BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026393
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana
Has A Cytochrome B5 Like Fold
Length = 109
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 70/101 (69%)
Query: 69 LGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKM 128
L E T E+L QY+G+D KP+ +AIK +++DV+ + FYG GG Y++FAGKDASRAL KM
Sbjct: 9 LEEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKM 68
Query: 129 SFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKS 169
S E+D++ + GL E+ L DWE KF +KY VG + S
Sbjct: 69 SKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 109
>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
From Arabidopsis
Length = 102
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 69/99 (69%)
Query: 71 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSF 130
E T E+L QY+G+D KP+ +AIK +++DV+ + FYG GG Y++FAGKDASRAL KMS
Sbjct: 4 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSK 63
Query: 131 EEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKS 169
E+D++ + GL E+ L DWE KF +KY VG + S
Sbjct: 64 NEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 102
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 68 QLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALF--AGKDAS 122
+L E+TEEELK+++ D + I+ +Y+VS M Y PGG L AG D +
Sbjct: 4 RLIEVTEEELKKHNKKDD---CWICIRGFVYNVS-PYMEYHPGGEDELMRAAGSDGT 56
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 11 EAITAYTGLSPAAFFTVVALLWAIYYVLSG---------MFGSSDN-------HHQQRSR 54
E I TGL A+F+ + W + + +FG+ D+ Q
Sbjct: 122 EMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVT 181
Query: 55 EYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYA 114
+Y + + E +E L + S P + + S++Y ++S FYG P A
Sbjct: 182 DYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKS-NSEVYGHTRSYHFYGSEVPIA 240
Query: 115 LFAGKDASRALAKMSFEEKDLTGDISGLGPF 145
AG + +M+F EK + + G G F
Sbjct: 241 GMAGDQQAALFGQMAF-EKGMIKNTYGTGAF 270
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 11 EAITAYTGLSPAAFFTVVALLWAIYYVLSG---------MFGSSDN-------HHQQRSR 54
E I TGL A+F+ + W + + +FG+ D+ Q
Sbjct: 123 EMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVT 182
Query: 55 EYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYA 114
+Y + + E +E L + S P + + S++Y ++S FYG P A
Sbjct: 183 DYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKS-NSEVYGHTRSYRFYGSEVPIA 241
Query: 115 LFAGKDASRALAKMSFEEKDLTGDISGLGPF 145
AG + +M+F EK + + G G F
Sbjct: 242 GMAGDQQAALFGQMAF-EKGMIKNTYGTGAF 271
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 11 EAITAYTGLSPAAFFTVVALLWAIYYVLSG---------MFGSSDN-------HHQQRSR 54
E I TGL A+F+ + W + + +FG+ D+ Q
Sbjct: 122 EMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVT 181
Query: 55 EYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYA 114
+Y + + E +E L + S P + + S++Y ++S FYG P A
Sbjct: 182 DYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKS-NSEVYGHTRSYAFYGSEVPIA 240
Query: 115 LFAGKDASRALAKMSFEEKDLTGDISGLGPF 145
AG + +M+F EK + + G G F
Sbjct: 241 GMAGDQQAALFGQMAF-EKGMIKNTYGTGAF 270
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 11 EAITAYTGLSPAAFFTVVALLWAIYYVLSG---------MFGSSDN-------HHQQRSR 54
E I TGL A+F+ + W + + +FG+ D+ Q
Sbjct: 135 EMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVT 194
Query: 55 EYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYA 114
+Y + + E +E L + S P + + S++Y ++S FYG P A
Sbjct: 195 DYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKS-NSEVYGHTRSYRFYGSEVPIA 253
Query: 115 LFAGKDASRALAKMSFEEKDLTGDISGLGPF 145
AG + +M+F EK + + G G F
Sbjct: 254 GMAGDQQAALFGQMAF-EKGMIKNTYGTGAF 283
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 11 EAITAYTGLSPAAFFTVVALLWAIYYVLSG---------MFGSSDN-------HHQQRSR 54
E I TGL A+F+ + W + + +FG+ D+ Q
Sbjct: 118 EMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVT 177
Query: 55 EYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYA 114
+Y + + E +E L + S P + + S++Y ++S FYG P A
Sbjct: 178 DYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKS-NSEVYGHTRSYHFYGSEVPIA 236
Query: 115 LFAGKDASRALAKMSFEEKDLTGDISGLGPF 145
AG + +M+F EK + + G G F
Sbjct: 237 GMAGDQQAALFGQMAF-EKGMIKNTYGTGAF 266
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 18/151 (11%)
Query: 11 EAITAYTGLSPAAFFTVVALLWAIYYVLSG---------MFGSSDN-------HHQQRSR 54
E I TGL A+F+ + W + + +FG+ D+ Q
Sbjct: 123 EMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVT 182
Query: 55 EYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYA 114
+Y + + E +E L + S P + + S++Y ++S FYG P A
Sbjct: 183 DYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKS-NSEVYGHTRSYEFYGSEVPIA 241
Query: 115 LFAGKDASRALAKMSFEEKDLTGDISGLGPF 145
AG + +M+F EK + + G G F
Sbjct: 242 GMAGDQQAALFGQMAF-EKGMIKNTYGTGAF 271
>pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida
Tropicalis Peroxisomal Multifunctional Enzyme Type 2
Length = 604
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 117 AGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDG 176
AG R+ AKMS +E D + +G F L L W Y ++ ++ +I ST +
Sbjct: 403 AGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLA-WPYFVEKQFGRIINITSTSGIYGN 461
Query: 177 ASSGESTEPKEGVV 190
+ K G++
Sbjct: 462 FGQANYSSSKAGIL 475
>pdb|3QYG|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida.
pdb|3QYG|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-E56q
From Pseudomonas Putida
Length = 219
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 125 LAKMSFEEKDLTGDISGLGP---FELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGE 181
LA +F + I +GP E + W + F + V+ G + +T T A+SG+
Sbjct: 41 LANGNFNLDEFRHSIQRMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVATGKAASGK 100
Query: 182 STEPKEGVVDTPAESKGVVDTPA 204
+ P V TPA G++ T A
Sbjct: 101 TATP----VLTPAIVDGLLSTGA 119
>pdb|3QXE|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QXE|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudomonas Putida.
pdb|3QZ5|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida.
pdb|3QZ5|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Alpha-E168q
From Pseudomonas Putida
Length = 219
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 125 LAKMSFEEKDLTGDISGLGP---FELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGE 181
LA +F + I +GP E + W + F + V+ G + +T T A+SG+
Sbjct: 41 LANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVATGKAASGK 100
Query: 182 STEPKEGVVDTPAESKGVVDTPA 204
+ P V TPA G++ T A
Sbjct: 101 TATP----VLTPAIVDGLLSTGA 119
>pdb|3QZ9|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|D Chain D, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|F Chain F, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida.
pdb|3QZ9|H Chain H, Crystal Structure Of Co-Type Nitrile Hydratase Beta-Y215f
From Pseudomonas Putida
Length = 219
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 125 LAKMSFEEKDLTGDISGLGP---FELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGE 181
LA +F + I +GP E + W + F + V+ G + +T T A+SG+
Sbjct: 41 LANGNFNLDEFRHSIERMGPAHYLEGTYYEHWLHVFENLLVEKGVLTATEVATGKAASGK 100
Query: 182 STEPKEGVVDTPAESKGVVDTPA 204
+ P V TPA G++ T A
Sbjct: 101 TATP----VLTPAIVDGLLSTGA 119
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
Length = 133
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 47 NHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLL-----MAIKSQIYDVS 101
N +Q + ++QME + + EI E+ L G D + L+ IK+++ D S
Sbjct: 11 NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTS 70
Query: 102 QSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKF 157
+ M G G K+ A+ + ++ +L + +G L A+ D K
Sbjct: 71 EVIMSVGAGVAIK----KNFEDAMESIKSQKNELESTLQKMGE-NLRAITDIMMKL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,796,116
Number of Sequences: 62578
Number of extensions: 328784
Number of successful extensions: 563
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 26
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)