v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F 443 (514)
T KOG2055|consen 385 --DGS--VHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF 443 (514)
T ss_pred --cCc--cceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence 221 2345678888898 554433 25778888854321 11 1123332 3478999
Q ss_pred cCCCCEEEEEeC
Q 026389 226 SKDEDYLVVCET 237 (239)
Q Consensus 226 s~dg~~lyvadt 237 (239)
++|.+.|-++.+
T Consensus 444 n~d~qiLAiaS~ 455 (514)
T KOG2055|consen 444 NHDAQILAIASR 455 (514)
T ss_pred Ccchhhhhhhhh
Confidence 999987765543
No 188
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.00 E-value=1.6 Score=36.62 Aligned_cols=115 Identities=11% Similarity=0.127 Sum_probs=73.4
Q ss_pred eCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC----ceEEecccCCccccccccE
Q 026389 94 TRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG----VTVLASHVNGSRINLADDL 165 (239)
Q Consensus 94 ~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g----~~~l~~~~~g~~~~~pn~l 165 (239)
..|..|..||. .|++ +.|....+..+ .++|+.+-.++++.+....+++. ... ++++.+..++ ...
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-----V~S- 150 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-----VSS- 150 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc-----eeE-
Confidence 36777888885 5664 56666677788 89998777788777666666654 332 3333332222 122
Q ss_pred EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEEE
Q 026389 166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVC 235 (239)
Q Consensus 166 ~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyva 235 (239)
|+-.+..+++.+ -.|++-.||...|+. ..+.+..| |.+.|++|++.+++.
T Consensus 151 -i~v~~heIvaGS-----------------~DGtvRtydiR~G~l--~sDy~g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 151 -IDVAEHEIVAGS-----------------VDGTVRTYDIRKGTL--SSDYFGHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred -EEecccEEEeec-----------------cCCcEEEEEeeccee--ehhhcCCcceeEEecCCCCEEEEe
Confidence 222333444433 369999999876653 34556666 889999999987765
No 189
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=93.98 E-value=0.72 Score=41.14 Aligned_cols=122 Identities=11% Similarity=0.018 Sum_probs=76.2
Q ss_pred CCEEEEeCCCeEEEEecCCcE---EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCcccc
Q 026389 88 GVLYTATRDGWIKRLHKNGTW---ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRIN 160 (239)
Q Consensus 88 G~ly~~~~~g~I~~~~~~G~~---~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~ 160 (239)
.++..++.|..++.|++.... +.......--+ -+.|.|||+.+++.+...-+++. .+| ...+.... .
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv-----~ 410 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV-----A 410 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc-----c
Confidence 356677788999999874322 11112223456 78899999888777766677765 456 44443222 2
Q ss_pred ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCCCCEE
Q 026389 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYL 232 (239)
Q Consensus 161 ~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~dg~~l 232 (239)
...-++...|-++.++.+. .-.|-.|+-.++++..=+.+ --...++-++|||+.+
T Consensus 411 ~VYqvawsaDsRLlVS~Sk-----------------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSK-----------------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred eeEEEEeccCccEEEEcCC-----------------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 3567888889999998776 23455566655554332221 2234678889999854
No 190
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.98 E-value=3.4 Score=34.95 Aligned_cols=139 Identities=15% Similarity=0.085 Sum_probs=76.6
Q ss_pred CcceEEEcCCCCEE--EE--eCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc---cCC-c-e
Q 026389 78 GPEDVCVDRNGVLY--TA--TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT---EEG-V-T 148 (239)
Q Consensus 78 gPe~ia~d~~G~ly--~~--~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~---~~g-~-~ 148 (239)
.++..++.++|..+ +. ....+++....++....+. .+.... .-.+|++|.+|+.+......++. .+| . .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 56777999988755 33 2345677776666554433 223333 67789999999998765554433 344 2 2
Q ss_pred EEecccCCccccccccEEEcCCC-CEE-EEeCCCCcCcccccccceeecCCceEEEE----eCCC------CeEEEecCC
Q 026389 149 VLASHVNGSRINLADDLIAATDG-SIY-FSVASTKFGLHNWGLDLLEAKPHGKLLKY----DPSL------NETSILLDS 216 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~dG-~iy-~td~~~~~~~~~~~~~~~e~~~~g~v~~~----d~~~------~~~~~~~~~ 216 (239)
+-.+...... ....+.+++|| ++- +.... ..++|+.- |.++ ...++....
T Consensus 103 ~~v~~~~~~~--~I~~l~vSpDG~RvA~v~~~~----------------~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 103 VEVDWPGLRG--RITALRVSPDGTRVAVVVEDG----------------GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred EEecccccCC--ceEEEEECCCCcEEEEEEecC----------------CCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 2222111110 46789999999 554 33221 12444432 1111 111222223
Q ss_pred CCCcceEEEcCCCCEEEEEe
Q 026389 217 LFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 217 l~~pnGia~s~dg~~lyvad 236 (239)
+..+..+++.++++.++.+.
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred cCcceeeeecCCCEEEEEeC
Confidence 45667899998887655544
No 191
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.94 E-value=0.15 Score=35.84 Aligned_cols=48 Identities=10% Similarity=-0.092 Sum_probs=36.1
Q ss_pred eCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc
Q 026389 94 TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT 143 (239)
Q Consensus 94 ~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~ 143 (239)
...+.|+.+++ ++.+..+.....|+ ||.+++++ .|||++...+.+.+.
T Consensus 33 ~~~~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy 81 (86)
T PF01731_consen 33 LPWGNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVY 81 (86)
T ss_pred CCCceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEE
Confidence 34577888875 34566666678999 99999887 599999887666553
No 192
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.79 E-value=1.6 Score=39.77 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=81.0
Q ss_pred cCCcce-EEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc--------
Q 026389 76 LNGPED-VCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-------- 144 (239)
Q Consensus 76 ~~gPe~-ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-------- 144 (239)
+.||-. ++-+++|.+.++. ..|.||.|.- .|..-.+....-.+.+-|.|..||.++++.+..|.+.+..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 345543 5666789888777 8999999974 5653222122233433788888999999988877765531
Q ss_pred -CC-ceEEecccCCccccccccEEEcCCC---CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC
Q 026389 145 -EG-VTVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF 219 (239)
Q Consensus 145 -~g-~~~l~~~~~g~~~~~pn~l~vd~dG---~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~ 219 (239)
++ .+.+- .+.+.. ....|+.++..| ++|-+.. ...+-.||..++.+-.-+.--..
T Consensus 160 ~~~~~~p~~-~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~------------------D~t~k~wdlS~g~LLlti~fp~s 219 (476)
T KOG0646|consen 160 NDHSVKPLH-IFSDHT-LSITDLQIGSGGTNARLYTASE------------------DRTIKLWDLSLGVLLLTITFPSS 219 (476)
T ss_pred cCCCcccee-eeccCc-ceeEEEEecCCCccceEEEecC------------------CceEEEEEeccceeeEEEecCCc
Confidence 11 11111 111211 134566666654 3332221 23455577766654332222345
Q ss_pred cceEEEcCCCCEEEEE
Q 026389 220 ANGVALSKDEDYLVVC 235 (239)
Q Consensus 220 pnGia~s~dg~~lyva 235 (239)
++.++++|-++.+|+-
T Consensus 220 i~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIG 235 (476)
T ss_pred ceeEEEcccccEEEec
Confidence 6889999999998874
No 193
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.73 E-value=4.2 Score=35.23 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=50.9
Q ss_pred EEcCCCC-EEEEe-----CCCeEEEEecCCcEE---EeeeccCcCccCeEEcCCCCEEEE-eCC------CCeEEEccCC
Q 026389 83 CVDRNGV-LYTAT-----RDGWIKRLHKNGTWE---NWKLIGGDTLLGITTTQENEILVC-DAD------KGLLKVTEEG 146 (239)
Q Consensus 83 a~d~~G~-ly~~~-----~~g~I~~~~~~G~~~---~~~~~~~~p~~Gl~~d~~G~L~v~-d~~------~g~~~v~~~g 146 (239)
.+++||. ||.+- ..|.|-.||.+.... .|...+-.|+ -+.+..||+++|. +.+ .|..+++-+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH-ev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH-EVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc-eeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 4566775 44332 336666666543222 2233445688 8888899986654 331 1222222111
Q ss_pred ---ceEEecccCC-----------ccccccccEEEcCCCCEEEEeCC
Q 026389 147 ---VTVLASHVNG-----------SRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 147 ---~~~l~~~~~g-----------~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
.-++.+...| .......-+++++||+|||....
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 1111111111 23345678999999999998654
No 194
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=93.67 E-value=0.61 Score=42.91 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=57.9
Q ss_pred EeCCCeEEEEecCCcE--EEeeeccCcCccCeEEcCCC-CEEEEeCCC-CeEEEc-cC-C-ceEEecccCCccccccccE
Q 026389 93 ATRDGWIKRLHKNGTW--ENWKLIGGDTLLGITTTQEN-EILVCDADK-GLLKVT-EE-G-VTVLASHVNGSRINLADDL 165 (239)
Q Consensus 93 ~~~~g~I~~~~~~G~~--~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~-g~~~v~-~~-g-~~~l~~~~~g~~~~~pn~l 165 (239)
.+.+|.|..||.+|.. ..|......|..|+.|.+.+ .|+|+-.+. .++.+| .. . ...|. ...|+ ..+
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Pl---stv 256 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPL---STV 256 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCc---cee
Confidence 3466777777776642 23333344555599999877 466665443 444455 22 2 33332 12333 578
Q ss_pred EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389 166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN 208 (239)
Q Consensus 166 ~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~ 208 (239)
++.++|.+.+...+ .|+|+.||..+.
T Consensus 257 af~~~G~~L~aG~s-----------------~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 257 AFSECGTYLCAGNS-----------------KGELIAYDMRST 282 (673)
T ss_pred eecCCceEEEeecC-----------------CceEEEEecccC
Confidence 99999988777665 699999998754
No 195
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=93.67 E-value=1.3 Score=44.33 Aligned_cols=136 Identities=19% Similarity=0.265 Sum_probs=91.7
Q ss_pred eEEEcC-CCCEEEEe-CCCeEEEEecCCcEEE--eeeccCcCccCeEEcCC-CCEEEEeCCCCeEEEc-cCC--ceEEec
Q 026389 81 DVCVDR-NGVLYTAT-RDGWIKRLHKNGTWEN--WKLIGGDTLLGITTTQE-NEILVCDADKGLLKVT-EEG--VTVLAS 152 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~--~~~~~~~p~~Gl~~d~~-G~L~v~d~~~g~~~v~-~~g--~~~l~~ 152 (239)
.+.++. ++.+|..+ .+.+|.+...++.... .......+- |+++|.- +++|.+|.....+.+. .+| ..+++.
T Consensus 441 ~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~ 519 (877)
T KOG1215|consen 441 ALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVS 519 (877)
T ss_pred EEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeEEEe
Confidence 344442 55788666 7788888876665332 233445677 9999944 4899999988777776 466 344543
Q ss_pred ccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCC
Q 026389 153 HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDED 230 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~ 230 (239)
.. +..|..+++++. |.+|++|... . . ++.|-..++...+.+. .++..|||++++-..+
T Consensus 520 ~~----l~~~r~~~v~p~~g~~~wtd~~~-~--------------~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~ 579 (877)
T KOG1215|consen 520 KD----LDLPRSIAVDPEKGLMFWTDWGQ-P--------------P-RIERASLDGSERAVLVTNGILWPNGLTIDYETD 579 (877)
T ss_pred cC----CCCccceeeccccCeeEEecCCC-C--------------c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecc
Confidence 21 134778999996 7999999762 1 1 4555555544444444 4478999999998888
Q ss_pred EEEEEeC
Q 026389 231 YLVVCET 237 (239)
Q Consensus 231 ~lyvadt 237 (239)
.+|.+|.
T Consensus 580 ~~yw~d~ 586 (877)
T KOG1215|consen 580 RLYWADA 586 (877)
T ss_pred eeEEEcc
Confidence 8998875
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=93.60 E-value=0.61 Score=41.31 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=47.1
Q ss_pred ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCCEEEEE
Q 026389 159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 159 ~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~~lyva 235 (239)
.+..+.+...+||.++++.+. +...+..+|++++.-..+. .++..-.-+-+||||+.++.+
T Consensus 195 h~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred CceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 456778889999999998764 2457889999988776665 555555668899999988765
No 197
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=2.8 Score=36.26 Aligned_cols=126 Identities=20% Similarity=0.192 Sum_probs=70.3
Q ss_pred cCCCCEEEEe--CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCC--EEEEeCCCCe--EEEccCC--ceEEecccCC
Q 026389 85 DRNGVLYTAT--RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDADKGL--LKVTEEG--VTVLASHVNG 156 (239)
Q Consensus 85 d~~G~ly~~~--~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~--L~v~d~~~g~--~~v~~~g--~~~l~~~~~g 156 (239)
+.||..++.. .+|+|.. -.....|-+ ||++++.-. +.++-. -|. +.+|.++ .-++....++
T Consensus 44 ~~dgs~g~a~~~eaGk~v~---------~~~lpaR~H-gi~~~p~~~ravafARr-PGtf~~vfD~~~~~~pv~~~s~~~ 112 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVF---------ATALPARGH-GIAFHPALPRAVAFARR-PGTFAMVFDPNGAQEPVTLVSQEG 112 (366)
T ss_pred ccCCceeEEEEccCCceee---------eeecccccC-CeecCCCCcceEEEEec-CCceEEEECCCCCcCcEEEecccC
Confidence 3577777543 4454432 122345667 888876543 333332 233 3445555 2222222233
Q ss_pred ccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe---cCCCCCcceEEEcCCCCEE
Q 026389 157 SRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKDEDYL 232 (239)
Q Consensus 157 ~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~---~~~l~~pnGia~s~dg~~l 232 (239)
. . |----++.+|| .+|.|+.. + ..+.|-|=.||.+.+ ...+ -+---.|..|.+.+||+++
T Consensus 113 R-H-fyGHGvfs~dG~~LYATEnd--f-----------d~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtl 176 (366)
T COG3490 113 R-H-FYGHGVFSPDGRLLYATEND--F-----------DPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTL 176 (366)
T ss_pred c-e-eecccccCCCCcEEEeecCC--C-----------CCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEE
Confidence 2 1 22234788999 57888765 2 123477778887633 3222 2334568999999999999
Q ss_pred EEEeC
Q 026389 233 VVCET 237 (239)
Q Consensus 233 yvadt 237 (239)
.|++-
T Consensus 177 vvanG 181 (366)
T COG3490 177 VVANG 181 (366)
T ss_pred EEeCC
Confidence 99875
No 198
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.22 E-value=5.5 Score=36.52 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=76.3
Q ss_pred cceEEEcC-CCCEE-EEeCCCeEEEEec--CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CCceEEec
Q 026389 79 PEDVCVDR-NGVLY-TATRDGWIKRLHK--NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EGVTVLAS 152 (239)
Q Consensus 79 Pe~ia~d~-~G~ly-~~~~~g~I~~~~~--~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g~~~l~~ 152 (239)
-.+.++.+ ++++. +|+-||+|..||. .+.+ ...-..+.|.-.+.+-+.|.++++-.+ ..+++. - .|.+.+..
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-VVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS 233 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCce-eEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh
Confidence 34456666 55565 6679999999985 2222 223334555525556688888877654 556654 3 35333322
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc---eEEEcCCC
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN---GVALSKDE 229 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn---Gia~s~dg 229 (239)
.... ..-..-+.+..+++-.+|.+- .++|-.||..+-++ ..++.+|+ .|+++||+
T Consensus 234 ~~~H--~KtVTcL~l~s~~~rLlS~sL-----------------D~~VKVfd~t~~Kv---v~s~~~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 234 MFNH--NKTVTCLRLASDSTRLLSGSL-----------------DRHVKVFDTTNYKV---VHSWKYPGPVLSIAVSPDD 291 (487)
T ss_pred hhcc--cceEEEEEeecCCceEeeccc-----------------ccceEEEEccceEE---EEeeecccceeeEEecCCC
Confidence 1111 123456777777754444433 46777788543332 23345554 47899999
Q ss_pred CEEEEE
Q 026389 230 DYLVVC 235 (239)
Q Consensus 230 ~~lyva 235 (239)
+++++-
T Consensus 292 ~t~viG 297 (487)
T KOG0310|consen 292 QTVVIG 297 (487)
T ss_pred ceEEEe
Confidence 988864
No 199
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=93.21 E-value=4.9 Score=34.41 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=61.5
Q ss_pred cCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeec---cCcCccCeEEcCCCCEEEEeCCCCeEE---EccCC-
Q 026389 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLI---GGDTLLGITTTQENEILVCDADKGLLK---VTEEG- 146 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~---~~~p~~Gl~~d~~G~L~v~d~~~g~~~---v~~~g- 146 (239)
-..-+++||.|.|++. +++.|..+..+.. +++++..... ...-- .+++.++|+++.+=+...-+. +++++
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 3566789999999855 5568888888765 5666544333 23455 789999998776544444333 34444
Q ss_pred ce---EEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 147 VT---VLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 147 ~~---~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
.+ +|.....+ .-.+...|--.|.|+-+.
T Consensus 140 fec~aVL~~HtqD-----VK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 140 FECIAVLQEHTQD-----VKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred EEEEeeecccccc-----ccEEEEcCCcceeEEecc
Confidence 33 33333222 345777887778888664
No 200
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.10 E-value=1 Score=42.22 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=57.7
Q ss_pred eEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeecc--CcCccCeEEcCCCCEEEEeCCCCeEEEccCCceEEecccCCc
Q 026389 81 DVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIG--GDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGS 157 (239)
Q Consensus 81 ~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~--~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~~~l~~~~~g~ 157 (239)
-+.+|.+|++|+++.+| +++|+. .|+.-...... ...+ .+..|.+|+|||... .|++..++.|-+.. .....-
T Consensus 169 aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGTd-qGv~~~e~~G~~~s-n~~~~l 244 (671)
T COG3292 169 ALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGTD-QGVYLQEAEGWRAS-NWGPML 244 (671)
T ss_pred eeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEec-cceEEEchhhcccc-ccCCCC
Confidence 36788889999988664 566664 34443222211 2345 677788999999875 67877775551111 011111
Q ss_pred cccccccEEEcCCCCEEEEeCC
Q 026389 158 RINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 158 ~~~~pn~l~vd~dG~iy~td~~ 179 (239)
+....+-+.-|.+|.+||....
T Consensus 245 p~~~I~ll~qD~qG~lWiGTen 266 (671)
T COG3292 245 PSGNILLLVQDAQGELWIGTEN 266 (671)
T ss_pred cchheeeeecccCCCEEEeecc
Confidence 2234556677888999998754
No 201
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.10 E-value=3.9 Score=36.18 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=62.5
Q ss_pred CCCEEEEeCCCeEEEEecCCcEEEeee-----------ccCcCccC---eEEc-CCCCEEEEeCCC----------CeEE
Q 026389 87 NGVLYTATRDGWIKRLHKNGTWENWKL-----------IGGDTLLG---ITTT-QENEILVCDADK----------GLLK 141 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~~G~~~~~~~-----------~~~~p~~G---l~~d-~~G~L~v~d~~~----------g~~~ 141 (239)
++++|+.+-+|+|+..+..|....+.. .+=+|- | ++++ +.|+|||.-+.. -++.
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG-G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG-GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc-ceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 457888888999999886553222111 011232 3 6776 466899875321 1333
Q ss_pred Ec-cCC--ceEEecccCCccccccccEEEcCCC--CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389 142 VT-EEG--VTVLASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS 216 (239)
Q Consensus 142 v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~ 216 (239)
+| ..+ +..+. .+ ...+.|.|..|. .||..+.. ++.|+.||..+|+....++.
T Consensus 274 ~D~~t~krv~Ri~--l~----~~~~Si~Vsqd~~P~L~~~~~~-----------------~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 274 YDLKTHKRVARIP--LE----HPIDSIAVSQDDKPLLYALSAG-----------------DGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEEE--EE----EEESEEEEESSSS-EEEEEETT-----------------TTEEEEEETTT--EEEEE--
T ss_pred EECCCCeEEEEEe--CC----CccceEEEccCCCcEEEEEcCC-----------------CCeEEEEeCcCCcEEeehhc
Confidence 44 233 11111 01 124578888876 46655543 57899999999988777777
Q ss_pred CCCcceEEEc
Q 026389 217 LFFANGVALS 226 (239)
Q Consensus 217 l~~pnGia~s 226 (239)
+....-|-++
T Consensus 331 lG~~~~l~~~ 340 (342)
T PF06433_consen 331 LGETPTLILT 340 (342)
T ss_dssp -SSS--EEEE
T ss_pred cCCCceEEEe
Confidence 7665545443
No 202
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.48 E-value=4.4 Score=34.10 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=59.3
Q ss_pred CEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c-cCCceEEecccCCc-ccccccc
Q 026389 89 VLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEGVTVLASHVNGS-RINLADD 164 (239)
Q Consensus 89 ~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~~g~~~l~~~~~g~-~~~~pn~ 164 (239)
.|..++.||++..||. .|+.. .+..+.|...+.+.++|+-..+..-.+.+++ | ..| ++|. .+.|. ...+--+
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~-sYkGhkn~eykld 232 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLK-SYKGHKNMEYKLD 232 (307)
T ss_pred EEEeeccCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHH-Hhcccccceeeee
Confidence 4567778888888874 55432 3445677657889999986666655666665 4 355 1111 12221 2233345
Q ss_pred EEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389 165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN 208 (239)
Q Consensus 165 l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~ 208 (239)
..+.......|+.+- .|.||.||.-..
T Consensus 233 c~l~qsdthV~sgSE-----------------DG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSE-----------------DGKVYFWDLVDE 259 (307)
T ss_pred eeecccceeEEeccC-----------------CceEEEEEeccc
Confidence 666655555565443 688999987544
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=92.38 E-value=7.7 Score=34.59 Aligned_cols=92 Identities=10% Similarity=0.129 Sum_probs=56.3
Q ss_pred ceEEEcCCCCEEEEe--CCCeEEEEecCCc-EEEee--eccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC----ceE
Q 026389 80 EDVCVDRNGVLYTAT--RDGWIKRLHKNGT-WENWK--LIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG----VTV 149 (239)
Q Consensus 80 e~ia~d~~G~ly~~~--~~g~I~~~~~~G~-~~~~~--~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g----~~~ 149 (239)
.++.|.+||..+++. .+..|..||++.+ -..+. ..++.. -+.+.+||..+.|..-.+.+++. .+. .+.
T Consensus 199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s--lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw 276 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS--LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW 276 (445)
T ss_pred eEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee--eEEEcCCCCEEEEecccceeeeehhcccceecce
Confidence 457788888877544 5677888887643 22222 122222 36788999877777777888876 433 122
Q ss_pred EecccCCccccccccEEEcCCC-CEEEEeCC
Q 026389 150 LASHVNGSRINLADDLIAATDG-SIYFSVAS 179 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~ 179 (239)
... .| +.-....+|+| .|.|+-+.
T Consensus 277 ~lg--sg----rvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 277 ILG--SG----RVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ecc--CC----ceeeeeecCCCCEEEEEEcC
Confidence 211 12 45677889999 56666544
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=2.2 Score=38.26 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=69.6
Q ss_pred ceEEEcCCCCEE-EEeCCCeEEEEe-cCCcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEec
Q 026389 80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLAS 152 (239)
Q Consensus 80 e~ia~d~~G~ly-~~~~~g~I~~~~-~~G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~ 152 (239)
.-+++..+|... ++..||.+..|+ |+-+.. ......+.-. .|.|.+||++++.-... ..++. .+| ......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 346666676555 555777777676 543321 1123345566 89999999888776554 33333 455 333322
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC--CC----eEEEecCCCCCcceEEEc
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LN----ETSILLDSLFFANGVALS 226 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~--~~----~~~~~~~~l~~pnGia~s 226 (239)
......+..++=...+....+|+..... +.++|-.+|.. .+ +.+...........+++|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecC---------------CCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 1111122222222212112666665441 23334333321 11 233333345556778899
Q ss_pred CCCCEEEE
Q 026389 227 KDEDYLVV 234 (239)
Q Consensus 227 ~dg~~lyv 234 (239)
.||+++-+
T Consensus 291 ~dGkf~Al 298 (398)
T KOG0771|consen 291 DDGKFLAL 298 (398)
T ss_pred CCCcEEEE
Confidence 99987654
No 205
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.25 E-value=3.9 Score=39.64 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=80.5
Q ss_pred eEEEcCCCCEE-EEeCCCeEEEEecCCcEEEeeeccCc--CccCeEEcCCCCEEEEeCCCCeEEEc--cCC---ceEEec
Q 026389 81 DVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGD--TLLGITTTQENEILVCDADKGLLKVT--EEG---VTVLAS 152 (239)
Q Consensus 81 ~ia~d~~G~ly-~~~~~g~I~~~~~~G~~~~~~~~~~~--p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g---~~~l~~ 152 (239)
++.++|||.+. ++.-|+++..|--| ...-+....|+ |.+.|-+.+|++|+|+-+...-+++. .=| .+.+++
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyflD-tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH 591 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFLD-TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH 591 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEec-ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence 56778889877 45577766655433 22223333343 43356666899999987776677776 223 344432
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-eEEEecCCCCCcceEEEcCCCCE
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSLFFANGVALSKDEDY 231 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-~~~~~~~~l~~pnGia~s~dg~~ 231 (239)
. + ....+.+-|+-.++||.+. .|.+-+||.+.- .+.++-.......-+|.+|+|++
T Consensus 592 d-D-----Svm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 592 D-D-----SVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred c-C-----ceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCCCe
Confidence 1 1 2356777888888998765 577888886532 23344444556677888888886
Q ss_pred EEE
Q 026389 232 LVV 234 (239)
Q Consensus 232 lyv 234 (239)
++-
T Consensus 649 vvs 651 (888)
T KOG0306|consen 649 VVS 651 (888)
T ss_pred EEe
Confidence 643
No 206
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=92.21 E-value=1.2 Score=39.98 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=64.3
Q ss_pred cCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ce--------------EEec-ccCCccccccccEEEcCCCCEEEEeC
Q 026389 115 GGDTLLGITTTQENEILVCDADKGLLKVTEEG-VT--------------VLAS-HVNGSRINLADDLIAATDGSIYFSVA 178 (239)
Q Consensus 115 ~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~--------------~l~~-~~~g~~~~~pn~l~vd~dG~iy~td~ 178 (239)
...-+ +++|+++|+|+.+-...|.+.+...+ +. .++. ...+ -..-+.+++..+|++..++.+
T Consensus 65 ~~aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 65 TRAVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred cceeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeee
Confidence 34567 89999999999887777766554211 11 1111 1111 112367888888887666654
Q ss_pred CCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCCEE
Q 026389 179 STKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYL 232 (239)
Q Consensus 179 ~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~~l 232 (239)
- ...++.||...|++.... +.-.+++|+|++|-++++
T Consensus 143 ~-----------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 143 V-----------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYV 180 (434)
T ss_pred c-----------------cceEEEEEeccceeEeeccccccccceeecchhhhhh
Confidence 3 346777888778876665 456789999999987754
No 207
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=92.05 E-value=0.51 Score=41.22 Aligned_cols=146 Identities=15% Similarity=0.229 Sum_probs=85.7
Q ss_pred eEeccCCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEE---------eeeccCcCccCeEEcCCCCEEEEeCCC
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWEN---------WKLIGGDTLLGITTTQENEILVCDADK 137 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~---------~~~~~~~p~~Gl~~d~~G~L~v~d~~~ 137 (239)
+.|.-|+-..+|+-.|+|||... +++.||.|-.|+- +|+.+. |.-.....+ .+.|.+|..++.+.+..
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQD 284 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcC
Confidence 44566667789999999999766 5669999988884 565421 111122334 67777777777777767
Q ss_pred CeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE-eCCCCeE-E
Q 026389 138 GLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLNET-S 211 (239)
Q Consensus 138 g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~-d~~~~~~-~ 211 (239)
|.+++. ..| .+.+- ..--....-+.+..|+.-..+.+. ....|+ ..++|+. .
T Consensus 285 GkIKvWri~tG~ClRrFd----rAHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LK 342 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFD----RAHTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLK 342 (508)
T ss_pred CcEEEEEEecchHHHHhh----hhhccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHH
Confidence 777665 455 33221 111122455667777754444322 112222 2333432 2
Q ss_pred EecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 212 ILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 212 ~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
.+...-.+.|...|++||.++.-+.|
T Consensus 343 EfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 343 EFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred HhcCccccccceEEcCCCCeEEEecC
Confidence 33344567888999999998776544
No 208
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.91 E-value=8 Score=33.74 Aligned_cols=97 Identities=10% Similarity=0.119 Sum_probs=47.6
Q ss_pred eEEEcCCCCEEEEeCCCeEEEEecCCc--EEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEcc--CCceEEecccC
Q 026389 81 DVCVDRNGVLYTATRDGWIKRLHKNGT--WENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVTE--EGVTVLASHVN 155 (239)
Q Consensus 81 ~ia~d~~G~ly~~~~~g~I~~~~~~G~--~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g~~~l~~~~~ 155 (239)
++...++|+++..+..|.+++-...|+ ++.+... ..+-. .|.|+++|+||+... .|.+++.+ +..+.......
T Consensus 149 ~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq-~~gf~~~~~lw~~~~-Gg~~~~s~~~~~~~~w~~~~~ 226 (302)
T PF14870_consen 149 DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQ-SMGFSPDGNLWMLAR-GGQIQFSDDPDDGETWSEPII 226 (302)
T ss_dssp EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EE-EEEE-TTS-EEEEET-TTEEEEEE-TTEEEEE---B-
T ss_pred eEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceeh-hceecCCCCEEEEeC-CcEEEEccCCCCccccccccC
Confidence 344556777665556666665332342 5544443 33444 888999999999885 46666653 22333322111
Q ss_pred Cc--cccccccEEEcCCCCEEEEeCC
Q 026389 156 GS--RINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 156 g~--~~~~pn~l~vd~dG~iy~td~~ 179 (239)
.. .-...-+++..+++.+|++-.+
T Consensus 227 ~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 227 PIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred CcccCceeeEEEEecCCCCEEEEeCC
Confidence 11 0112457788888888887654
No 209
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=91.86 E-value=3.2 Score=37.28 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=40.0
Q ss_pred eEeccCCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEE-EeeeccCcCccCeEEcCCCCEE
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWE-NWKLIGGDTLLGITTTQENEIL 131 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~-~~~~~~~~p~~Gl~~d~~G~L~ 131 (239)
.++..+--..+-+++|.++++.. +++-++.++.||. .|+.. ...+....+. |+++|+-+.-+
T Consensus 116 ~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq-gvawDpl~qyv 180 (434)
T KOG1009|consen 116 KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ-GVAWDPLNQYV 180 (434)
T ss_pred EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc-eeecchhhhhh
Confidence 33333334567788999988655 5667888888875 45543 3344566788 88888765433
No 210
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=91.68 E-value=0.16 Score=29.91 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=17.4
Q ss_pred cccccEEEcCCCCEEEEeCC
Q 026389 160 NLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 160 ~~pn~l~vd~dG~iy~td~~ 179 (239)
..+++|++|++|++|++-.+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 36899999999999998755
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=3.4 Score=37.03 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=69.8
Q ss_pred CcceEEEcCCCCEEEEe--CCCeEEEEecCCc-EEEeeec--cCcCccCeEEcCCC---CEEEEeCC--CCeEEE-c---
Q 026389 78 GPEDVCVDRNGVLYTAT--RDGWIKRLHKNGT-WENWKLI--GGDTLLGITTTQEN---EILVCDAD--KGLLKV-T--- 143 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~--~~g~I~~~~~~G~-~~~~~~~--~~~p~~Gl~~d~~G---~L~v~d~~--~g~~~v-~--- 143 (239)
.=+++.|.+||.+.++. ...+||..+ +|. +....+. .-.-- -++|..++ .|+++... .+.+.. +
T Consensus 188 eV~DL~FS~dgk~lasig~d~~~VW~~~-~g~~~a~~t~~~k~~~~~-~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~ 265 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGADSARVWSVN-TGAALARKTPFSKDEMFS-SCRFSVDNAQETLRLAASQFPGGGVRLCDISL 265 (398)
T ss_pred ccccceeCCCCcEEEEecCCceEEEEec-cCchhhhcCCcccchhhh-hceecccCCCceEEEEEecCCCCceeEEEeee
Confidence 34578999999776554 334555543 342 1111100 00111 34554444 56666532 222222 1
Q ss_pred cCCceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcc
Q 026389 144 EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFAN 221 (239)
Q Consensus 144 ~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pn 221 (239)
..+-..+...-.-..++....++|+.||++..-... .|.|..|+..+-+...+. ..+.+..
T Consensus 266 w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~-----------------dGsVai~~~~~lq~~~~vk~aH~~~VT 328 (398)
T KOG0771|consen 266 WSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM-----------------DGSVAIYDAKSLQRLQYVKEAHLGFVT 328 (398)
T ss_pred eccccccchhhhhhccCcceeEEEcCCCcEEEEecc-----------------CCcEEEEEeceeeeeEeehhhheeeee
Confidence 122011110001123456789999999986543322 478888887544443333 2345789
Q ss_pred eEEEcCCCCEE
Q 026389 222 GVALSKDEDYL 232 (239)
Q Consensus 222 Gia~s~dg~~l 232 (239)
+++|+||.+++
T Consensus 329 ~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 329 GLTFSPDSRYL 339 (398)
T ss_pred eEEEcCCcCcc
Confidence 99999998754
No 212
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.17 E-value=9 Score=37.84 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCeEEEEec-CCcEEEeeeccCc----------CccCeEEc-----------------CCCCEEEEeCCCC
Q 026389 87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGD----------TLLGITTT-----------------QENEILVCDADKG 138 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~----------p~~Gl~~d-----------------~~G~L~v~d~~~g 138 (239)
+|.||+++.+++|+.+|. +|+. .|...... -. |++.- .++++|+......
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~-lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE-KWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE-EEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 789999999999999996 4653 23211111 01 33221 2347888877777
Q ss_pred eEEEc-cCC
Q 026389 139 LLKVT-EEG 146 (239)
Q Consensus 139 ~~~v~-~~g 146 (239)
++.+| .+|
T Consensus 272 LiALDA~TG 280 (764)
T TIGR03074 272 LIALDADTG 280 (764)
T ss_pred EEEEECCCC
Confidence 88888 567
No 213
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.97 E-value=4.2 Score=37.11 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=62.3
Q ss_pred CCCEEEEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc---cCC-ce---EEecc----
Q 026389 87 NGVLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT---EEG-VT---VLASH---- 153 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~---~~g-~~---~l~~~---- 153 (239)
+.+||+++.|..+..||-. |..-.-......+. .+++|+.++ +|+..+...++... ..| .. +-...
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~-av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK-AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred cceEEEecCCceEEEEEeccceeeEEEecCCcce-eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 5689999989888888853 44322223344566 899999884 67666544333332 122 11 00000
Q ss_pred ----cCCc-cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 154 ----VNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 154 ----~~g~-~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
+.|. .-....=+++.-||++.++... .|.|..||..+++.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-----------------dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDE-----------------DGKVCVWDIYSKQC 311 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCC-----------------CCCEEEEecchHHH
Confidence 1111 1123456888899988887554 58888888876653
No 214
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.90 E-value=14 Score=35.47 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=69.2
Q ss_pred EEEcCC-CCEEEEeCCCeEEEEec---CCcEEEee--------eccCcCccCeEEcCCCC-EEEEeCCCCeEEE---c--
Q 026389 82 VCVDRN-GVLYTATRDGWIKRLHK---NGTWENWK--------LIGGDTLLGITTTQENE-ILVCDADKGLLKV---T-- 143 (239)
Q Consensus 82 ia~d~~-G~ly~~~~~g~I~~~~~---~G~~~~~~--------~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v---~-- 143 (239)
..|+++ +.||+.....++.++.. .+++.... ...+... .+++.+||. +.+.-. +.+.+ -
T Consensus 402 PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Is-sl~wSpDG~RiA~i~~--g~v~Va~Vvr~ 478 (591)
T PRK13616 402 PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPIS-ELQLSRDGVRAAMIIG--GKVYLAVVEQT 478 (591)
T ss_pred ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcC-eEEECCCCCEEEEEEC--CEEEEEEEEeC
Confidence 388888 46776653334444331 12221110 1133455 789999994 443332 33433 2
Q ss_pred cCCceEEeccc-CCcccc-ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc
Q 026389 144 EEGVTVLASHV-NGSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN 221 (239)
Q Consensus 144 ~~g~~~l~~~~-~g~~~~-~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn 221 (239)
.+|...+.... -...+. .+.+++...++.|++.... +.-.++++..++...+.+..+-..+.
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~----------------~~~~v~~v~vDG~~~~~~~~~n~~~~ 542 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD----------------PEHPVWYVNLDGSNSDALPSRNLSAP 542 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCEEEEEecC----------------CCCceEEEecCCccccccCCCCccCc
Confidence 34532221100 001111 2466778888888766432 23468888888554443232212344
Q ss_pred eEEEcCCCCEEEEEeCC
Q 026389 222 GVALSKDEDYLVVCETF 238 (239)
Q Consensus 222 Gia~s~dg~~lyvadt~ 238 (239)
.++++...+.+|++++.
T Consensus 543 v~~vaa~~~~iyv~~~~ 559 (591)
T PRK13616 543 VVAVAASPSTVYVTDAR 559 (591)
T ss_pred eEEEecCCceEEEEcCC
Confidence 45565555679988753
No 215
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=6.8 Score=38.90 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=50.3
Q ss_pred cCCcceEEEcCCCCEEEEe-CCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
...-.++.++|...+..+. .|+.|..||-+- .+++|.....|-. -++..|..+||.+.+..|.+.+.
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEE
Confidence 3445678899877777555 888888888654 3567766677777 78888999999999887776553
No 216
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.68 E-value=11 Score=32.95 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=62.1
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeeccC-----cCccCeEEcCCCCEEEEeCCCCeEEEc-cCCc--
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGG-----DTLLGITTTQENEILVCDADKGLLKVT-EEGV-- 147 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~~-----~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~-- 147 (239)
....+|+|..+.+-|+....+.|++=+..|+ ++....... +-. .+.++. .+.|++.. .+++... +.|.
T Consensus 17 ~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~-~I~f~~-~~g~ivG~-~g~ll~T~DgG~tW 93 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLN-SISFDG-NEGWIVGE-PGLLLHTTDGGKTW 93 (302)
T ss_dssp S-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEE-EEEEET-TEEEEEEE-TTEEEEESSTTSS-
T ss_pred CceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEE-EEEecC-CceEEEcC-CceEEEecCCCCCc
Confidence 4667788887677776666788887654443 544322211 223 566643 45666644 3555555 4442
Q ss_pred eEE--ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEE
Q 026389 148 TVL--ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVA 224 (239)
Q Consensus 148 ~~l--~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia 224 (239)
+.+ ....++. +..+....++.+++... .|.||+=.-.+..-+.+. +....-+++.
T Consensus 94 ~~v~l~~~lpgs----~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~ 151 (302)
T PF14870_consen 94 ERVPLSSKLPGS----PFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDIT 151 (302)
T ss_dssp EE----TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEE
T ss_pred EEeecCCCCCCC----eeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEE
Confidence 222 1223332 33445444555554432 266776554333434333 2234445666
Q ss_pred EcCCCCEEEEEeC
Q 026389 225 LSKDEDYLVVCET 237 (239)
Q Consensus 225 ~s~dg~~lyvadt 237 (239)
.++||++|.|+..
T Consensus 152 r~~dG~~vavs~~ 164 (302)
T PF14870_consen 152 RSSDGRYVAVSSR 164 (302)
T ss_dssp E-TTS-EEEEETT
T ss_pred ECCCCcEEEEECc
Confidence 6777777666543
No 217
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=90.65 E-value=12 Score=33.58 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=63.6
Q ss_pred cCCcceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CC-ceEEe
Q 026389 76 LNGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EG-VTVLA 151 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g-~~~l~ 151 (239)
...-+.|.|++.+.+|.++.|+.|.+||. .|+... ...++.+++.+...+.-+|++|......+++. + .+ -.++.
T Consensus 260 t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~-~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 260 TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKS-TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred ccceeeEEEcCCCceEeecccceEEEEEeeccccee-eeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence 33456789998999999999999999995 343222 12334554366666777899998777777775 3 33 33332
Q ss_pred cccCCccccccccEEEcCCC-CEEEEeC
Q 026389 152 SHVNGSRINLADDLIAATDG-SIYFSVA 178 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG-~iy~td~ 178 (239)
..+-|.. ++...+...|.. ..+++.+
T Consensus 339 ~s~~gH~-nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 339 QSLIGHK-NWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred Eeeecch-hhhhheecCCCCceEEEEEe
Confidence 2333322 356677777765 4555544
No 218
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=90.36 E-value=8.5 Score=37.66 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=55.5
Q ss_pred ceEEEcCCCCEE-EEeCCCeEEEEecCC------cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceEE
Q 026389 80 EDVCVDRNGVLY-TATRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVL 150 (239)
Q Consensus 80 e~ia~d~~G~ly-~~~~~g~I~~~~~~G------~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~l 150 (239)
...++.++++.. +++.+|||+.|..-| +.+.+--....-+ +++|..+|..+.+....+.+.+. ..+.+.+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf 287 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKKQF 287 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeecccceEEEEEeecCCCccc
Confidence 346777888766 556889998887433 1122222223455 89999999544443335666555 3333333
Q ss_pred ecccCCccccccccEEEcCCCCEEEEeC
Q 026389 151 ASHVNGSRINLADDLIAATDGSIYFSVA 178 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~ 178 (239)
.....+ + .-++.+.+|+..|..-.
T Consensus 288 LPRLgs-~---I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 288 LPRLGS-P---ILHIVVSPDSDLYSLVL 311 (792)
T ss_pred ccccCC-e---eEEEEEcCCCCeEEEEe
Confidence 333222 2 35799999998886543
No 219
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.03 E-value=13 Score=32.94 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=74.6
Q ss_pred cCCcceEEEcC--CCCEEEEeCCCeEEEEe--cCCcEEEee----eccCcCcc--CeEEcCCCCEEEEeCCCCeEEEccC
Q 026389 76 LNGPEDVCVDR--NGVLYTATRDGWIKRLH--KNGTWENWK----LIGGDTLL--GITTTQENEILVCDADKGLLKVTEE 145 (239)
Q Consensus 76 ~~gPe~ia~d~--~G~ly~~~~~g~I~~~~--~~G~~~~~~----~~~~~p~~--Gl~~d~~G~L~v~d~~~g~~~v~~~ 145 (239)
+.-|.+.-+-| +.+++.-+.||++..+. .+|+...-. .....|+. .......+++|.......++.++-.
T Consensus 134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 44555544444 45677778999987765 567643211 11122220 1112234466665544444555533
Q ss_pred C--ceEEec-----c---cCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389 146 G--VTVLAS-----H---VNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 146 g--~~~l~~-----~---~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~ 214 (239)
| .+.... . .++=+-..-.-+++++. |++|+--.....+.++ .+.-.||.||.++++...-+
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK--------dpgteVWv~D~~t~krv~Ri 285 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK--------DPGTEVWVYDLKTHKRVARI 285 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT--------S-EEEEEEEETTTTEEEEEE
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc--------CCceEEEEEECCCCeEEEEE
Confidence 3 322211 0 11111123345788764 7899864322222221 13347899999988754433
Q ss_pred CCCCCcceEEEcCCCC-EEEEE
Q 026389 215 DSLFFANGVALSKDED-YLVVC 235 (239)
Q Consensus 215 ~~l~~pnGia~s~dg~-~lyva 235 (239)
.--...++|+++.|.+ .||..
T Consensus 286 ~l~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 286 PLEHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp EEEEEESEEEEESSSS-EEEEE
T ss_pred eCCCccceEEEccCCCcEEEEE
Confidence 3223356889988877 45543
No 220
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=89.26 E-value=7.2 Score=35.74 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=37.7
Q ss_pred cEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389 164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 164 ~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
.-.+.||| +|.|+... .++-.||.+|.+++++..+......-..=.++|||++++++
T Consensus 242 ~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~ 299 (425)
T COG0823 242 APAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFT 299 (425)
T ss_pred CccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEE
Confidence 34566777 45565443 23567999999988866654444333455689999988765
No 221
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.25 E-value=4 Score=36.33 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=24.6
Q ss_pred CceEEEEeCCCCeE-EEecCCCCCcceEEEcCCCCEEEEE
Q 026389 197 HGKLLKYDPSLNET-SILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 197 ~g~v~~~d~~~~~~-~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
.+.++.||...+.. +.+.-+ -.+|+|+|+| +-+.|++
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnP-eafnF~~ 246 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILT-MRTNTICWNP-EAFNFVA 246 (433)
T ss_pred CCceEEEecccCCccceeeee-ccccceecCc-cccceee
Confidence 57889999876543 233322 4689999999 4555554
No 222
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=89.23 E-value=13 Score=33.06 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=52.4
Q ss_pred CCCeEEEEecCC-c-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCe-EEEc--cCCceEEecccCCccccccccEEEcC
Q 026389 95 RDGWIKRLHKNG-T-WENWKLIGGDTLLGITTTQENEILVCDADKGL-LKVT--EEGVTVLASHVNGSRINLADDLIAAT 169 (239)
Q Consensus 95 ~~g~I~~~~~~G-~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~-~~v~--~~g~~~l~~~~~g~~~~~pn~l~vd~ 169 (239)
..|.|+.||... + +..+....+.-. .|+|+++|.++.+.+.+|. ++|. ++|.+ +.+.-.|........+++++
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lA-alafs~~G~llATASeKGTVIRVf~v~~G~k-l~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLA-ALAFSPDGTLLATASEKGTVIRVFSVPEGQK-LYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCcee-EEEECCCCCEEEEeccCceEEEEEEcCCccE-eeeeeCCceeeEEEEEEECC
Confidence 568999998643 2 223333334444 7999999999998877764 5665 67711 11112344345577899999
Q ss_pred CCCEEEEeCC
Q 026389 170 DGSIYFSVAS 179 (239)
Q Consensus 170 dG~iy~td~~ 179 (239)
|+.+..+.++
T Consensus 229 ds~~L~~sS~ 238 (391)
T KOG2110|consen 229 DSQFLAASSN 238 (391)
T ss_pred CCCeEEEecC
Confidence 9986555444
No 223
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=89.22 E-value=1.8 Score=37.95 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=82.6
Q ss_pred CCCCCCCcccchhhhhHHH-----HHHHHHHHHHhhccCCCccccccCCCCCCC-CCCCCCcccccceEeccCCcCCcce
Q 026389 8 PPTTGSSSKRCVPVCSGIV-----LSCLLAFTLQIFFFSPISPDLLLLPPASSA-SLIPTTSDIQSVTRLGEGILNGPED 81 (239)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~-g~~~~n~~l~~~~~l~~g~~~gPe~ 81 (239)
+=++.+|-|.|-.+-.+.- ..++. .+..+|.++....+---... |.+....+ .....++ |.-.|-..
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giis-----c~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llg-gh~gGvTh 255 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIIS-----CFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLG-GHGGGVTH 255 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceee-----eeeccCCCCcceeeecccceeeeEecCCC-Cceeeec-ccCCCeee
Confidence 3457788888877655333 22222 24446666644333222222 44443321 1223333 44567778
Q ss_pred EEEcCCC-CEEEEe-CCCeEEEEecCCcEE-Ee-----ee-ccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cC--CceE
Q 026389 82 VCVDRNG-VLYTAT-RDGWIKRLHKNGTWE-NW-----KL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EE--GVTV 149 (239)
Q Consensus 82 ia~d~~G-~ly~~~-~~g~I~~~~~~G~~~-~~-----~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~--g~~~ 149 (239)
+.|.++| ++|++. .+.+|..||.-.... ++ .. +..|. =.-+|++|+++++....|.+++. .+ |.++
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI--~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI--LFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE--EEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 8999987 577887 788999998522111 11 01 11111 13335888999887778888886 22 3222
Q ss_pred EecccCCccccccccEEEcCCCCEEEEe
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSV 177 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td 177 (239)
.+.... -.-.|++...|-=-|..|.
T Consensus 334 sv~~~~---sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 334 SVTGNY---SDTVNGVSLNPIMPILATS 358 (406)
T ss_pred cccccc---cccccceecCcccceeeec
Confidence 211111 1235777777663344443
No 224
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.16 E-value=18 Score=33.67 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=43.3
Q ss_pred CCEEEEeC-----CCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEEecccCCccccc
Q 026389 88 GVLYTATR-----DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINL 161 (239)
Q Consensus 88 G~ly~~~~-----~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l~~~~~g~~~~~ 161 (239)
..||+... .+..+.+|.+|.++-..........-+...++|+|++... ..+..+|..| +.... ...+....+
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~-~l~~~~~~~ 191 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEY-DLPGGYYDF 191 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEE-E--TTEE-B
T ss_pred CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEee-ecCCccccc
Confidence 45664443 5678889988987533332222210256678999988776 6777888777 32222 222211223
Q ss_pred cccEEEcCCCCEEEEe
Q 026389 162 ADDLIAATDGSIYFSV 177 (239)
Q Consensus 162 pn~l~vd~dG~iy~td 177 (239)
=.|+...++|++++..
T Consensus 192 HHD~~~l~nGn~L~l~ 207 (477)
T PF05935_consen 192 HHDIDELPNGNLLILA 207 (477)
T ss_dssp -S-EEE-TTS-EEEEE
T ss_pred ccccEECCCCCEEEEE
Confidence 4699999999766544
No 225
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.05 E-value=15 Score=32.04 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=61.1
Q ss_pred CcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccC-------------cCccCeEEc----CCCCEEEEeCC--
Q 026389 78 GPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGG-------------DTLLGITTT----QENEILVCDAD-- 136 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~-------------~p~~Gl~~d----~~G~L~v~d~~-- 136 (239)
--.+|..+++|.+.+++ ....|+++++ +|++. |...+. .-+ ...+. .++.|-+-|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~-W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN~~~ 222 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKII-WRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDNANS 222 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEE-EEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcCCCC
Confidence 34567777889988888 6688999994 66653 322111 123 33443 44555555541
Q ss_pred ---------CCeEEEcc-CC-ceEEeccc-CCcccc--ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEE
Q 026389 137 ---------KGLLKVTE-EG-VTVLASHV-NGSRIN--LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK 202 (239)
Q Consensus 137 ---------~g~~~v~~-~g-~~~l~~~~-~g~~~~--~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~ 202 (239)
..++.++. +. ++++.... ...++. ..=.+..-++|+++++... .|++.-
T Consensus 223 ~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~-----------------~g~~~E 285 (299)
T PF14269_consen 223 DFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN-----------------NGRISE 285 (299)
T ss_pred CCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC-----------------CceEEE
Confidence 12455663 33 33333222 111221 1224556677888888766 578888
Q ss_pred EeCC
Q 026389 203 YDPS 206 (239)
Q Consensus 203 ~d~~ 206 (239)
|+++
T Consensus 286 ~~~~ 289 (299)
T PF14269_consen 286 FTPD 289 (299)
T ss_pred ECCC
Confidence 8886
No 226
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=89.02 E-value=2.7 Score=37.79 Aligned_cols=139 Identities=14% Similarity=0.217 Sum_probs=79.6
Q ss_pred ceEeccCCcCCc-ceEEEcCCC-CEEEEeCCCeEEEEecCCcEEEe---eeccCcCccCeEEcCCCCEEEEeCCCCeEEE
Q 026389 68 VTRLGEGILNGP-EDVCVDRNG-VLYTATRDGWIKRLHKNGTWENW---KLIGGDTLLGITTTQENEILVCDADKGLLKV 142 (239)
Q Consensus 68 ~~~l~~g~~~gP-e~ia~d~~G-~ly~~~~~g~I~~~~~~G~~~~~---~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v 142 (239)
.......+...| ..|.|.|+| +|.+++..|..-.|+ |..-.| ....-.|.+++.+..+|.-.|+....|.+++
T Consensus 87 f~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWN--g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 87 FVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWN--GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred eEeccccccccceeeEEEcCCCceeEeecccccEEEec--CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEe
Confidence 333343444433 357888886 688888888887775 322222 1112233338888899987777666788888
Q ss_pred cc-CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe-EEEecCCCC
Q 026389 143 TE-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLF 218 (239)
Q Consensus 143 ~~-~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~-~~~~~~~l~ 218 (239)
.. += ++.+... .-....++++.|+...|+|-+. .|+|..+|-.-.+ -+++...-+
T Consensus 165 WqpnmnnVk~~~ah----h~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgw 223 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAH----HAEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGW 223 (464)
T ss_pred cccchhhhHHhhHh----hhhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCC
Confidence 73 32 3322111 1123578899988888888765 4667667654322 233333334
Q ss_pred CcceEEEcCCC
Q 026389 219 FANGVALSKDE 229 (239)
Q Consensus 219 ~pnGia~s~dg 229 (239)
-+..+.+.|.-
T Consensus 224 dVksvdWHP~k 234 (464)
T KOG0284|consen 224 DVKSVDWHPTK 234 (464)
T ss_pred CcceeccCCcc
Confidence 45555555543
No 227
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.95 E-value=1.9 Score=38.84 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=41.9
Q ss_pred CCcceEEEcC-CCCEEEEeCCCeEEEEecC--C-cE-EEeeeccC-----cCccCeEE--cCC--CCEEEEeCCCCeEEE
Q 026389 77 NGPEDVCVDR-NGVLYTATRDGWIKRLHKN--G-TW-ENWKLIGG-----DTLLGITT--TQE--NEILVCDADKGLLKV 142 (239)
Q Consensus 77 ~gPe~ia~d~-~G~ly~~~~~g~I~~~~~~--G-~~-~~~~~~~~-----~p~~Gl~~--d~~--G~L~v~d~~~g~~~v 142 (239)
..+||+++|. .|.||++..+--||+|+.+ + .. +.+....+ ..- ||++ ..+ |.|+|++.+.+.+.+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvE-Glaly~~~~g~gYLivSsQG~~sf~V 286 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVE-GLALYYGSDGKGYLIVSSQGDNSFAV 286 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EE-EEEEEE-CCC-EEEEEEEGGGTEEEE
T ss_pred CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCcc-ceEEEecCCCCeEEEEEcCCCCeEEE
Confidence 5799999996 7999999999999999853 2 22 22222111 233 5655 233 457777777766666
Q ss_pred c
Q 026389 143 T 143 (239)
Q Consensus 143 ~ 143 (239)
.
T Consensus 287 y 287 (381)
T PF02333_consen 287 Y 287 (381)
T ss_dssp E
T ss_pred E
Confidence 5
No 228
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=88.93 E-value=6.2 Score=36.65 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCeEEEEecCCc--E--EEeee---ccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCc
Q 026389 87 NGVLYTATRDGWIKRLHKNGT--W--ENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGS 157 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~~G~--~--~~~~~---~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~ 157 (239)
..++|++. .|.|..||..+. . ....+ ...... .+.+.+||+-++.......+.+. ... ...+..+....
T Consensus 431 trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiR-SckL~pdgrtLivGGeastlsiWDLAapTprikaeltss 508 (705)
T KOG0639|consen 431 TRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIR-SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS 508 (705)
T ss_pred cceeEecC-CCeEEEeeccCCCCCCccccccccCccccee-eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCc
Confidence 45667654 455666664321 1 11111 122333 55666888644443334445544 222 11111111111
Q ss_pred cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCCCCEEEE
Q 026389 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVV 234 (239)
Q Consensus 158 ~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~dg~~lyv 234 (239)
--.+..+++.+|-.+-|+..+ .|.|..||.....+..-..+ --.+.-|.+++||..||.
T Consensus 509 -apaCyALa~spDakvcFsccs-----------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT 568 (705)
T KOG0639|consen 509 -APACYALAISPDAKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT 568 (705)
T ss_pred -chhhhhhhcCCccceeeeecc-----------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec
Confidence 124678999999999998876 58899999864433222221 223455788999988764
No 229
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=88.83 E-value=0.78 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=11.7
Q ss_pred CCcceEEEcCCCCEEEE
Q 026389 77 NGPEDVCVDRNGVLYTA 93 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~ 93 (239)
..+.+|++|++|++|++
T Consensus 13 ~~~~~IavD~~GNiYv~ 29 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVT 29 (38)
T ss_pred eeEEEEEECCCCCEEEE
Confidence 35677777777777754
No 230
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=88.82 E-value=4.4 Score=34.02 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=14.7
Q ss_pred CeEEc-CCCCEEEEeCCCCeEEEc-cCC
Q 026389 121 GITTT-QENEILVCDADKGLLKVT-EEG 146 (239)
Q Consensus 121 Gl~~d-~~G~L~v~d~~~g~~~v~-~~g 146 (239)
||.+. .+|+||-.....+++.++ ..|
T Consensus 31 GID~Rpa~G~LYgl~~~g~lYtIn~~tG 58 (236)
T PF14339_consen 31 GIDFRPANGQLYGLGSTGRLYTINPATG 58 (236)
T ss_pred EEEeecCCCCEEEEeCCCcEEEEECCCC
Confidence 45444 345666665556666666 355
No 231
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.69 E-value=0.84 Score=41.62 Aligned_cols=61 Identities=28% Similarity=0.284 Sum_probs=32.2
Q ss_pred cccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeE----EEecCCC---------------C
Q 026389 160 NLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NET----SILLDSL---------------F 218 (239)
Q Consensus 160 ~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~----~~~~~~l---------------~ 218 (239)
..+.||.++-|. .|||+... +|.|..||... ... ++.+.+. .
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp -----EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred CceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 357899999998 68999865 57787887532 111 1112221 2
Q ss_pred CcceEEEcCCCCEEEEEeC
Q 026389 219 FANGVALSKDEDYLVVCET 237 (239)
Q Consensus 219 ~pnGia~s~dg~~lyvadt 237 (239)
.|+-|.+|.||++|||+.|
T Consensus 375 gPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ----EEE-TTSSEEEEE--
T ss_pred CCCeEEEccCCeEEEEEee
Confidence 5788999999999999987
No 232
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=88.65 E-value=14 Score=31.44 Aligned_cols=98 Identities=15% Similarity=0.217 Sum_probs=57.6
Q ss_pred CcceEEEcCCCCEEEEeCCCeEEEEecC--CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCC-eEEEc-cCCceEEecc
Q 026389 78 GPEDVCVDRNGVLYTATRDGWIKRLHKN--GTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEGVTVLASH 153 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~--G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g-~~~v~-~~g~~~l~~~ 153 (239)
-+.++.+.++|++.+....+.|.-||++ +.++.+.- ..... ...+.|+..+|||..... ++++| ..|.++-. .
T Consensus 186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~-SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~ 262 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVE-SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-Y 262 (334)
T ss_pred CCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccc-cccccCCCceEEecCcceEEEEEeccCCceeee-c
Confidence 4567777788888877777777777763 22222211 11222 334457778999975544 44566 56633221 0
Q ss_pred cCCccccccccEEEcCCCCEEEEeCC
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
..| -+.-..-+.+.|||.+|.+.+.
T Consensus 263 nkg-h~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 263 NKG-HFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ccC-CCCceEEEEECCCCceeeccCC
Confidence 111 1223457889999999998764
No 233
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.62 E-value=2 Score=24.88 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=26.6
Q ss_pred CCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEc
Q 026389 88 GVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTT 125 (239)
Q Consensus 88 G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d 125 (239)
++||+++ .++.|..+|. +++.......+..|. +++++
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS 42 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence 4699888 6789999996 344444455577898 88774
No 234
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.53 E-value=4.7 Score=38.86 Aligned_cols=135 Identities=16% Similarity=0.247 Sum_probs=74.2
Q ss_pred ceEEEcCCCCEE-EEeCCCeEEEEe-cCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceEEecc
Q 026389 80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVLASH 153 (239)
Q Consensus 80 e~ia~d~~G~ly-~~~~~g~I~~~~-~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~l~~~ 153 (239)
..+++++|+... +....+-+..|+ +.|+. +.|......|-..++|++.|.|+.+-...|.+++. .++ ...-...
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG 145 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG 145 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC
Confidence 357788876544 444444333344 35542 34433333443389999999777666557777775 444 3332222
Q ss_pred cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE--EEecCCCCCcceEEEcCCCCE
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSKDEDY 231 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~--~~~~~~l~~pnGia~s~dg~~ 231 (239)
..| -...+.+.++-+.|. +..+...+.+..||..++.. .++......-.++++++|+..
T Consensus 146 ~gG----vVssl~F~~~~~~~l---------------L~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~ 206 (775)
T KOG0319|consen 146 HGG----VVSSLLFHPHWNRWL---------------LASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE 206 (775)
T ss_pred CCc----eEEEEEeCCccchhh---------------eeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce
Confidence 222 123444554432111 11223468888898875544 223344567789999999876
Q ss_pred EE
Q 026389 232 LV 233 (239)
Q Consensus 232 ly 233 (239)
++
T Consensus 207 ~l 208 (775)
T KOG0319|consen 207 LL 208 (775)
T ss_pred EE
Confidence 54
No 235
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.51 E-value=15 Score=31.54 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=38.7
Q ss_pred EEcC-CCCEEEEeCCCeEEEEecCCcEEEeeeccC--cCccCeEEcC-CCCEEEEeCCCCeEEEc-cCC
Q 026389 83 CVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGG--DTLLGITTTQ-ENEILVCDADKGLLKVT-EEG 146 (239)
Q Consensus 83 a~d~-~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~--~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~~g 146 (239)
..|. .|.||.+++|+..+.+|+.-+--++...++ .-. +-++++ ++.||++.....++++. .++
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~-sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV-SPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceec-cceecCCCceEEEEeccceEEEEccCCC
Confidence 3444 457788888888888886433223332222 122 444554 78899998877788887 344
No 236
>PRK13614 lipoprotein LpqB; Provisional
Probab=88.49 E-value=23 Score=33.83 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=54.2
Q ss_pred cCCcceEEEcCCCCEEEEeCC--CeEEEEecCCc--EE-----Ee--eeccCc-CccCeEEcCCC-CEEE-E-eCCCCeE
Q 026389 76 LNGPEDVCVDRNGVLYTATRD--GWIKRLHKNGT--WE-----NW--KLIGGD-TLLGITTTQEN-EILV-C-DADKGLL 140 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~~~--g~I~~~~~~G~--~~-----~~--~~~~~~-p~~Gl~~d~~G-~L~v-~-d~~~g~~ 140 (239)
+..| .||.+|.+|+...+ ++|+++..+|+ .. .. ....++ .. .+++.+|| |+.+ . +.++..+
T Consensus 385 Lt~P---S~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~-~lrvSrDG~R~Avi~~~~g~~~V 460 (573)
T PRK13614 385 LTRP---SFSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVK-ELRVSREGVRALVISEQNGKSRV 460 (573)
T ss_pred ccCC---cccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeE-EEEECCCccEEEEEEEeCCccEE
Confidence 4556 88888999987754 48999876553 10 11 112233 44 78888999 5433 3 2333223
Q ss_pred EE-----ccCC-ceEEecccCCccccccccEEEcCCCCEEEEeC
Q 026389 141 KV-----TEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVA 178 (239)
Q Consensus 141 ~v-----~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~ 178 (239)
.+ +.+| ...|.....=.....+.+++.-.++.|.+.-.
T Consensus 461 ~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~ 504 (573)
T PRK13614 461 QVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKA 504 (573)
T ss_pred EEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEec
Confidence 22 3455 23443211100123567788778888877653
No 237
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=88.38 E-value=11 Score=32.70 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=69.0
Q ss_pred eEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEE-eCCCCeEEEc--cC-C-ceEEec
Q 026389 81 DVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT--EE-G-VTVLAS 152 (239)
Q Consensus 81 ~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~-d~~~g~~~v~--~~-g-~~~l~~ 152 (239)
++.+.+|++.. .+..|.+|..||. .|+. ..+.......+ .+....-|-..|+ -+..+.+++. .. . .+++..
T Consensus 95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vN-s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ 173 (338)
T KOG0265|consen 95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVN-SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN 173 (338)
T ss_pred eeeeccCCCEEEEecCCceEEEEecccceeeehhccccceee-ecCccccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence 45666777644 5558889999985 4542 22222222333 3333344544444 3446667664 22 2 333321
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC-CcceEEEcCCCCE
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDY 231 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~-~pnGia~s~dg~~ 231 (239)
.+ ....+.+..++.=.++.. -++.|-.||+..++......|-. -..||.++++|.+
T Consensus 174 ky------qltAv~f~d~s~qv~sgg-----------------Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 174 KY------QLTAVGFKDTSDQVISGG-----------------IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF 230 (338)
T ss_pred ce------eEEEEEecccccceeecc-----------------ccCceeeeccccCcceEEeecccCceeeEEeccCCCc
Confidence 11 123455555543333322 24667788886566555555433 3488999999987
Q ss_pred EE
Q 026389 232 LV 233 (239)
Q Consensus 232 ly 233 (239)
+.
T Consensus 231 ll 232 (338)
T KOG0265|consen 231 LL 232 (338)
T ss_pred cc
Confidence 64
No 238
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.14 E-value=21 Score=32.84 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=71.8
Q ss_pred EEEcC-CCCEEEEeCCCeEEE-EecCCcEEEeeeccCcC---ccCeEEc-CCCCEEEEeCCCCeEEEccCC--ceEEecc
Q 026389 82 VCVDR-NGVLYTATRDGWIKR-LHKNGTWENWKLIGGDT---LLGITTT-QENEILVCDADKGLLKVTEEG--VTVLASH 153 (239)
Q Consensus 82 ia~d~-~G~ly~~~~~g~I~~-~~~~G~~~~~~~~~~~p---~~Gl~~d-~~G~L~v~d~~~g~~~v~~~g--~~~l~~~ 153 (239)
+-|.+ ++.+++...|+++.+ |+.++... ..+..++. . ..++. .++.++++.++.|.+++.... ...+.+.
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 34445 455665555666655 44555432 22222221 1 22233 455799999999999987432 2334433
Q ss_pred cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEecC-CCCCcceEEEcCCCCE
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLD-SLFFANGVALSKDEDY 231 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~~~-~l~~pnGia~s~dg~~ 231 (239)
-.|.| ...+..-|.|.++++... ..+-.||..+ ++...... ....-..+++..|++.
T Consensus 194 nhg~p---Ve~vl~lpsgs~iasAgG------------------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 194 NHGCP---VESVLALPSGSLIASAGG------------------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred cCCCc---eeeEEEcCCCCEEEEcCC------------------CeEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence 34544 357788888888888754 3455677653 33322222 2233466777777766
Q ss_pred EEE
Q 026389 232 LVV 234 (239)
Q Consensus 232 lyv 234 (239)
|+-
T Consensus 253 LlS 255 (487)
T KOG0310|consen 253 LLS 255 (487)
T ss_pred Eee
Confidence 653
No 239
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=88.13 E-value=1 Score=39.27 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=42.6
Q ss_pred cccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEEEe
Q 026389 162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCE 236 (239)
Q Consensus 162 pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyvad 236 (239)
.+-+.+.+.|.+...... +|||..||..|..+..++..-..| ..+|+|+||+.|+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~-----------------nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA-----------------NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS 84 (405)
T ss_pred cceEEeccCcceeeeecc-----------------CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec
Confidence 567778888875554433 699999999987765555554444 7899999999887653
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.11 E-value=10 Score=33.96 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=68.4
Q ss_pred EEEEeCCCeEEEEecCCcEEEee--eccCcCccCeEEcCCCC-EEEEeCCCCeEEEccCCceEEecccCCccccccccEE
Q 026389 90 LYTATRDGWIKRLHKNGTWENWK--LIGGDTLLGITTTQENE-ILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLI 166 (239)
Q Consensus 90 ly~~~~~g~I~~~~~~G~~~~~~--~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~~~g~~~l~~~~~g~~~~~pn~l~ 166 (239)
+.+++.-+++..||+.-+.+.+. +....|++.+...++|+ +|+++....+..+|-.+..++...+.|. -..+.+|.
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih 297 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIH 297 (412)
T ss_pred EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEE
Confidence 34555788898898643222222 22234443566678885 7888887777788843323332222221 13578899
Q ss_pred EcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC
Q 026389 167 AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230 (239)
Q Consensus 167 vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~ 230 (239)
.++.+.+..+-.-.+ .|-.||.++.++..-.---..+|+|-+.++-+
T Consensus 298 ~hp~~~~las~GLDR-----------------yvRIhD~ktrkll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDR-----------------YVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred EcCCCceEEeeccce-----------------eEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence 999888776654311 23346665432211111234678888866543
No 241
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=87.87 E-value=3.5 Score=38.50 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=52.5
Q ss_pred CEEEEeCCCeEEEEecCCcEEEee-eccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceEEecccCCcccccccc
Q 026389 89 VLYTATRDGWIKRLHKNGTWENWK-LIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADD 164 (239)
Q Consensus 89 ~ly~~~~~g~I~~~~~~G~~~~~~-~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~l~~~~~g~~~~~pn~ 164 (239)
.+.+++.||++..++..|+++... ...+..+ .-++++||.-+++....|.+++. ..| .++++...+ + ..-
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~--~---v~c 150 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEE--S---IRC 150 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCc--e---eEE
Confidence 455777899999999888775432 2334444 55667888766776678888887 677 444433211 1 234
Q ss_pred EEEcCCC-CEEEEeCC
Q 026389 165 LIAATDG-SIYFSVAS 179 (239)
Q Consensus 165 l~vd~dG-~iy~td~~ 179 (239)
++.+|+- ++.++...
T Consensus 151 ~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGG 166 (737)
T ss_pred EEECCCCCceEEecCC
Confidence 5556653 55555443
No 242
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=87.80 E-value=11 Score=32.94 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=37.9
Q ss_pred CeEEcCCCCEEEEeCCCCeEEEcc--CC--ceEEecccCCccccccccEEEcCCCCEEEEeC
Q 026389 121 GITTTQENEILVCDADKGLLKVTE--EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVA 178 (239)
Q Consensus 121 Gl~~d~~G~L~v~d~~~g~~~v~~--~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~ 178 (239)
.+.....|+|||+.+..|-+++.+ .+ ++.+...-+|.. .-...+..+|....+..
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse---vcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE---VCSAVFTKNGKYILSSG 324 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce---eeeEEEccCCeEEeecC
Confidence 466678899999999999998863 33 566655444432 34567888887666643
No 243
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.77 E-value=13 Score=32.91 Aligned_cols=136 Identities=19% Similarity=0.145 Sum_probs=71.0
Q ss_pred eEEEcCCCC-EEEEe--CCC---eEEEEec-CCcEEEeee--ccC---cCccCeEEc-CCC-C-EEEEeCC--CCeEEEc
Q 026389 81 DVCVDRNGV-LYTAT--RDG---WIKRLHK-NGTWENWKL--IGG---DTLLGITTT-QEN-E-ILVCDAD--KGLLKVT 143 (239)
Q Consensus 81 ~ia~d~~G~-ly~~~--~~g---~I~~~~~-~G~~~~~~~--~~~---~p~~Gl~~d-~~G-~-L~v~d~~--~g~~~v~ 143 (239)
.+.|.+++. +++.- .++ ++..++. .|+.+.... ..+ ... ...+- +++ . |++.+.. .+++.++
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~-~~~~~~~~~~~~l~~s~~~G~~hly~~~ 266 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD-PPHFLGPDGNEFLWISERDGYRHLYLYD 266 (353)
T ss_dssp EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS-EEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec-ccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence 466767776 76543 333 3455554 344332211 111 112 33332 444 3 4555521 2455556
Q ss_pred cCC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCC-CCeEEEecCCCCC
Q 026389 144 EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETSILLDSLFF 219 (239)
Q Consensus 144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-~~~~~~~~~~l~~ 219 (239)
.++ .+.|.. | .+.--.-+.+|+++ .|||+..... ...-.||+++.+ +++++.+-.. ..
T Consensus 267 ~~~~~~~~lT~---G-~~~V~~i~~~d~~~~~iyf~a~~~~-------------p~~r~lY~v~~~~~~~~~~LT~~-~~ 328 (353)
T PF00930_consen 267 LDGGKPRQLTS---G-DWEVTSILGWDEDNNRIYFTANGDN-------------PGERHLYRVSLDSGGEPKCLTCE-DG 328 (353)
T ss_dssp TTSSEEEESS----S-SS-EEEEEEEECTSSEEEEEESSGG-------------TTSBEEEEEETTETTEEEESSTT-SS
T ss_pred ccccceecccc---C-ceeecccceEcCCCCEEEEEecCCC-------------CCceEEEEEEeCCCCCeEeccCC-CC
Confidence 444 343322 2 11112246778875 8999876511 123579999998 7887766543 33
Q ss_pred cc-eEEEcCCCCEEEEE
Q 026389 220 AN-GVALSKDEDYLVVC 235 (239)
Q Consensus 220 pn-Gia~s~dg~~lyva 235 (239)
.+ .+.|||||+++..+
T Consensus 329 ~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 329 DHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TTEEEEE-TTSSEEEEE
T ss_pred CceEEEECCCCCEEEEE
Confidence 44 89999999977654
No 244
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=87.65 E-value=18 Score=31.91 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=50.1
Q ss_pred CcCccCeEEcCCCCEEEEeCCCCeEEEcc--CC--ceEEecccCCccccccccEEEcCCC--CEEEEeCCCCcCcccccc
Q 026389 116 GDTLLGITTTQENEILVCDADKGLLKVTE--EG--VTVLASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGL 189 (239)
Q Consensus 116 ~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g--~~~l~~~~~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~ 189 (239)
...+ -..|..||.-+++-+..|.+++.. .+ ...+...-.+ ...|.+..-|.. .+.+.+-+
T Consensus 349 Syvn-~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVCNrs---------- 414 (508)
T KOG0275|consen 349 SYVN-EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD---YPVNSVILLPKNPEHFIVCNRS---------- 414 (508)
T ss_pred cccc-ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc---ccceeEEEcCCCCceEEEEcCC----------
Confidence 3445 677778887666666678888863 32 3333211111 123444444442 34444433
Q ss_pred cceeecCCceEEEEeCCCCeEEEecCC----CCCcceEEEcCCCCEEEEE
Q 026389 190 DLLEAKPHGKLLKYDPSLNETSILLDS----LFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 190 ~~~e~~~~g~v~~~d~~~~~~~~~~~~----l~~pnGia~s~dg~~lyva 235 (239)
..||..+..+.-++.+..+ .-|. ..++||.|.++|..
T Consensus 415 --------ntv~imn~qGQvVrsfsSGkREgGdFi-~~~lSpkGewiYci 455 (508)
T KOG0275|consen 415 --------NTVYIMNMQGQVVRSFSSGKREGGDFI-NAILSPKGEWIYCI 455 (508)
T ss_pred --------CeEEEEeccceEEeeeccCCccCCceE-EEEecCCCcEEEEE
Confidence 4566666653323333222 2232 35688889888864
No 245
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=6 Score=32.78 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCCCEEEEeCC-CCeEEEcc-CC-ceEEec--------ccCCccccccccEEEcCCC-CEEEEeCC
Q 026389 126 QENEILVCDAD-KGLLKVTE-EG-VTVLAS--------HVNGSRINLADDLIAATDG-SIYFSVAS 179 (239)
Q Consensus 126 ~~G~L~v~d~~-~g~~~v~~-~g-~~~l~~--------~~~g~~~~~pn~l~vd~dG-~iy~td~~ 179 (239)
-+|.||.--.. ..++++++ +| +....+ ..++...+-+||++.++++ ++|+|.-.
T Consensus 184 VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 184 VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 46777765443 46778884 67 332221 1233445689999999986 99999643
No 246
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.42 E-value=3.6 Score=43.26 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=59.3
Q ss_pred eCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEEecccCCccccccccEEEcCCC
Q 026389 94 TRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDG 171 (239)
Q Consensus 94 ~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG 171 (239)
.+++++|+|+++ +.|+........+++-|....||.||. -.+..++.+...+ .+..++. .-...|.++|
T Consensus 379 lHd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~l~nLSs~~~~~~~v~~--------l~sfSv~~~g 449 (1774)
T PF11725_consen 379 LHDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDTLVNLSSGQMSEAEVDK--------LKSFSVAPDG 449 (1774)
T ss_pred eecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCceeecCCCCcchhhhhh--------cccccccCCC
Confidence 356788888775 444422233444553566678899997 4334444444333 2222211 1234566677
Q ss_pred CE-EEEeCCCCcCcccccccceeecCCc-eEEEEeCCCCe-------EEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 172 SI-YFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNE-------TSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 172 ~i-y~td~~~~~~~~~~~~~~~e~~~~g-~v~~~d~~~~~-------~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
++ ..++..+ .+ .+...++..+. .-.+.++-..+..|+|++| +|||+|+
T Consensus 450 ~vA~L~~~d~----------------q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADs 506 (1774)
T PF11725_consen 450 TVAMLTGKDG----------------QTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADS 506 (1774)
T ss_pred ceeeeecCCC----------------cceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeC
Confidence 65 3443321 11 23333322111 1122345556777888876 5899886
No 247
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=87.35 E-value=19 Score=31.36 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=48.2
Q ss_pred CcceEEEcC-CCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC-ceEEecc
Q 026389 78 GPEDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG-VTVLASH 153 (239)
Q Consensus 78 gPe~ia~d~-~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~~~l~~~ 153 (239)
+=.++-+++ .+.|.+++.||.+..|+.+..-....-..+.|++..+|..+-.+|+.+...-+.++|- .+ ...+...
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC
Confidence 334567776 5688899999999888854322111223456665888877668888877655556663 44 4445443
No 248
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.93 E-value=1.3 Score=24.35 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=19.3
Q ss_pred cCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389 168 ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS 211 (239)
Q Consensus 168 d~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~ 211 (239)
..+|.+|+++.. |.++.+|.++|+..
T Consensus 4 ~~~~~v~~~~~~------------------g~l~a~d~~~G~~~ 29 (33)
T smart00564 4 LSDGTVYVGSTD------------------GTLYALDAKTGEIL 29 (33)
T ss_pred EECCEEEEEcCC------------------CEEEEEEcccCcEE
Confidence 346778887643 89999999877653
No 249
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.81 E-value=6.7 Score=35.79 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=68.2
Q ss_pred eEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeee-------cc-------CcCccCeEEcCCCCEEEEe
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL-------IG-------GDTLLGITTTQENEILVCD 134 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~-------~~-------~~p~~Gl~~d~~G~L~v~d 134 (239)
+.+.-+.-..++++++-.+.++.+|+.+|.|..|+.--+...|.. .. ..-. ++++-+.-+|+.+.
T Consensus 320 qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit-sla~i~~sdL~asG 398 (479)
T KOG0299|consen 320 QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT-SLAVIPGSDLLASG 398 (479)
T ss_pred eeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccccee-eeEecccCceEEec
Confidence 334444345788899988889999999999999874222111111 01 1344 67776766888888
Q ss_pred CCCCeEEEc--cCC---ceEEecccCCccccccccEEEcCCCC-EEEEe
Q 026389 135 ADKGLLKVT--EEG---VTVLASHVNGSRINLADDLIAATDGS-IYFSV 177 (239)
Q Consensus 135 ~~~g~~~v~--~~g---~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td 177 (239)
+..|.+++. .+| ..++.+. .--.+.|.+.+..+|. |+++-
T Consensus 399 S~~G~vrLW~i~~g~r~i~~l~~l---s~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 399 SWSGCVRLWKIEDGLRAINLLYSL---SLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred CCCCceEEEEecCCccccceeeec---ccccEEEEEEEccCCCEEEEec
Confidence 888988887 466 3333221 1124789999999996 65553
No 250
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=86.81 E-value=19 Score=30.91 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=63.2
Q ss_pred CcceEEEcCC-CCEE-EEeCCCeEEEEecC-C-cEE---EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-c
Q 026389 78 GPEDVCVDRN-GVLY-TATRDGWIKRLHKN-G-TWE---NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-V 147 (239)
Q Consensus 78 gPe~ia~d~~-G~ly-~~~~~g~I~~~~~~-G-~~~---~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~ 147 (239)
.--.+||.|. |+++ ++..+..|..++.. + .+. ++.+...+...-+|+.|.|+++++.+....+.+. .++ .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 4556899986 8765 55577777667654 2 221 2222233433378899999988887777777776 355 5
Q ss_pred eEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 148 TVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 148 ~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
+.+.. .+|. -+-.-.++..++|++..|-+.
T Consensus 96 ecv~~-lEGH-EnEVK~Vaws~sG~~LATCSR 125 (312)
T KOG0645|consen 96 ECVAT-LEGH-ENEVKCVAWSASGNYLATCSR 125 (312)
T ss_pred eEEee-eecc-ccceeEEEEcCCCCEEEEeeC
Confidence 54432 3342 133557899999998888765
No 251
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.74 E-value=3.6 Score=36.49 Aligned_cols=63 Identities=13% Similarity=0.277 Sum_probs=45.9
Q ss_pred ceEEEcCCCCEE-EEeCCCeEEEEe--cCCcE-EEeee--ccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 80 EDVCVDRNGVLY-TATRDGWIKRLH--KNGTW-ENWKL--IGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 80 e~ia~d~~G~ly-~~~~~g~I~~~~--~~G~~-~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
..++++++|.+. +++..|+|.|+- ++|+. ..|.. .+-+-. .|+|++++.++.|.+..+.+++.
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~Iy-SL~Fs~ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIY-SLSFSPDSQFLAASSNTETVHIF 245 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEE-EEEECCCCCeEEEecCCCeEEEE
Confidence 358999999988 667899998865 47753 33332 133456 78999999988888887776654
No 252
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.49 E-value=6.9 Score=34.85 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=77.0
Q ss_pred ceEEEcC-CCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC---ceEEe
Q 026389 80 EDVCVDR-NGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG---VTVLA 151 (239)
Q Consensus 80 e~ia~d~-~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g---~~~l~ 151 (239)
.++-+.| .-.|..+. .|+.|+.+|. .++...-.-..-+++ +|+++|++- ..+++....++.+| ..= +.+..
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccchhhc
Confidence 3445555 23455444 7889999985 333221123356899 999999774 55567777888887 221 22221
Q ss_pred cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-Eec-CCCCCcceEEEcCCC
Q 026389 152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL-DSLFFANGVALSKDE 229 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~-~~l~~pnGia~s~dg 229 (239)
+. .+..-|+++.|-|.=++|.+..+ +=|||.++- +..+ +.. .-+.+..+|.+|-|.
T Consensus 270 dh-----vsAV~dVdfsptG~EfvsgsyDk---------------sIRIf~~~~--~~SRdiYhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 270 DH-----VSAVMDVDFSPTGQEFVSGSYDK---------------SIRIFPVNH--GHSRDIYHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred cc-----ceeEEEeccCCCcchhccccccc---------------eEEEeecCC--CcchhhhhHhhhheeeEEEEeccc
Confidence 11 13456889999998888765421 224554443 3222 222 236677889999998
Q ss_pred CEEE
Q 026389 230 DYLV 233 (239)
Q Consensus 230 ~~ly 233 (239)
++++
T Consensus 328 kyi~ 331 (433)
T KOG0268|consen 328 KYII 331 (433)
T ss_pred cEEE
Confidence 8664
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=86.19 E-value=9.1 Score=36.14 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=70.1
Q ss_pred eEEEcC-CCCEEEEeCCCeEEEEecCC-----cEEEeeecc--------CcCccCeEEcCCCCEEEEeCCCCeEEE-c-c
Q 026389 81 DVCVDR-NGVLYTATRDGWIKRLHKNG-----TWENWKLIG--------GDTLLGITTTQENEILVCDADKGLLKV-T-E 144 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~~~g~I~~~~~~G-----~~~~~~~~~--------~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~ 144 (239)
.|.+.+ +|.|-+|..+|.|-.||+-- .+..-.... ..+. .+.|+.+|--+.+....|.+.+ | .
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEcc
Confidence 344455 45556777889998888621 111101111 1244 6778766633333333454444 3 2
Q ss_pred CCceEEe-cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceE
Q 026389 145 EGVTVLA-SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV 223 (239)
Q Consensus 145 ~g~~~l~-~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGi 223 (239)
.....+. +.....++.....+.-+..-.++-.|.. .+-.||+.+|+.-..+....--|.+
T Consensus 259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~-------------------~~kiWd~~~Gk~~asiEpt~~lND~ 319 (703)
T KOG2321|consen 259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR-------------------ILKIWDECTGKPMASIEPTSDLNDF 319 (703)
T ss_pred cCCceeecccCCccceeeecccccCCCceEEecchH-------------------HhhhcccccCCceeeccccCCcCce
Confidence 2222222 2222334444444333222244444432 2334788788777777666677888
Q ss_pred EEcCCCCEEEEEe
Q 026389 224 ALSKDEDYLVVCE 236 (239)
Q Consensus 224 a~s~dg~~lyvad 236 (239)
|+-|++-.++++.
T Consensus 320 C~~p~sGm~f~An 332 (703)
T KOG2321|consen 320 CFVPGSGMFFTAN 332 (703)
T ss_pred eeecCCceEEEec
Confidence 8888877666653
No 254
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=85.60 E-value=29 Score=31.83 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=67.4
Q ss_pred CCEE-EEeCCCeEEEEe-cCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc--CC----ceEEecccCC--c
Q 026389 88 GVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE--EG----VTVLASHVNG--S 157 (239)
Q Consensus 88 G~ly-~~~~~g~I~~~~-~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g----~~~l~~~~~g--~ 157 (239)
++.. ++-.|..+..|+ ++-....+....+.+- .+++- +..-||+.+..|.+.+.. .. ...+++.... .
T Consensus 298 eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sid-cv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~ 375 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSID-CVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD 375 (479)
T ss_pred cceEEeccccceeEEEeccccceeeeeCCCCCee-eEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence 4444 333444333333 3322233444445565 66664 345566666667666542 11 1112221111 1
Q ss_pred ccc---ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcceEEEcCCCCEE
Q 026389 158 RIN---LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYL 232 (239)
Q Consensus 158 ~~~---~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pnGia~s~dg~~l 232 (239)
+.+ +.+.+++-+.-++..+.+. .+.=|||.+...-..+..+. .-..+.|+|+|+.+|+++
T Consensus 376 ~~~~~~Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 376 PVNGNFWITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRI 440 (479)
T ss_pred ccccccceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEE
Confidence 222 5667777766666666543 12346677765433444432 224578999999999988
Q ss_pred EEE
Q 026389 233 VVC 235 (239)
Q Consensus 233 yva 235 (239)
++.
T Consensus 441 vag 443 (479)
T KOG0299|consen 441 VAG 443 (479)
T ss_pred EEe
Confidence 764
No 255
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.35 E-value=4.2 Score=38.32 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCCeEEEc-cCC-ceEEecccCCcccc-------ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCC
Q 026389 127 ENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRIN-------LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197 (239)
Q Consensus 127 ~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~-------~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~ 197 (239)
+|.||+++....++.+| .+| ...-.+........ ...++++. +|+||++...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~d------------------ 129 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLD------------------ 129 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCC------------------
Confidence 67899998877788888 577 33222110000000 11344554 5688887643
Q ss_pred ceEEEEeCCCCeE
Q 026389 198 GKLLKYDPSLNET 210 (239)
Q Consensus 198 g~v~~~d~~~~~~ 210 (239)
|+|+.+|.++|++
T Consensus 130 g~l~ALDa~TGk~ 142 (527)
T TIGR03075 130 ARLVALDAKTGKV 142 (527)
T ss_pred CEEEEEECCCCCE
Confidence 7888888887775
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.06 E-value=34 Score=32.16 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=66.3
Q ss_pred EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEc----CCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCcccccccc
Q 026389 92 TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTT----QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADD 164 (239)
Q Consensus 92 ~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d----~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~ 164 (239)
.|...|.|+-++. .|+++.....+.++. ++... ..|-+|-+++...+..++ ..+ ...... .+. ..+..
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~--~~~--~~~~s 149 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK--EQK--PLVSS 149 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeec--cCC--Cccce
Confidence 3446677777774 456655445455554 44332 334577777766666666 344 222211 121 23568
Q ss_pred EEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCC
Q 026389 165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD 228 (239)
Q Consensus 165 l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~d 228 (239)
+++.+||.+..+.+ +.|-.||..++++..-.++...| +-++|..+
T Consensus 150 l~is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 150 LCISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred EEEcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 99999998877754 46777888777776666665544 44555444
No 257
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=85.02 E-value=19 Score=31.29 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=56.6
Q ss_pred CeEEcCCCCEEEEeCCCCeEEEc--cCC----ceEEe-----cccCCccc-cccccEEEcCC-CCEEEEeCCCCcCcccc
Q 026389 121 GITTTQENEILVCDADKGLLKVT--EEG----VTVLA-----SHVNGSRI-NLADDLIAATD-GSIYFSVASTKFGLHNW 187 (239)
Q Consensus 121 Gl~~d~~G~L~v~d~~~g~~~v~--~~g----~~~l~-----~~~~g~~~-~~pn~l~vd~d-G~iy~td~~~~~~~~~~ 187 (239)
.+++-+++.=|++.+-.|.+.+. .+. .+..+ ....+..+ .-.|.|++.|- |++ +|.
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tf-aTg---------- 250 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTF-ATG---------- 250 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceE-Eec----------
Confidence 45555666677777777777664 111 11110 11122222 23577777775 333 332
Q ss_pred cccceeecCCceEEEEeCCCCeEEEecCCC-CCcceEEEcCCCCEEEEEeCC
Q 026389 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 188 ~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l-~~pnGia~s~dg~~lyvadt~ 238 (239)
+..|-|.+||+.+++.-...... .....++|+.||..|-|+.+.
T Consensus 251 -------GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 251 -------GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred -------CCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 23699999998765433323222 334568899999999888763
No 258
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=84.47 E-value=8.4 Score=33.28 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=18.2
Q ss_pred CCCCCcceEEEcCCCCEEEEEeC
Q 026389 215 DSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 215 ~~l~~pnGia~s~dg~~lyvadt 237 (239)
.++..||.++++.|+.+|.|.+-
T Consensus 168 v~~~~~n~ia~s~dng~vaVg~r 190 (339)
T COG4447 168 VGLAVPNEIARSADNGYVAVGAR 190 (339)
T ss_pred cchhhhhhhhhhccCCeEEEecC
Confidence 34668999999999998877653
No 259
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=84.43 E-value=13 Score=35.75 Aligned_cols=98 Identities=15% Similarity=0.223 Sum_probs=63.2
Q ss_pred eEEEcCCC-CEEEEeCCCeEEEEecCCc---EEEe---eeccCcC---ccCeEEcCCCCEEEEeCCCCeEEEcc--CCce
Q 026389 81 DVCVDRNG-VLYTATRDGWIKRLHKNGT---WENW---KLIGGDT---LLGITTTQENEILVCDADKGLLKVTE--EGVT 148 (239)
Q Consensus 81 ~ia~d~~G-~ly~~~~~g~I~~~~~~G~---~~~~---~~~~~~p---~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g~~ 148 (239)
++.|.|.| .|..++.|..++.|.++-+ |... ...+|.. + |..+.++++.+++..+.|-++... +...
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCEEEEecccCcEEEEeccCccc
Confidence 57788888 6778888999988887544 4322 2233333 3 566779999999999888777653 3311
Q ss_pred EEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 149 VLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
......-+.-+....|++.+|.|..+.|-+.
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~ 381 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSL 381 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEecc
Confidence 1111111112334679999999998887543
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=84.20 E-value=6.1 Score=35.34 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=61.1
Q ss_pred cCcCccCeEEcCCCC-EEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCccccc
Q 026389 115 GGDTLLGITTTQENE-ILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWG 188 (239)
Q Consensus 115 ~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~ 188 (239)
+..+. .....+.|+ |++++..+....++ .+. .+.+ +..... ..++.+.+..+. .+.++|..
T Consensus 62 ~~a~~-~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~-~~~~v~--~~~~ai~~~~~~~sv~v~dka--------- 128 (390)
T KOG3914|consen 62 SLAPA-LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL-DVSCVP--KRPTAISFIREDTSVLVADKA--------- 128 (390)
T ss_pred hcccc-ccccCCCceEEEEEeCCCceEEEEEecCCCcceee-eEeecc--cCcceeeeeeccceEEEEeec---------
Confidence 34454 455556665 56667766654333 221 2222 211111 347778777765 67777754
Q ss_pred ccceeecCCceEEEEeCCC---CeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 189 LDLLEAKPHGKLLKYDPSL---NETSILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 189 ~~~~e~~~~g~v~~~d~~~---~~~~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
|-++.||--. +..+.++..+..-..|++++|++++..+|
T Consensus 129 ---------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD 170 (390)
T KOG3914|consen 129 ---------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD 170 (390)
T ss_pred ---------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec
Confidence 5566665332 56666777778888999999999998876
No 261
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=84.10 E-value=26 Score=30.04 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=39.6
Q ss_pred CcceEEEcC---CCCEE--EEeCCCeEEEEec----CCcEE----EeeeccCcCccCeEEc-CCCCEEEEeCCCCeEEEc
Q 026389 78 GPEDVCVDR---NGVLY--TATRDGWIKRLHK----NGTWE----NWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT 143 (239)
Q Consensus 78 gPe~ia~d~---~G~ly--~~~~~g~I~~~~~----~G~~~----~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~v~ 143 (239)
.+-|++... .|..| +...+|.|..+.. +|++. +-........ ||..| .-|.||++...-+++++.
T Consensus 154 ~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTE-G~VaDdEtG~LYIaeEdvaiWK~~ 232 (364)
T COG4247 154 SAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTE-GMVADDETGFLYIAEEDVAIWKYE 232 (364)
T ss_pred cceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCccc-ceeeccccceEEEeeccceeeecc
Confidence 344555543 35555 3446777766542 34321 1112234566 88887 668999999999999987
No 262
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.88 E-value=17 Score=35.05 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=33.3
Q ss_pred EEcCCCCEEEEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC--ceEEe
Q 026389 83 CVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA 151 (239)
Q Consensus 83 a~d~~G~ly~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g--~~~l~ 151 (239)
....++.+..++.|.++.+|.. |+. ..+......-. .++.-+++ .||+.+....+++..+| .+++.
T Consensus 108 s~~~~~~~iSgSWD~TakvW~~-~~l~~~l~gH~asVW-Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~ 176 (745)
T KOG0301|consen 108 SIGEDGTLISGSWDSTAKVWRI-GELVYSLQGHTASVW-AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFS 176 (745)
T ss_pred ecCCcCceEecccccceEEecc-hhhhcccCCcchhee-eeeecCCC-cEEeccCcceeeeccCCchhhhhc
Confidence 3344556666665555544432 221 11111111223 34444665 88888777888887555 45543
No 263
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.49 E-value=7.3 Score=35.20 Aligned_cols=61 Identities=23% Similarity=0.192 Sum_probs=40.7
Q ss_pred ceEEEcCC-CCEEEEeCCCeEEEEecCCcE----EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEE
Q 026389 80 EDVCVDRN-GVLYTATRDGWIKRLHKNGTW----ENWKLIGGDTLLGITTTQENEILVCDADKGLLK 141 (239)
Q Consensus 80 e~ia~d~~-G~ly~~~~~g~I~~~~~~G~~----~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~ 141 (239)
.++.|-++ +.+.++..|..|..|+..|+. .++....+.-. .+.+|.+|+-.++..+.+-.+
T Consensus 179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it-~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNIT-SIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcc-eeeecCCCceEEeecCCCcee
Confidence 34677765 777788888888888766643 23333334455 899999998877776665333
No 264
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.44 E-value=34 Score=33.54 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=55.1
Q ss_pred CcceEEEcCCCCEEEEeCCCeEEEEecC-Cc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389 78 GPEDVCVDRNGVLYTATRDGWIKRLHKN-GT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLA 151 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~-G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~ 151 (239)
.-.++++..+..+..+-.++.|..|+.+ ++ +.++ +++..+ +..|-+.++.+|.....|-+.+. ..+ ++.+.
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI--TCGYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEe--ccccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 3446777766555554467788888765 33 3332 345666 77776666666666666655543 333 34332
Q ss_pred cccCCccccccccEEEcCCCCEEEEeCC
Q 026389 152 SHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
.-+| ....++..|||.=++|.+.
T Consensus 452 -AHdg----aIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 452 -AHDG----AIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred -cccc----ceeeeeecCCCCceEEecC
Confidence 1122 3567888899877777654
No 265
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=82.93 E-value=14 Score=36.15 Aligned_cols=90 Identities=10% Similarity=0.197 Sum_probs=54.2
Q ss_pred ceEEEcCCC-CEEEEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCC-CCeEEEc-cCC--ceEE---
Q 026389 80 EDVCVDRNG-VLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL--- 150 (239)
Q Consensus 80 e~ia~d~~G-~ly~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-~g~~~v~-~~g--~~~l--- 150 (239)
.+++|..+| .||.|...+-+.+|..+ ++ +.|.+..+.|.+++.+.+|+.+|..-.. +.+..+. .+- ...+
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi 333 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI 333 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence 356777766 67788888888888753 34 5566666667669999999987765433 3333333 221 1111
Q ss_pred ecc---cCCccccccccEEEcCC
Q 026389 151 ASH---VNGSRINLADDLIAATD 170 (239)
Q Consensus 151 ~~~---~~g~~~~~pn~l~vd~d 170 (239)
... ....+-.++.++.+||.
T Consensus 334 ~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 334 KPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred cCCCccccccccccceeEEEcCC
Confidence 111 11123456889999994
No 266
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=82.42 E-value=51 Score=32.11 Aligned_cols=64 Identities=8% Similarity=0.112 Sum_probs=41.6
Q ss_pred CcceEEEcCCCCEEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE
Q 026389 78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKV 142 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v 142 (239)
.-.++++-|||.=.+-..+.+++.+|+ +|. ..++.......+ -++...||+.+.+.+....+-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCCCceeEEE
Confidence 456789999997666667889999997 454 233322223345 6777788888776655444433
No 267
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.26 E-value=34 Score=33.37 Aligned_cols=91 Identities=11% Similarity=0.165 Sum_probs=60.1
Q ss_pred ceEEEcCCCCEEEEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC-ceEEecc
Q 026389 80 EDVCVDRNGVLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG-VTVLASH 153 (239)
Q Consensus 80 e~ia~d~~G~ly~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g-~~~l~~~ 153 (239)
-+|.|..++.|..++.|.+|..|++.- -..+|... ..-. .++|.| |.+-++...-.|-+++. .+. +....+
T Consensus 373 LDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-dfVT-cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D- 449 (712)
T KOG0283|consen 373 LDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-DFVT-CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND- 449 (712)
T ss_pred eecccccCCeeEeccccccEEeecCCCcceeeEEecC-CeeE-EEEecccCCCcEeecccccceEEeecCcCeeEeehh-
Confidence 468899999999999998888887643 24555443 2334 788885 44888887777888876 333 222211
Q ss_pred cCCccccccccEEEcCCCCE-EEEe
Q 026389 154 VNGSRINLADDLIAATDGSI-YFSV 177 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~i-y~td 177 (239)
.. .....+++.|||.. .++.
T Consensus 450 l~----~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 450 LR----DLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred hh----hhheeEEeccCCceEEEEE
Confidence 11 24678899999954 4444
No 268
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.26 E-value=26 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=18.1
Q ss_pred CcCCcceEEEcCCCC-EEEEeCCCeEEEE
Q 026389 75 ILNGPEDVCVDRNGV-LYTATRDGWIKRL 102 (239)
Q Consensus 75 ~~~gPe~ia~d~~G~-ly~~~~~g~I~~~ 102 (239)
.+.+=+||.++++|. .|+-+.+|+--|.
T Consensus 67 p~~G~Sgi~~d~~~~~f~~lSDng~g~K~ 95 (391)
T COG4222 67 PVGGFSGITYDPQGDGYWALSDNGRGSKL 95 (391)
T ss_pred CCCceeeeEEccCCCeEEEEeCCCccccc
Confidence 366778899998775 5555555554443
No 269
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=81.94 E-value=11 Score=35.51 Aligned_cols=65 Identities=14% Similarity=-0.009 Sum_probs=50.2
Q ss_pred CcceEEEcCC-CCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 78 GPEDVCVDRN-GVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 78 gPe~ia~d~~-G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
.+.+.+++++ ..+..|+.||.|..||.+-++..+....-.|. -+++.++|.+++.-..+|-+...
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEE
Confidence 5566777774 56778999999999998666666666667898 99999999877766666766654
No 270
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=81.72 E-value=30 Score=29.03 Aligned_cols=53 Identities=8% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCCCEEEEeCCCCeEEEc--c-CC-ceEEecccCCccc--cccccEEEcCCCCEEEEeC
Q 026389 126 QENEILVCDADKGLLKVT--E-EG-VTVLASHVNGSRI--NLADDLIAATDGSIYFSVA 178 (239)
Q Consensus 126 ~~G~L~v~d~~~g~~~v~--~-~g-~~~l~~~~~g~~~--~~pn~l~vd~dG~iy~td~ 178 (239)
.+|.+++..+....+++. . +- +.++...+.+..+ .....++|||.|++.++..
T Consensus 192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 455566665555555554 1 33 5555444433322 3467899999999999743
No 271
>KOG4328 consensus WD40 protein [Function unknown]
Probab=81.44 E-value=22 Score=32.66 Aligned_cols=134 Identities=12% Similarity=0.081 Sum_probs=70.3
Q ss_pred ceEEEcCCC--C-EEEEeCCCeEEEEecCCc------EEEeeeccCcCccCeEEcCCC--CEEEEeCCCCeEEEc--cCC
Q 026389 80 EDVCVDRNG--V-LYTATRDGWIKRLHKNGT------WENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT--EEG 146 (239)
Q Consensus 80 e~ia~d~~G--~-ly~~~~~g~I~~~~~~G~------~~~~~~~~~~p~~Gl~~d~~G--~L~v~d~~~g~~~v~--~~g 146 (239)
.+++|.|.- . +.+|+..|+|..|+.+++ +..+.. .+.|.++|.|.+.+ ++| +.++.|.++.. +.+
T Consensus 190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~-ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIY-SSSYDGTIRLQDFEGN 267 (498)
T ss_pred EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhhee-eeccCceeeeeeecch
Confidence 457788732 3 447889999999987432 122222 23344389998776 455 44567777764 344
Q ss_pred -ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE--EEecCCCCCcce
Q 026389 147 -VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANG 222 (239)
Q Consensus 147 -~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~--~~~~~~l~~pnG 222 (239)
.+.+...-.. -....++.+..+ +.+||.+.- |.+-.+|..++.. ..+.-.-...++
T Consensus 268 i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~~------------------G~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 268 ISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDNV------------------GNFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred hhHHHhhcCcc--ceeeeeccccCCCccEEEeecc------------------cceEEEEeecCCccchhhhhhhcccce
Confidence 3433322111 112345555544 467776643 4344455443322 222111125677
Q ss_pred EEEcCCCCEEEEE
Q 026389 223 VALSKDEDYLVVC 235 (239)
Q Consensus 223 ia~s~dg~~lyva 235 (239)
|++.|-..+++.+
T Consensus 328 v~~NP~~p~~laT 340 (498)
T KOG4328|consen 328 VALNPVCPWFLAT 340 (498)
T ss_pred eecCCCCchheee
Confidence 8887766655443
No 272
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=81.28 E-value=27 Score=30.83 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=29.9
Q ss_pred CceEEEEeCCCCeEEEecCCCCCcce-EEEcCCCCEEEEEeC
Q 026389 197 HGKLLKYDPSLNETSILLDSLFFANG-VALSKDEDYLVVCET 237 (239)
Q Consensus 197 ~g~v~~~d~~~~~~~~~~~~l~~pnG-ia~s~dg~~lyvadt 237 (239)
..+|+.++.+++..+.+..+-...+. +.++++++.||+.-+
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEec
Confidence 46899999998887766666555545 667899999987654
No 273
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=81.24 E-value=4 Score=40.22 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=45.8
Q ss_pred eEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 81 DVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 81 ~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
++|-+.+|.|.+|+.+|.|..|+..|. .++..+..|.|..||.+..||+-++|....=++.++
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 567778999999999999999997664 233344557777799999999866655444444443
No 274
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=81.20 E-value=2.2 Score=22.14 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.5
Q ss_pred cccccEEEcCCCCEEEEe
Q 026389 160 NLADDLIAATDGSIYFSV 177 (239)
Q Consensus 160 ~~pn~l~vd~dG~iy~td 177 (239)
+....+..|++|+||++.
T Consensus 5 n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SCEEEEEE-TTSCEEEEE
T ss_pred CeEEEEEEcCCcCEEEEe
Confidence 457789999999999975
No 275
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.61 E-value=27 Score=33.36 Aligned_cols=129 Identities=17% Similarity=0.217 Sum_probs=63.7
Q ss_pred CCCEEE-EeCCC-----eEEEEecC-CcEEEeeeccC--cCccCeEEcCCCCEEEEeCCCC------eE-EEcc-CC-ce
Q 026389 87 NGVLYT-ATRDG-----WIKRLHKN-GTWENWKLIGG--DTLLGITTTQENEILVCDADKG------LL-KVTE-EG-VT 148 (239)
Q Consensus 87 ~G~ly~-~~~~g-----~I~~~~~~-G~~~~~~~~~~--~p~~Gl~~d~~G~L~v~d~~~g------~~-~v~~-~g-~~ 148 (239)
+|.||+ |..+| .|-+||+. .+|+....... .-. |++. -+|+||++-...+ .+ ..|+ .+ -+
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~-gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH-GVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeee-EEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 567774 33443 46777764 35554432211 122 4444 5789999865322 12 2343 22 22
Q ss_pred EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC--CCcceEEEc
Q 026389 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALS 226 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l--~~pnGia~s 226 (239)
.+..- .- -+.-.++++. +|.||+--.... ....-.|.+|||.+.+.+.+..-. ...-|++.
T Consensus 458 ~~~~M-~~--~R~~~g~a~~-~~~iYvvGG~~~------------~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~- 520 (571)
T KOG4441|consen 458 LIAPM-NT--RRSGFGVAVL-NGKIYVVGGFDG------------TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV- 520 (571)
T ss_pred ecCCc-cc--ccccceEEEE-CCEEEEECCccC------------CCccceEEEEcCCCCceeEcccCccccccccEEE-
Confidence 22111 11 1122344443 778998754311 001235899999988887774221 12233443
Q ss_pred CCCCEEEEE
Q 026389 227 KDEDYLVVC 235 (239)
Q Consensus 227 ~dg~~lyva 235 (239)
.+..+|+.
T Consensus 521 -~~~~ly~v 528 (571)
T KOG4441|consen 521 -LGGKLYAV 528 (571)
T ss_pred -ECCEEEEE
Confidence 35567775
No 276
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=79.78 E-value=16 Score=34.06 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=36.6
Q ss_pred EEEcCCCCEEEEe-CCCeEEEEecCCcEEEeeeccCcCccC---eEEcCCC-CEEEEeCCCCeEEE
Q 026389 82 VCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLG---ITTTQEN-EILVCDADKGLLKV 142 (239)
Q Consensus 82 ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~~~~~~p~~G---l~~d~~G-~L~v~d~~~g~~~v 142 (239)
+++.+|-++-+++ .+|.|..||..++..+ ....|++- | |.+.+|| +||...- ...++-
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~V-rqfqGhtD-GascIdis~dGtklWTGGl-DntvRc 577 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLV-RQFQGHTD-GASCIDISKDGTKLWTGGL-DNTVRC 577 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceee-ecccCCCC-CceeEEecCCCceeecCCC-ccceee
Confidence 5566777776655 9999999998665432 34446665 5 4556888 5665433 344444
No 277
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=79.67 E-value=24 Score=33.71 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=67.4
Q ss_pred CCCEEEE-eCC------CeEEEEecC-CcEEEeeec--cCcCccCeEEcCCCCEEEEeCCCCe-----E-EEccCC--ce
Q 026389 87 NGVLYTA-TRD------GWIKRLHKN-GTWENWKLI--GGDTLLGITTTQENEILVCDADKGL-----L-KVTEEG--VT 148 (239)
Q Consensus 87 ~G~ly~~-~~~------g~I~~~~~~-G~~~~~~~~--~~~p~~Gl~~d~~G~L~v~d~~~g~-----~-~v~~~g--~~ 148 (239)
+|.||+. ..+ ..+.+||+. ++|...... ...-. |++. -+|.||+.-...|. + +.|+.. -+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCccc
Confidence 5688954 344 467889874 456554321 22234 6665 47899998654332 2 233322 22
Q ss_pred EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC--CCcceEEEc
Q 026389 149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALS 226 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l--~~pnGia~s 226 (239)
.+..-.. .++--+++ .-+|.||+....... . ..-..+.+|||.+++-+.+..-- ..-.|++.-
T Consensus 410 ~va~m~~---~r~~~gv~-~~~g~iYi~GG~~~~--~---------~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 410 PVAPMLT---RRSGHGVA-VLGGKLYIIGGGDGS--S---------NCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred ccCCCCc---ceeeeEEE-EECCEEEEEcCcCCC--c---------cccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence 2221111 11112222 337899998654211 0 01367999999988876665321 222445543
Q ss_pred CCCCEEEEE
Q 026389 227 KDEDYLVVC 235 (239)
Q Consensus 227 ~dg~~lyva 235 (239)
+..||+.
T Consensus 475 --~~~iYvv 481 (571)
T KOG4441|consen 475 --NGKIYVV 481 (571)
T ss_pred --CCEEEEE
Confidence 3357764
No 278
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=78.62 E-value=39 Score=28.45 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=72.9
Q ss_pred cCCcceEEEcCCCCEEEEeCCCeE---EEEecCCcEEE--eeec--cCcCccCeEEcCCC-CE-EEE-eCCCCeEEEc--
Q 026389 76 LNGPEDVCVDRNGVLYTATRDGWI---KRLHKNGTWEN--WKLI--GGDTLLGITTTQEN-EI-LVC-DADKGLLKVT-- 143 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~~~g~I---~~~~~~G~~~~--~~~~--~~~p~~Gl~~d~~G-~L-~v~-d~~~g~~~v~-- 143 (239)
+..| .||++|.+|+....... .+...+|+... ..-. .++.. .+++.+|| |+ +|. +...+.+.+.
T Consensus 68 l~~P---S~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~-~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 68 LTRP---SWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRIT-ALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred cccc---cccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceE-EEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 5566 89999999977633322 22223443321 1111 12445 88999999 43 333 3333444332
Q ss_pred ---cCC-ceEEecccC-C-ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEE-EeCCCCeEEEecCC
Q 026389 144 ---EEG-VTVLASHVN-G-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK-YDPSLNETSILLDS 216 (239)
Q Consensus 144 ---~~g-~~~l~~~~~-g-~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~-~d~~~~~~~~~~~~ 216 (239)
.+| ...+..... . .......+++..++++|.+..... .+.+.. +..+++..+.+...
T Consensus 144 ~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~----------------~~~~~~~v~~dG~~~~~l~~~ 207 (253)
T PF10647_consen 144 VRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA----------------GGPVVRLVSVDGGPSTPLPSV 207 (253)
T ss_pred EeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC----------------CCceeEEEEccCCcccccCCC
Confidence 344 333322111 1 123456788999999887765441 223333 55555555444333
Q ss_pred CCCcceEEEcCCCCEEEEEeC
Q 026389 217 LFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 217 l~~pnGia~s~dg~~lyvadt 237 (239)
...+--++...+...+|+++.
T Consensus 208 ~~~~~v~a~~~~~~~~~~t~~ 228 (253)
T PF10647_consen 208 NLGVPVVAVAASPSTVYVTDD 228 (253)
T ss_pred CCCcceEEeeCCCcEEEEECC
Confidence 333444555555556666654
No 279
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=78.54 E-value=13 Score=34.84 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=57.1
Q ss_pred CcceEEEcCCCCEE-EEeCCCeEEEEecCCc-EE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceEEec
Q 026389 78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNGT-WE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVLAS 152 (239)
Q Consensus 78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~-~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~l~~ 152 (239)
.+..+++.+||... +.+.||.+..++-+-+ +. .+..-.+.-+ -+.+.+||+.+|+.....++.|. .++ ++++-
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-CvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVAR 369 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-CVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVAR 369 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-EEEEcCCccEEEecCCcceEEEEEeccc-eEEEe
Confidence 78889999999766 5568997777765432 11 1111223444 78889999999998888898887 333 33321
Q ss_pred ccCCccccccccEEEcC
Q 026389 153 HVNGSRINLADDLIAAT 169 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~ 169 (239)
-.|.. .+.+++++||
T Consensus 370 -GqGHk-SWVs~VaFDp 384 (636)
T KOG2394|consen 370 -GQGHK-SWVSVVAFDP 384 (636)
T ss_pred -ccccc-cceeeEeecc
Confidence 12221 4678888885
No 280
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=77.48 E-value=19 Score=32.64 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=58.1
Q ss_pred CcceEEEcCCCCEE-EEeCCCeEEEEecC-CcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389 78 GPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL 150 (239)
Q Consensus 78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l 150 (239)
.-.+++++++..-| +++.||+|..||.- .+-+ .+...+-.+. .+.+.+.-.|+++-+...++++. ..| +..+
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence 45578999877666 45588999888842 2221 2222333455 66777776677776666788875 355 2222
Q ss_pred ecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 151 ASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
... . +..-++.+.++|+...|-+.
T Consensus 261 h~H--K---ntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 261 HGH--K---NTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred hhc--c---ceEEEEEEcCCCCeeEEccC
Confidence 111 1 23567888888877777554
No 281
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=76.51 E-value=4.1 Score=37.34 Aligned_cols=115 Identities=16% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c-cCC--ceEEecccCCccccccccEEEcCCC
Q 026389 96 DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG--VTVLASHVNGSRINLADDLIAATDG 171 (239)
Q Consensus 96 ~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG 171 (239)
...++.||.+|.--.-.....+.. -|.|-+-.-|+++....|.+.. | ..| +..+.. + ....+-+...|-.
T Consensus 190 K~y~yvYD~~GtElHClk~~~~v~-rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~--~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 190 KKYVYVYDNNGTELHCLKRHIRVA-RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---G--AGRTDVMKQNPYN 263 (545)
T ss_pred hceEEEecCCCcEEeehhhcCchh-hhcccchhheeeecccCCceEEEeechhhhhHHHHc---c--CCccchhhcCCcc
Confidence 356666666553211122233444 5556566666776666666654 3 334 222211 1 0112223333332
Q ss_pred CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-EecCCCCCcceEEEcCCCCEEE
Q 026389 172 SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLV 233 (239)
Q Consensus 172 ~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~~~l~~pnGia~s~dg~~ly 233 (239)
.|.-+ +..+|.|..|.|.+.+.- .++....--++||++++|+++.
T Consensus 264 aVih~-----------------GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMa 309 (545)
T KOG1272|consen 264 AVIHL-----------------GHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMA 309 (545)
T ss_pred ceEEE-----------------cCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEe
Confidence 22222 223688888988765532 2233334458999999999653
No 282
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=76.29 E-value=48 Score=31.56 Aligned_cols=114 Identities=19% Similarity=0.338 Sum_probs=65.3
Q ss_pred eEEEcC-CCCEEEEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CC--ceEEe--
Q 026389 81 DVCVDR-NGVLYTATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EG--VTVLA-- 151 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g--~~~l~-- 151 (239)
+++.+. .-.||++.....|+|++. .|.+ ..+....+.-+ -+.+.+-..|++|....|.+.+. + +. +..|-
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 455553 456787777788999986 3553 23333334445 56666667788888778888875 2 32 33321
Q ss_pred cc----cCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389 152 SH----VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (239)
Q Consensus 152 ~~----~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~ 213 (239)
.. ..+.....+..+.+..|| .+-++.+ .|.+|.||..+.+.-.+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------------------~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------------------TGSVLIYDLRASKPLLV 265 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeecc------------------CCcEEEEEcccCCceee
Confidence 11 112233345666666666 4444433 47788888765554333
No 283
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=75.73 E-value=3.6 Score=23.94 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=17.4
Q ss_pred EEEcCCCCEEEEeCCCeEEEEec
Q 026389 82 VCVDRNGVLYTATRDGWIKRLHK 104 (239)
Q Consensus 82 ia~d~~G~ly~~~~~g~I~~~~~ 104 (239)
++++ +|.+|+++.+|+++.+|.
T Consensus 17 ~~v~-~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 17 PAVA-GGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -EEC-TSEEEEE-TTSEEEEEET
T ss_pred CEEE-CCEEEEEcCCCEEEEEeC
Confidence 3665 789999999999999986
No 284
>PHA02713 hypothetical protein; Provisional
Probab=75.28 E-value=61 Score=30.78 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=29.5
Q ss_pred EcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEecCCCCCc---ceEEEcCCCCEEEEE
Q 026389 167 AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFA---NGVALSKDEDYLVVC 235 (239)
Q Consensus 167 vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~~~~l~~p---nGia~s~dg~~lyva 235 (239)
+.-+|.||+....... . .-...+.+|||.+ .+-+.+. .+..+ .|++.- +| .||+.
T Consensus 460 ~~~~~~IYv~GG~~~~--~---------~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~-~~-~iyv~ 518 (557)
T PHA02713 460 VSHKDDIYVVCDIKDE--K---------NVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILH-DN-TIMML 518 (557)
T ss_pred EEECCEEEEEeCCCCC--C---------ccceeEEEecCCCCCCeeEcc-ccCcccccceeEEE-CC-EEEEE
Confidence 3446899987543100 0 0013578999997 5666543 33322 444443 33 57774
No 285
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.11 E-value=62 Score=28.99 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=71.9
Q ss_pred cceEEEcCCCC-EEEEeCCCeEEEEecCCc--EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389 79 PEDVCVDRNGV-LYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLA 151 (239)
Q Consensus 79 Pe~ia~d~~G~-ly~~~~~g~I~~~~~~G~--~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~ 151 (239)
-..+++-|.|. |...+.|..|..|+.+.. +.++......-. -+++..||.|+.+-+....+++. .++ ..++.
T Consensus 196 vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr-~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 196 VSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR-MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred eeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE-EEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 34566777664 334558888988876432 333332222333 46677899998887766666665 233 22221
Q ss_pred ccc---CC---cccc-ccc--cEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-EecCCCCCcc
Q 026389 152 SHV---NG---SRIN-LAD--DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFAN 221 (239)
Q Consensus 152 ~~~---~g---~~~~-~pn--~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~~~l~~pn 221 (239)
... +- .++. +|+ +-.=..+|.=|.+.. .-.+.+-.+|..++..- .+........
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~----------------SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG----------------SRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEee----------------cccceEEEEeccCCeEEEEEecccceee
Confidence 100 00 0000 111 101111121122221 12456667888777643 3334456678
Q ss_pred eEEEcCCCCEEEE
Q 026389 222 GVALSKDEDYLVV 234 (239)
Q Consensus 222 Gia~s~dg~~lyv 234 (239)
|++|+|.|++|+-
T Consensus 339 ~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 339 GVAFSPGGKYILS 351 (406)
T ss_pred eeEEcCCCeEEEE
Confidence 9999999998763
No 286
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=74.47 E-value=65 Score=28.93 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=53.2
Q ss_pred cceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeee-ccCcCccCeEEcCCC-CEEEEeCCCCeEEE-c-cCCceEEec
Q 026389 79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKL-IGGDTLLGITTTQEN-EILVCDADKGLLKV-T-EEGVTVLAS 152 (239)
Q Consensus 79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~-~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v-~-~~g~~~l~~ 152 (239)
-.++++||....+ +++.|+.|..||. .|+...-.. ....-. |+++.+.. .||-|.. .+.++- | +.. +++.
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~ge-dk~VKCwDLe~n-kvIR- 229 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGE-DKQVKCWDLEYN-KVIR- 229 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecC-CCeeEEEechhh-hhHH-
Confidence 4578999865444 5668888988885 566543222 223344 88887554 3444443 344443 3 221 2221
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCC
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
.+.| -+.....+++.|--++.+|.+.
T Consensus 230 ~YhG-HlS~V~~L~lhPTldvl~t~gr 255 (460)
T KOG0285|consen 230 HYHG-HLSGVYCLDLHPTLDVLVTGGR 255 (460)
T ss_pred Hhcc-ccceeEEEeccccceeEEecCC
Confidence 1222 2334566777777777777654
No 287
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=74.41 E-value=7.8 Score=21.75 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=21.3
Q ss_pred cCCcceEEEcCCCCEE-EEeCCCeEEEEe
Q 026389 76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH 103 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~ 103 (239)
-..-.++++.+++..+ +++.|+.|..||
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3566789999987655 666899998775
No 288
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.23 E-value=5.8 Score=22.85 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=11.4
Q ss_pred CceEEEEeCCCCeE
Q 026389 197 HGKLLKYDPSLNET 210 (239)
Q Consensus 197 ~g~v~~~d~~~~~~ 210 (239)
.|.|+.+|.++|++
T Consensus 9 ~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 9 DGYLYALDAKTGKV 22 (38)
T ss_dssp TSEEEEEETTTTSE
T ss_pred CCEEEEEECCCCCE
Confidence 58888888888875
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=74.05 E-value=58 Score=28.15 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=24.1
Q ss_pred ceEEEEeCCCCeE-EE--ecCCC------CCcceEEEcCCCCEEEEEe
Q 026389 198 GKLLKYDPSLNET-SI--LLDSL------FFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 198 g~v~~~d~~~~~~-~~--~~~~l------~~pnGia~s~dg~~lyvad 236 (239)
+++..+|..++.- ++ +.++. ..-.|-+|+.+++.+||+.
T Consensus 274 s~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 274 SRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 6777777765432 22 12222 3356888998988888864
No 290
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.23 E-value=23 Score=31.96 Aligned_cols=60 Identities=22% Similarity=0.118 Sum_probs=32.4
Q ss_pred cccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC-CCcceEEEcCCCCEEEE
Q 026389 160 NLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVV 234 (239)
Q Consensus 160 ~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l-~~pnGia~s~dg~~lyv 234 (239)
.+.+.=.+.+|| .++|+... .++..+|.+|.++++++.+-++- ....|..++++.+.+|.
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred eeecCCCcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 345555667888 56664332 13568999999999999887653 33458888998888753
No 291
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.96 E-value=17 Score=35.99 Aligned_cols=21 Identities=10% Similarity=0.455 Sum_probs=17.5
Q ss_pred CCCEEEEeCCCCeEEEc-cCCc
Q 026389 127 ENEILVCDADKGLLKVT-EEGV 147 (239)
Q Consensus 127 ~G~L~v~d~~~g~~~v~-~~g~ 147 (239)
+|.||+|+....++.+| .+|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk 215 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGK 215 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCc
Confidence 67999999888888999 5773
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=72.84 E-value=39 Score=31.98 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=58.3
Q ss_pred CeEEcCCCCEEE---EeCCCCeEEEc---cCC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCccccccccee
Q 026389 121 GITTTQENEILV---CDADKGLLKVT---EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE 193 (239)
Q Consensus 121 Gl~~d~~G~L~v---~d~~~g~~~v~---~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e 193 (239)
..+++|.|+=++ +......+.+. .++ .--++..++. .++|.+-.+|.|+..+.-.-.
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~------------- 513 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALV------------- 513 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEec-------------
Confidence 566678885333 33333444443 233 2223333333 578999999999866654321
Q ss_pred ecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCCEEEEEeC
Q 026389 194 AKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 194 ~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~~lyvadt 237 (239)
+..|.+.-||.+-....... ......+.+.++|-|+++..+-|
T Consensus 514 -s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 514 -SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred -ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 12578889998632332222 23445688999999998765543
No 293
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=72.80 E-value=84 Score=29.49 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=53.5
Q ss_pred eEEcCCC-CEEEEeCCCCeEEEc-cCCceEEe--cccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecC
Q 026389 122 ITTTQEN-EILVCDADKGLLKVT-EEGVTVLA--SHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKP 196 (239)
Q Consensus 122 l~~d~~G-~L~v~d~~~g~~~v~-~~g~~~l~--~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~ 196 (239)
+.+.+.. .|++...++|.+.+. -+|...+. ......| ..||++.|.. .|+++-..
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP---~~gicfspsne~l~vsVG~----------------- 229 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP---CRGICFSPSNEALLVSVGY----------------- 229 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC---cCcceecCCccceEEEecc-----------------
Confidence 3344444 366666678888876 36622221 1222222 5789999975 66666543
Q ss_pred CceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEE
Q 026389 197 HGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVV 234 (239)
Q Consensus 197 ~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyv 234 (239)
..+|+.||..++....-+. ...| ..++|+++|.+|..
T Consensus 230 Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred cceEEEeecccccccceee-ecCCcceeeecCCceEEEe
Confidence 4689999986554322221 1122 56899999876644
No 294
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=72.58 E-value=4.2 Score=37.91 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=35.2
Q ss_pred ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCCCCEEEE
Q 026389 161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVV 234 (239)
Q Consensus 161 ~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~dg~~lyv 234 (239)
.+|..++.+||....+-+. .|-|-.||-++.++.-+... +..---+++||||+++.+
T Consensus 292 ~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred cccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence 5789999999976666554 34444455444554333321 222345889999997654
No 295
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=71.92 E-value=45 Score=30.76 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=41.1
Q ss_pred CEEEEe-CCCeEEEEec--CCcEE--Eeeec--------------------cCcCccCeEEcCCCC-EEEEeCCCCeEEE
Q 026389 89 VLYTAT-RDGWIKRLHK--NGTWE--NWKLI--------------------GGDTLLGITTTQENE-ILVCDADKGLLKV 142 (239)
Q Consensus 89 ~ly~~~-~~g~I~~~~~--~G~~~--~~~~~--------------------~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v 142 (239)
.=|+++ -...|++|-. +|+|. ...+. .+-+. .|.+.-|++ |||+....|-++.
T Consensus 260 ~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit-DI~iSlDDrfLYvs~W~~Gdvrq 338 (461)
T PF05694_consen 260 YGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT-DILISLDDRFLYVSNWLHGDVRQ 338 (461)
T ss_dssp EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-------EEE-TTS-EEEEEETTTTEEEE
T ss_pred ceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE-eEEEccCCCEEEEEcccCCcEEE
Confidence 345665 5678888764 56542 22111 12234 566666774 9999999887754
Q ss_pred -c-cCC--ceEEec-------------ccCCccc-cccccEEEcCCC-CEEEEeCC
Q 026389 143 -T-EEG--VTVLAS-------------HVNGSRI-NLADDLIAATDG-SIYFSVAS 179 (239)
Q Consensus 143 -~-~~g--~~~l~~-------------~~~g~~~-~~pn~l~vd~dG-~iy~td~~ 179 (239)
| .|- .++... ...|.++ ..|+=+.++-|| |+|||.+-
T Consensus 339 YDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 339 YDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp EE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE---
T ss_pred EecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeec
Confidence 4 332 222211 1123233 247888999999 89999876
No 296
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=71.90 E-value=44 Score=29.96 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=35.5
Q ss_pred EEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE--EEecCCCCCcc---eEEEcCCCCEEEEEe
Q 026389 165 LIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFAN---GVALSKDEDYLVVCE 236 (239)
Q Consensus 165 l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~--~~~~~~l~~pn---Gia~s~dg~~lyvad 236 (239)
+...+||+ +|.+......... +..-.-+|+++...+... ..+...-..+. ++..++|+++|++.-
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~-------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTS-------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS--------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred EEEeCCCCEEEEEEeCcccccc-------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence 88899984 5566543110000 001134788888766543 24444333333 788999999998754
No 297
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.53 E-value=7.8 Score=22.15 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=11.3
Q ss_pred cceEEEcCCCCEEEEE
Q 026389 220 ANGVALSKDEDYLVVC 235 (239)
Q Consensus 220 pnGia~s~dg~~lyva 235 (239)
-...++||||++|+++
T Consensus 11 ~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFT 26 (39)
T ss_dssp EEEEEE-TTSSEEEEE
T ss_pred ccCEEEecCCCEEEEE
Confidence 3457899999988765
No 298
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=71.21 E-value=76 Score=28.26 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCeEEEecCCCCC-c-ceEEEcCCCCEEEEE
Q 026389 198 GKLLKYDPSLNETSILLDSLFF-A-NGVALSKDEDYLVVC 235 (239)
Q Consensus 198 g~v~~~d~~~~~~~~~~~~l~~-p-nGia~s~dg~~lyva 235 (239)
..|++||+.+.+-+.+.. +.. + .+.++..-++.|||.
T Consensus 189 ~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~~~~~iYv~ 227 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVIKGNKLWLI 227 (376)
T ss_pred ceEEEEECCCCeeeECCc-CCCCCCCcceEEEECCEEEEE
Confidence 579999999887766542 332 2 233333334457764
No 299
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=71.13 E-value=13 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=20.5
Q ss_pred CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (239)
Q Consensus 170 dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~ 213 (239)
||++|.+-.... ....|.|+|++++++. +++
T Consensus 1 dg~lYGTT~~GG------------~~~~GTvf~~~~~g~~-t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGGG------------ASGFGTLYRLSTAGGT-TVL 31 (34)
T ss_pred CCcEEEEcccCC------------CCCceeEEEEcCCCCe-EEE
Confidence 578898875311 1236899999998554 544
No 300
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=71.12 E-value=62 Score=27.40 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=11.4
Q ss_pred cEEEcCCCCEEEE
Q 026389 164 DLIAATDGSIYFS 176 (239)
Q Consensus 164 ~l~vd~dG~iy~t 176 (239)
.+.|++||.|++.
T Consensus 132 ~i~I~~dG~I~~~ 144 (252)
T PRK12641 132 NLKISSNGVITSI 144 (252)
T ss_pred cEEECCCceEEEE
Confidence 7999999999765
No 301
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=69.86 E-value=21 Score=22.79 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.4
Q ss_pred cccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 162 pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
..++++.+||+|+++-.....+ ......|.||+++ |.+
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~----------~~~~~~l~Rln~D-GsL 40 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSS----------GNNDFVLARLNAD-GSL 40 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCC----------CcccEEEEEECCC-CCc
Confidence 4689999999999886542110 1123578999997 544
No 302
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=68.55 E-value=26 Score=30.77 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=50.6
Q ss_pred EEcC-CCCEEEEeCCCCeEEEccCCceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceE
Q 026389 123 TTTQ-ENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL 200 (239)
Q Consensus 123 ~~d~-~G~L~v~d~~~g~~~v~~~g~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v 200 (239)
++++ +++|++++-+.--+.+-.+|.-+..+...-..|+.|.-+++-|.| .-|.+|.. ..+..
T Consensus 175 ~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p----------------~~ad~ 238 (330)
T KOG1379|consen 175 ALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVP----------------DSADV 238 (330)
T ss_pred eeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccCCc----------------cccce
Confidence 3443 778999876543333334553333344444578999999999988 45555543 24678
Q ss_pred EEEeCCCCeEEEecCC
Q 026389 201 LKYDPSLNETSILLDS 216 (239)
Q Consensus 201 ~~~d~~~~~~~~~~~~ 216 (239)
+.++...|.+.+++++
T Consensus 239 ~~~~v~~GDvIilATD 254 (330)
T KOG1379|consen 239 TSFDVQKGDVIILATD 254 (330)
T ss_pred EEEeccCCCEEEEecc
Confidence 8888888888777654
No 303
>PRK13613 lipoprotein LpqB; Provisional
Probab=68.51 E-value=1.2e+02 Score=29.33 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=71.4
Q ss_pred cCCcceEEEcCCCCEEEEeC--C-CeEEEE-ecCCcEEEee--eccC-cCccCeEEcCCC-CE-EEEeC-CCCeEEE---
Q 026389 76 LNGPEDVCVDRNGVLYTATR--D-GWIKRL-HKNGTWENWK--LIGG-DTLLGITTTQEN-EI-LVCDA-DKGLLKV--- 142 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~~--~-g~I~~~-~~~G~~~~~~--~~~~-~p~~Gl~~d~~G-~L-~v~d~-~~g~~~v--- 142 (239)
+..| .||.+|.+|+.+. + .+++++ ..+|+...+. ...+ ... .+++.+|| |+ +|.+. +.+.+.+
T Consensus 411 Lt~P---S~d~~g~vWtvd~~~~~~~vl~v~~~~G~~~~V~~~~l~g~~I~-~lrvSrDG~RvAvv~~~~g~~~v~va~V 486 (599)
T PRK13613 411 LTSP---SWDGRGDLWVVDRDPADPRLLWLLQGDGEPVEVRTPELDGHRVV-AVRVARDGVRVALIVEKDGRRSLQIGRI 486 (599)
T ss_pred ccCC---cCcCCCCEEEecCCCCCceEEEEEcCCCcEEEeeccccCCCEeE-EEEECCCccEEEEEEecCCCcEEEEEEE
Confidence 4555 7888899998763 2 345554 4566653221 1223 344 78899999 53 33432 2333322
Q ss_pred --ccCCceEEecc-cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCC
Q 026389 143 --TEEGVTVLASH-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLF 218 (239)
Q Consensus 143 --~~~g~~~l~~~-~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~ 218 (239)
+.+|...|... .-+..+..+.+++...++.|.+.-.+. ...-.++++..++....... ..+.
T Consensus 487 ~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~--------------~~~~~v~~v~vdG~~~~~~~~~~v~ 552 (599)
T PRK13613 487 VRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREE--------------GGVQQARYVQVDGSTPPASAPAAVT 552 (599)
T ss_pred EeCCCCcEEeeccEEeccCCCccceeEEcCCCEEEEEeccC--------------CCCcceEEEecCCcCcccccccCCC
Confidence 23453222211 111223346788888888887732110 01235677766644332111 2233
Q ss_pred CcceEEEcCCCCEEEEE
Q 026389 219 FANGVALSKDEDYLVVC 235 (239)
Q Consensus 219 ~pnGia~s~dg~~lyva 235 (239)
....|+.+.+.+.+|++
T Consensus 553 ~~~~ia~~~~~~~~~v~ 569 (599)
T PRK13613 553 GVESITASEDERLPLVA 569 (599)
T ss_pred CeeEEEecCCCCceEEE
Confidence 34445666555545554
No 304
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=68.26 E-value=96 Score=28.31 Aligned_cols=135 Identities=10% Similarity=-0.006 Sum_probs=69.4
Q ss_pred cceEEEcC--CCCEEEEeCCCeEEEEecCCc------E---EEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEE-c-c
Q 026389 79 PEDVCVDR--NGVLYTATRDGWIKRLHKNGT------W---ENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKV-T-E 144 (239)
Q Consensus 79 Pe~ia~d~--~G~ly~~~~~g~I~~~~~~G~------~---~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v-~-~ 144 (239)
-.|+.|.+ .|++..++.+++|..||.++. . ..+......-. .+++..-. .||.+-...+.+.+ | .
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcC
Confidence 34578886 578888889999988885321 1 11111112223 44444222 45544444444443 2 2
Q ss_pred CC---ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe--EEEecCCCC
Q 026389 145 EG---VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLF 218 (239)
Q Consensus 145 ~g---~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~--~~~~~~~l~ 218 (239)
.+ ....... .+ .-.|-+++.|-+ .|..|.+. .++|..||+..-. +..+...-.
T Consensus 259 ~~~~~~~~~~~a-h~---~~vn~~~fnp~~~~ilAT~S~-----------------D~tV~LwDlRnL~~~lh~~e~H~d 317 (422)
T KOG0264|consen 259 SNTSKPSHSVKA-HS---AEVNCVAFNPFNEFILATGSA-----------------DKTVALWDLRNLNKPLHTFEGHED 317 (422)
T ss_pred CCCCCCcccccc-cC---CceeEEEeCCCCCceEEeccC-----------------CCcEEEeechhcccCceeccCCCc
Confidence 11 1111111 11 124678888864 56666554 5788888875322 222222223
Q ss_pred CcceEEEcCCCCEEEEE
Q 026389 219 FANGVALSKDEDYLVVC 235 (239)
Q Consensus 219 ~pnGia~s~dg~~lyva 235 (239)
.-..|.+||....++.+
T Consensus 318 ev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 318 EVFQVEWSPHNETVLAS 334 (422)
T ss_pred ceEEEEeCCCCCceeEe
Confidence 34668888877776543
No 305
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.07 E-value=94 Score=28.10 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=29.8
Q ss_pred eecCCceEEEEeCCCCeEEEec--CCCCCc-ceEEEcCCCCEEEEEeCC
Q 026389 193 EAKPHGKLLKYDPSLNETSILL--DSLFFA-NGVALSKDEDYLVVCETF 238 (239)
Q Consensus 193 e~~~~g~v~~~d~~~~~~~~~~--~~l~~p-nGia~s~dg~~lyvadt~ 238 (239)
+....+.|-.||+..+. +.++ +-..+| ..+++.|+|+++|++++.
T Consensus 221 t~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~ 268 (412)
T KOG3881|consen 221 TITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK 268 (412)
T ss_pred EEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc
Confidence 33445789999997443 3332 222222 567889999999999874
No 306
>smart00284 OLF Olfactomedin-like domains.
Probab=67.84 E-value=77 Score=27.01 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=32.1
Q ss_pred eEEEcCCC--CEEEEe-CCCeEE--EEecCC-cE-EEeeeccCc-CccCeEEcCCCCEEEEeC
Q 026389 81 DVCVDRNG--VLYTAT-RDGWIK--RLHKNG-TW-ENWKLIGGD-TLLGITTTQENEILVCDA 135 (239)
Q Consensus 81 ~ia~d~~G--~ly~~~-~~g~I~--~~~~~G-~~-~~~~~~~~~-p~~Gl~~d~~G~L~v~d~ 135 (239)
++|+|++| -||.+. ..|.|. +++++. ++ ++|.....+ .. |=+|--=|.||++++
T Consensus 132 DlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa-~naFmvCGvLY~~~s 193 (255)
T smart00284 132 DLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSA-SNAFMICGILYVTRS 193 (255)
T ss_pred EEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccc-cccEEEeeEEEEEcc
Confidence 68899888 356554 457665 777632 22 345433322 23 445555589999985
No 307
>smart00284 OLF Olfactomedin-like domains.
Probab=67.75 E-value=77 Score=26.99 Aligned_cols=141 Identities=15% Similarity=0.226 Sum_probs=73.9
Q ss_pred cCCcceEEEcCCCCEEEEe-CCCeEEEEecCCc-EEEeeec--------------cCcCccCeEEcCCCC--EEEEeCCC
Q 026389 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGT-WENWKLI--------------GGDTLLGITTTQENE--ILVCDADK 137 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~-~~~~~~~--------------~~~p~~Gl~~d~~G~--L~v~d~~~ 137 (239)
..|...++. +|.+|.-- ....|.|+|...+ +...... +..-. .+++|.+|. ||.+....
T Consensus 74 ~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 74 GQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDENGLWVIYATEQNA 150 (255)
T ss_pred cccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCCceEEEEeccCCC
Confidence 455655665 48888644 4578999996443 3211111 11123 688888773 55565555
Q ss_pred CeEEE---ccCCceE---EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceE-EEEeCCCCeE
Q 026389 138 GLLKV---TEEGVTV---LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKL-LKYDPSLNET 210 (239)
Q Consensus 138 g~~~v---~~~g~~~---l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v-~~~d~~~~~~ 210 (239)
|.+.+ ++.-.++ .-...... ..-|...+ =|.||++++... ...+| |.||..+++-
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~~~k~--sa~naFmv--CGvLY~~~s~~~--------------~~~~I~yayDt~t~~~ 212 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITTYNKR--SASNAFMI--CGILYVTRSLGS--------------KGEKVFYAYDTNTGKE 212 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcCCCcc--cccccEEE--eeEEEEEccCCC--------------CCcEEEEEEECCCCcc
Confidence 65444 4333222 22222111 11222222 389999986311 12344 6799877654
Q ss_pred EEecCCC----CCcceEEEcCCCCEEEEEeC
Q 026389 211 SILLDSL----FFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 211 ~~~~~~l----~~pnGia~s~dg~~lyvadt 237 (239)
..+.-.+ ..-..|...|-.+.||+=|-
T Consensus 213 ~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdn 243 (255)
T smart00284 213 GHLDIPFENMYEYISMLDYNPNDRKLYAWNN 243 (255)
T ss_pred ceeeeeeccccccceeceeCCCCCeEEEEeC
Confidence 3321112 22345778888888987654
No 308
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=67.44 E-value=87 Score=27.51 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=52.1
Q ss_pred eEEEcCCCCEEEEeCCCeEEEEecCCc----EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-c-eEEeccc
Q 026389 81 DVCVDRNGVLYTATRDGWIKRLHKNGT----WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-V-TVLASHV 154 (239)
Q Consensus 81 ~ia~d~~G~ly~~~~~g~I~~~~~~G~----~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~-~~l~~~~ 154 (239)
+++++ ...-|++..++.+..+|.... .......++..+ ++.+ .+++.|+++-..|++-++.++ . .++....
T Consensus 176 ~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~-sv~v-sdnr~y~vvy~egvlivd~s~~ssp~~~gsy 252 (370)
T COG5276 176 DVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTY-SVSV-SDNRAYLVVYDEGVLIVDVSGPSSPTVFGSY 252 (370)
T ss_pred eEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceE-EEEe-cCCeeEEEEcccceEEEecCCCCCceEeecc
Confidence 34443 335677777777777764321 111123333445 5555 467899999999999999766 2 2333333
Q ss_pred CCccccccccEEEcCCCCEEEEeCC
Q 026389 155 NGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 155 ~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
+........++.| ++...|+.|..
T Consensus 253 et~~p~~~s~v~V-s~~~~Yvadga 276 (370)
T COG5276 253 ETSNPVSISTVPV-SGEYAYVADGA 276 (370)
T ss_pred ccCCcccccceec-ccceeeeeccc
Confidence 3322111122233 34478998865
No 309
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.17 E-value=99 Score=29.89 Aligned_cols=63 Identities=5% Similarity=0.137 Sum_probs=36.5
Q ss_pred eEEEcCCCCEEEEe-CCCeEEEEecC-C-cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc
Q 026389 81 DVCVDRNGVLYTAT-RDGWIKRLHKN-G-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE 144 (239)
Q Consensus 81 ~ia~d~~G~ly~~~-~~g~I~~~~~~-G-~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~ 144 (239)
++|-.+.|.++++. ..+-|..||+- + ++..+....-.-. .+.++.||+-.++.+..|.+++..
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred eeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEeee
Confidence 46666677777655 55556667762 2 2222221112233 566778997666666678888864
No 310
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.03 E-value=1.1e+02 Score=31.01 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=47.9
Q ss_pred CCcceEEEcCCC-CEEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 77 NGPEDVCVDRNG-VLYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 77 ~gPe~ia~d~~G-~ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
..-.|++|.|.. .|.++.+.|.|-.||- -|. +..|.+..|.-. |+.|.+++-|||+....-.+++.
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEE
Confidence 345678999865 4556669999988873 233 345556666667 99999999999997766666665
No 311
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=66.58 E-value=94 Score=27.58 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=33.8
Q ss_pred CCCCEEEE-eCCCeEEEEec-CCcEEEe------eeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 86 RNGVLYTA-TRDGWIKRLHK-NGTWENW------KLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 86 ~~G~ly~~-~~~g~I~~~~~-~G~~~~~------~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
|+-.+|.. +.+.-|+.||. +|+.+.- .+.....+ .+.|.+||.-+.|.. ++.+++.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGy-krcirvF 184 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGY-KRCIRVF 184 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecc-cceEEEe
Confidence 34466644 47788999985 6765321 12234466 889999996555543 4455543
No 312
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=78 Score=29.60 Aligned_cols=122 Identities=10% Similarity=0.048 Sum_probs=63.5
Q ss_pred EEeCCCeEEEEec-CCc--EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC---ceEEecccCCcccccccc
Q 026389 92 TATRDGWIKRLHK-NGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG---VTVLASHVNGSRINLADD 164 (239)
Q Consensus 92 ~~~~~g~I~~~~~-~G~--~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g---~~~l~~~~~g~~~~~pn~ 164 (239)
.++.++.|..+|. ..+ ..+.......-- |+.+.+||+.+..-...+.+.+.+ .. ...+.+.- ...-.
T Consensus 275 sGsr~~~I~~~dvR~~~~~~~~~~~H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~-----aAVKA 348 (484)
T KOG0305|consen 275 SGSRDGKILNHDVRISQHVVSTLQGHRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT-----AAVKA 348 (484)
T ss_pred EecCCCcEEEEEEecchhhhhhhhcccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEEeccc-----eeeeE
Confidence 5556677766652 110 111111223345 899999998888776677777653 22 22221110 11234
Q ss_pred EEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEE
Q 026389 165 LIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVV 234 (239)
Q Consensus 165 l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyv 234 (239)
++..|- ..|..+... ...++|.-+|..+++...-++.-.....|.+++..+.+..
T Consensus 349 ~awcP~q~~lLAsGGG---------------s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGG---------------SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eeeCCCccCceEEcCC---------------CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence 555553 234443322 1245666677776665555555556667777776665544
No 313
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.55 E-value=1.1e+02 Score=28.16 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=60.0
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccC--C--ceEEec
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEE--G--VTVLAS 152 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~--g--~~~l~~ 152 (239)
..|..+..+|+|+..+...+|.-..+...+-... ..|... ..+|-.+|+..|.+. .+.+.+..+ . ...+..
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k---~~G~g~-~~vw~~~n~yAv~~~-~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK---AFGSGL-SFVWSSRNRYAVLES-SSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE---EEEE-S-EEEE-TSSEEEEE-T-TS-EEEEETTEE-TT-----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc---ccCcee-EEEEecCccEEEEEC-CCeEEEEEcCccccceEEcC
Confidence 4699999999998886677777766664221111 123444 666766667666665 444444211 1 111111
Q ss_pred ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEE
Q 026389 153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL 232 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~l 232 (239)
.. .+.+|-- |.+..... ++.|..||..++++..-++. .....|.++++|+++
T Consensus 108 ~~------~~~~If~---G~LL~~~~------------------~~~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~v 159 (443)
T PF04053_consen 108 PF------SVEKIFG---GNLLGVKS------------------SDFICFYDWETGKLIRRIDV-SAVKYVIWSDDGELV 159 (443)
T ss_dssp SS-------EEEEE----SSSEEEEE------------------TTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEE
T ss_pred Cc------ccceEEc---CcEEEEEC------------------CCCEEEEEhhHcceeeEEec-CCCcEEEEECCCCEE
Confidence 10 1222222 65544432 24688999987766444442 113788899988866
Q ss_pred EE
Q 026389 233 VV 234 (239)
Q Consensus 233 yv 234 (239)
-+
T Consensus 160 al 161 (443)
T PF04053_consen 160 AL 161 (443)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 314
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.47 E-value=1e+02 Score=27.65 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=69.8
Q ss_pred EEEcCCCCEEEE-eCCCeEEEEec-CC-------------cEEEeeeccCcCccCeEEc---C-CCCEEEEeCCCCeEEE
Q 026389 82 VCVDRNGVLYTA-TRDGWIKRLHK-NG-------------TWENWKLIGGDTLLGITTT---Q-ENEILVCDADKGLLKV 142 (239)
Q Consensus 82 ia~d~~G~ly~~-~~~g~I~~~~~-~G-------------~~~~~~~~~~~p~~Gl~~d---~-~G~L~v~d~~~g~~~v 142 (239)
|.+..||.|+.+ +.+.+|..|-. ++ +...|+.....|. +... . .|...+.-+..+.+++
T Consensus 241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~--i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS--ISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc--hhhccCCCCCccEEEeecccceEEE
Confidence 566678888855 47777766653 12 0112332222221 1110 1 2245555566777777
Q ss_pred c--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CC
Q 026389 143 T--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SL 217 (239)
Q Consensus 143 ~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l 217 (239)
. ..| +-.|... .+...++++.|.|...++-+. ++.|-.||.++++-..... .-
T Consensus 319 wdv~tg~cL~tL~gh-----dnwVr~~af~p~Gkyi~ScaD-----------------Dktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGH-----DNWVRGVAFSPGGKYILSCAD-----------------DKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred EeccCCeEEEEEecc-----cceeeeeEEcCCCeEEEEEec-----------------CCcEEEEEeccceeeeccCCCc
Confidence 5 566 3344332 256789999999998888765 4677788887665443332 23
Q ss_pred CCcceEEEcCC
Q 026389 218 FFANGVALSKD 228 (239)
Q Consensus 218 ~~pnGia~s~d 228 (239)
.|-+-+.|..+
T Consensus 377 hfvt~lDfh~~ 387 (406)
T KOG0295|consen 377 HFVTSLDFHKT 387 (406)
T ss_pred ceeEEEecCCC
Confidence 34455666544
No 315
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=65.15 E-value=85 Score=26.56 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=76.3
Q ss_pred cCCcceEEEcCCCCEEEEe-CCCeEEEEecCCc-EEEeeecc-------------C-cCccCeEEcCCCC--EEEEeCCC
Q 026389 76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGT-WENWKLIG-------------G-DTLLGITTTQENE--ILVCDADK 137 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~-~~~~~~~~-------------~-~p~~Gl~~d~~G~--L~v~d~~~ 137 (239)
..|...++. +|.+|.-. ...+|.|+|...+ +....... + .-. .+++|..|- ||.+....
T Consensus 69 ~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 69 WQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDENGLWVIYATEDNN 145 (250)
T ss_pred eccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcCCCEEEEEecCCCC
Confidence 456655554 57888654 6789999996433 32121110 1 113 688887762 44455555
Q ss_pred CeEE---EccCC---ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceE-EEEeCCCCeE
Q 026389 138 GLLK---VTEEG---VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKL-LKYDPSLNET 210 (239)
Q Consensus 138 g~~~---v~~~g---~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v-~~~d~~~~~~ 210 (239)
|.+. +|++- .+..-...... ..-| ++=-=|.||++++...- ..+| +.||..+++.
T Consensus 146 g~ivvskld~~tL~v~~tw~T~~~k~--~~~n--aFmvCGvLY~~~s~~~~--------------~~~I~yafDt~t~~~ 207 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNTSYPKR--SAGN--AFMVCGVLYATDSYDTR--------------DTEIFYAFDTYTGKE 207 (250)
T ss_pred CcEEEEeeCcccCceEEEEEeccCch--hhcc--eeeEeeEEEEEEECCCC--------------CcEEEEEEECCCCce
Confidence 5343 34332 22222222221 1122 33335899999876321 1344 6789877655
Q ss_pred EEecC----CCCCcceEEEcCCCCEEEEEeCC
Q 026389 211 SILLD----SLFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 211 ~~~~~----~l~~pnGia~s~dg~~lyvadt~ 238 (239)
+.+.- .......|..+|-.+.||+=|.+
T Consensus 208 ~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G 239 (250)
T PF02191_consen 208 EDVSIPFPNPYGNISMLSYNPRDKKLYAWDNG 239 (250)
T ss_pred eceeeeeccccCceEeeeECCCCCeEEEEECC
Confidence 43321 12334567888988889986654
No 316
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=64.91 E-value=78 Score=27.51 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=52.5
Q ss_pred cCccCeEEcCCCCEEEEeCCC-CeEEEc-cCC-ceEEeccc-------CCccccccccEEEc----CCCCEEEEeCCCCc
Q 026389 117 DTLLGITTTQENEILVCDADK-GLLKVT-EEG-VTVLASHV-------NGSRINLADDLIAA----TDGSIYFSVASTKF 182 (239)
Q Consensus 117 ~p~~Gl~~d~~G~L~v~d~~~-g~~~v~-~~g-~~~l~~~~-------~g~~~~~pn~l~vd----~dG~iy~td~~~~~ 182 (239)
+.+ .+..+.+|+++|+.+.. -++.++ .+| +....... .+..+.+-.+..+- .+|+|-+=|....-
T Consensus 145 HiN-sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~ 223 (299)
T PF14269_consen 145 HIN-SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSD 223 (299)
T ss_pred Eee-eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCC
Confidence 356 67778899988887664 455677 577 54433211 12235555666666 66766655542100
Q ss_pred CcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 183 ~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~ 214 (239)
. .-.....++++.+|+.+++++.+.
T Consensus 224 ~-------~~~~~s~~~v~~ld~~~~~~~~~~ 248 (299)
T PF14269_consen 224 F-------NGTEPSRGLVLELDPETMTVTLVR 248 (299)
T ss_pred C-------CCCcCCCceEEEEECCCCEEEEEE
Confidence 0 011335689999999876665443
No 317
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=64.66 E-value=11 Score=34.76 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.0
Q ss_pred CccccccccEEEcCCCCEEEEeCC
Q 026389 156 GSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 156 g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
+..|..|.++.+|.||..|+||..
T Consensus 463 ~~~fylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 463 KNLFYLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred CCceecCCcceecCCCcEEeeccc
Confidence 346788999999999999999976
No 318
>PHA02713 hypothetical protein; Provisional
Probab=64.62 E-value=1.3e+02 Score=28.53 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=55.7
Q ss_pred CCCEEEEe-CC------CeEEEEecC-CcEEEeeecc-CcCccCeEEcCCCCEEEEeCCCC-----eE-EEcc-CC-ceE
Q 026389 87 NGVLYTAT-RD------GWIKRLHKN-GTWENWKLIG-GDTLLGITTTQENEILVCDADKG-----LL-KVTE-EG-VTV 149 (239)
Q Consensus 87 ~G~ly~~~-~~------g~I~~~~~~-G~~~~~~~~~-~~p~~Gl~~d~~G~L~v~d~~~g-----~~-~v~~-~g-~~~ 149 (239)
++.||+.. .+ ..++++|+. ++|....... .+-..+++. -+|+|||.....+ .+ ..++ .. -+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 67888543 21 357889874 4454433211 221203333 4689999865422 12 2333 22 222
Q ss_pred EecccCCccccccccEEEcCCCCEEEEeCCCCcC---cccccccc--e-eecCCceEEEEeCCCCeEEEec
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFG---LHNWGLDL--L-EAKPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~---~~~~~~~~--~-e~~~~g~v~~~d~~~~~~~~~~ 214 (239)
+.. ... +.... + ++.-+|.||+........ ...++..+ . .......+.+|||.+.+-+.+.
T Consensus 382 ~~~-mp~-~r~~~-~-~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 382 LPD-MPI-ALSSY-G-MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred CCC-CCc-ccccc-c-EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 211 111 11111 2 233478999975432100 00000000 0 0111357999999988776554
No 319
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.20 E-value=41 Score=31.71 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.6
Q ss_pred CceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEE
Q 026389 197 HGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVV 234 (239)
Q Consensus 197 ~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyv 234 (239)
.|.|-.||.-+......+.+|..| .+|-.+.||++++.
T Consensus 450 ~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 450 KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence 477878887655666677777765 78999999998753
No 320
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.16 E-value=1e+02 Score=27.17 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=50.8
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC--c-eEEe
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG--V-TVLA 151 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g--~-~~l~ 151 (239)
..++-|.|++.|.-|+-....+|-.|..+. ++-.......+++ -+.++..+.|+|.-...-+...|. ++ . +.++
T Consensus 169 ~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l-~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 169 NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRIL-CATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccce-eeeecCCceEEEecCCceEEEeccCCCccceeeec
Confidence 346667888877655444444555544322 1211122235677 788877778888866544444553 34 2 2222
Q ss_pred cccCCccccccccEE--EcCCCCEEEEeCC
Q 026389 152 SHVNGSRINLADDLI--AATDGSIYFSVAS 179 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~--vd~dG~iy~td~~ 179 (239)
.. ++.-++. .++++.+.+|-++
T Consensus 248 H~------~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 248 HE------NRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred ch------hheeeeEEEecCCceEEEEecc
Confidence 21 2233444 2345677777766
No 321
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=64.08 E-value=55 Score=27.49 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=10.8
Q ss_pred ccEEEcCCCCEEE
Q 026389 163 DDLIAATDGSIYF 175 (239)
Q Consensus 163 n~l~vd~dG~iy~ 175 (239)
..+.|++||+|+.
T Consensus 136 ~~~~I~~dG~i~~ 148 (238)
T PRK12690 136 RSVAVGADGTLSA 148 (238)
T ss_pred ceEEECCCCeEEE
Confidence 3699999999965
No 322
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=63.91 E-value=88 Score=26.32 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=38.5
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEe--c------CCc-E-----EE-e---eeccCcCccCeEEcCCCCEEEEeCCCC
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLH--K------NGT-W-----EN-W---KLIGGDTLLGITTTQENEILVCDADKG 138 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~--~------~G~-~-----~~-~---~~~~~~p~~Gl~~d~~G~L~v~d~~~g 138 (239)
+.-..++|.|.|.||....+.+-+|+- | .+. . .+ + ....+..+ -.++.+.|.|+.+.++..
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy-c~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY-CTAWSPCGELIATGSNDK 111 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE-EEEecCccCeEEecCCCc
Confidence 455678999999999544444444443 1 110 0 01 1 11234455 678889999998877765
Q ss_pred eEEE
Q 026389 139 LLKV 142 (239)
Q Consensus 139 ~~~v 142 (239)
.+++
T Consensus 112 ~ik~ 115 (350)
T KOG0641|consen 112 TIKV 115 (350)
T ss_pred eEEE
Confidence 5544
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.15 E-value=1.5e+02 Score=28.71 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=20.6
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEe
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLH 103 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~ 103 (239)
..|..++.+|+|+..+.+.+|.-..+.
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEE
Confidence 368888888999988878777665554
No 324
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=62.61 E-value=1.1e+02 Score=27.06 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=14.1
Q ss_pred CCcceEEEcCCCCEEEEeC
Q 026389 77 NGPEDVCVDRNGVLYTATR 95 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~ 95 (239)
..=||++++++ ++|++..
T Consensus 170 ~nIEGlA~~~~-~l~lGfR 187 (330)
T PF12275_consen 170 FNIEGLAVDPD-RLYLGFR 187 (330)
T ss_pred CCeeeeEecCC-eEEEEee
Confidence 45688999975 9998863
No 325
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=62.00 E-value=1.1e+02 Score=27.72 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=11.8
Q ss_pred CCCEEEEeCCCeEEEEecC
Q 026389 87 NGVLYTATRDGWIKRLHKN 105 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~~ 105 (239)
+|.+|+.+..|+++.++.+
T Consensus 209 kGkfYAvD~~G~l~~i~~~ 227 (373)
T PLN03215 209 KGQTYALDSIGIVYWINSD 227 (373)
T ss_pred CCEEEEEcCCCeEEEEecC
Confidence 4666666656777766643
No 326
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=61.81 E-value=1.3e+02 Score=29.30 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=45.8
Q ss_pred eCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CCceEEecccCCccccccccEEEcC
Q 026389 94 TRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EGVTVLASHVNGSRINLADDLIAAT 169 (239)
Q Consensus 94 ~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g~~~l~~~~~g~~~~~pn~l~vd~ 169 (239)
+.|-.|..||. +++. ..+.......+ |+++.++|+...+-...|.+++. + .+.+.+.+. .|..-..---|...-
T Consensus 697 syd~Ti~lWDl~~~~~~~~l~gHtdqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg-~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 697 SYDSTIELWDLANAKLYSRLVGHTDQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG-KGPVGTRGARILWAC 774 (1012)
T ss_pred hccceeeeeehhhhhhhheeccCcCcee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccC-CCCccCcceeEEEEe
Confidence 45566666664 2221 22233345567 99999999988887778888887 3 333333221 111111223466677
Q ss_pred CCCEEEE
Q 026389 170 DGSIYFS 176 (239)
Q Consensus 170 dG~iy~t 176 (239)
||++.+.
T Consensus 775 dgr~viv 781 (1012)
T KOG1445|consen 775 DGRIVIV 781 (1012)
T ss_pred cCcEEEE
Confidence 8876554
No 327
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=60.93 E-value=35 Score=32.97 Aligned_cols=97 Identities=12% Similarity=0.216 Sum_probs=52.5
Q ss_pred cceEEEcCCCCEEEEe-C----C-CeEEEEecCCcEEEeeeccCcCc--cCeEEcCCCCEEEEeCCCCeEEEcc--CC--
Q 026389 79 PEDVCVDRNGVLYTAT-R----D-GWIKRLHKNGTWENWKLIGGDTL--LGITTTQENEILVCDADKGLLKVTE--EG-- 146 (239)
Q Consensus 79 Pe~ia~d~~G~ly~~~-~----~-g~I~~~~~~G~~~~~~~~~~~p~--~Gl~~d~~G~L~v~d~~~g~~~v~~--~g-- 146 (239)
--+++.+++|+|..+. + . -.|+.|+. +.+.......++.+ +-|+|.+||+.+.+-+..+.+.+.. ++
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t-~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNT-ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEec-cchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc
Confidence 4468888999998664 2 2 24445543 33221112233433 1478999999888777777776652 11
Q ss_pred --ceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 147 --VTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 147 --~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
.+ +...-... +-.-+....|++.-++|.+.
T Consensus 607 ~e~~-fa~~k~Ht--RIIWdcsW~pde~~FaTaSR 638 (764)
T KOG1063|consen 607 DEFR-FACLKAHT--RIIWDCSWSPDEKYFATASR 638 (764)
T ss_pred hhhh-hccccccc--eEEEEcccCcccceeEEecC
Confidence 11 11111111 22456777777765666654
No 328
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=60.86 E-value=1.4e+02 Score=30.52 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=29.9
Q ss_pred CceEEEE----eCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 197 HGKLLKY----DPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 197 ~g~v~~~----d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
+|.|+.+ ++++.+++.+-.--..-..+++|||+..|.++.
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence 4888888 777777777754344567789999999887654
No 329
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=60.85 E-value=1.1e+02 Score=26.44 Aligned_cols=134 Identities=12% Similarity=0.070 Sum_probs=72.1
Q ss_pred EEEcCCCCEEEEe-CCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceEEecccCC
Q 026389 82 VCVDRNGVLYTAT-RDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVLASHVNG 156 (239)
Q Consensus 82 ia~d~~G~ly~~~-~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~l~~~~~g 156 (239)
|-+..+|.|.+++ .|..+-.|-. +|+. -++....|... .+.+|.+-+..++.+.....++. +.|..+ +..-.+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~l-a~~k~~ 93 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQL-ATWKTN 93 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEE-EEeecC
Confidence 5666788877655 6666555443 6653 23333334455 66677777777776655555554 667211 111112
Q ss_pred ccccccccEEEcCCCCEE--EEeCCCCcCcccccccceeecCCceEEEEeCC-------CCe-EEEecCCCCCcceEEEc
Q 026389 157 SRINLADDLIAATDGSIY--FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-------LNE-TSILLDSLFFANGVALS 226 (239)
Q Consensus 157 ~~~~~pn~l~vd~dG~iy--~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-------~~~-~~~~~~~l~~pnGia~s 226 (239)
.+ .-.+.++.+|++. .+|-.-.+ .+.|..||.. +.+ +.++...-..++-+.++
T Consensus 94 ~~---Vk~~~F~~~gn~~l~~tD~~mg~--------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 94 SP---VKRVDFSFGGNLILASTDKQMGY--------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred Ce---eEEEeeccCCcEEEEEehhhcCc--------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 22 3467888889654 45543211 3455555543 233 34444444566667777
Q ss_pred CCCCEEEE
Q 026389 227 KDEDYLVV 234 (239)
Q Consensus 227 ~dg~~lyv 234 (239)
|-+++|+.
T Consensus 157 ~l~~~ii~ 164 (327)
T KOG0643|consen 157 PLGETIIA 164 (327)
T ss_pred ccCCEEEE
Confidence 77776654
No 330
>PRK13614 lipoprotein LpqB; Provisional
Probab=59.16 E-value=1.7e+02 Score=28.05 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=52.1
Q ss_pred CcceEEEcCCCCEEEEe-CCC-eEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCC--CeEEEccCC----c--
Q 026389 78 GPEDVCVDRNGVLYTAT-RDG-WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK--GLLKVTEEG----V-- 147 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~-~~g-~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~--g~~~v~~~g----~-- 147 (239)
.+...++.++|..+... .++ +++.....+..+.+.. +..++--.||.+|.+|+.+.+. .++++..+| .
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~--g~~Lt~PS~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~ 421 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTS--GSTLTRPSFSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQA 421 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCcceeeec--CCCccCCcccCCCCEEEeeCCCCceEEEEecCCCcccccc
Confidence 35566888888776443 444 4554444343333222 2222245688889999998766 666665433 1
Q ss_pred ---eEEecccCCccccccccEEEcCCC-CEE
Q 026389 148 ---TVLASHVNGSRINLADDLIAATDG-SIY 174 (239)
Q Consensus 148 ---~~l~~~~~g~~~~~pn~l~vd~dG-~iy 174 (239)
.+-....+| .....+.+++|| ++-
T Consensus 422 ~~~~v~~~~l~g---~~I~~lrvSrDG~R~A 449 (573)
T PRK13614 422 PTVTLTADWLAG---RTVKELRVSREGVRAL 449 (573)
T ss_pred cceeecccccCC---CeeEEEEECCCccEEE
Confidence 111222333 236789999999 543
No 331
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=58.38 E-value=15 Score=32.01 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=41.1
Q ss_pred CcCCcceEEEcC-CCCEEEEeCCCeEEEEecCCcEEEee-eccCcCccCeEEcCCCCEEE
Q 026389 75 ILNGPEDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWK-LIGGDTLLGITTTQENEILV 132 (239)
Q Consensus 75 ~~~gPe~ia~d~-~G~ly~~~~~g~I~~~~~~G~~~~~~-~~~~~p~~Gl~~d~~G~L~v 132 (239)
.++.-.+|+|.| .|.|.+...||+...||.+-+.+... +....|.+-..|+.+|.+|+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 356677889998 57777777899999999875433222 34455664677889998876
No 332
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=58.14 E-value=1.6e+02 Score=27.53 Aligned_cols=136 Identities=14% Similarity=0.064 Sum_probs=68.6
Q ss_pred eEEEcCCCCEEEE-eCCCeEEEEecCCc--EEEeeeccCcCccCeEEcC-CCCEEEEeCC--CCeEEEc-c-CCceEEec
Q 026389 81 DVCVDRNGVLYTA-TRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQ-ENEILVCDAD--KGLLKVT-E-EGVTVLAS 152 (239)
Q Consensus 81 ~ia~d~~G~ly~~-~~~g~I~~~~~~G~--~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~--~g~~~v~-~-~g~~~l~~ 152 (239)
|+.|.+||+...+ ..|+++..||.... ...+....+.-- .+++.+ ...|+++-.+ .+.+++. . .| ..+-.
T Consensus 306 gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK-A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~ 383 (484)
T KOG0305|consen 306 GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK-ALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDS 383 (484)
T ss_pred eeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee-EeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecc
Confidence 6788888876644 47788888875221 222333334444 566663 2345444332 3556664 2 33 11111
Q ss_pred ccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCE
Q 026389 153 HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY 231 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~ 231 (239)
...| ...-.|...+..+ |..|-... . ..=+||+|-. -+.+..+...-...--++++|||.+
T Consensus 384 vdtg---sQVcsL~Wsk~~kEi~sthG~s---~-----------n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 384 VDTG---SQVCSLIWSKKYKELLSTHGYS---E-----------NQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGET 445 (484)
T ss_pred cccC---CceeeEEEcCCCCEEEEecCCC---C-----------CcEEEEeccc-cceeeeecCCcceeEEEEECCCCCE
Confidence 1222 2244566666653 33332221 0 0125666633 2333444444445567899999998
Q ss_pred EEEEe
Q 026389 232 LVVCE 236 (239)
Q Consensus 232 lyvad 236 (239)
+.++.
T Consensus 446 i~t~a 450 (484)
T KOG0305|consen 446 IVTGA 450 (484)
T ss_pred EEEec
Confidence 87764
No 333
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=57.92 E-value=1.4e+02 Score=28.34 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEecccCCccccccccEEEcCCCCEEEEe
Q 026389 105 NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASHVNGSRINLADDLIAATDGSIYFSV 177 (239)
Q Consensus 105 ~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td 177 (239)
+-++..|....|-.+ .+.+++..+|+++....=.+++. ..|..++....+..+ ...+++.|| .+|.--
T Consensus 176 n~k~i~WkAHDGiiL-~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~---ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 176 NSKIIRWRAHDGLVL-SLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYA---ITSVAFNPE-KDYLLW 244 (737)
T ss_pred ccceeEEeccCcEEE-EeecCccccceeecCCceeEEeecccCcccccCChhccc---eeeeeeccc-cceeee
Confidence 334444444444444 44444555565554333334443 233333333333323 356788888 555443
No 334
>PRK13613 lipoprotein LpqB; Provisional
Probab=56.85 E-value=1.9e+02 Score=27.89 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=73.8
Q ss_pred CcceEEEcCCCCEEEEe-CCCeEEEEec---CCc----EEEeeeccCcCccCeEEcCCCCEEEEeCC---CCeEEEc-cC
Q 026389 78 GPEDVCVDRNGVLYTAT-RDGWIKRLHK---NGT----WENWKLIGGDTLLGITTTQENEILVCDAD---KGLLKVT-EE 145 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~-~~g~I~~~~~---~G~----~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~---~g~~~v~-~~ 145 (239)
.+.+.++.++|...... .+++.+.+.+ .++ ...+. .+..++--.+|.+|.+|+.|.. ..++++. .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~--~~~~Lt~PS~d~~g~vWtvd~~~~~~~vl~v~~~~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT--ADGRLTSPSWDGRGDLWVVDRDPADPRLLWLLQGD 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee--ccCcccCCcCcCCCCEEEecCCCCCceEEEEEcCC
Confidence 45677888888766443 4555555532 233 11111 1222225568888999999763 2346655 56
Q ss_pred C-c-eEEecccCCccccccccEEEcCCC-CE-EEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc
Q 026389 146 G-V-TVLASHVNGSRINLADDLIAATDG-SI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN 221 (239)
Q Consensus 146 g-~-~~l~~~~~g~~~~~pn~l~vd~dG-~i-y~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn 221 (239)
| . ++-.....| .....+.+++|| ++ .+.+...+ .......++....|. .++ .+.+.+...+..+.
T Consensus 442 G~~~~V~~~~l~g---~~I~~lrvSrDG~RvAvv~~~~g~---~~v~va~V~R~~~G~-~~l----~~~~~l~~~l~~v~ 510 (599)
T PRK13613 442 GEPVEVRTPELDG---HRVVAVRVARDGVRVALIVEKDGR---RSLQIGRIVRDAKAV-VSV----EEFRSLAPELEDVT 510 (599)
T ss_pred CcEEEeeccccCC---CEeEEEEECCCccEEEEEEecCCC---cEEEEEEEEeCCCCc-EEe----eccEEeccCCCccc
Confidence 6 3 222222333 246889999999 54 44542210 000011122222332 111 12334445566788
Q ss_pred eEEEcCCCCEEEE
Q 026389 222 GVALSKDEDYLVV 234 (239)
Q Consensus 222 Gia~s~dg~~lyv 234 (239)
.+++..+++ |.|
T Consensus 511 ~~~W~~~~s-L~V 522 (599)
T PRK13613 511 DMSWAGDSQ-LVV 522 (599)
T ss_pred eeEEcCCCE-EEE
Confidence 999988776 444
No 335
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=56.35 E-value=1.2e+02 Score=25.49 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=40.1
Q ss_pred cceEEEcC-CCCEEEEeCCCeEEEEec-CCcEEEee------eccCcCccCeEEcCC-CCEEEEeCCCCeEEEc
Q 026389 79 PEDVCVDR-NGVLYTATRDGWIKRLHK-NGTWENWK------LIGGDTLLGITTTQE-NEILVCDADKGLLKVT 143 (239)
Q Consensus 79 Pe~ia~d~-~G~ly~~~~~g~I~~~~~-~G~~~~~~------~~~~~p~~Gl~~d~~-G~L~v~d~~~g~~~v~ 143 (239)
--||.+-| +|.||--...++||.+++ +|..+... ...+... |+-|+|. +||-|......-++++
T Consensus 29 l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~-gvDFNP~aDRlRvvs~~GqNlR~n 101 (236)
T PF14339_consen 29 LVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAF-GVDFNPAADRLRVVSNTGQNLRLN 101 (236)
T ss_pred EEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceE-EEecCcccCcEEEEccCCcEEEEC
Confidence 34566666 899997778899999997 56543331 1123456 7777743 4776665444445555
No 336
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=56.27 E-value=84 Score=29.91 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=52.2
Q ss_pred cceEEEcCCCCEE-EEeCCCeEEEEecCC-cEEEeeecc--CcCccCeEEc--CCCCEEEEeCCCCeEEEc-cC------
Q 026389 79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENWKLIG--GDTLLGITTT--QENEILVCDADKGLLKVT-EE------ 145 (239)
Q Consensus 79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~G-~~~~~~~~~--~~p~~Gl~~d--~~G~L~v~d~~~g~~~v~-~~------ 145 (239)
-..++|..+|.+. .|+.|-+|..||+-- +......++ .... ...|- .+++++++-++...+++. .+
T Consensus 53 VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF-svKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIF-SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG 131 (758)
T ss_pred ecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccccee-EEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence 3458899999877 566888999999742 221112221 1122 23332 445788887777777664 22
Q ss_pred ---C-ceEEecccCCccccccccEEEcCCC-CEEEEeC
Q 026389 146 ---G-VTVLASHVNGSRINLADDLIAATDG-SIYFSVA 178 (239)
Q Consensus 146 ---g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~ 178 (239)
| .+... .-+--.+..--|++.++| ..+++-+
T Consensus 132 ~d~~~~~~~~--~~~cht~rVKria~~p~~Phtfwsas 167 (758)
T KOG1310|consen 132 MDHGMEETTR--CWSCHTDRVKRIATAPNGPHTFWSAS 167 (758)
T ss_pred cccCccchhh--hhhhhhhhhhheecCCCCCceEEEec
Confidence 1 11111 001112344567888887 6665543
No 337
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=56.22 E-value=1.9e+02 Score=27.58 Aligned_cols=120 Identities=13% Similarity=0.204 Sum_probs=65.7
Q ss_pred CCCeEEEEecC-CcE-EEeeecc-----CcCccCeEEcCCCCEEEEeCCCCeEEEcc--CCceEEecc---cCCcccccc
Q 026389 95 RDGWIKRLHKN-GTW-ENWKLIG-----GDTLLGITTTQENEILVCDADKGLLKVTE--EGVTVLASH---VNGSRINLA 162 (239)
Q Consensus 95 ~~g~I~~~~~~-G~~-~~~~~~~-----~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g~~~l~~~---~~g~~~~~p 162 (239)
..++++++|.. |++ +.|.-.. -.|..-.+--.+..-+|.-+..+++++|+ .|.++.+.. +.+. +-.
T Consensus 488 ~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK--n~F 565 (776)
T COG5167 488 ERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK--NKF 565 (776)
T ss_pred CcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc--ccc
Confidence 56788888753 543 3442211 11210111112334567777789999994 553332222 2221 223
Q ss_pred ccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC-cceEEEcCCCCEEEE
Q 026389 163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF-ANGVALSKDEDYLVV 234 (239)
Q Consensus 163 n~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~-pnGia~s~dg~~lyv 234 (239)
+.......|.|-++.. .|-|-.||.-+......+.++.. .-+|.++.+|++++.
T Consensus 566 ss~~tTesGyIa~as~------------------kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 566 SSGMTTESGYIAAASR------------------KGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred cccccccCceEEEecC------------------CCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence 3444555676655543 36677788766666666666654 478889999997754
No 338
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=56.06 E-value=68 Score=28.09 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=43.0
Q ss_pred CeEEcC-CCCEEEEeCCCCeEEEc---cCC-ceE-EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceee
Q 026389 121 GITTTQ-ENEILVCDADKGLLKVT---EEG-VTV-LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194 (239)
Q Consensus 121 Gl~~d~-~G~L~v~d~~~g~~~v~---~~g-~~~-l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~ 194 (239)
.|+|.+ ...+++|.+..+.+++. .+| ... .....++. +-+++...||+..|+...
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~P----vL~v~WsddgskVf~g~~--------------- 92 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGP----VLDVCWSDDGSKVFSGGC--------------- 92 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCC----eEEEEEccCCceEEeecc---------------
Confidence 678886 55788788878887775 245 211 11122332 347888899965554433
Q ss_pred cCCceEEEEeCCCCeEEEec
Q 026389 195 KPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 195 ~~~g~v~~~d~~~~~~~~~~ 214 (239)
.+.+-.||..++++..+.
T Consensus 93 --Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 93 --DKQAKLWDLASGQVSQVA 110 (347)
T ss_pred --CCceEEEEccCCCeeeee
Confidence 355666666666655543
No 339
>PHA02790 Kelch-like protein; Provisional
Probab=55.73 E-value=1.7e+02 Score=27.06 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=50.2
Q ss_pred CCCEEEEe-C--CCeEEEEec-CCcEEEeeecc-CcCccCeEEcCCCCEEEEeCCCC---eE-EEccC-C-ceEEecccC
Q 026389 87 NGVLYTAT-R--DGWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDADKG---LL-KVTEE-G-VTVLASHVN 155 (239)
Q Consensus 87 ~G~ly~~~-~--~g~I~~~~~-~G~~~~~~~~~-~~p~~Gl~~d~~G~L~v~d~~~g---~~-~v~~~-g-~~~l~~~~~ 155 (239)
+|.||+.. . ...+.++++ .++|....... .+...+++. -+|+|||.-...+ .+ ..++. . -+.+.. -
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--m 394 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--T 394 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC--C
Confidence 67888543 2 245778886 34565433321 121102232 5789999854321 12 23432 2 111111 0
Q ss_pred CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389 156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~ 214 (239)
..+. ....++.-+|.||+.. |.+.+|||++.+-+.+.
T Consensus 395 ~~~r--~~~~~~~~~~~IYv~G--------------------G~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 395 YYPH--YKSCALVFGRRLFLVG--------------------RNAEFYCESSNTWTLID 431 (480)
T ss_pred CCcc--ccceEEEECCEEEEEC--------------------CceEEecCCCCcEeEcC
Confidence 1111 1223344578899864 34567888777666553
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=55.06 E-value=1.7e+02 Score=26.64 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=23.8
Q ss_pred CCcceEEEcCCCCEEEEeCCCeEEEEecCCcE
Q 026389 77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW 108 (239)
Q Consensus 77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~ 108 (239)
...-++.|+.+..|.+-..+|.+..++..|+.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 34556777777777777788998888876765
No 341
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=53.94 E-value=1.8e+02 Score=26.62 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=40.1
Q ss_pred eEEEcC-CCCEEEEeCCCeEEEEecCC--cEEEeee--ccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 81 DVCVDR-NGVLYTATRDGWIKRLHKNG--TWENWKL--IGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~~~g~I~~~~~~G--~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
+++|+. +-.+|.+-.+++|++-|... .+-++.. ..+..+ ||.+.+-.++++.....+++.+.
T Consensus 110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY-~m~~~P~DN~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY-HMDQHPTDNTLIVVTRAKLVSFI 176 (609)
T ss_pred EEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee-ecccCCCCceEEEEecCceEEEE
Confidence 577775 44677777888888877533 2333333 235667 88888777777766666776653
No 342
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=53.89 E-value=1.6e+02 Score=26.15 Aligned_cols=45 Identities=9% Similarity=-0.013 Sum_probs=27.3
Q ss_pred EEeCCCeEEEEecCCcEEEeee-ccCcCccCeEEcCCCCEEEEeCCC
Q 026389 92 TATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCDADK 137 (239)
Q Consensus 92 ~~~~~g~I~~~~~~G~~~~~~~-~~~~p~~Gl~~d~~G~L~v~d~~~ 137 (239)
.++.+..|..|+..|+.-...+ ....-+ ..++.|+|+.+++....
T Consensus 204 sas~dt~i~lw~lkGq~L~~idtnq~~n~-~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 204 SASLDTKICLWDLKGQLLQSIDTNQSSNY-DAAVSPDGRFIAVSGFT 249 (420)
T ss_pred EecCCCcEEEEecCCceeeeecccccccc-ceeeCCCCcEEEEecCC
Confidence 3346778888887676432222 222334 67888999977765443
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=53.75 E-value=32 Score=30.82 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=38.3
Q ss_pred ccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc--ceEEEcCCCCEEEEEeC
Q 026389 161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA--NGVALSKDEDYLVVCET 237 (239)
Q Consensus 161 ~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p--nGia~s~dg~~lyvadt 237 (239)
...+..+.|||+ +.++-+.. +...-.++.+|..+|+... +.+..+ .++++.+|++.+|.+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~-------------G~e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDG-------------GSEWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEET-------------TSSEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEEC
T ss_pred EeeeeeECCCCCEEEEEecCC-------------CCceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEe
Confidence 345778899995 44543220 1112468899998886532 222222 34999999998877654
No 344
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=53.72 E-value=52 Score=27.87 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=13.7
Q ss_pred ccccc---ccEEEcCCCCEEEE
Q 026389 158 RINLA---DDLIAATDGSIYFS 176 (239)
Q Consensus 158 ~~~~p---n~l~vd~dG~iy~t 176 (239)
++..| .++.|++||+|+..
T Consensus 133 pI~lp~~~~~i~I~~dG~I~~~ 154 (253)
T PRK12689 133 PITFQPTDTGIAISPDGTVSVN 154 (253)
T ss_pred CeEeCCCCCcEEECCCCeEEEe
Confidence 45444 27999999999654
No 345
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=52.87 E-value=1.2e+02 Score=24.36 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=6.3
Q ss_pred CcceEE--EcCCCC
Q 026389 219 FANGVA--LSKDED 230 (239)
Q Consensus 219 ~pnGia--~s~dg~ 230 (239)
+|+|-. +-+||+
T Consensus 142 yPDGTvk~vy~dG~ 155 (179)
T PF07202_consen 142 YPDGTVKTVYPDGR 155 (179)
T ss_pred cCCCCEEEEecCCC
Confidence 566633 345654
No 346
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=52.66 E-value=2.1e+02 Score=27.13 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=64.5
Q ss_pred CeEEEEecCCcEEEee-eccCcCccCeEEcCCCCEEEEeC-C-CCeEEEc-cCCceEEecccCCccccccccEEEcCCCC
Q 026389 97 GWIKRLHKNGTWENWK-LIGGDTLLGITTTQENEILVCDA-D-KGLLKVT-EEGVTVLASHVNGSRINLADDLIAATDGS 172 (239)
Q Consensus 97 g~I~~~~~~G~~~~~~-~~~~~p~~Gl~~d~~G~L~v~d~-~-~g~~~v~-~~g~~~l~~~~~g~~~~~pn~l~vd~dG~ 172 (239)
..++-++.+|+...+. ...|-.+ .+.+.++|+=+..-. + -..+.+. ..| .++.+..+|.+ |.+-+.|.|+
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVh-dv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egpR----N~~~fnp~g~ 324 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVH-DVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGPR----NTAFFNPHGN 324 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCce-EEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCCc----cceEECCCCC
Confidence 4566666665443332 2245556 788888886443322 2 1233333 344 12222233422 7788888887
Q ss_pred EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC--cceEEEcCCCCEEEEEeCC
Q 026389 173 IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF--ANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 173 iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~--pnGia~s~dg~~lyvadt~ 238 (239)
|.+--. |+- -.|.+-.||-.+.+ .+..+.- ..=..++|||+++++|-|.
T Consensus 325 ii~lAG---FGN-----------L~G~mEvwDv~n~K---~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 325 IILLAG---FGN-----------LPGDMEVWDVPNRK---LIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEEee---cCC-----------CCCceEEEeccchh---hccccccCCceEEEEcCCCcEEEEEecc
Confidence 654322 211 14788888876432 2333322 3346689999999988775
No 347
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=52.21 E-value=1.9e+02 Score=26.43 Aligned_cols=108 Identities=11% Similarity=0.129 Sum_probs=56.3
Q ss_pred eEEEcC-CCCEE-EEeCCCeEEEEe-cCC-cEE------EeeeccCcCccC-eEEcCC-CCEEEEeCCCCeEEEc--cCC
Q 026389 81 DVCVDR-NGVLY-TATRDGWIKRLH-KNG-TWE------NWKLIGGDTLLG-ITTTQE-NEILVCDADKGLLKVT--EEG 146 (239)
Q Consensus 81 ~ia~d~-~G~ly-~~~~~g~I~~~~-~~G-~~~------~~~~~~~~p~~G-l~~d~~-G~L~v~d~~~g~~~v~--~~g 146 (239)
+++|+| +.++. .++.|.+|..|+ |++ ... +......+-. | +++.+- -+++.+......+.+. ..|
T Consensus 86 Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV-g~V~wHPtA~NVLlsag~Dn~v~iWnv~tg 164 (472)
T KOG0303|consen 86 DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV-GLVQWHPTAPNVLLSAGSDNTVSIWNVGTG 164 (472)
T ss_pred ccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE-EEEeecccchhhHhhccCCceEEEEeccCC
Confidence 577887 44444 666888888777 333 111 1111111222 3 333332 2444444445555554 344
Q ss_pred ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389 147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET 210 (239)
Q Consensus 147 ~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~ 210 (239)
..++.-. .. .-...+.+..||.+++|... .-+|-.+||.++++
T Consensus 165 eali~l~--hp--d~i~S~sfn~dGs~l~Ttck-----------------DKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 165 EALITLD--HP--DMVYSMSFNRDGSLLCTTCK-----------------DKKVRVIDPRRGTV 207 (472)
T ss_pred ceeeecC--CC--CeEEEEEeccCCceeeeecc-----------------cceeEEEcCCCCcE
Confidence 2222111 11 12456788889999888765 34666777776655
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=52.12 E-value=52 Score=31.91 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=21.5
Q ss_pred cceEEEcCCC-CEEEEeCCCeEEEEecC
Q 026389 79 PEDVCVDRNG-VLYTATRDGWIKRLHKN 105 (239)
Q Consensus 79 Pe~ia~d~~G-~ly~~~~~g~I~~~~~~ 105 (239)
-..++|+++| ++|.|+..|+|....-+
T Consensus 127 VTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred EEEEEecccccEEeecCCCceEEEEEec
Confidence 4467999987 79999999999776543
No 349
>KOG4328 consensus WD40 protein [Function unknown]
Probab=51.05 E-value=2.1e+02 Score=26.57 Aligned_cols=108 Identities=10% Similarity=0.105 Sum_probs=58.2
Q ss_pred eEEEcC-CCCEEEEeCCCeEEEEecC---CcE---EEeee--ccC---cCccCeEEcCCCCEEEEeCCCCeEEE-ccCCc
Q 026389 81 DVCVDR-NGVLYTATRDGWIKRLHKN---GTW---ENWKL--IGG---DTLLGITTTQENEILVCDADKGLLKV-TEEGV 147 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~~~g~I~~~~~~---G~~---~~~~~--~~~---~p~~Gl~~d~~G~L~v~d~~~g~~~v-~~~g~ 147 (239)
+..|+| +|+|.+++.|..|..||.. ... .++.. ..+ .|+ -.+++++-+|++.-.+..-+.+ +.+|.
T Consensus 374 sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f-KA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 374 SAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF-KAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch-hheeCCCccEEEEeccCcceeEEcCCCC
Confidence 346677 6788888899999988852 111 11111 111 255 6778988877666555444544 45552
Q ss_pred eEEecccCCccc-cccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC
Q 026389 148 TVLASHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS 206 (239)
Q Consensus 148 ~~l~~~~~g~~~-~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~ 206 (239)
+.+... .+... .-|.=....|-+..+.+.+++ .|.+|.|.-+
T Consensus 453 q~v~el-~~P~~~tI~~vn~~HP~~~~~~aG~~s----------------~Gki~vft~k 495 (498)
T KOG4328|consen 453 QMVCEL-HDPESSTIPSVNEFHPMRDTLAAGGNS----------------SGKIYVFTNK 495 (498)
T ss_pred EEeeec-cCccccccccceeecccccceeccCCc----------------cceEEEEecC
Confidence 222211 11100 123334556666655655442 5888887654
No 350
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=50.33 E-value=23 Score=23.24 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.3
Q ss_pred ceEEEEeCCCCeEEEe
Q 026389 198 GKLLKYDPSLNETSIL 213 (239)
Q Consensus 198 g~v~~~d~~~~~~~~~ 213 (239)
=+||+||+++++++..
T Consensus 41 iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 4799999999988654
No 351
>CHL00038 psbL photosystem II protein L
Probab=49.99 E-value=42 Score=19.45 Aligned_cols=11 Identities=0% Similarity=-0.182 Sum_probs=5.0
Q ss_pred cccchhhhhHH
Q 026389 15 SKRCVPVCSGI 25 (239)
Q Consensus 15 ~~~~~~~~~~~ 25 (239)
.|..+-+++.+
T Consensus 14 NRTSLy~GLLl 24 (38)
T CHL00038 14 NRTSLYWGLLL 24 (38)
T ss_pred hhhhHHHHHHH
Confidence 34445555533
No 352
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.47 E-value=98 Score=28.75 Aligned_cols=56 Identities=7% Similarity=0.073 Sum_probs=30.0
Q ss_pred eEEcCCCCEEEEeCCCCeEEEc-cCCceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 122 ITTTQENEILVCDADKGLLKVT-EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 122 l~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
|..+|-+.++=..+.+|.+.+. ++-.+.|+...-. ..-.++|+|+++|+..+|..-
T Consensus 257 m~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH--~g~V~siAv~~~G~YMaTtG~ 313 (545)
T KOG1272|consen 257 MKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH--RGPVSSIAVDRGGRYMATTGL 313 (545)
T ss_pred hhcCCccceEEEcCCCceEEecCCCCcchHHHHHhc--CCCcceEEECCCCcEEeeccc
Confidence 3444444444444456666666 3322333221100 023589999999998888654
No 353
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=48.47 E-value=1.4e+02 Score=28.77 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=51.5
Q ss_pred cceEEEcCCCCEEEEe-C---CCeEEEEecC-Cc-EEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-c-CC--c
Q 026389 79 PEDVCVDRNGVLYTAT-R---DGWIKRLHKN-GT-WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-E-EG--V 147 (239)
Q Consensus 79 Pe~ia~d~~G~ly~~~-~---~g~I~~~~~~-G~-~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~-~g--~ 147 (239)
-..+.|...|.-+.+. . +..|+..+.. .+ ...|....|.+. .+.|.+.- .|+||.. +-+++. - .. +
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq-~v~FHPs~p~lfVaTq--~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ-RVKFHPSKPYLFVATQ--RSVRIYDLSKQELV 600 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCcee-EEEecCCCceEEEEec--cceEEEehhHHHHH
Confidence 3457888788766443 2 2344444321 11 123334557777 78888655 6888865 234433 1 22 2
Q ss_pred eEEecccCCccccccccEEEcCCC-CEEEEeC
Q 026389 148 TVLASHVNGSRINLADDLIAATDG-SIYFSVA 178 (239)
Q Consensus 148 ~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~ 178 (239)
+.+ ..| ......+++++.| +|+++..
T Consensus 601 KkL---~tg--~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 601 KKL---LTG--SKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred HHH---hcC--CeeeeeeeecCCCCeEEEecC
Confidence 222 223 2457889999998 7777753
No 354
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=48.27 E-value=1.8e+02 Score=25.11 Aligned_cols=74 Identities=12% Similarity=0.193 Sum_probs=38.7
Q ss_pred eEEcCCCCEEEEeCCCCeEEEc--cCC-ceEEec-ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCC
Q 026389 122 ITTTQENEILVCDADKGLLKVT--EEG-VTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197 (239)
Q Consensus 122 l~~d~~G~L~v~d~~~g~~~v~--~~g-~~~l~~-~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~ 197 (239)
++...+|+++..-.. ..+++- .|. .+++.+ .+...+.-.-.-++..+|+.+..-..+ +
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S-----------------~ 64 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES-----------------T 64 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC-----------------C
Confidence 455677877665443 344443 344 333322 122223333456788899876544333 3
Q ss_pred ceEEEEeCCCCeEEEe
Q 026389 198 GKLLKYDPSLNETSIL 213 (239)
Q Consensus 198 g~v~~~d~~~~~~~~~ 213 (239)
|.|..||.-+.++..+
T Consensus 65 G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVI 80 (282)
T ss_pred CeEEEEecccceeEEc
Confidence 7777777765444433
No 355
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=47.27 E-value=47 Score=19.35 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=6.3
Q ss_pred cccchhhhhHHHHHH
Q 026389 15 SKRCVPVCSGIVLSC 29 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (239)
.|..+-+++.++.++
T Consensus 15 NRTSLy~GlLlifvl 29 (39)
T PRK00753 15 NRTSLYLGLLLVFVL 29 (39)
T ss_pred chhhHHHHHHHHHHH
Confidence 344444544333333
No 356
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=46.97 E-value=43 Score=28.44 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=11.2
Q ss_pred cEEEcCCCCEEEE
Q 026389 164 DLIAATDGSIYFS 176 (239)
Q Consensus 164 ~l~vd~dG~iy~t 176 (239)
++.|++||.|+..
T Consensus 148 ~~~I~~dG~I~~~ 160 (260)
T PRK12694 148 SLTIGKDGTVSVT 160 (260)
T ss_pred eeEECCCCeEEEe
Confidence 6999999999774
No 357
>COG4393 Predicted membrane protein [Function unknown]
Probab=46.76 E-value=94 Score=27.59 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=22.6
Q ss_pred cCCCCEEEEe---CCCeEEEEe---cCCcEEEeeec----cCcCccCeEEc
Q 026389 85 DRNGVLYTAT---RDGWIKRLH---KNGTWENWKLI----GGDTLLGITTT 125 (239)
Q Consensus 85 d~~G~ly~~~---~~g~I~~~~---~~G~~~~~~~~----~~~p~~Gl~~d 125 (239)
|++|.++.-. .||+++|+. .||+..+|.-. .+-.+ |..+|
T Consensus 286 d~~n~v~ipie~vrDgkLHRF~yIA~dGkaVRFflInk~pdr~s~-~avfD 335 (405)
T COG4393 286 DEGNMVVIPIEQVRDGKLHRFVYIADDGKAVRFFLINKRPDRLSL-GAVFD 335 (405)
T ss_pred CCCCEEEEEHHHcccCceEEEEEEccCCcEEEEEEEecCCCCCCc-eeeeh
Confidence 5556666443 788888864 46776555322 22334 55665
No 358
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=46.45 E-value=1.4e+02 Score=24.89 Aligned_cols=62 Identities=26% Similarity=0.415 Sum_probs=34.3
Q ss_pred cCcCccCeEEcCCCCEEEEeCC-------CCeEEEccCC-ceEEeccc--CCcccccc--ccEEEcCCCCEEEEe
Q 026389 115 GGDTLLGITTTQENEILVCDAD-------KGLLKVTEEG-VTVLASHV--NGSRINLA--DDLIAATDGSIYFSV 177 (239)
Q Consensus 115 ~~~p~~Gl~~d~~G~L~v~d~~-------~g~~~v~~~g-~~~l~~~~--~g~~~~~p--n~l~vd~dG~iy~td 177 (239)
.+||+ .++++.||.|-|-+.. .|-++++++| .++-...+ +|.|+.-| .-+.+..||.|=.-.
T Consensus 74 TgR~L-Dvaiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g~lTiqg~pViG~ggpI~vPp~~~v~I~~DGtIsa~~ 147 (251)
T COG4787 74 TGRPL-DVAIQGDGWLAVQDADGSEAYTRNGNIQIDATGQLTIQGHPVIGEGGPITVPPGAKVTIAADGTISALN 147 (251)
T ss_pred cCCcc-eEEEccCceEEEEcCCCcchheecCceEECcccceecCCCeeecCCCccccCCCceEEEecCceEEecc
Confidence 47888 8888888877776543 2556676655 22211111 22233333 346677788765443
No 359
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=45.97 E-value=2.1e+02 Score=28.40 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=39.6
Q ss_pred ceEEEcCC-CCEEEEeCCCeEEEEec-CCc-EEEeee---ccCcCccCeEEcCCCCEEEEeCCC-CeEEEc-cCC
Q 026389 80 EDVCVDRN-GVLYTATRDGWIKRLHK-NGT-WENWKL---IGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG 146 (239)
Q Consensus 80 e~ia~d~~-G~ly~~~~~g~I~~~~~-~G~-~~~~~~---~~~~p~~Gl~~d~~G~L~v~d~~~-g~~~v~-~~g 146 (239)
-++++||. +.+.++..|..|..|+. +|+ .+.|.. ..|.+. -+..|+.|..+++.-.. .+-.+| -.|
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-Kv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-KVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE-EEEECCCccEEEEeecCCceEEEEeccc
Confidence 36788874 45556677877777774 454 344432 235666 78888888655555433 444445 345
No 360
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=45.52 E-value=57 Score=30.12 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=40.6
Q ss_pred cccccEEE--cCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 160 NLADDLIA--ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 160 ~~pn~l~v--d~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
...+|+.| ++||++-++...-+| |+++.+.|..++++..+.+--.---|.++..|...+|-||
T Consensus 24 SGaiDVIVVE~~Dg~L~CspFhvRF---------------Gkf~~l~ps~kkV~~fvNgkl~~~~Mkl~d~GEafFvf~t 88 (580)
T COG5083 24 SGAIDVIVVEDKDGNLRCSPFHVRF---------------GKFYFLGPSNKKVHLFVNGKLCDITMKLTDQGEAFFVFDT 88 (580)
T ss_pred cCceeEEEEEcCCCCCccccceEEe---------------eeEEEEccCCcEEEEEECceecCCceeeccCceEEEEEec
Confidence 33455433 567888877655433 7888888887888777654322233677777777776665
No 361
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=45.31 E-value=51 Score=28.38 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=35.1
Q ss_pred CeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEE
Q 026389 121 GITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFS 176 (239)
Q Consensus 121 Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~t 176 (239)
|+.+.+|++++.+....|.+++. ... ..+|.-.-. ..|.+++.++-.+..+
T Consensus 256 gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 256 GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAVAFSPDCELMAA 310 (323)
T ss_pred ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEEEeCCCCchhhh
Confidence 78888999999887777777776 344 455543222 3789999998554443
No 362
>PF13964 Kelch_6: Kelch motif
Probab=45.21 E-value=54 Score=19.64 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=24.7
Q ss_pred EcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389 167 AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 167 vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~ 214 (239)
+.-+|.||+--..... ......+++||+.+++-+.+.
T Consensus 8 v~~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEECC
Confidence 3446789987655221 123478999999988877653
No 363
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=44.52 E-value=2.3e+02 Score=25.66 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=31.3
Q ss_pred CcceEEEcC-CCCEEEEeCCCeEEEEec---C-CcEEEeeeccCcCccCeEEcCCCCEEE-EeCCCCeEEEc
Q 026389 78 GPEDVCVDR-NGVLYTATRDGWIKRLHK---N-GTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT 143 (239)
Q Consensus 78 gPe~ia~d~-~G~ly~~~~~g~I~~~~~---~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v-~d~~~g~~~v~ 143 (239)
.|+.+.+.. +-.+.+++..|.++.++. + |.-+.......+-+ .+++.+|++.++ +|. ...+++.
T Consensus 109 ~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~-dVavS~D~~~IitaDR-DEkIRvs 178 (390)
T KOG3914|consen 109 RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLL-DVAVSPDDQFIITADR-DEKIRVS 178 (390)
T ss_pred CcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhh-eeeecCCCCEEEEecC-CceEEEE
Confidence 455555554 334555566666666552 1 22111111223344 778888886444 444 4455554
No 364
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=44.25 E-value=1.3e+02 Score=25.30 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.4
Q ss_pred ccEEEcCCCCEEEE
Q 026389 163 DDLIAATDGSIYFS 176 (239)
Q Consensus 163 n~l~vd~dG~iy~t 176 (239)
..+.|++||.|+..
T Consensus 134 ~~i~I~~dG~I~~~ 147 (246)
T PRK12640 134 AKITIGADGTISAL 147 (246)
T ss_pred CCEEECCCCEEEEe
Confidence 37999999999764
No 365
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=43.75 E-value=2.5e+02 Score=25.77 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=56.2
Q ss_pred CcceEEEcC-CCCEEEEe-CCCeEEEEecC-C--cEEEee-eccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-cCC-ce
Q 026389 78 GPEDVCVDR-NGVLYTAT-RDGWIKRLHKN-G--TWENWK-LIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VT 148 (239)
Q Consensus 78 gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~-G--~~~~~~-~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~g-~~ 148 (239)
.-|+++|.+ +..+|.+. .++++..+|.- + +..... ...+.-+ .++|++-+ .|+.+-+..+.+.+. .-. ..
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn-~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN-CVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee-EEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 345667765 45667444 67788888741 1 111111 2234445 78888665 455555545666554 222 11
Q ss_pred EEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCC
Q 026389 149 VLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS 206 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~ 206 (239)
.+. .+++.. .-...+..+|.- +|..+... .+||..||..
T Consensus 308 ~lh-~~e~H~-dev~~V~WSPh~etvLASSg~-----------------D~rl~vWDls 347 (422)
T KOG0264|consen 308 PLH-TFEGHE-DEVFQVEWSPHNETVLASSGT-----------------DRRLNVWDLS 347 (422)
T ss_pred Cce-eccCCC-cceEEEEeCCCCCceeEeccc-----------------CCcEEEEecc
Confidence 111 112211 113456677764 66665544 4777777764
No 366
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=43.17 E-value=2.6e+02 Score=25.38 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=79.2
Q ss_pred CCcCCcceEEEcCCCCEE-EEeCCCeEEEEec--CC--cEEEe----------e----------eccC--cCccCeEEcC
Q 026389 74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLHK--NG--TWENW----------K----------LIGG--DTLLGITTTQ 126 (239)
Q Consensus 74 g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~--~G--~~~~~----------~----------~~~~--~p~~Gl~~d~ 126 (239)
|--..-++|.++++|..+ .++.|..|..|+. +- +.+.. . ...| .|...+.+..
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 333456788999998766 5568888877772 10 11100 0 0011 1222466666
Q ss_pred CCCEEEEeCCCCeEEEc-cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389 127 ENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY 203 (239)
Q Consensus 127 ~G~L~v~d~~~g~~~v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~ 203 (239)
.+.+|-+....-+..-| ..| ...+.. + ...+.+...+.-++.++.++. ..+-.|
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~---~---ksl~~i~~~~~~~Ll~~gssd-----------------r~irl~ 327 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTT---N---KSLNCISYSPLSKLLASGSSD-----------------RHIRLW 327 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeec---C---cceeEeecccccceeeecCCC-----------------Cceeec
Confidence 66777777655555555 444 333322 2 235778888877888877662 235558
Q ss_pred eCCCCeEEEe----cCCCCCcceEEEcCCCCEEEEEe
Q 026389 204 DPSLNETSIL----LDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 204 d~~~~~~~~~----~~~l~~pnGia~s~dg~~lyvad 236 (239)
||.++.-.++ ...-....++-++|...+.+++-
T Consensus 328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 8876543222 22223456777777777777654
No 367
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=43.15 E-value=61 Score=27.56 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=11.3
Q ss_pred cEEEcCCCCEEEE
Q 026389 164 DLIAATDGSIYFS 176 (239)
Q Consensus 164 ~l~vd~dG~iy~t 176 (239)
.+.|++||.|+..
T Consensus 150 ~~~i~~dG~I~~~ 162 (263)
T PRK12636 150 SFSIGADGTVSYV 162 (263)
T ss_pred eEEECCCCeEEEE
Confidence 7999999999765
No 368
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=42.61 E-value=85 Score=28.65 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=17.1
Q ss_pred CcceEEEcCCCCEEEEEeC
Q 026389 219 FANGVALSKDEDYLVVCET 237 (239)
Q Consensus 219 ~pnGia~s~dg~~lyvadt 237 (239)
.|.-+.+|-||++|||+.|
T Consensus 390 GPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 390 GPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred CceeEEeccCCcEEEEEch
Confidence 5778999999999999986
No 369
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=42.42 E-value=1.2e+02 Score=24.88 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=13.5
Q ss_pred ccccc--ccEEEcCCCCEEEE
Q 026389 158 RINLA--DDLIAATDGSIYFS 176 (239)
Q Consensus 158 ~~~~p--n~l~vd~dG~iy~t 176 (239)
++..| ..+.|++||+|+..
T Consensus 126 pI~ip~~~~i~I~~dG~I~~~ 146 (209)
T PRK12643 126 PIDVPPQAAVTIAADGTISAL 146 (209)
T ss_pred ceEcCCCCcEEECCCCeEEEe
Confidence 34444 37999999999664
No 370
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.33 E-value=82 Score=32.14 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred eEEEcC-CCCEEEEe-CCCeEEEEecCCcEEEeee----ccCcCccCeEEcCCC-CEEEEeCCCCeEEEccCC-ceEEec
Q 026389 81 DVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKL----IGGDTLLGITTTQEN-EILVCDADKGLLKVTEEG-VTVLAS 152 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~----~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~~~g-~~~l~~ 152 (239)
++.|.+ .+++..+. .+|.|+.||-+.--+-+.. ...... -++++..- +++.+-...|...+.+=. .+.+.+
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~-~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ 199 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK-CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK 199 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce-EeccchhhhHHhhccCCCCCceeccccCCCcccc
Q ss_pred ccCCccccccccEEEcCCC--CEEEEeCCCC------cCccc-----------------------ccccceeecCCceEE
Q 026389 153 HVNGSRINLADDLIAATDG--SIYFSVASTK------FGLHN-----------------------WGLDLLEAKPHGKLL 201 (239)
Q Consensus 153 ~~~g~~~~~pn~l~vd~dG--~iy~td~~~~------~~~~~-----------------------~~~~~~e~~~~g~v~ 201 (239)
..+...-...++++.+|++ +|+++....+ |.++. ...-++.-...++++
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Q ss_pred EEeCCCCeE
Q 026389 202 KYDPSLNET 210 (239)
Q Consensus 202 ~~d~~~~~~ 210 (239)
.++++++++
T Consensus 280 ~wN~~tgEv 288 (1049)
T KOG0307|consen 280 CWNPNTGEV 288 (1049)
T ss_pred EecCCCceE
No 371
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=42.32 E-value=3.4e+02 Score=26.51 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=26.0
Q ss_pred cccceEeccCCcCCcceEEEc-----C---CCCEEEEeCCCeEEEEec
Q 026389 65 IQSVTRLGEGILNGPEDVCVD-----R---NGVLYTATRDGWIKRLHK 104 (239)
Q Consensus 65 l~~~~~l~~g~~~gPe~ia~d-----~---~G~ly~~~~~g~I~~~~~ 104 (239)
|+.+=....|.+..|+++--. | ++.||++...++++.+|.
T Consensus 184 L~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa 231 (773)
T COG4993 184 LQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTPHNRVFALDA 231 (773)
T ss_pred cceeEEEecCcccCCCCcccccccccceEECCEEEEecCcceeEEeec
Confidence 444445566777778772211 1 578998887778888775
No 372
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=42.04 E-value=36 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=17.5
Q ss_pred CCCCCcccchhhhh-HHHHHHHHHHHHHhhccCCC
Q 026389 10 TTGSSSKRCVPVCS-GIVLSCLLAFTLQIFFFSPI 43 (239)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 43 (239)
..++..|+- .++. +++.++++.+++.+...||+
T Consensus 9 ~~~~~g~sW-~~LVGVv~~al~~SlLIalaaKC~~ 42 (102)
T PF15176_consen 9 GPGEGGRSW-PFLVGVVVTALVTSLLIALAAKCPV 42 (102)
T ss_pred CCCCCCccc-HhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444443 3444 55555556666666666654
No 373
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=41.87 E-value=2.1e+02 Score=25.78 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=18.9
Q ss_pred ceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 198 g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
..+-.++.++++....+.+ +-.|||--.=...++|+-+
T Consensus 340 RTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGS 377 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGS 377 (499)
T ss_pred ceEEEEeccceeeehhhhc--ccccceehhccCeEEEecC
Confidence 4566677776665433332 3456664432233555543
No 374
>PF15240 Pro-rich: Proline-rich
Probab=41.73 E-value=17 Score=29.15 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHH
Q 026389 21 VCSGIVLSCLLAFT 34 (239)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (239)
||++||.+|+|||.
T Consensus 1 MLlVLLSvALLALS 14 (179)
T PF15240_consen 1 MLLVLLSVALLALS 14 (179)
T ss_pred ChhHHHHHHHHHhh
Confidence 34444444444433
No 375
>PRK10115 protease 2; Provisional
Probab=41.17 E-value=71 Score=31.22 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=38.7
Q ss_pred ccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-EEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 159 INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 159 ~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
.-...++.+++||+ |.++-... +...-.|+.+|..+|+. ...+++.. .++++++|++.||++-
T Consensus 126 ~~~l~~~~~Spdg~~la~~~d~~-------------G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~ 190 (686)
T PRK10115 126 FYTLGGMAITPDNTIMALAEDFL-------------SRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVR 190 (686)
T ss_pred cEEEeEEEECCCCCEEEEEecCC-------------CcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEE
Confidence 44567888999996 44442220 11234788899887762 11222222 5699999999887763
No 376
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=41.01 E-value=3.5e+02 Score=26.35 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=54.5
Q ss_pred cceEEE-cCCCCEEE-EeCCCeEEEEecC-Cc---EEEee-----ecc----CcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 79 PEDVCV-DRNGVLYT-ATRDGWIKRLHKN-GT---WENWK-----LIG----GDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 79 Pe~ia~-d~~G~ly~-~~~~g~I~~~~~~-G~---~~~~~-----~~~----~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
-..+++ .++..+++ +.-|++|+.||-+ |. +..+. ... ..-+ .++.++.|.++|+..-.+.+++.
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY-SLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY-SLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee-eeecCCcceEEEecCcccceEEe
Confidence 344565 44555554 3478999999854 31 11111 011 1234 57777888888887767777776
Q ss_pred -c-CC--ceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 144 -E-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 144 -~-~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
+ .+ ...|....+. .-.+.+++||+-.++.++
T Consensus 199 Dprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 199 DPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS 233 (735)
T ss_pred ccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC
Confidence 3 33 2223222222 457888999977777666
No 377
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=40.91 E-value=3e+02 Score=26.21 Aligned_cols=134 Identities=11% Similarity=0.145 Sum_probs=62.3
Q ss_pred eEEEcC-CCCEEEEeCCCeEEEEecCCc-EEEee--eccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389 81 DVCVDR-NGVLYTATRDGWIKRLHKNGT-WENWK--LIGGDTLLGITTTQEN-EILVCDADKGLLKVT--EEG--VTVLA 151 (239)
Q Consensus 81 ~ia~d~-~G~ly~~~~~g~I~~~~~~G~-~~~~~--~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~--~~g--~~~l~ 151 (239)
++++++ ..+|..++.||+++.|.+.++ ..+|. ...+.|+ -+.+-... .+.+++...+...++ .-+ ..++.
T Consensus 401 ~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pl-svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~ 479 (577)
T KOG0642|consen 401 LLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPL-SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE 479 (577)
T ss_pred eeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcc-eEeeccchhHhhhhhcccccccchhhhhhhheeecc
Confidence 456665 345666677888888776432 22232 2346676 55553222 233344434444444 223 22222
Q ss_pred cccCCcc--ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCCcceEEEcCC
Q 026389 152 SHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKD 228 (239)
Q Consensus 152 ~~~~g~~--~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~pnGia~s~d 228 (239)
....+.+ ....|=++-.+.+.+-|+..- ++.+-.+|-.++++-. .....-.-.|+|+++.
T Consensus 480 s~~~~~~~~~~~in~vVs~~~~~~~~~~he-----------------d~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n 542 (577)
T KOG0642|consen 480 SSASPGPRRYPQINKVVSHPTADITFTAHE-----------------DRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN 542 (577)
T ss_pred ccCCCcccccCccceEEecCCCCeeEeccc-----------------CCceecccccccccchheeeccceecceeecCC
Confidence 2221111 123344444555555555432 3455556655554311 1112233466777766
Q ss_pred CCEE
Q 026389 229 EDYL 232 (239)
Q Consensus 229 g~~l 232 (239)
|-+|
T Consensus 543 g~~l 546 (577)
T KOG0642|consen 543 GPYL 546 (577)
T ss_pred CceE
Confidence 6544
No 378
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=40.79 E-value=2.2e+02 Score=24.01 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=48.1
Q ss_pred eEEEcCCC--CEEEEe-CCCeE--EEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCC---CeE--EEc-cCC-
Q 026389 81 DVCVDRNG--VLYTAT-RDGWI--KRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADK---GLL--KVT-EEG- 146 (239)
Q Consensus 81 ~ia~d~~G--~ly~~~-~~g~I--~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~---g~~--~v~-~~g- 146 (239)
++|+|++| -||.+. .+|.| -++|++ -++ ++|.....++..|-+|---|-||+.+... ..+ .+| ..+
T Consensus 127 D~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~ 206 (250)
T PF02191_consen 127 DFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGK 206 (250)
T ss_pred EEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCc
Confidence 68899887 355544 34444 467763 232 44443333322155565568999998664 222 234 233
Q ss_pred ceEEecccCCccccccccEEEcCC-CCEEEEe
Q 026389 147 VTVLASHVNGSRINLADDLIAATD-GSIYFSV 177 (239)
Q Consensus 147 ~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td 177 (239)
.+.+.-.+. .+.....-|..+|. ..||+=|
T Consensus 207 ~~~~~i~f~-~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 207 EEDVSIPFP-NPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eeceeeeec-cccCceEeeeECCCCCeEEEEE
Confidence 211111111 23334556666664 3566655
No 379
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=40.71 E-value=2.2e+02 Score=24.09 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=12.2
Q ss_pred ccEEEcCCCCEEEEe
Q 026389 163 DDLIAATDGSIYFSV 177 (239)
Q Consensus 163 n~l~vd~dG~iy~td 177 (239)
.++.|++||.|+..+
T Consensus 152 ~~~~i~~dG~i~~~~ 166 (260)
T PRK12817 152 NNFTVDEDGGISVKN 166 (260)
T ss_pred CceEECCCCeEEEec
Confidence 479999999997744
No 380
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=40.63 E-value=2.8e+02 Score=25.16 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=37.3
Q ss_pred CCcce--EEEcC--CCCEEEEeCCCeEEEEec-CCcEEEee----eccCcCccCeEEcCCC-CEEEEeCCCCeEEEc
Q 026389 77 NGPED--VCVDR--NGVLYTATRDGWIKRLHK-NGTWENWK----LIGGDTLLGITTTQEN-EILVCDADKGLLKVT 143 (239)
Q Consensus 77 ~gPe~--ia~d~--~G~ly~~~~~g~I~~~~~-~G~~~~~~----~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~ 143 (239)
.+-|| +.|+| .|+|.+|+-.+.|+.+.+ +|.|.+=. .....-- +|.+.+.. .++.+-+-.|.+++.
T Consensus 210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-DLqWSptE~~vfaScS~DgsIrIW 285 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVE-DLQWSPTEDGVFASCSCDGSIRIW 285 (440)
T ss_pred cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchh-hhccCCccCceEEeeecCceEEEE
Confidence 34454 55555 788888887778888775 57665311 1111223 56665444 455544445666664
No 381
>PRK13615 lipoprotein LpqB; Provisional
Probab=40.55 E-value=3.4e+02 Score=26.00 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=70.9
Q ss_pred CcceEEEcCCCCEEEEe-CCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeE-EEc-cCC-ceEE-e
Q 026389 78 GPEDVCVDRNGVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLL-KVT-EEG-VTVL-A 151 (239)
Q Consensus 78 gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~-~v~-~~g-~~~l-~ 151 (239)
.|+++++.++|..+... .++ .+.+.+.| ....+.. +..++.-.+|.+|.+|+.+.+.... ... .+| ...+ .
T Consensus 335 ~~~s~avS~dg~~~A~v~~~~-~l~vg~~~~~~~~~~~--~~~Lt~PS~d~~g~vWtv~~g~~~~l~~~~~~G~~~~v~v 411 (557)
T PRK13615 335 QADAATLSADGRQAAVRNASG-VWSVGDGDRDAVLLDT--RPGLVAPSLDAQGYVWSTPASDPRGLVAWGPDGVGHPVAV 411 (557)
T ss_pred ccccceEcCCCceEEEEcCCc-eEEEecCCCcceeecc--CCccccCcCcCCCCEEEEeCCCceEEEEecCCCceEEeec
Confidence 35677888888776444 344 34443333 3322221 2212144578889999987655422 222 456 3222 2
Q ss_pred cccCCccccccccEEEcCCC-CEE-EEeCCCCcCcccccccceeecCCceEEEEeCCC--CeE----EEecCCCCCcceE
Q 026389 152 SHVNGSRINLADDLIAATDG-SIY-FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NET----SILLDSLFFANGV 223 (239)
Q Consensus 152 ~~~~g~~~~~pn~l~vd~dG-~iy-~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~--~~~----~~~~~~l~~pnGi 223 (239)
....+ .....+.+++|| ++- +.+...+- +- . -+.|.| + .+ ..+ +.+...+..+..+
T Consensus 412 ~~~~~---~~I~~lrvSrDG~R~Avi~~~~g~~--~V----~-----va~V~R-~-~~~P~~L~~~p~~l~~~l~~v~sl 475 (557)
T PRK13615 412 SWTAT---GRVVSLEVARDGARVLVQLETGAGP--QL----L-----VASIVR-D-GGVPTSLTTTPLELLASPGTPLDA 475 (557)
T ss_pred cccCC---CeeEEEEeCCCccEEEEEEecCCCC--EE----E-----EEEEEe-C-CCcceEeeeccEEcccCcCcceee
Confidence 22222 246889999999 554 34422100 00 0 123444 2 21 022 2233456678888
Q ss_pred EEcCCCCEEEEE
Q 026389 224 ALSKDEDYLVVC 235 (239)
Q Consensus 224 a~s~dg~~lyva 235 (239)
++..+++.+.+.
T Consensus 476 ~W~~~~~laVl~ 487 (557)
T PRK13615 476 TWVDELDVATLT 487 (557)
T ss_pred EEcCCCEEEEEe
Confidence 888887755554
No 382
>COG3308 Predicted membrane protein [Function unknown]
Probab=40.47 E-value=43 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCcccchhhhh-HHHHHHHHHHHHHhhccCCCcc
Q 026389 1 MTPSSNPPPTTGSSSKRCVPVCS-GIVLSCLLAFTLQIFFFSPISP 45 (239)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p 45 (239)
||.+++|. .|-++..|.++ +-++++++.++..-++-+|..|
T Consensus 1 m~t~~~p~----qpr~a~~r~lalgs~iaLi~liL~weL~lap~~~ 42 (131)
T COG3308 1 MTTSSIPM----QPRTATARLLALGSLIALIILILSWELWLAPLRP 42 (131)
T ss_pred CCCCccCC----ChhHHHHHHHHHhhHHHHHHHHHHHHHHcCcCCC
Confidence 78888887 45566666666 4444444444555455554443
No 383
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=40.36 E-value=52 Score=29.08 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=28.7
Q ss_pred cccccEEEcCCC---CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-----eEEEecCC---CCCcceEEEcCC
Q 026389 160 NLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-----ETSILLDS---LFFANGVALSKD 228 (239)
Q Consensus 160 ~~pn~l~vd~dG---~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-----~~~~~~~~---l~~pnGia~s~d 228 (239)
..|.-++.+.|| .+|+.|.. |.|||+|..+. .++.+..+ +...=.+...++
T Consensus 208 ~~~~~~D~d~DG~~D~vYaGDl~------------------GnlwR~dl~~~~~~~~~~~~~~~g~~PIt~aP~v~~~~~ 269 (335)
T PF05567_consen 208 SSPAVVDSDGDGYVDRVYAGDLG------------------GNLWRFDLSSANPSSWSVRTIFSGTQPITAAPAVVRDPD 269 (335)
T ss_dssp EEEEEE-TTSSSEE-EEEEEETT------------------SEEEEEE--TTSTT-GG-EESGGG-----S--EEEE-TT
T ss_pred cccEEEeccCCCeEEEEEEEcCC------------------CcEEEEECCCCCcccceeeecccCcCCeEecceEEecCC
Confidence 344444455666 57888864 89999998642 22333222 222224566677
Q ss_pred CCEEEE
Q 026389 229 EDYLVV 234 (239)
Q Consensus 229 g~~lyv 234 (239)
+++||+
T Consensus 270 ~~~V~f 275 (335)
T PF05567_consen 270 GRWVFF 275 (335)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 776554
No 384
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.05 E-value=2.7e+02 Score=24.67 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=66.6
Q ss_pred CCCeEEEEecC-C-cEEEeeeccCcCccCeEEcC--CC-CEEEEeCC-CCeEEEc-c--CCc--eEEecccCCccccccc
Q 026389 95 RDGWIKRLHKN-G-TWENWKLIGGDTLLGITTTQ--EN-EILVCDAD-KGLLKVT-E--EGV--TVLASHVNGSRINLAD 163 (239)
Q Consensus 95 ~~g~I~~~~~~-G-~~~~~~~~~~~p~~Gl~~d~--~G-~L~v~d~~-~g~~~v~-~--~g~--~~l~~~~~g~~~~~pn 163 (239)
-.++|+.|... . +.....+....|. |+..-. .+ .++++-.. .|-+++- - +.. ..++.. .. ....
T Consensus 111 l~~~I~VytF~~n~k~l~~~et~~NPk-GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~---s~Ia 185 (346)
T KOG2111|consen 111 LENKIYVYTFPDNPKLLHVIETRSNPK-GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HD---SDIA 185 (346)
T ss_pred ecCeEEEEEcCCChhheeeeecccCCC-ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-cc---Ccee
Confidence 35677777643 2 2222345566788 876542 22 34544322 3555553 1 111 111111 11 1234
Q ss_pred cEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEE-EeCCCCeE-EEecCCCCCc--ceEEEcCCCCEEEEE
Q 026389 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK-YDPSLNET-SILLDSLFFA--NGVALSKDEDYLVVC 235 (239)
Q Consensus 164 ~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~-~d~~~~~~-~~~~~~l~~p--nGia~s~dg~~lyva 235 (239)
=++...+|.+..|.+. .|.|.| ||..+|+. ..+.+|...+ .-|+||||.++|-|+
T Consensus 186 cv~Ln~~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 186 CVALNLQGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred EEEEcCCccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE
Confidence 4677788999888776 588877 67666554 4455554443 579999999987665
No 385
>PHA03098 kelch-like protein; Provisional
Probab=39.86 E-value=3.1e+02 Score=25.46 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=52.9
Q ss_pred CCCEEEEe-CC------CeEEEEec-CCcEEEeeecc-CcCccCeEEcCCCCEEEEeCCCC------eEEEcc-CC-ceE
Q 026389 87 NGVLYTAT-RD------GWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDADKG------LLKVTE-EG-VTV 149 (239)
Q Consensus 87 ~G~ly~~~-~~------g~I~~~~~-~G~~~~~~~~~-~~p~~Gl~~d~~G~L~v~d~~~g------~~~v~~-~g-~~~ 149 (239)
++.||+.. .+ ..++++|+ +++|....... .+-..+++. -+|+||+.-...+ +...+. ++ -+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 56777532 11 36788886 34565433211 121103333 4678998754321 223332 22 222
Q ss_pred EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389 150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214 (239)
Q Consensus 150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~ 214 (239)
+.. . +...-+..++.-+|.||+....... ......+++||+.+++-+.+.
T Consensus 373 ~~~-l---p~~r~~~~~~~~~~~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 373 EPP-L---IFPRYNPCVVNVNNLIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CCC-c---CcCCccceEEEECCEEEEECCcCCC-----------CcccceEEEEeCCCCeeeecC
Confidence 111 1 1111122233346899987543111 011357899999887766553
No 386
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.15 E-value=2.6e+02 Score=23.98 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=42.3
Q ss_pred ceEEEcC-CCCEEEEeCCCeEEEEec-CCcEEEeee-ccCcCccCeEE-cCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389 80 EDVCVDR-NGVLYTATRDGWIKRLHK-NGTWENWKL-IGGDTLLGITT-TQENEILVCDADKGLLKVT--EEG--VTVL 150 (239)
Q Consensus 80 e~ia~d~-~G~ly~~~~~g~I~~~~~-~G~~~~~~~-~~~~p~~Gl~~-d~~G~L~v~d~~~g~~~v~--~~g--~~~l 150 (239)
..+.+|| .+.|+++..|+.|+.+|. +|+++.... ....-+ .++. ..++.++-. +..|.+++. ..+ ++++
T Consensus 118 Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG-~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSG-AEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeec-CCCccEEEEeccccceeEEe
Confidence 3678886 678888889999999995 787754322 122233 3443 345566544 346777775 444 4444
No 387
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=37.76 E-value=75 Score=18.92 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.2
Q ss_pred CeEEcCCCCEEEEeCCCCeEEEc
Q 026389 121 GITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 121 Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
++.+. .+.+||++...|+.-+|
T Consensus 6 ~v~v~-g~yaYva~~~~Gl~IvD 27 (42)
T PF08309_consen 6 DVAVS-GNYAYVADGNNGLVIVD 27 (42)
T ss_pred EEEEE-CCEEEEEeCCCCEEEEE
Confidence 56663 45799999889998888
No 388
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=37.41 E-value=65 Score=27.30 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=11.0
Q ss_pred ccEEEcCCCCEEE
Q 026389 163 DDLIAATDGSIYF 175 (239)
Q Consensus 163 n~l~vd~dG~iy~ 175 (239)
.++.|++||+|+.
T Consensus 154 ~~i~i~~dG~i~~ 166 (256)
T PRK12818 154 GKFSTDADGNISL 166 (256)
T ss_pred CCceECCCCeEEE
Confidence 3799999999966
No 389
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=36.52 E-value=2.1e+02 Score=28.32 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=51.5
Q ss_pred CeEEcCCCCEEEEeCCCCeEEE-c-cCC--ceEEecc--cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceee
Q 026389 121 GITTTQENEILVCDADKGLLKV-T-EEG--VTVLASH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194 (239)
Q Consensus 121 Gl~~d~~G~L~v~d~~~g~~~v-~-~~g--~~~l~~~--~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~ 194 (239)
.|++|+.-++.++--..+-+++ + .+| ++.+... .+| .+--+..||.|....|.-+
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG----~lIKv~lDPSgiY~atScs--------------- 661 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG----DLIKVILDPSGIYLATSCS--------------- 661 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC----ceEEEEECCCccEEEEeec---------------
Confidence 5777766655544333333444 3 566 3444321 223 2445778888865566544
Q ss_pred cCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCCCCEEE
Q 026389 195 KPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLV 233 (239)
Q Consensus 195 ~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~dg~~ly 233 (239)
+..|..||--+|+...-..| -.-..|+-|.+|=+.|.
T Consensus 662 --dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 662 --DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred --CCceEEEEeccchhhhhhcCcchheeeeeecccchhhe
Confidence 34677888777775433333 23457788877766553
No 390
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=36.10 E-value=83 Score=26.82 Aligned_cols=14 Identities=7% Similarity=0.335 Sum_probs=11.7
Q ss_pred ccEEEcCCCCEEEE
Q 026389 163 DDLIAATDGSIYFS 176 (239)
Q Consensus 163 n~l~vd~dG~iy~t 176 (239)
..+.|++||.|+..
T Consensus 149 ~~i~I~~dG~I~~~ 162 (264)
T PRK12816 149 NSITISEEGIVSVK 162 (264)
T ss_pred ccEEECCCCeEEEe
Confidence 47999999999774
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.93 E-value=90 Score=29.57 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=41.3
Q ss_pred eEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 81 DVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 81 ~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
+++-..+|.|.+++.+|.|..|+.-|. .++..+..|.|..++.+..+|+-++|....-++.++
T Consensus 435 c~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 435 CFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred eeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 456667888999999999998887553 223234445555477777889866665544454443
No 392
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=35.76 E-value=1e+02 Score=20.93 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=21.7
Q ss_pred EEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389 165 LIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (239)
Q Consensus 165 l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~ 213 (239)
+-+|++ |+.|+-|.-- . ..-| .-||+.||+-..+
T Consensus 10 vL~DP~SG~Yy~vd~P~--Q------------p~~k-~lfDPETGqYVeV 44 (75)
T PF15232_consen 10 VLQDPESGQYYVVDAPV--Q------------PKTK-TLFDPETGQYVEV 44 (75)
T ss_pred EeecCCCCCEEEEecCC--C------------ccee-eeecCCCCcEEEE
Confidence 567776 8999988761 1 1112 3489999885433
No 393
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=34.61 E-value=25 Score=32.47 Aligned_cols=37 Identities=16% Similarity=0.411 Sum_probs=22.7
Q ss_pred EeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEecCC
Q 026389 70 RLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG 106 (239)
Q Consensus 70 ~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G 106 (239)
..+.+.+.-|.++.+|+||..|+++ ..+++.++++.+
T Consensus 460 ~~g~~~fylphgl~~dkdgf~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 460 SSGKNLFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred hccCCceecCCcceecCCCcEEeecccchhhhhccccc
Confidence 3344556667777777777777665 555666665543
No 394
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=34.29 E-value=3.3e+02 Score=24.14 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=43.9
Q ss_pred cceEEEcCCC-CEEEEeCCCeEEEEec--CCcEE---EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 79 PEDVCVDRNG-VLYTATRDGWIKRLHK--NGTWE---NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 79 Pe~ia~d~~G-~ly~~~~~g~I~~~~~--~G~~~---~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
-.+|.|.+.. +|.+++.|..-+.+.. +|++. ++........ ++...+.++.++.-++.+++.+-
T Consensus 58 vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt-~V~WsP~enkFAVgSgar~isVc 127 (361)
T KOG1523|consen 58 VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAAT-CVKWSPKENKFAVGSGARLISVC 127 (361)
T ss_pred eeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEecccee-eEeecCcCceEEeccCccEEEEE
Confidence 3457888754 7888877766666664 55543 2233334455 88999999999998888887764
No 395
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=34.14 E-value=3e+02 Score=23.59 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=28.3
Q ss_pred cccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389 158 RINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS 216 (239)
Q Consensus 158 ~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~ 216 (239)
+.--.|.+.+||. +.|+++.. .+.+|.+|..+|+++....+
T Consensus 113 evPeINam~ldP~enSi~~AgG------------------D~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAGG------------------DGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred cCCccceeEeccCCCcEEEecC------------------CeEEEEEEecCCEEEEEEcC
Confidence 3445789999975 67877753 46778888777777655443
No 396
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=34.11 E-value=1.7e+02 Score=21.99 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.4
Q ss_pred CeEEcCCC
Q 026389 121 GITTTQEN 128 (239)
Q Consensus 121 Gl~~d~~G 128 (239)
|..+.++.
T Consensus 95 g~tv~P~d 102 (128)
T COG3111 95 GQTVTPKD 102 (128)
T ss_pred CcccCccc
Confidence 44444443
No 397
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.05 E-value=3.8e+02 Score=24.74 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=34.9
Q ss_pred CcceEEEcCCC--CEEEEeCCCeEEEEec--CCc--EEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc
Q 026389 78 GPEDVCVDRNG--VLYTATRDGWIKRLHK--NGT--WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT 143 (239)
Q Consensus 78 gPe~ia~d~~G--~ly~~~~~g~I~~~~~--~G~--~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~ 143 (239)
.-|-++|++.. .++++..+|+++-+|. .|+ ++.-+. ..+.+||.+...- .+.++.+..+.+++.
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH--d~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH--DDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec--cCCcceEEecCCCCcceeeccccceEEEE
Confidence 45667777633 3335557788888774 333 222122 1233377776433 566666666666654
No 398
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.71 E-value=1.5e+02 Score=28.08 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=31.1
Q ss_pred CceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 197 ~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
.|.|..||...+ ++........|+-+++.|+|..+.|++.
T Consensus 280 DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 280 DGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred CCeEEEEEcCCC-eeeeeeecccceEEEEcCCCcEEEEEcC
Confidence 588999998755 4455555567999999999998888764
No 399
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.57 E-value=5.4e+02 Score=26.33 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=75.0
Q ss_pred eEEEcCCCCEEEEeC----CCeEEEEecCCcEE-Eee----eccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEE
Q 026389 81 DVCVDRNGVLYTATR----DGWIKRLHKNGTWE-NWK----LIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVL 150 (239)
Q Consensus 81 ~ia~d~~G~ly~~~~----~g~I~~~~~~G~~~-~~~----~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l 150 (239)
.++|-|.|++..+.. ...|.-|..+|-.+ .|. ....... .|.++.|+.++..--. ..+.+..-+ ..+.
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~-~l~Wn~ds~iLAv~~~-~~vqLWt~~NYHWY 338 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVI-ELAWNSDSEILAVWLE-DRVQLWTRSNYHWY 338 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceee-EEEECCCCCEEEEEec-CCceEEEeeCCEEE
Confidence 489999999987762 35677777777432 121 1233456 8899999876655332 225554222 2222
Q ss_pred ecc---c-CCccccccccEEEcCCC--CEEEEeCCCCcCccccccccee-----ecCCceEEEEeCCCCeEEEecCC---
Q 026389 151 ASH---V-NGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLE-----AKPHGKLLKYDPSLNETSILLDS--- 216 (239)
Q Consensus 151 ~~~---~-~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~~~~e-----~~~~g~v~~~d~~~~~~~~~~~~--- 216 (239)
.+. + ... ....+..|++- ++++...+..+...+|..++.. ....|.+.++|.+.-.++.+...
T Consensus 339 LKqei~~~~~~---~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP 415 (928)
T PF04762_consen 339 LKQEIRFSSSE---SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP 415 (928)
T ss_pred EEEEEEccCCC---CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence 111 1 111 12237777752 5655554333333333322221 12357788888654333333221
Q ss_pred ----------CCCcceEEEcCCCCE
Q 026389 217 ----------LFFANGVALSKDEDY 231 (239)
Q Consensus 217 ----------l~~pnGia~s~dg~~ 231 (239)
-...+.++|++++..
T Consensus 416 PPMs~~~l~~~~~v~~vaf~~~~~~ 440 (928)
T PF04762_consen 416 PPMSSYELELPSPVNDVAFSPSNSR 440 (928)
T ss_pred chHhceEEcCCCCcEEEEEeCCCCe
Confidence 123477788777653
No 400
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=33.45 E-value=2.5e+02 Score=26.31 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=69.3
Q ss_pred CCEEEEeCCCeEEE--EecCCcE---EEeeeccCcCccCeEEcCCC--CEEEEeCCCCeEEEc-cCC--ceEEecccCC-
Q 026389 88 GVLYTATRDGWIKR--LHKNGTW---ENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EEG--VTVLASHVNG- 156 (239)
Q Consensus 88 G~ly~~~~~g~I~~--~~~~G~~---~~~~~~~~~p~~Gl~~d~~G--~L~v~d~~~g~~~v~-~~g--~~~l~~~~~g- 156 (239)
..|.++..+|++.. +...|.. .......+..+ =++++++- .+|-|....-...+| ..+ .+.+......
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vh-klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVH-KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccc-eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence 34555556776644 3344432 23344556666 77777655 466666555566677 333 3444332222
Q ss_pred ccccccccEEEcCCCCEEEEeCCC-CcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389 157 SRINLADDLIAATDGSIYFSVAST-KFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 157 ~~~~~pn~l~vd~dG~iy~td~~~-~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
......+.++++|.-.-+|+-... .|....-...+-+...+|-+-.+-|.. .+-+......|++++.++.-|+++
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h----l~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH----LVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc----ccccCcccceeEEecCCccceeee
Confidence 112367899999987545543331 121100001111111223233333321 111344556788888777655543
No 401
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=33.17 E-value=76 Score=28.43 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=48.7
Q ss_pred eEEEcCCCCEEEEeCCCeEEEEecCCcE-EEe--eeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecc
Q 026389 81 DVCVDRNGVLYTATRDGWIKRLHKNGTW-ENW--KLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASH 153 (239)
Q Consensus 81 ~ia~d~~G~ly~~~~~g~I~~~~~~G~~-~~~--~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~ 153 (239)
++.|. +|-+.+++.|..|..|+-+... .+. .-.+.+.. =-.+|-+.+++|+.++.+.+++. ..+ ++++...
T Consensus 282 hlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa-VNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 282 HLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred EEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh-eeeeccccceEEEecCCceEEEEeccceeeehhhhcc
Confidence 34443 5666677778777777643211 000 00111111 11344456788888888888886 344 5555322
Q ss_pred cCCccccccccEEEcC-CCCEEEEeCCC
Q 026389 154 VNGSRINLADDLIAAT-DGSIYFSVAST 180 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~-dG~iy~td~~~ 180 (239)
-.|++... +|++.++.++.
T Consensus 360 --------kRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 360 --------KRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred --------cccceehhccCeEEEecCCC
Confidence 23566665 57888887663
No 402
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=32.95 E-value=1e+02 Score=26.04 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=11.2
Q ss_pred cEEEcCCCCEEEE
Q 026389 164 DLIAATDGSIYFS 176 (239)
Q Consensus 164 ~l~vd~dG~iy~t 176 (239)
.+.|++||.|+..
T Consensus 146 ~~~I~~dG~i~~~ 158 (259)
T TIGR02488 146 SITVGSDGEVSVR 158 (259)
T ss_pred eEEECCCCeEEEe
Confidence 6999999999774
No 403
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=32.77 E-value=5.3e+02 Score=25.97 Aligned_cols=85 Identities=8% Similarity=0.066 Sum_probs=50.6
Q ss_pred EEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC--ce-EEecccCCcccccc
Q 026389 90 LYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VT-VLASHVNGSRINLA 162 (239)
Q Consensus 90 ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g--~~-~l~~~~~g~~~~~p 162 (239)
+-+|..+|+|+.++- .++ +..|...-++.. .+.|..||+ +.++....|.+.+. .++ .. ++...- ...+
T Consensus 217 VaiG~~~G~ViifNlK~dkil~sFk~d~g~Vt-slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah----~~sv 291 (910)
T KOG1539|consen 217 VAIGLENGTVIIFNLKFDKILMSFKQDWGRVT-SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH----YGSV 291 (910)
T ss_pred EEEeccCceEEEEEcccCcEEEEEEcccccee-EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc----cCCc
Confidence 335667888888774 343 455555457777 899988896 55555556766664 344 22 222111 2346
Q ss_pred ccEEEcCCCCEEEEeCC
Q 026389 163 DDLIAATDGSIYFSVAS 179 (239)
Q Consensus 163 n~l~vd~dG~iy~td~~ 179 (239)
++..+-+..-+.+|...
T Consensus 292 ~~~~fl~~epVl~ta~~ 308 (910)
T KOG1539|consen 292 TGATFLPGEPVLVTAGA 308 (910)
T ss_pred ccceecCCCceEeeccC
Confidence 67777776677777544
No 404
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=32.15 E-value=2e+02 Score=28.11 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=48.7
Q ss_pred CEEEEeCCCeEEEEecCCcE-EEeeecc--CcCccCeEEcCCCCEEEEeCCCCeEEEcc--CC---ceEEecccCCcccc
Q 026389 89 VLYTATRDGWIKRLHKNGTW-ENWKLIG--GDTLLGITTTQENEILVCDADKGLLKVTE--EG---VTVLASHVNGSRIN 160 (239)
Q Consensus 89 ~ly~~~~~g~I~~~~~~G~~-~~~~~~~--~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g---~~~l~~~~~g~~~~ 160 (239)
.|-+|+..|.++-++..+.. ......+ +..- -+.+..+..+.++....|.+.+.. .+ ...+....+..--.
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~ 125 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKC 125 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCc
Confidence 34456666777766654422 1111111 1111 233445556666666677777651 22 23333333322224
Q ss_pred ccccEEEcCCC-CEEEEeCCCC
Q 026389 161 LADDLIAATDG-SIYFSVASTK 181 (239)
Q Consensus 161 ~pn~l~vd~dG-~iy~td~~~~ 181 (239)
....+..++|| ++|.+|...+
T Consensus 126 rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred eEEEEEecccccEEeecCCCce
Confidence 57788999999 7999998743
No 405
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.76 E-value=3.3e+02 Score=23.33 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=47.7
Q ss_pred CEEEEeCCCeEEEEe--cCCcEEEeeeccCc--CccCeEEc--CCCCEEEEeCCCCeEEEc--cCC-ceEEecccCCccc
Q 026389 89 VLYTATRDGWIKRLH--KNGTWENWKLIGGD--TLLGITTT--QENEILVCDADKGLLKVT--EEG-VTVLASHVNGSRI 159 (239)
Q Consensus 89 ~ly~~~~~g~I~~~~--~~G~~~~~~~~~~~--p~~Gl~~d--~~G~L~v~d~~~g~~~v~--~~g-~~~l~~~~~g~~~ 159 (239)
+|-+++.|+.|..+. .+|+........|+ |.--+++. +-|.++..-++.|.+-+. .+| -+....... --
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~--h~ 102 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA--HS 102 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh--hc
Confidence 566777888776665 34542222222222 21034443 468888888888877776 355 222211111 11
Q ss_pred cccccEEEcCCC--CEEEEeCC
Q 026389 160 NLADDLIAATDG--SIYFSVAS 179 (239)
Q Consensus 160 ~~pn~l~vd~dG--~iy~td~~ 179 (239)
...|.++.+|.+ -+.+..++
T Consensus 103 ~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred ccceeecccccccceEEEEeeC
Confidence 357899999874 44444443
No 406
>PHA02790 Kelch-like protein; Provisional
Probab=31.53 E-value=4.2e+02 Score=24.48 Aligned_cols=108 Identities=9% Similarity=0.041 Sum_probs=53.0
Q ss_pred CCCEEEEe-CC-----CeEEEEecC-CcEEEeeec-cCcCccCeEEcCCCCEEEEeCCCC---eEEEcc-CC-ceEEecc
Q 026389 87 NGVLYTAT-RD-----GWIKRLHKN-GTWENWKLI-GGDTLLGITTTQENEILVCDADKG---LLKVTE-EG-VTVLASH 153 (239)
Q Consensus 87 ~G~ly~~~-~~-----g~I~~~~~~-G~~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g---~~~v~~-~g-~~~l~~~ 153 (239)
++.||+.. .+ ..++++|+. ++|...... ..+...+++. -+|.||+.-...+ +-+.++ .+ -+.+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~- 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS- 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCC-
Confidence 46777543 22 357889873 455443321 1222203333 5789999864322 223332 22 121111
Q ss_pred cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389 154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL 213 (239)
Q Consensus 154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~ 213 (239)
. +....+-.++.-+|.||+...... ....+.+|||.+.+-+.+
T Consensus 349 l---~~~r~~~~~~~~~g~IYviGG~~~--------------~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 349 L---LKPRCNPAVASINNVIYVIGGHSE--------------TDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred C---CCCCcccEEEEECCEEEEecCcCC--------------CCccEEEEeCCCCEEEeC
Confidence 1 111122234445789999765310 013577899987776554
No 407
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=31.52 E-value=2.4e+02 Score=25.23 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=36.8
Q ss_pred cccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389 162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236 (239)
Q Consensus 162 pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad 236 (239)
...+...|||+=..+-+. | .-|+-++...+.+...+--.-..-.|++|.+||++.-+++
T Consensus 94 ls~~~WSPdgrhiL~tse--F--------------~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSE--F--------------DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred ceeeeECCCcceEeeeec--c--------------eeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence 456778899953333322 3 2466666666665555443344458999999999765553
No 408
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=31.26 E-value=1.3e+02 Score=25.50 Aligned_cols=14 Identities=7% Similarity=0.339 Sum_probs=11.5
Q ss_pred ccEEEcCCCCEEEE
Q 026389 163 DDLIAATDGSIYFS 176 (239)
Q Consensus 163 n~l~vd~dG~iy~t 176 (239)
..+.|++||.|+..
T Consensus 147 ~~i~I~~dG~I~~~ 160 (262)
T PRK12692 147 TQVTINESGQVFAK 160 (262)
T ss_pred cceEECCCCEEEEe
Confidence 37999999999764
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=30.64 E-value=1.3e+02 Score=18.29 Aligned_cols=28 Identities=18% Similarity=-0.047 Sum_probs=20.4
Q ss_pred ceEEEcCCCCEE-EEeCCCeEEEEecCCc
Q 026389 80 EDVCVDRNGVLY-TATRDGWIKRLHKNGT 107 (239)
Q Consensus 80 e~ia~d~~G~ly-~~~~~g~I~~~~~~G~ 107 (239)
+.+.|.|...|+ ++..+|+|+.+..+++
T Consensus 15 ~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 15 SCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 367888887766 6778998877765554
No 410
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.35 E-value=1e+02 Score=24.08 Aligned_cols=6 Identities=17% Similarity=0.678 Sum_probs=4.1
Q ss_pred CEEEEe
Q 026389 172 SIYFSV 177 (239)
Q Consensus 172 ~iy~td 177 (239)
++|||+
T Consensus 153 ~VlFt~ 158 (162)
T PRK07021 153 DVLFTA 158 (162)
T ss_pred EEeeee
Confidence 577776
No 411
>PHA03283 envelope glycoprotein E; Provisional
Probab=30.22 E-value=78 Score=29.74 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=15.8
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhccC
Q 026389 15 SKRCVPVCSGIVLSCLLAFTLQIFFFS 41 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (239)
.++.++.+..+.+++++++..+..|.|
T Consensus 396 ~~~~l~~~~~~~~~~~~~~~~l~vw~c 422 (542)
T PHA03283 396 TRHYLAFLLAIICTCAALLVALVVWGC 422 (542)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhhhe
Confidence 577777666555555555555545544
No 412
>PRK03427 cell division protein ZipA; Provisional
Probab=30.18 E-value=45 Score=29.53 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.5
Q ss_pred hhhhhHHH-HHHHHHHHHHhhccC
Q 026389 19 VPVCSGIV-LSCLLAFTLQIFFFS 41 (239)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~ 41 (239)
+|..++++ ++||+|++++-||++
T Consensus 5 LrLiLivvGAIAIiAlL~HGlWts 28 (333)
T PRK03427 5 LRLILIIVGAIAIIALLVHGFWTS 28 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhc
Confidence 56666555 678889999999986
No 413
>PHA03098 kelch-like protein; Provisional
Probab=29.83 E-value=4.6e+02 Score=24.35 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCCEEEEe---CC----CeEEEEecC-CcEEEeeecc-CcCccCeEEcCCCCEEEEeCCC---------CeEEEcc-CC-
Q 026389 87 NGVLYTAT---RD----GWIKRLHKN-GTWENWKLIG-GDTLLGITTTQENEILVCDADK---------GLLKVTE-EG- 146 (239)
Q Consensus 87 ~G~ly~~~---~~----g~I~~~~~~-G~~~~~~~~~-~~p~~Gl~~d~~G~L~v~d~~~---------g~~~v~~-~g- 146 (239)
+|.||+.. .+ ..+.++|+. ++|+...... .+-. .-++-.+|+|||..... .+...|+ .+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 57888532 11 457888874 4565433211 1111 12222467899975421 1334453 33
Q ss_pred ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC
Q 026389 147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD 215 (239)
Q Consensus 147 ~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~ 215 (239)
-+.+... . .+.... .++ .-+|.||+...... . .....+++||+++++-+.+..
T Consensus 468 W~~~~~~-~-~~r~~~-~~~-~~~~~iyv~GG~~~---~---------~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 468 WTELSSL-N-FPRINA-SLC-IFNNKIYVVGGDKY---E---------YYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred eeeCCCC-C-cccccc-eEE-EECCEEEEEcCCcC---C---------cccceeEEEeCCCCEEEecCC
Confidence 2222211 1 111111 222 23788998754310 0 013579999999887765543
No 414
>PF11161 DUF2944: Protein of unknown function (DUF2946); InterPro: IPR021332 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=29.73 E-value=1.3e+02 Score=24.38 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=31.4
Q ss_pred CEEEEe-CCCeEEEEecC---CcEEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 89 VLYTAT-RDGWIKRLHKN---GTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 89 ~ly~~~-~~g~I~~~~~~---G~~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
++||.. ..-.|+|+++. ..+.+.... ...+. ++-+|.+|+||.... .|+-.++
T Consensus 76 RVYV~Le~tP~v~Rl~~~~~~~~l~thTg~~~~~~~-~~~lDe~G~l~l~t~-~g~glvh 133 (187)
T PF11161_consen 76 RVYVELEYTPWVWRLQPEGGDLGLVTHTGAPFEAPR-ACWLDEQGRLYLATP-LGVGLVH 133 (187)
T ss_pred EEEEEeccCceEEEeccCCCCCceeecCCCcccchh-heeECCCCCEEEecC-CceEEEe
Confidence 666665 56788888872 233332221 22356 788999999998743 3444443
No 415
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=28.88 E-value=3.3e+02 Score=22.44 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=10.4
Q ss_pred ccccccEEEcCCCCEEE
Q 026389 159 INLADDLIAATDGSIYF 175 (239)
Q Consensus 159 ~~~pn~l~vd~dG~iy~ 175 (239)
..+| .++..+||.|||
T Consensus 260 ~~Y~-~~~~~~dg~l~i 275 (275)
T PF13088_consen 260 SGYP-SLTQLPDGKLYI 275 (275)
T ss_dssp EEEE-EEEEEETTEEEE
T ss_pred EECC-eeEEeCCCcCCC
Confidence 4444 566777787775
No 416
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=28.75 E-value=3.8e+02 Score=23.02 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=27.9
Q ss_pred CCCEEEEe-C-----CCeEEEEec-CCcEEEeeecc--CcCccCeEEcCCCCEEEEeC
Q 026389 87 NGVLYTAT-R-----DGWIKRLHK-NGTWENWKLIG--GDTLLGITTTQENEILVCDA 135 (239)
Q Consensus 87 ~G~ly~~~-~-----~g~I~~~~~-~G~~~~~~~~~--~~p~~Gl~~d~~G~L~v~d~ 135 (239)
++.||+.. . ...++++|+ +.+|+...... .+.. ..++-.+++|||.-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~-~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ-PVCVKLQNELYVFGG 179 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc-ceEEEECCEEEEEcC
Confidence 57888543 1 246888987 45676554322 2333 333335678999754
No 417
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=28.74 E-value=5.9e+02 Score=25.24 Aligned_cols=60 Identities=17% Similarity=0.050 Sum_probs=35.5
Q ss_pred CcceEEEcCCCCEE-EEeCCCeEEEEecCCcEEEeeeccCc---CccCeEEcCC---C---CEEEEeCCC
Q 026389 78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGD---TLLGITTTQE---N---EILVCDADK 137 (239)
Q Consensus 78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~~~~~~~~~~~---p~~Gl~~d~~---G---~L~v~d~~~ 137 (239)
.-.+.+|..||.++ .|..+|+|..-+..|+.....+..|. |..++++.++ | .+-|.|.+.
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q 203 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ 203 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence 34466888888877 56689999776777764433333222 2226666532 2 356666654
No 418
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.68 E-value=5.6e+02 Score=25.03 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=53.1
Q ss_pred CcceEEEcCCCC-EEEEeCCCeEEEEecCCcEE---EeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEccCC----ce
Q 026389 78 GPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWE---NWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTEEG----VT 148 (239)
Q Consensus 78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G~~~---~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~~~g----~~ 148 (239)
.-++|++.|..- +.+++.|-.|..|+=+++|. +|......-+ .++|.|.. +-+++.+-.+.+++..-| .-
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM-qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM-QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE-EEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 456788888653 34555677777777667653 3333333455 77888655 788887777888887322 33
Q ss_pred EEecccCCccccccccEEEcCCC
Q 026389 149 VLASHVNGSRINLADDLIAATDG 171 (239)
Q Consensus 149 ~l~~~~~g~~~~~pn~l~vd~dG 171 (239)
++..... ..|-++.=+.|
T Consensus 178 Tl~gHek-----GVN~Vdyy~~g 195 (794)
T KOG0276|consen 178 TLEGHEK-----GVNCVDYYTGG 195 (794)
T ss_pred eeecccc-----CcceEEeccCC
Confidence 4433222 35666666655
No 419
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=28.60 E-value=1.7e+02 Score=24.51 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=9.7
Q ss_pred cEEEcCCCCEEE
Q 026389 164 DLIAATDGSIYF 175 (239)
Q Consensus 164 ~l~vd~dG~iy~ 175 (239)
.+.+++||+|+.
T Consensus 135 ~~~i~~dG~i~~ 146 (241)
T PRK12642 135 EPTIGADGAIYQ 146 (241)
T ss_pred CceEcCCceEEE
Confidence 688899999854
No 420
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=28.53 E-value=3e+02 Score=23.27 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=11.0
Q ss_pred cEEEcCCCCEEEE
Q 026389 164 DLIAATDGSIYFS 176 (239)
Q Consensus 164 ~l~vd~dG~iy~t 176 (239)
.+.|++||.|+..
T Consensus 149 ~v~I~~dG~I~~~ 161 (257)
T PRK12819 149 KVAVQADGTLYDA 161 (257)
T ss_pred cEEEcCCCEEEEE
Confidence 6999999999774
No 421
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.85 E-value=3.3e+02 Score=27.32 Aligned_cols=43 Identities=16% Similarity=0.343 Sum_probs=31.6
Q ss_pred cCCC-CEEEEeCCCCcCcccccccceee--cCCceEEEEeCCCCeE
Q 026389 168 ATDG-SIYFSVASTKFGLHNWGLDLLEA--KPHGKLLKYDPSLNET 210 (239)
Q Consensus 168 d~dG-~iy~td~~~~~~~~~~~~~~~e~--~~~g~v~~~d~~~~~~ 210 (239)
+++| .+|+.+.+++|.+.+...-++.+ .++|-+|.+++.+|++
T Consensus 485 ~~e~v~l~vqr~~~H~~~d~~~svlf~~k~s~~gvly~fn~~~Gkv 530 (910)
T KOG2103|consen 485 NPEGVKLFVQRTTAHFPLDEDPSVLFVHKGSGNGVLYEFNPITGKV 530 (910)
T ss_pred CcccceEEEEeccccCCCCCCCeEEEEeccCCCeEEEEEecCccee
Confidence 6677 79999999888776644444443 3478999999988865
No 422
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=27.25 E-value=4.1e+02 Score=22.97 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=27.2
Q ss_pred CCCEEEEe--CCCeEEEEec---CCcEEEeeecc--CcCccCeEEcCCCCEEEEeC
Q 026389 87 NGVLYTAT--RDGWIKRLHK---NGTWENWKLIG--GDTLLGITTTQENEILVCDA 135 (239)
Q Consensus 87 ~G~ly~~~--~~g~I~~~~~---~G~~~~~~~~~--~~p~~Gl~~d~~G~L~v~d~ 135 (239)
++.||+.. ....+++++. ..+|....... .+-..+++. -+++|||.-.
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~~~~iYv~GG 71 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-IDGKLYVFGG 71 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE-ECCEEEEEeC
Confidence 57899743 3356888884 24565544322 222203443 4689999864
No 423
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=26.19 E-value=5.7e+02 Score=26.90 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=26.3
Q ss_pred CceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389 197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237 (239)
Q Consensus 197 ~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt 237 (239)
.|.+...|+.+..++.+-..-.....+++|||++++.+...
T Consensus 89 ~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 89 LGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred CCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 47788888887766655432223344668889887766543
No 424
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=25.43 E-value=1.5e+02 Score=27.73 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=15.8
Q ss_pred CCCcceEEEcCCCCEEEEEeCC
Q 026389 217 LFFANGVALSKDEDYLVVCETF 238 (239)
Q Consensus 217 l~~pnGia~s~dg~~lyvadt~ 238 (239)
...|.-+++||.+++|.+-|-+
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e~~g 378 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSEDQG 378 (733)
T ss_pred hcCcceeeeCcccchheeecCC
Confidence 4456778899988888765543
No 425
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=24.55 E-value=1.5e+02 Score=22.48 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCcccchhhhhHHHHH
Q 026389 1 MTPSSNPPPTTGSSSKRCVPVCSGIVLS 28 (239)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (239)
|+..+-|+..++.+.|+-.-+..+++..
T Consensus 1 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 28 (128)
T PRK13717 1 MTTTQKTTDVTAPRRSHWWWTVPGCLAM 28 (128)
T ss_pred CCccccCCcccccchhcchHHHHHHHHH
Confidence 6777778887777777755544444433
No 426
>PRK13615 lipoprotein LpqB; Provisional
Probab=24.50 E-value=6.3e+02 Score=24.19 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=50.8
Q ss_pred CeEEcCCCCEEEEeCCCCeEEEccC-C-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCc
Q 026389 121 GITTTQENEILVCDADKGLLKVTEE-G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG 198 (239)
Q Consensus 121 Gl~~d~~G~L~v~d~~~g~~~v~~~-g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g 198 (239)
.+++..+|+.+++-...+.+.+.+. + ...+. .+..+..| .+|.+|.+|..+... .+
T Consensus 338 s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~---~~~~Lt~P---S~d~~g~vWtv~~g~----------------~~ 395 (557)
T PRK13615 338 AATLSADGRQAAVRNASGVWSVGDGDRDAVLLD---TRPGLVAP---SLDAQGYVWSTPASD----------------PR 395 (557)
T ss_pred cceEcCCCceEEEEcCCceEEEecCCCcceeec---cCCccccC---cCcCCCCEEEEeCCC----------------ce
Confidence 5677788876655444556666643 3 33222 23334444 678889999776541 24
Q ss_pred eEEEEeCCCCeEEEec-CCC--CCcceEEEcCCCCEEEE
Q 026389 199 KLLKYDPSLNETSILL-DSL--FFANGVALSKDEDYLVV 234 (239)
Q Consensus 199 ~v~~~d~~~~~~~~~~-~~l--~~pnGia~s~dg~~lyv 234 (239)
++.+...+ |+...+. +.+ .....+.+|+||-.+.+
T Consensus 396 ~l~~~~~~-G~~~~v~v~~~~~~~I~~lrvSrDG~R~Av 433 (557)
T PRK13615 396 GLVAWGPD-GVGHPVAVSWTATGRVVSLEVARDGARVLV 433 (557)
T ss_pred EEEEecCC-CceEEeeccccCCCeeEEEEeCCCccEEEE
Confidence 56665543 4443322 211 23566788888876643
No 427
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=24.44 E-value=66 Score=18.65 Aligned_cols=14 Identities=29% Similarity=0.055 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHHHH
Q 026389 19 VPVCSGIVLSCLLA 32 (239)
Q Consensus 19 ~~~~~~~~~~~~~~ 32 (239)
||.++++++..+++
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 55555544433333
No 428
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=23.87 E-value=2.5e+02 Score=20.69 Aligned_cols=65 Identities=26% Similarity=0.264 Sum_probs=37.2
Q ss_pred cccccccEEEc--CCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389 158 RINLADDLIAA--TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC 235 (239)
Q Consensus 158 ~~~~pn~l~vd--~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva 235 (239)
.+....|+.+= +||.+-.|-..-+| |++-.+.+..+.+++.+.+-.-+.-|-+...|.-.|+-
T Consensus 23 tlSGAiDVIVV~q~DGs~~sSPFhVRF---------------Gk~~vl~~~ek~V~I~VNG~~~~~~MkLg~~GeAfFv~ 87 (110)
T PF04571_consen 23 TLSGAIDVIVVEQPDGSLKSSPFHVRF---------------GKLGVLRPREKVVDIEVNGKPVDFHMKLGENGEAFFVE 87 (110)
T ss_pred cccCceeEEEEecCCCCEecCccEEEE---------------cceeeecccCcEEEEEECCEEcceEEEECCCcEEEEEE
Confidence 34455565543 56776555433333 55555555555566555554445667778777766665
Q ss_pred eC
Q 026389 236 ET 237 (239)
Q Consensus 236 dt 237 (239)
|+
T Consensus 88 e~ 89 (110)
T PF04571_consen 88 ET 89 (110)
T ss_pred ec
Confidence 54
No 429
>PRK10626 hypothetical protein; Provisional
Probab=23.80 E-value=2.4e+02 Score=23.77 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=13.0
Q ss_pred EEEcCCCCEEEEeCCCeEEEEe
Q 026389 82 VCVDRNGVLYTATRDGWIKRLH 103 (239)
Q Consensus 82 ia~d~~G~ly~~~~~g~I~~~~ 103 (239)
+.++++|+||+ +|+-+.++
T Consensus 48 l~I~~dg~L~i---nGk~v~L~ 66 (239)
T PRK10626 48 LVISPDGNVMR---NGKQLSLN 66 (239)
T ss_pred eEEcCCCCEEE---CCEEecCC
Confidence 77788888887 55555544
No 430
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=23.28 E-value=6.5e+02 Score=23.91 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=48.2
Q ss_pred CcceEEEcC-CCCEEEEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389 78 GPEDVCVDR-NGVLYTATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL 150 (239)
Q Consensus 78 gPe~ia~d~-~G~ly~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l 150 (239)
+-.++++.. ++.++.++.|.++..||. +|+- .++. ++..++..++..+.+.+.-+....+++. ++| +.++
T Consensus 251 ~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 251 GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec---CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEe
Confidence 334566655 344556677888888873 4442 2221 3333144555555555554455666665 566 4444
Q ss_pred ecccCCccccccccEEEcCCCCEEEEeCC
Q 026389 151 ASHVNGSRINLADDLIAATDGSIYFSVAS 179 (239)
Q Consensus 151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~ 179 (239)
... . ...+.+..+ +.+.|+.+.
T Consensus 328 ~~h--~---~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 328 RGH--T---GPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred ccc--c---ccEEEEEec--CCEEEEEec
Confidence 321 1 224566666 555555544
No 431
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=22.75 E-value=3.5e+02 Score=24.23 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=36.5
Q ss_pred eEeccCCcCCcceEEEcCCC-CEEEEe-CCCeEEEEecCCcEEEe-eeccCcCccCeEEcCCCCEE
Q 026389 69 TRLGEGILNGPEDVCVDRNG-VLYTAT-RDGWIKRLHKNGTWENW-KLIGGDTLLGITTTQENEIL 131 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G-~ly~~~-~~g~I~~~~~~G~~~~~-~~~~~~p~~Gl~~d~~G~L~ 131 (239)
-+|.+|+ .+-..+.|+||| .|...+ .+-||-.|+-..+.-.. .......- |++|.+||+.-
T Consensus 85 ckIdeg~-agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~k-g~~f~~dg~f~ 148 (447)
T KOG4497|consen 85 CKIDEGQ-AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVK-GYAFHPDGQFC 148 (447)
T ss_pred EEeccCC-CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCce-eEEECCCCcee
Confidence 3455552 456668899999 566444 67788777754332111 11112235 89999999753
No 432
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=22.56 E-value=2.5e+02 Score=23.68 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=11.0
Q ss_pred cEEEcCCCCEEEE
Q 026389 164 DLIAATDGSIYFS 176 (239)
Q Consensus 164 ~l~vd~dG~iy~t 176 (239)
.+.|++||.|+..
T Consensus 148 ~~~i~~dG~I~~~ 160 (261)
T PRK12693 148 SITIGTDGTVSVT 160 (261)
T ss_pred eEEECCCCeEEEe
Confidence 6999999999764
No 433
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.06 E-value=6.1e+02 Score=25.18 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=31.9
Q ss_pred cCCcceEEEcCCCCEEE-EeCCCeEEEEe--cCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 76 LNGPEDVCVDRNGVLYT-ATRDGWIKRLH--KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 76 ~~gPe~ia~d~~G~ly~-~~~~g~I~~~~--~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
...+-.+.|.|-|..+. ++.+..+..|| ..|=...+......-. -++|.++|+..+.-.....+++.
T Consensus 112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~-~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD-VLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred ccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE-EEeecCCCceeeccCCcceeeee
Confidence 34556677777665442 33444444443 2332222221111122 35667888765544334666664
No 434
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=21.92 E-value=5.6e+02 Score=22.67 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=49.0
Q ss_pred CCCEEEEeCCCeEEEEec---CC-cEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-cCC-ceEEecccCCccc
Q 026389 87 NGVLYTATRDGWIKRLHK---NG-TWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASHVNGSRI 159 (239)
Q Consensus 87 ~G~ly~~~~~g~I~~~~~---~G-~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~ 159 (239)
....|+++.+..++.+|- +. ....+....+... |+.+. | -+||+|...|++.+| .+- ..+++........
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence 456788886666666663 22 1223334446666 77763 5 599999889999998 444 4455444332111
Q ss_pred cccccEEEcCCCCEEEEe
Q 026389 160 NLADDLIAATDGSIYFSV 177 (239)
Q Consensus 160 ~~pn~l~vd~dG~iy~td 177 (239)
-..++++.-+ +.|+++
T Consensus 173 -d~~~v~ISGn-~AYvA~ 188 (370)
T COG5276 173 -DTHDVAISGN-YAYVAW 188 (370)
T ss_pred -CceeEEEecC-eEEEEE
Confidence 1235555422 566665
No 435
>PF14564 Membrane_bind: Membrane binding; PDB: 1YHP_A 2B1O_A.
Probab=21.89 E-value=1.1e+02 Score=22.53 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=23.7
Q ss_pred CceE-EEEeCCCCeEEEecCCCCCcceEEEcCCCC
Q 026389 197 HGKL-LKYDPSLNETSILLDSLFFANGVALSKDED 230 (239)
Q Consensus 197 ~g~v-~~~d~~~~~~~~~~~~l~~pnGia~s~dg~ 230 (239)
+|.+ |+||+.+++++... ...+|.-|.+..+++
T Consensus 68 nGsvYFkY~~s~g~V~~~~-~~~fP~nl~i~~v~~ 101 (110)
T PF14564_consen 68 NGSVYFKYNPSTGEVSIRK-TENFPKNLEIKQVDK 101 (110)
T ss_dssp EEEEEEEEETTTTEEEEE--TTTS-SSEEEEEEET
T ss_pred cceEEEEECCCCCeEEEee-cCCCCcceEEEEcCC
Confidence 3556 46999999988776 678888888876554
No 436
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=21.85 E-value=3.6e+02 Score=24.24 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=18.1
Q ss_pred CCcccchhhhhHHHHHHHHHHHHHhhccCCCcccccc
Q 026389 13 SSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLL 49 (239)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 49 (239)
||-..|++++. -.=++..++..++.+|+-.+.+.
T Consensus 94 NPlaGCLP~LI---QmPIF~aLY~~LR~spf~~~~y~ 127 (375)
T PRK02654 94 NPLAGCLPLLV---QMPILFALFATLRGSPFADVNYT 127 (375)
T ss_pred CChhhHHHHHH---HHHHHHHHHHHHHhCccccccce
Confidence 77777877655 11222223445666666555443
No 437
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=21.65 E-value=2e+02 Score=24.34 Aligned_cols=13 Identities=8% Similarity=0.255 Sum_probs=10.9
Q ss_pred cEEEcCCCCEEEE
Q 026389 164 DLIAATDGSIYFS 176 (239)
Q Consensus 164 ~l~vd~dG~iy~t 176 (239)
++.|++||.|+..
T Consensus 148 ~~~i~~dG~i~~~ 160 (262)
T PRK12691 148 SITINASGQVSAT 160 (262)
T ss_pred eEEECCCCEEEEE
Confidence 6899999999764
No 438
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=21.63 E-value=3.5e+02 Score=24.60 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=39.4
Q ss_pred CCcceEEEcC--CCCEEEEeCCCeEEEEec-CCc--E-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389 77 NGPEDVCVDR--NGVLYTATRDGWIKRLHK-NGT--W-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT 143 (239)
Q Consensus 77 ~gPe~ia~d~--~G~ly~~~~~g~I~~~~~-~G~--~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~ 143 (239)
..-|++.|+| ++-+..++-||.|..||. .+. . .......+..+ -|.++.+-.|++.....|.+++.
T Consensus 258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN-VISWnr~~~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN-VISWNRREPLLASGGDDGTLSIW 329 (440)
T ss_pred cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee-eEEccCCcceeeecCCCceEEEE
Confidence 4578899997 344446668999988884 331 1 11122334455 55565444566666667777764
No 439
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=3.7e+02 Score=23.21 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=28.4
Q ss_pred EEcC-CCCEEE-EeCCCeEEEEe--cCCcEEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc
Q 026389 83 CVDR-NGVLYT-ATRDGWIKRLH--KNGTWENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT 143 (239)
Q Consensus 83 a~d~-~G~ly~-~~~~g~I~~~~--~~G~~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~ 143 (239)
+|.| .++++. ++.|+....|| ..|+...+.......+ .+-+.+ +.+++++....++++..
T Consensus 154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil-~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL-CCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE-eecccccCCcEEEecCCCceEEEE
Confidence 4444 345553 23566555554 2355444332222333 333332 23566666666777664
No 440
>PF08789 PBCV_basic_adap: PBCV-specific basic adaptor domain; InterPro: IPR014897 The small PBCV-specific basic adaptor protein is found fused to S/T protein kinases and the 2-Cysteine domain [].
Probab=21.46 E-value=1.9e+02 Score=17.14 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=8.9
Q ss_pred EcCCCCEEEEeCC
Q 026389 167 AATDGSIYFSVAS 179 (239)
Q Consensus 167 vd~dG~iy~td~~ 179 (239)
+|..|+..|.+..
T Consensus 4 vdakgR~i~~g~r 16 (40)
T PF08789_consen 4 VDAKGRKIFKGPR 16 (40)
T ss_pred ccCcCCEEEECCC
Confidence 5667777777754
No 441
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=21.26 E-value=5.1e+02 Score=22.03 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=28.6
Q ss_pred ceEEEcCCCC--EEEEe-CCCeEE--EEecCC-cE-EEeeec-cCcCccCeEEcCCCCEEEEeCC
Q 026389 80 EDVCVDRNGV--LYTAT-RDGWIK--RLHKNG-TW-ENWKLI-GGDTLLGITTTQENEILVCDAD 136 (239)
Q Consensus 80 e~ia~d~~G~--ly~~~-~~g~I~--~~~~~G-~~-~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~ 136 (239)
-++|+|++|. ||.+. .+|.|. ++++.- +. .+|... ..+.. |=+|--=|.||+.++.
T Consensus 125 iD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~-~~aF~iCGvLY~v~S~ 188 (249)
T KOG3545|consen 125 IDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSA-GNAFMICGVLYVVHSY 188 (249)
T ss_pred ccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCc-CceEEEeeeeEEEecc
Confidence 5788898883 45443 455554 666521 11 222111 12222 3333334788888765
No 442
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=20.83 E-value=1.1e+02 Score=22.23 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=16.5
Q ss_pred CceEEEEeCCCCeEEEecCCC
Q 026389 197 HGKLLKYDPSLNETSILLDSL 217 (239)
Q Consensus 197 ~g~v~~~d~~~~~~~~~~~~l 217 (239)
.|+||.||+....+..+++++
T Consensus 90 ~G~Vy~yd~~~~~l~~lA~~l 110 (125)
T PF02393_consen 90 SGRVYAYDPEDDRLYRLADSL 110 (125)
T ss_pred CCeEEEEEcCCCEEEEEeCCH
Confidence 489999999877777777664
No 443
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=20.81 E-value=1.1e+02 Score=21.19 Aligned_cols=23 Identities=22% Similarity=0.037 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHHHHHHHhhccC
Q 026389 19 VPVCSGIVLSCLLAFTLQIFFFS 41 (239)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~ 41 (239)
||.+++..+++++++++++....
T Consensus 1 MR~~~~aa~a~~~~~~~~~~~~~ 23 (82)
T PF12071_consen 1 MRRLLLAALALLLAAALLALAAA 23 (82)
T ss_pred ChhHHHHHHHHHHHHHHHhcccc
Confidence 55555444444333334433333
No 444
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=20.68 E-value=4.2e+02 Score=22.64 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=29.1
Q ss_pred CCEEEEeCCCeEEEEecCCc-EEEeeeccCcCccCeE----Ec-CCCCEEEEeCCCCeEE
Q 026389 88 GVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGIT----TT-QENEILVCDADKGLLK 141 (239)
Q Consensus 88 G~ly~~~~~g~I~~~~~~G~-~~~~~~~~~~p~~Gl~----~d-~~G~L~v~d~~~g~~~ 141 (239)
..|.+|..+|.|+.+|+.+- +..-...++.|. -|. +| -|.+|+|+-+...++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEE
Confidence 36777888888888887652 221123334443 322 23 4556777766544443
No 445
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.55 E-value=5.6e+02 Score=22.13 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=33.1
Q ss_pred CcceEEEcC--CCCEEEEeCCCeEEEEecC---CcEEEeeeccCcCccCeEEc-CCCCEEEEeCCCCeEEEc
Q 026389 78 GPEDVCVDR--NGVLYTATRDGWIKRLHKN---GTWENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT 143 (239)
Q Consensus 78 gPe~ia~d~--~G~ly~~~~~g~I~~~~~~---G~~~~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~v~ 143 (239)
+--+++|.+ +..+++++.||.+..+|.. +-+..|.+...... .+-.. .+++.+++.+..+.+++.
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~-Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY-SVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE-EeccccccceeEEeeccCCceEee
Confidence 444677776 3467777888888777721 11112211111112 22222 234556666666777765
No 446
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.43 E-value=1e+02 Score=22.35 Aligned_cols=20 Identities=10% Similarity=0.286 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHHHHHhh
Q 026389 19 VPVCSGIVLSCLLAFTLQIF 38 (239)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (239)
||++.++++++++.+.+.+.
T Consensus 1 m~~~~~vll~ll~~l~y~l~ 20 (105)
T PRK00888 1 MRLLTLLLLALLVWLQYSLW 20 (105)
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 66677666666666666553
No 447
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=20.31 E-value=9.7e+02 Score=24.82 Aligned_cols=76 Identities=20% Similarity=0.422 Sum_probs=45.6
Q ss_pred eEeccCCcCCcceEEEcCCCCEEEEe--CCCeEEEEec--C-CcE----EEeeeccCcCccCeEEc-----CCCCEEEEe
Q 026389 69 TRLGEGILNGPEDVCVDRNGVLYTAT--RDGWIKRLHK--N-GTW----ENWKLIGGDTLLGITTT-----QENEILVCD 134 (239)
Q Consensus 69 ~~l~~g~~~gPe~ia~d~~G~ly~~~--~~g~I~~~~~--~-G~~----~~~~~~~~~p~~Gl~~d-----~~G~L~v~d 134 (239)
+....|...-+++|..-++|.+|+|+ .+.++.++.. + |+. +++... + |...+.+. .++.++.|.
T Consensus 299 kve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NL-g-PI~Dm~Vvd~d~q~q~qivtCs 376 (1096)
T KOG1897|consen 299 KVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNL-G-PIVDMCVVDLDRQGQGQIVTCS 376 (1096)
T ss_pred EEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccc-c-ceeeEEEEeccccCCceEEEEe
Confidence 44444556677888877899999999 5667878763 3 321 222221 2 33255543 234688886
Q ss_pred CC--CCeEEEccCC
Q 026389 135 AD--KGLLKVTEEG 146 (239)
Q Consensus 135 ~~--~g~~~v~~~g 146 (239)
.. .|-+++-.+|
T Consensus 377 Ga~kdgSLRiiRng 390 (1096)
T KOG1897|consen 377 GAFKDGSLRIIRNG 390 (1096)
T ss_pred CCCCCCcEEEEecc
Confidence 43 4677777666
No 448
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=20.15 E-value=5.3e+02 Score=27.22 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=12.2
Q ss_pred EeccCCcCCcceEEEcCCCCEEEEe
Q 026389 70 RLGEGILNGPEDVCVDRNGVLYTAT 94 (239)
Q Consensus 70 ~l~~g~~~gPe~ia~d~~G~ly~~~ 94 (239)
.+...+..||-....+=+|+|..+.
T Consensus 1090 el~~eE~KGtVsavceV~G~l~~~~ 1114 (1366)
T KOG1896|consen 1090 ELYIEEQKGTVSAVCEVRGHLLSSQ 1114 (1366)
T ss_pred eeehhhcccceEEEEEeccEEEEcc
Confidence 3333345555554444466665544
No 449
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=20.01 E-value=5.8e+02 Score=22.09 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=36.7
Q ss_pred EEEcCCCCEEEEeCCCeEEEEe-cCC--cE--EEeeeccCcCc-cCeEEcCCCCEEEEeCCCCeEEEc-cCC
Q 026389 82 VCVDRNGVLYTATRDGWIKRLH-KNG--TW--ENWKLIGGDTL-LGITTTQENEILVCDADKGLLKVT-EEG 146 (239)
Q Consensus 82 ia~d~~G~ly~~~~~g~I~~~~-~~G--~~--~~~~~~~~~p~-~Gl~~d~~G~L~v~d~~~g~~~v~-~~g 146 (239)
++...+|++.....+..|-.-. .|. .+ +........|- .=+++.+|+.|++.....|.+++. -.|
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 4666788888766565442222 222 11 00111222221 147888999988887778888776 455
Done!