Query 026390
Match_columns 239
No_of_seqs 217 out of 1079
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 3.2E-18 1.1E-22 129.2 4.7 67 155-221 7-73 (82)
2 4ati_A MITF, microphthalmia-as 99.7 2E-17 7E-22 132.7 6.6 74 140-213 13-89 (118)
3 1a0a_A BHLH, protein (phosphat 99.6 2.3E-16 7.7E-21 114.3 3.3 54 155-208 3-62 (63)
4 1hlo_A Protein (transcription 99.6 1.6E-15 5.5E-20 113.4 6.4 64 156-219 14-78 (80)
5 1nkp_B MAX protein, MYC proto- 99.6 1.9E-15 6.5E-20 113.4 6.5 66 156-221 4-70 (83)
6 4h10_B Circadian locomoter out 99.6 9.9E-16 3.4E-20 113.8 4.5 57 155-211 9-65 (71)
7 1an4_A Protein (upstream stimu 99.6 4.7E-16 1.6E-20 111.9 2.5 55 154-208 5-64 (65)
8 1nkp_A C-MYC, MYC proto-oncoge 99.5 1.2E-14 4E-19 111.3 7.1 63 156-218 8-72 (88)
9 4h10_A ARYL hydrocarbon recept 99.5 3.2E-15 1.1E-19 111.3 1.5 52 154-205 9-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.5 1.1E-13 3.8E-18 104.3 7.9 65 156-220 3-69 (80)
11 3u5v_A Protein MAX, transcript 99.4 8.1E-14 2.8E-18 104.4 4.3 56 156-211 7-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.1 2.9E-11 1E-15 88.8 2.9 52 156-207 14-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 2.8E-10 9.4E-15 81.6 6.1 53 156-208 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 5.9E-10 2E-14 100.8 6.4 53 154-206 12-64 (361)
15 4ath_A MITF, microphthalmia-as 98.9 2.4E-09 8.3E-14 81.7 7.5 50 165-214 3-55 (83)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.6E-09 5.3E-14 99.4 4.0 52 153-205 12-67 (387)
17 2lfh_A DNA-binding protein inh 98.6 1.1E-08 3.8E-13 75.5 2.6 46 160-205 20-67 (68)
18 4aya_A DNA-binding protein inh 98.2 4.5E-06 1.5E-10 65.3 7.0 48 162-209 33-82 (97)
19 1pyi_A Protein (pyrimidine pat 80.5 3.5 0.00012 29.9 5.6 30 197-226 47-76 (96)
20 1zme_C Proline utilization tra 79.0 1.6 5.5E-05 29.9 3.2 25 197-221 43-67 (70)
21 2wuj_A Septum site-determining 69.0 5.1 0.00017 27.7 3.7 32 190-221 26-57 (57)
22 2wt7_A Proto-oncogene protein 66.6 12 0.00043 26.0 5.4 17 162-178 1-17 (63)
23 2er8_A Regulatory protein Leu3 63.9 3.8 0.00013 28.2 2.2 23 197-219 48-70 (72)
24 3coq_A Regulatory protein GAL4 54.5 8.3 0.00029 27.3 2.7 28 197-224 44-71 (89)
25 1dh3_A Transcription factor CR 52.4 9.4 0.00032 26.2 2.6 24 198-221 22-45 (55)
26 2oqq_A Transcription factor HY 52.3 9.4 0.00032 25.5 2.4 24 198-221 3-26 (42)
27 2jee_A YIIU; FTSZ, septum, coi 50.9 17 0.00057 27.3 3.9 27 193-219 15-41 (81)
28 1hwt_C Protein (heme activator 47.8 6.3 0.00021 27.6 1.1 23 197-219 57-79 (81)
29 3muj_A Transcription factor CO 45.6 30 0.001 28.3 5.0 36 168-203 95-133 (138)
30 2ke4_A CDC42-interacting prote 40.4 56 0.0019 24.9 5.5 40 181-220 52-91 (98)
31 2dgc_A Protein (GCN4); basic d 39.9 19 0.00064 25.3 2.6 21 201-221 40-60 (63)
32 3he4_B Synzip5; heterodimeric 36.6 56 0.0019 21.6 4.3 23 193-215 5-27 (46)
33 1jnm_A Proto-oncogene C-JUN; B 35.8 24 0.00083 24.3 2.6 11 166-176 17-27 (62)
34 1gk7_A Vimentin; intermediate 35.4 30 0.001 22.3 2.8 24 193-216 15-38 (39)
35 1gd2_E Transcription factor PA 35.1 35 0.0012 24.6 3.5 13 166-178 24-36 (70)
36 1t2k_D Cyclic-AMP-dependent tr 34.8 26 0.00088 24.0 2.6 15 203-217 41-55 (61)
37 3s4r_A Vimentin; alpha-helix, 33.4 34 0.0011 25.7 3.2 28 193-220 18-45 (93)
38 2l5g_A GPS2 protein, G protein 32.4 1E+02 0.0036 20.0 5.0 31 187-217 4-34 (38)
39 2pnv_A Small conductance calci 29.2 13 0.00044 24.8 0.2 26 197-222 8-33 (43)
40 2akf_A Coronin-1A; coiled coil 28.2 71 0.0024 19.9 3.5 20 200-219 8-27 (32)
41 1aq5_A Matrilin-1, CMP, cartil 25.4 89 0.0031 21.1 3.9 33 189-221 14-46 (47)
42 1t3u_A Conserved hypothetical 25.3 1.6E+02 0.0056 21.6 5.9 26 166-193 32-57 (104)
43 3ra3_B P2F; coiled coil domain 25.3 30 0.001 20.8 1.3 22 200-221 2-23 (28)
44 3kin_B Kinesin heavy chain; mo 23.7 93 0.0032 24.0 4.3 26 193-218 91-116 (117)
45 3v86_A De novo design helix; c 22.7 43 0.0015 20.0 1.7 21 199-219 1-21 (27)
46 1a93_B MAX protein, coiled coi 22.6 67 0.0023 20.4 2.7 18 200-217 16-33 (34)
47 1xkm_B Distinctin chain B; por 21.4 1.1E+02 0.0037 18.1 3.2 18 191-208 4-21 (26)
48 2fhx_A SPM-1; metallo-beta-lac 20.8 51 0.0018 26.5 2.4 30 178-208 216-245 (246)
49 3tul_A Cell invasion protein S 20.4 95 0.0032 25.8 3.9 40 191-230 62-102 (158)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.72 E-value=3.2e-18 Score=129.22 Aligned_cols=67 Identities=27% Similarity=0.408 Sum_probs=62.6
Q ss_pred CCcccHHHHhHHHHHHHHHHHHHhcCCCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026390 155 TDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 155 t~sHs~aERrRR~kIne~~~~LrsLVP~~~k~~dKAsIL~eAIdYIk~LQ~qVe~L~~~le~l~~~l 221 (239)
+.+|+++||+||++||++|..|++|||++...++|++||.+||+||++||.+++.|+++++++...+
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999966679999999999999999999999999999998765
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.69 E-value=2e-17 Score=132.65 Aligned_cols=74 Identities=32% Similarity=0.473 Sum_probs=51.4
Q ss_pred CCCccccccccCCCCCCcccHHHHhHHHHHHHHHHHHHhcCCCCCC---CCChHhHHHHHHHHHHHHHHHHHHHHHH
Q 026390 140 PPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQVEFLSMK 213 (239)
Q Consensus 140 p~~d~~~~R~rr~~at~sHs~aERrRR~kIne~~~~LrsLVP~~~k---~~dKAsIL~eAIdYIk~LQ~qVe~L~~~ 213 (239)
|..+..+...++.+++.+|+++||+||++||++|.+|++|||+|.+ .++|++||++||+||++||.+++.|+..
T Consensus 13 ~t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 13 PTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777778888999999999999999999999999999964 3699999999999999999999999865
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.61 E-value=2.3e-16 Score=114.27 Aligned_cols=54 Identities=30% Similarity=0.436 Sum_probs=48.4
Q ss_pred CCcccHHHHhHHHHHHHHHHHHHhcCCCCC------CCCChHhHHHHHHHHHHHHHHHHH
Q 026390 155 TDSHSLAERARREKISERMKILQDLVPGCN------KVIGKALVLDEIINYIQSLQRQVE 208 (239)
Q Consensus 155 t~sHs~aERrRR~kIne~~~~LrsLVP~~~------k~~dKAsIL~eAIdYIk~LQ~qVe 208 (239)
+++|+++||+||++||.+|.+|+.|||.|. ..++||+||++||+||++||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999763 235899999999999999998763
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=1.6e-15 Score=113.42 Aligned_cols=64 Identities=27% Similarity=0.469 Sum_probs=59.1
Q ss_pred CcccHHHHhHHHHHHHHHHHHHhcCCCCC-CCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026390 156 DSHSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 219 (239)
Q Consensus 156 ~sHs~aERrRR~kIne~~~~LrsLVP~~~-k~~dKAsIL~eAIdYIk~LQ~qVe~L~~~le~l~~ 219 (239)
..|+..||+||..||++|..|++|||.+. ..++|++||..||+||++|+.+++.|+.+++.|..
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999873 23699999999999999999999999999998864
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.58 E-value=1.9e-15 Score=113.42 Aligned_cols=66 Identities=26% Similarity=0.450 Sum_probs=57.8
Q ss_pred CcccHHHHhHHHHHHHHHHHHHhcCCCC-CCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026390 156 DSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 156 ~sHs~aERrRR~kIne~~~~LrsLVP~~-~k~~dKAsIL~eAIdYIk~LQ~qVe~L~~~le~l~~~l 221 (239)
.+|+..||+||..||+.|..|+++||.+ ...++|++||.+||+||++|+.+++.|+.+++.+..+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999986 23369999999999999999998888887777766543
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=9.9e-16 Score=113.82 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=51.9
Q ss_pred CCcccHHHHhHHHHHHHHHHHHHhcCCCCCCCCChHhHHHHHHHHHHHHHHHHHHHH
Q 026390 155 TDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 211 (239)
Q Consensus 155 t~sHs~aERrRR~kIne~~~~LrsLVP~~~k~~dKAsIL~eAIdYIk~LQ~qVe~L~ 211 (239)
+.+|+++||+||++||++|.+|++|||++...++|++||++||+||++||.++.-|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 368999999999999999999999999876556999999999999999999987653
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=4.7e-16 Score=111.90 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=49.7
Q ss_pred CCCcccHHHHhHHHHHHHHHHHHHhcCCCCCC-----CCChHhHHHHHHHHHHHHHHHHH
Q 026390 154 ATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQVE 208 (239)
Q Consensus 154 at~sHs~aERrRR~kIne~~~~LrsLVP~~~k-----~~dKAsIL~eAIdYIk~LQ~qVe 208 (239)
.+.+|+.+||+||++||++|.+|++|||.|.. .++|++||.+||+||++||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999863 36999999999999999998753
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=1.2e-14 Score=111.28 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=54.9
Q ss_pred CcccHHHHhHHHHHHHHHHHHHhcCCCCC--CCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026390 156 DSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 218 (239)
Q Consensus 156 ~sHs~aERrRR~kIne~~~~LrsLVP~~~--k~~dKAsIL~eAIdYIk~LQ~qVe~L~~~le~l~ 218 (239)
..|+..||+||..||++|..|+++||.+. ..++|++||.+||+||++|+.+++.|..+++.+.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999873 3469999999999999999999887766555544
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.50 E-value=3.2e-15 Score=111.32 Aligned_cols=52 Identities=33% Similarity=0.562 Sum_probs=46.8
Q ss_pred CCCcccHHHHhHHHHHHHHHHHHHhcCCCCC---CCCChHhHHHHHHHHHHHHHH
Q 026390 154 ATDSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQR 205 (239)
Q Consensus 154 at~sHs~aERrRR~kIne~~~~LrsLVP~~~---k~~dKAsIL~eAIdYIk~LQ~ 205 (239)
++.+|+++||+||++||+.|.+|+.|||.|. ..+||++||+.||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999884 335999999999999999974
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=1.1e-13 Score=104.35 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=57.4
Q ss_pred CcccHHHHhHHHHHHHHHHHHHhcCCCCC--CCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026390 156 DSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 220 (239)
Q Consensus 156 ~sHs~aERrRR~kIne~~~~LrsLVP~~~--k~~dKAsIL~eAIdYIk~LQ~qVe~L~~~le~l~~~ 220 (239)
..|+..||+||..||++|..|+++||.+. ...+|+.||.+||+||+.|+.+++.|..+++.+..+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999763 235999999999999999999999888887777654
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.42 E-value=8.1e-14 Score=104.41 Aligned_cols=56 Identities=29% Similarity=0.380 Sum_probs=48.5
Q ss_pred CcccHHHHhHHHHHHHHHHHHHhcCCCC---CCCCChHhHHHHHHHHHHHHHHHHHHHH
Q 026390 156 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQVEFLS 211 (239)
Q Consensus 156 ~sHs~aERrRR~kIne~~~~LrsLVP~~---~k~~dKAsIL~eAIdYIk~LQ~qVe~L~ 211 (239)
..|+..||+||..||++|..|+.+||.+ .+..+|+.||..||+||++||+++++++
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999953 3334799999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.10 E-value=2.9e-11 Score=88.81 Aligned_cols=52 Identities=27% Similarity=0.423 Sum_probs=47.1
Q ss_pred CcccHHHHhHHHHHHHHHHHHHhcCCCC-CCCCChHhHHHHHHHHHHHHHHHH
Q 026390 156 DSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQV 207 (239)
Q Consensus 156 ~sHs~aERrRR~kIne~~~~LrsLVP~~-~k~~dKAsIL~eAIdYIk~LQ~qV 207 (239)
..|+..||+|+..||+.|..|+++||.. ++.++|+.||..||+||.+||+.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999975 344799999999999999999865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.05 E-value=2.8e-10 Score=81.64 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=47.5
Q ss_pred CcccHHHHhHHHHHHHHHHHHHhcCCCC--CCCCChHhHHHHHHHHHHHHHHHHH
Q 026390 156 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVE 208 (239)
Q Consensus 156 ~sHs~aERrRR~kIne~~~~LrsLVP~~--~k~~dKAsIL~eAIdYIk~LQ~qVe 208 (239)
..|+..||+|+..||+.|..|+.+||.. ++.++|..+|..||+||.+|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999976 3457999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.96 E-value=5.9e-10 Score=100.83 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=41.8
Q ss_pred CCCcccHHHHhHHHHHHHHHHHHHhcCCCCCCCCChHhHHHHHHHHHHHHHHH
Q 026390 154 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 206 (239)
Q Consensus 154 at~sHs~aERrRR~kIne~~~~LrsLVP~~~k~~dKAsIL~eAIdYIk~LQ~q 206 (239)
.+.+|+.+||+||++||..|.+|+.|||....++||++||..||+||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 34689999999999999999999999995544569999999999999999864
No 15
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.93 E-value=2.4e-09 Score=81.75 Aligned_cols=50 Identities=30% Similarity=0.408 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC---CChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026390 165 RREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQRQVEFLSMKL 214 (239)
Q Consensus 165 RR~kIne~~~~LrsLVP~~~k~---~dKAsIL~eAIdYIk~LQ~qVe~L~~~l 214 (239)
-|..||++|.+|..|||.++.. ++|++||.+||+||++||++++.+.+..
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999987542 6999999999999999999888776443
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.82 E-value=1.6e-09 Score=99.39 Aligned_cols=52 Identities=33% Similarity=0.558 Sum_probs=46.4
Q ss_pred CCCCcccHHHHhHHHHHHHHHHHHHhcCCCC----CCCCChHhHHHHHHHHHHHHHH
Q 026390 153 QATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR 205 (239)
Q Consensus 153 ~at~sHs~aERrRR~kIne~~~~LrsLVP~~----~k~~dKAsIL~eAIdYIk~LQ~ 205 (239)
+++.+|+.+||+||++||+.|.+|+.|||.+ .+ +||++||..||+||+.|+.
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhc
Confidence 3457899999999999999999999999953 44 5999999999999999984
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=75.48 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=40.3
Q ss_pred HHHHhHHHHHHHHHHHHHhcCCCC--CCCCChHhHHHHHHHHHHHHHH
Q 026390 160 LAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR 205 (239)
Q Consensus 160 ~aERrRR~kIne~~~~LrsLVP~~--~k~~dKAsIL~eAIdYIk~LQ~ 205 (239)
--||+|...||+.|..|+.+||.. +++++|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 347788889999999999999976 3447999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.15 E-value=4.5e-06 Score=65.30 Aligned_cols=48 Identities=27% Similarity=0.414 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHHHHHhcCCCC--CCCCChHhHHHHHHHHHHHHHHHHHH
Q 026390 162 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQVEF 209 (239)
Q Consensus 162 ERrRR~kIne~~~~LrsLVP~~--~k~~dKAsIL~eAIdYIk~LQ~qVe~ 209 (239)
||.|=..||+.|..|+.+||.. ++.++|..+|..||+||..||..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4667778999999999999975 44579999999999999999987653
No 19
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=80.46 E-value=3.5 Score=29.92 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 026390 197 INYIQSLQRQVEFLSMKLEAVNSRMNLTPT 226 (239)
Q Consensus 197 IdYIk~LQ~qVe~L~~~le~l~~~l~~~~~ 226 (239)
..||+.|+.+++.|+..|..+....+...+
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~~~~~~~ 76 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVDPTKIRG 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 359999999999999999999887754433
No 20
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=78.96 E-value=1.6 Score=29.89 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 026390 197 INYIQSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 197 IdYIk~LQ~qVe~L~~~le~l~~~l 221 (239)
-.||..|+.+++.|+..|+.|+..+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999998876
No 21
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=69.03 E-value=5.1 Score=27.68 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026390 190 ALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 190 AsIL~eAIdYIk~LQ~qVe~L~~~le~l~~~l 221 (239)
-..|+..++-+..|..++..|+.+++.++.++
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999887654
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.62 E-value=12 Score=25.97 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=9.5
Q ss_pred HHhHHHHHHHHHHHHHh
Q 026390 162 ERARREKISERMKILQD 178 (239)
Q Consensus 162 ERrRR~kIne~~~~Lrs 178 (239)
|+++|.+..+++.+.++
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 34555555666666554
No 23
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=63.94 E-value=3.8 Score=28.24 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 026390 197 INYIQSLQRQVEFLSMKLEAVNS 219 (239)
Q Consensus 197 IdYIk~LQ~qVe~L~~~le~l~~ 219 (239)
-.||..|+.+|+.|+..|+.+..
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999987653
No 24
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=54.47 E-value=8.3 Score=27.29 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 026390 197 INYIQSLQRQVEFLSMKLEAVNSRMNLT 224 (239)
Q Consensus 197 IdYIk~LQ~qVe~L~~~le~l~~~l~~~ 224 (239)
..||..|+.+++.|+..|..+.+..+++
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~l~ 71 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPREDLD 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhH
Confidence 3589999999999999999998876554
No 25
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.45 E-value=9.4 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q 026390 198 NYIQSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 198 dYIk~LQ~qVe~L~~~le~l~~~l 221 (239)
.||..|+.+|..|+.+...|..++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666665555554444
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=52.28 E-value=9.4 Score=25.49 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q 026390 198 NYIQSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 198 dYIk~LQ~qVe~L~~~le~l~~~l 221 (239)
.|+-.|+.+++.|+.....|+.++
T Consensus 3 aYl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888888888888888877766
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.90 E-value=17 Score=27.30 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026390 193 LDEIINYIQSLQRQVEFLSMKLEAVNS 219 (239)
Q Consensus 193 L~eAIdYIk~LQ~qVe~L~~~le~l~~ 219 (239)
++.||+-|.-||.+|++|+.+...+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888877666544
No 28
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=47.84 E-value=6.3 Score=27.61 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 026390 197 INYIQSLQRQVEFLSMKLEAVNS 219 (239)
Q Consensus 197 IdYIk~LQ~qVe~L~~~le~l~~ 219 (239)
-.||..|+.+|..|+..|..+.+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~~ 79 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVHS 79 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 47888899888888887776653
No 29
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=45.61 E-value=30 Score=28.28 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCC---CCCCChHhHHHHHHHHHHHH
Q 026390 168 KISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL 203 (239)
Q Consensus 168 kIne~~~~LrsLVP~~---~k~~dKAsIL~eAIdYIk~L 203 (239)
-|.-+|..|+.+||.. ...+-|-.||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 3677899999999854 33368999999999998876
No 30
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=40.35 E-value=56 Score=24.87 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026390 181 PGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 220 (239)
Q Consensus 181 P~~~k~~dKAsIL~eAIdYIk~LQ~qVe~L~~~le~l~~~ 220 (239)
|......+-..-|.++..-|..|+..+..++.-|+.++..
T Consensus 52 P~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 52 PQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp GGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4443333557788899999999999999999999988754
No 31
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=39.94 E-value=19 Score=25.30 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 026390 201 QSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 201 k~LQ~qVe~L~~~le~l~~~l 221 (239)
..|+.++..|..+++.|...+
T Consensus 40 ~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 40 EELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666655544
No 32
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.59 E-value=56 Score=21.61 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026390 193 LDEIINYIQSLQRQVEFLSMKLE 215 (239)
Q Consensus 193 L~eAIdYIk~LQ~qVe~L~~~le 215 (239)
+.+--+||+.|+.+..+|..-.+
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 45667899999998888765444
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.81 E-value=24 Score=24.29 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 026390 166 REKISERMKIL 176 (239)
Q Consensus 166 R~kIne~~~~L 176 (239)
|.+=++.+..|
T Consensus 17 R~rKk~~~~~L 27 (62)
T 1jnm_A 17 RKRKLERIARL 27 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333434443
No 34
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=35.41 E-value=30 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026390 193 LDEIINYIQSLQRQVEFLSMKLEA 216 (239)
Q Consensus 193 L~eAIdYIk~LQ~qVe~L~~~le~ 216 (239)
|..-|+-|++|+++...|+.++..
T Consensus 15 lAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 15 FANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344677788999999999888754
No 35
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.09 E-value=35 Score=24.60 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHh
Q 026390 166 REKISERMKILQD 178 (239)
Q Consensus 166 R~kIne~~~~Lrs 178 (239)
|++=...|..|..
T Consensus 24 ReRK~~~i~~LE~ 36 (70)
T 1gd2_E 24 RKRKEDHLKALET 36 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555554
No 36
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.81 E-value=26 Score=24.01 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026390 203 LQRQVEFLSMKLEAV 217 (239)
Q Consensus 203 LQ~qVe~L~~~le~l 217 (239)
|+.+|..|..++..|
T Consensus 41 L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 41 LQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 37
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.40 E-value=34 Score=25.70 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026390 193 LDEIINYIQSLQRQVEFLSMKLEAVNSR 220 (239)
Q Consensus 193 L~eAIdYIk~LQ~qVe~L~~~le~l~~~ 220 (239)
|..=|+-|++|+++++.|+.++..+..+
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445677889999999998888777643
No 38
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.36 E-value=1e+02 Score=19.99 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=25.9
Q ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026390 187 IGKALVLDEIINYIQSLQRQVEFLSMKLEAV 217 (239)
Q Consensus 187 ~dKAsIL~eAIdYIk~LQ~qVe~L~~~le~l 217 (239)
+.....|+++-+-|..|+.+++.|+.+.-++
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999999887665
No 39
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.24 E-value=13 Score=24.77 Aligned_cols=26 Identities=12% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 026390 197 INYIQSLQRQVEFLSMKLEAVNSRMN 222 (239)
Q Consensus 197 IdYIk~LQ~qVe~L~~~le~l~~~l~ 222 (239)
.|-+-.|+.+-+.|+.++.+++.+++
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd 33 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLE 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44556666666677766666666663
No 40
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=28.23 E-value=71 Score=19.86 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 026390 200 IQSLQRQVEFLSMKLEAVNS 219 (239)
Q Consensus 200 Ik~LQ~qVe~L~~~le~l~~ 219 (239)
++.|+.-|++|+.++..++.
T Consensus 8 ~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665553
No 41
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=25.40 E-value=89 Score=21.14 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=27.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 026390 189 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 189 KAsIL~eAIdYIk~LQ~qVe~L~~~le~l~~~l 221 (239)
-......+.+-|+.|.+++..+..++++++-++
T Consensus 14 lv~FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 14 IVKFQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667888999999999999999999987654
No 42
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=25.27 E-value=1.6e+02 Score=21.56 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChHhHH
Q 026390 166 REKISERMKILQDLVPGCNKVIGKALVL 193 (239)
Q Consensus 166 R~kIne~~~~LrsLVP~~~k~~dKAsIL 193 (239)
-..|+++|..|+.-.|.... .+..||
T Consensus 32 A~~vd~~~~~i~~~~~~~~~--~r~~vm 57 (104)
T 1t3u_A 32 ARYLDGKMREIRSSGKVIGA--DRVAVM 57 (104)
T ss_dssp HHHHHHHHHHHHTTTCSCSH--HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCH--HHHHHH
Confidence 45789999999998876654 455444
No 43
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.26 E-value=30 Score=20.85 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 026390 200 IQSLQRQVEFLSMKLEAVNSRM 221 (239)
Q Consensus 200 Ik~LQ~qVe~L~~~le~l~~~l 221 (239)
|+.|++....|.+++.+++.++
T Consensus 2 irrlkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHH
Confidence 4556666666776666666543
No 44
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.69 E-value=93 Score=24.00 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026390 193 LDEIINYIQSLQRQVEFLSMKLEAVN 218 (239)
Q Consensus 193 L~eAIdYIk~LQ~qVe~L~~~le~l~ 218 (239)
+++-++-++.|+.+++.|+.++++.+
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777888888888888877654
No 45
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.67 E-value=43 Score=19.99 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 026390 199 YIQSLQRQVEFLSMKLEAVNS 219 (239)
Q Consensus 199 YIk~LQ~qVe~L~~~le~l~~ 219 (239)
|+-+|+.+|.+|.-++.++..
T Consensus 1 yvyqlkdevgelkgevralkd 21 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKD 21 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHH
Confidence 455566666666666655543
No 46
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.62 E-value=67 Score=20.43 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026390 200 IQSLQRQVEFLSMKLEAV 217 (239)
Q Consensus 200 Ik~LQ~qVe~L~~~le~l 217 (239)
|..|++|+..|++++-.|
T Consensus 16 IddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 16 IDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 346667777777777654
No 47
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=21.37 E-value=1.1e+02 Score=18.10 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026390 191 LVLDEIINYIQSLQRQVE 208 (239)
Q Consensus 191 sIL~eAIdYIk~LQ~qVe 208 (239)
+-|-+|-.|+.+|++.++
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456688899999888764
No 48
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=20.80 E-value=51 Score=26.48 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=23.1
Q ss_pred hcCCCCCCCCChHhHHHHHHHHHHHHHHHHH
Q 026390 178 DLVPGCNKVIGKALVLDEIINYIQSLQRQVE 208 (239)
Q Consensus 178 sLVP~~~k~~dKAsIL~eAIdYIk~LQ~qVe 208 (239)
-++|+-....+ ...|..+++||+.|+++|.
T Consensus 216 ~i~pgHg~~~~-~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGG-PEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBS-THHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCC-HHHHHHHHHHHHHHHHHhc
Confidence 45676655544 5789999999999998874
No 49
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=20.38 E-value=95 Score=25.84 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCccCC
Q 026390 191 LVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN-LTPTIEGF 230 (239)
Q Consensus 191 sIL~eAIdYIk~LQ~qVe~L~~~le~l~~~l~-~~~~i~~~ 230 (239)
.+++.+|+-+..-+..+..|+.++++++.+++ +.|+-+.|
T Consensus 62 d~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Y 102 (158)
T 3tul_A 62 DLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGY 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 35677888888999999999999999999986 66654443
Done!