BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026390
         (239 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ATI|A Chain A, Mitf:m-Box Complex
 pdb|4ATI|B Chain B, Mitf:m-Box Complex
 pdb|4ATK|A Chain A, Mitf:e-Box Complex
 pdb|4ATK|B Chain B, Mitf:e-Box Complex
          Length = 118

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 149 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQR 205
           A+  Q  D+H+L ER RR  I++R+K L  L+P  N       K  +L   ++YI+ LQR
Sbjct: 22  AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQR 81

Query: 206 Q------VEFLSMKLEAVNSRMNL 223
           +      +E    KLE  N  + L
Sbjct: 82  EQQRAKDLENRQKKLEHANRHLLL 105


>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
          Length = 82

 Score = 35.8 bits (81), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 151 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQ 204
           RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ
Sbjct: 3   RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQ 56


>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 34.7 bits (78), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 158 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQVEFLSMKLE 215
           H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+V  L   ++
Sbjct: 8   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQDID 66


>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
 pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
          Length = 80

 Score = 33.1 bits (74), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 158 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 206
           H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+
Sbjct: 16  HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65


>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
           Transcriptional Activator Complex
          Length = 387

 Score = 33.1 bits (74), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 143 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINY 199
           +Y   + R   A ++HS  E+ RR+K++  +  L  LVP CN +   + K  VL   + +
Sbjct: 2   EYAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQH 61

Query: 200 IQSLQ 204
           +++L+
Sbjct: 62  MKTLR 66


>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
           BHLHZ DOMAIN
          Length = 86

 Score = 32.3 bits (72), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 158 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 206
           H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+
Sbjct: 7   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 56


>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
 pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
          Length = 83

 Score = 32.0 bits (71), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 158 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 206
           H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55


>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex
           Structure Of Human Clock-bmal1 Basic Helix-loop-helix
           Domains With E-box Dna
          Length = 73

 Score = 31.2 bits (69), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 154 ATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQ 204
           A ++HS  E+ RR+K++  +  L  LVP CN +   + K  VL   + ++++L+
Sbjct: 9   AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62


>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
 pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
          Length = 76

 Score = 31.2 bits (69), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 158 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 206
           H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+
Sbjct: 5   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 54


>pdb|3DNM|A Chain A, Crystal Structure Hormone-Sensitive Lipase From A
           Metagenome Library
 pdb|3DNM|B Chain B, Crystal Structure Hormone-Sensitive Lipase From A
           Metagenome Library
 pdb|3DNM|C Chain C, Crystal Structure Hormone-Sensitive Lipase From A
           Metagenome Library
 pdb|3DNM|D Chain D, Crystal Structure Hormone-Sensitive Lipase From A
           Metagenome Library
          Length = 336

 Score = 30.4 bits (67), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 145 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA-----LVLDEIINY 199
           IHV +     +DS +LAERA    +S  +KI  D+ P   ++ GK      + + EI ++
Sbjct: 259 IHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDM-PHVFQMYGKFVNAADISIKEICHW 317

Query: 200 IQS 202
           I +
Sbjct: 318 ISA 320


>pdb|3K6K|A Chain A, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
           From A Metagenome Library
 pdb|3K6K|B Chain B, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
           From A Metagenome Library
 pdb|3K6K|C Chain C, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
           From A Metagenome Library
 pdb|3K6K|D Chain D, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
           From A Metagenome Library
          Length = 322

 Score = 30.4 bits (67), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 145 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA-----LVLDEIINY 199
           IHV +     +DS +LAERA    +S  +KI  D+ P   ++ GK      + + EI ++
Sbjct: 245 IHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDM-PHVFQMYGKFVNAADISIKEICHW 303

Query: 200 IQS 202
           I +
Sbjct: 304 ISA 306


>pdb|1J79|A Chain A, Molecular Structure Of Dihydroorotase: A Paradigm For
           Catalysis Through The Use Of A Binuclear Metal Center
 pdb|1J79|B Chain B, Molecular Structure Of Dihydroorotase: A Paradigm For
           Catalysis Through The Use Of A Binuclear Metal Center
          Length = 347

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAPHDFTPLMTCY 79


>pdb|3JZE|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
           Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
           Enterica Serovar Typhimurium Str. Lt2
 pdb|3JZE|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
           Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
           Enterica Serovar Typhimurium Str. Lt2
 pdb|3JZE|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
           Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
           Enterica Serovar Typhimurium Str. Lt2
 pdb|3JZE|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
           Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
           Enterica Serovar Typhimurium Str. Lt2
          Length = 372

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  + + I ++   + +    L+AV +  + TP +  +
Sbjct: 49  MLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCY 104


>pdb|2Z24|A Chain A, Thr110ser Dihydroorotase From E. Coli
 pdb|2Z24|B Chain B, Thr110ser Dihydroorotase From E. Coli
          Length = 347

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|2E25|A Chain A, The Crystal Structure Of The T109s Mutant Of E. Coli
           Dihydroorotase Complexed With An Inhibitor
           5-fluoroorotate
 pdb|2Z27|A Chain A, Thr109ser Dihydroorotase From E. Coli
 pdb|2Z27|B Chain B, Thr109ser Dihydroorotase From E. Coli
          Length = 347

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|2Z2A|A Chain A, Thr109gly Dihydroorotase From E. Coli
 pdb|2Z2A|B Chain B, Thr109gly Dihydroorotase From E. Coli
          Length = 347

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|1XGE|A Chain A, Dihydroorotase From Escherichia Coli: Loop Movement And
           Cooperativity Between Subunits
 pdb|1XGE|B Chain B, Dihydroorotase From Escherichia Coli: Loop Movement And
           Cooperativity Between Subunits
 pdb|2EG6|A Chain A, The Crystal Structure Of The Ligand-free Dihydroorotase
           From E. Coli
 pdb|2EG6|B Chain B, The Crystal Structure Of The Ligand-free Dihydroorotase
           From E. Coli
 pdb|2EG7|A Chain A, The Crystal Structure Of E. Coli Dihydroorotase Complexed
           With Hddp
 pdb|2EG7|B Chain B, The Crystal Structure Of E. Coli Dihydroorotase Complexed
           With Hddp
 pdb|2EG8|A Chain A, The Crystal Structure Of E. Coli Dihydroorotase Complexed
           With 5- Fluoroorotic Acid
 pdb|2EG8|B Chain B, The Crystal Structure Of E. Coli Dihydroorotase Complexed
           With 5- Fluoroorotic Acid
          Length = 347

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|2Z29|A Chain A, Thr109ala Dihydroorotase From E. Coli
 pdb|2Z29|B Chain B, Thr109ala Dihydroorotase From E. Coli
          Length = 347

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|2Z26|A Chain A, Thr110ala Dihydroorotase From E. Coli
 pdb|2Z26|B Chain B, Thr110ala Dihydroorotase From E. Coli
          Length = 347

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|3MJM|A Chain A, His257ala Mutant Of Dihydroorotase From E. Coli
 pdb|3MJM|B Chain B, His257ala Mutant Of Dihydroorotase From E. Coli
          Length = 347

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|2Z28|A Chain A, Thr109val Dihydroorotase From E. Coli
 pdb|2Z28|B Chain B, Thr109val Dihydroorotase From E. Coli
          Length = 347

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|2Z25|A Chain A, Thr110val Dihydroorotase From E. Coli
 pdb|2Z25|B Chain B, Thr110val Dihydroorotase From E. Coli
          Length = 347

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|2Z2B|A Chain A, Deletion 107-116 Mutant Of Dihydroorotase From E. Coli
          Length = 337

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 32/56 (57%)

Query: 175 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNLTPTIEGF 230
           +L+ +VP  +++ G+A+V+  +   + +++  V +    L+AV +  + TP +  +
Sbjct: 24  MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY 79


>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
 pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
 pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
           Magnesium Ions
 pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
           Magnesium Ions
 pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
 pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
 pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
           Coli
          Length = 175

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 103 GKWMKTSGSKNENGSKAEVEAS 124
           GKW+K  G +N   +KAE+ AS
Sbjct: 147 GKWVKVEGWENAEAAKAEIVAS 168


>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
          Length = 175

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 103 GKWMKTSGSKNENGSKAEVEAS 124
           GKW+K  G +N   +KAE+ AS
Sbjct: 147 GKWVKVEGWENAEAAKAEIVAS 168


>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
 pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
 pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
           Pyrophosphatase
 pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
           Pyrophosphatase
 pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
 pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
           Pyrophosphate And Fluoride
 pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
           Pyrophosphatase From Escherichia Coli
          Length = 175

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 103 GKWMKTSGSKNENGSKAEVEAS 124
           GKW+K  G +N   +KAE+ AS
Sbjct: 147 GKWVKVEGWENAEAAKAEIVAS 168


>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
 pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
          Length = 175

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 103 GKWMKTSGSKNENGSKAEVEAS 124
           GKW+K  G +N   +KAE+ AS
Sbjct: 147 GKWVKVEGWENAEAAKAEIVAS 168


>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
 pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
          Length = 175

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 103 GKWMKTSGSKNENGSKAEVEAS 124
           GKW+K  G +N   +KAE+ AS
Sbjct: 147 GKWVKVEGWENAEAAKAEIVAS 168


>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
           Pyrophosphatase
          Length = 175

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 103 GKWMKTSGSKNENGSKAEVEAS 124
           GKW+K  G +N   +KAE+ AS
Sbjct: 147 GKWVKVEGWENAEAAKAEIVAS 168


>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
 pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
          Length = 175

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 103 GKWMKTSGSKNENGSKAEVEAS 124
           GKW+K  G +N   +KAE+ AS
Sbjct: 147 GKWVKVEGWENAEAAKAEIVAS 168


>pdb|1UKL|C Chain C, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|D Chain D, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|E Chain E, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|F Chain F, Crystal Structure Of Importin-Beta And Srebp-2 Complex
          Length = 61

 Score = 27.3 bits (59), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 166 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQR 205
           R  I++++  L+DLV G +    K+ VL + I+YI+ LQ+
Sbjct: 1   RSSINDKIIELKDLVXGTDAKXHKSGVLRKAIDYIKYLQQ 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.128    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,214,060
Number of Sequences: 62578
Number of extensions: 216337
Number of successful extensions: 527
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 37
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)