Query 026393
Match_columns 239
No_of_seqs 242 out of 892
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 07:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1110 Putative steroid membr 100.0 2.1E-43 4.6E-48 303.0 15.2 154 16-170 1-156 (183)
2 KOG1108 Predicted heme/steroid 100.0 2.3E-33 4.9E-38 249.8 7.8 115 69-183 59-173 (281)
3 PF00173 Cyt-b5: Cytochrome b5 99.6 1.4E-15 3.1E-20 110.6 6.5 73 71-167 1-75 (76)
4 COG4892 Predicted heme/steroid 99.5 3.8E-14 8.2E-19 107.0 5.1 75 70-170 2-78 (81)
5 KOG0536 Flavohemoprotein b5+b5 99.3 2.6E-12 5.6E-17 107.1 6.6 72 72-169 70-144 (145)
6 KOG0537 Cytochrome b5 [Energy 99.1 3.9E-11 8.5E-16 98.3 3.4 56 69-128 4-61 (124)
7 COG5274 CYB5 Cytochrome b invo 98.6 3.6E-08 7.8E-13 84.6 5.0 58 70-131 50-109 (164)
8 PLN03198 delta6-acyl-lipid des 98.5 9.3E-08 2E-12 94.3 3.7 56 69-128 103-159 (526)
9 PLN03199 delta6-acyl-lipid des 98.4 1.8E-07 4E-12 91.1 5.0 53 70-127 24-77 (485)
10 PLN02252 nitrate reductase [NA 98.3 6.8E-07 1.5E-11 93.0 5.7 55 69-127 517-573 (888)
11 KOG4232 Delta 6-fatty acid des 97.5 2.3E-05 5E-10 75.9 0.5 55 70-129 8-64 (430)
12 KOG4576 Sulfite oxidase, heme- 94.8 0.02 4.3E-07 48.9 2.4 47 70-119 80-127 (167)
13 PHA03049 IMV membrane protein; 60.6 14 0.00031 27.9 3.7 24 23-46 4-27 (68)
14 PF05961 Chordopox_A13L: Chord 55.3 25 0.00053 26.7 4.2 24 23-46 4-27 (68)
15 PF13068 DUF3932: Protein of u 54.4 16 0.00036 27.8 3.2 35 5-39 31-65 (81)
16 PF14901 Jiv90: Cleavage induc 51.8 9.8 0.00021 30.4 1.7 17 88-104 56-72 (94)
17 PF04272 Phospholamban: Phosph 42.8 31 0.00066 24.5 2.9 19 21-39 32-50 (52)
18 TIGR01294 P_lamban phospholamb 37.5 40 0.00087 23.9 2.8 19 21-39 32-50 (52)
19 PF12596 Tnp_P_element_C: 87kD 36.0 24 0.00051 28.8 1.7 31 139-169 71-102 (106)
20 PF10875 DUF2670: Protein of u 33.1 54 0.0012 27.7 3.4 36 5-40 1-43 (139)
21 PHA02902 putative IMV membrane 31.8 98 0.0021 23.5 4.2 13 69-81 51-63 (70)
22 PF15361 RIC3: Resistance to i 31.2 86 0.0019 26.7 4.4 21 22-42 86-106 (152)
23 PF07423 DUF1510: Protein of u 30.2 53 0.0012 29.7 3.1 23 22-44 16-38 (217)
24 PHA02681 ORF089 virion membran 26.9 1.4E+02 0.0031 23.7 4.6 14 69-82 49-62 (92)
25 PRK06549 acetyl-CoA carboxylas 25.8 43 0.00094 27.8 1.7 15 89-103 5-19 (130)
26 PF05393 Hum_adeno_E3A: Human 25.6 1.5E+02 0.0032 23.8 4.5 23 18-40 34-56 (94)
27 PF10717 ODV-E18: Occlusion-de 22.5 1.1E+02 0.0024 24.1 3.2 29 17-46 20-48 (85)
28 TIGR01683 thiS thiamine biosyn 22.0 1.3E+02 0.0029 21.1 3.4 30 71-101 13-42 (64)
29 PRK08053 sulfur carrier protei 21.8 1.4E+02 0.0031 21.1 3.6 34 71-105 15-48 (66)
30 cd00565 ThiS ThiaminS ubiquiti 21.4 1.4E+02 0.0031 20.9 3.5 33 71-104 14-46 (65)
31 PF06084 Cytomega_TRL10: Cytom 21.4 41 0.00088 28.3 0.7 55 19-84 60-114 (150)
32 PF09451 ATG27: Autophagy-rela 21.0 80 0.0017 28.7 2.6 20 23-42 205-224 (268)
33 PF06522 B12D: NADH-ubiquinone 20.7 1.2E+02 0.0026 22.6 3.0 28 19-46 6-33 (73)
34 PF07225 NDUF_B4: NADH-ubiquin 20.2 1.4E+02 0.0031 24.9 3.6 41 2-42 60-101 (125)
35 PRK07696 sulfur carrier protei 20.0 1.4E+02 0.0029 21.6 3.1 35 72-107 17-51 (67)
No 1
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=100.00 E-value=2.1e-43 Score=303.02 Aligned_cols=154 Identities=48% Similarity=0.797 Sum_probs=124.4
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHhcccCCC--CCcccccchhhhhccCCCCCCcccCCCCHHHHhhhcCCCCCCCEEEEE
Q 026393 16 YTGLSPAAFFTVVALLWAIYYVLSGMFGSS--DNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAI 93 (239)
Q Consensus 16 ~~g~sp~n~~tila~~~~ly~iv~~~f~~~--~~~~~~~~~~~e~~~~~l~~P~~~~~fT~eELa~ydG~~~~~piyvAI 93 (239)
|+|+++-.+++.++++++++.++..++-.. .++...++.. ..+.+|...+.+.+.||++||++|||.++++||||||
T Consensus 1 ~~gl~~~~~~tpl~~al~~~~l~~~~kl~~~~~r~~~~~~~~-~~~~~P~~~~P~~~dfT~eEL~~ydGs~~d~~Il~AI 79 (183)
T KOG1110|consen 1 YVGLAPKVFFTPLALALLIFLLFVGLKLSRFKFRRDSEKSDG-STEEPPKESLPKVRDFTVEELRQYDGSDPDKPILLAI 79 (183)
T ss_pred CCccchhhhhhhHHHHHHHHHHHhheeeeeeecccccccccc-CCCCCCccCCCcccccCHHHHHhcCCCCCCCceEEEe
Confidence 467777777777777777777766654332 1111111111 1111122222334589999999999999889999999
Q ss_pred cCeEEeccCCCcccCCCCcccccCCCchHHHHHhhcCCCcccCCCCCCCCHHHhhhHHHHHHHHhccCceeEEeccc
Q 026393 94 KSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKST 170 (239)
Q Consensus 94 ~G~VYDVT~~~~fYgPGG~Y~~fAGrDaSr~fa~~s~d~~dl~~dls~L~~~e~~~L~~W~~~f~~KYp~VG~Lv~~ 170 (239)
||+|||||+|+.||||||+|..||||||||+|++||++..++++|++||+..|+++|++|+++|+.||++||+|++.
T Consensus 80 ~G~VYDVT~Gr~FYGp~GpY~~fAG~DASR~La~~s~d~~d~~ddlsdL~a~e~eal~eWE~~fk~KY~~VG~L~~~ 156 (183)
T KOG1110|consen 80 NGKVYDVTRGREFYGPGGPYSLFAGKDASRGLAKMSFDLSDETDDLSDLTAEELEALNEWETKFKAKYPVVGRLVKK 156 (183)
T ss_pred cceEEEecCCccccCCCCCchhhcccchHHHHHhcccchhhccccccccCHHHHHHHHHHHHHHhhcCceeEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=249.83 Aligned_cols=115 Identities=37% Similarity=0.617 Sum_probs=111.4
Q ss_pred cCCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCcccccCCCchHHHHHhhcCCCcccCCCCCCCCHHHhh
Q 026393 69 LGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELE 148 (239)
Q Consensus 69 ~~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~Y~~fAGrDaSr~fa~~s~d~~dl~~dls~L~~~e~~ 148 (239)
++.||++||++|||.+.++|||+||.|.|||||+++.|||||++|++||||||||+|.++.|.+..+.+|+.+|++.|+.
T Consensus 59 k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFvsGdf~e~gl~d~v~gLs~dEll 138 (281)
T KOG1108|consen 59 KILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFVSGDFEEPGLADDVLGLSPDELL 138 (281)
T ss_pred ceeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchheecccCCCCcchhhhccCCHHHHh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCceeEEecccccCCCCCCCCCCC
Q 026393 149 ALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGEST 183 (239)
Q Consensus 149 ~L~~W~~~f~~KYp~VG~Lv~~~~~~dg~~t~e~~ 183 (239)
+|.+|..||.+.|++||+|+++||+++|.+|.+..
T Consensus 139 si~dWrsFY~k~Y~~vGrv~gryYds~G~pT~~lt 173 (281)
T KOG1108|consen 139 SIADWRSFYQKDYVYVGRVIGRYYDSKGAPTPYLT 173 (281)
T ss_pred hhhhhhhhhhcccceeeEEeeeeecCCCCCcHHHH
Confidence 99999999999999999999999999999998744
No 3
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.61 E-value=1.4e-15 Score=110.63 Aligned_cols=73 Identities=34% Similarity=0.461 Sum_probs=61.8
Q ss_pred CCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCC--cccccCCCchHHHHHhhcCCCcccCCCCCCCCHHHhh
Q 026393 71 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGG--PYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELE 148 (239)
Q Consensus 71 ~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG--~Y~~fAGrDaSr~fa~~s~d~~dl~~dls~L~~~e~~ 148 (239)
+||++||++|| . +.++||+|+|+|||||.+. .++||| .+..+||+|+|.+| +..
T Consensus 1 ~~t~~el~~h~-~--~~~~~v~i~g~VYDvt~~~-~~hpgg~~~~~~~aG~D~T~~f--------------------~~~ 56 (76)
T PF00173_consen 1 VYTWEELAKHN-K--KGDCWVIIDGKVYDVTDFL-DRHPGGADILKKYAGRDATDAF--------------------EEA 56 (76)
T ss_dssp EEEHHHHTTTE-E--TTEEEEEETTEEEECTTTT-TTSTTTSHHHHTTTTSBTHHHH--------------------HHH
T ss_pred CCCHHHHhhhC-C--CCCEEEEECCEEccccccc-ccccchhHHHHHhccccccHHH--------------------hhc
Confidence 38999999999 2 2579999999999999976 578999 68999999999999 223
Q ss_pred hHHHHHHHHhccCceeEEe
Q 026393 149 ALQDWEYKFMSKYVKVGSI 167 (239)
Q Consensus 149 ~L~~W~~~f~~KYp~VG~L 167 (239)
....|..++..+|.+||+|
T Consensus 57 ~h~~~~~~~l~~~~~vG~l 75 (76)
T PF00173_consen 57 FHSWWAEKCLEKYYKVGYL 75 (76)
T ss_dssp THHHHHHHHHHGCGEEEEE
T ss_pred cCcHHHHHHccCCCEEEEe
Confidence 3457888888999999997
No 4
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.48 E-value=3.8e-14 Score=106.98 Aligned_cols=75 Identities=33% Similarity=0.551 Sum_probs=58.2
Q ss_pred CCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCccccc-CCCchHHHHHh-hcCCCcccCCCCCCCCHHHh
Q 026393 70 GEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALF-AGKDASRALAK-MSFEEKDLTGDISGLGPFEL 147 (239)
Q Consensus 70 ~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~Y~~f-AGrDaSr~fa~-~s~d~~dl~~dls~L~~~e~ 147 (239)
|.||++||++|||.++ |+|||++|+|||||.+..| +-|-+...+ ||+|.|..|.. ...- +
T Consensus 2 refTLEELs~ynG~nG--paYiA~~G~VYDvS~s~~W-~dGtHqglhsaG~DLs~~~~~~aphg---------------~ 63 (81)
T COG4892 2 REFTLEELSKYNGENG--PAYIAVNGTVYDVSLSPSW-GDGTHQGLHSAGKDLSSEFNSCAPHG---------------M 63 (81)
T ss_pred ceecHHHHHhhcCCCC--CeEEEECCEEEeeccCccc-CCCccccccccchhHHHHHhhcCCch---------------h
Confidence 5799999999999985 8999999999999998754 434455555 99999998873 2211 2
Q ss_pred hhHHHHHHHHhccCceeEEeccc
Q 026393 148 EALQDWEYKFMSKYVKVGSIKST 170 (239)
Q Consensus 148 ~~L~~W~~~f~~KYp~VG~Lv~~ 170 (239)
+. -+.||+||.|++.
T Consensus 64 ei--------l~~~PvVG~L~k~ 78 (81)
T COG4892 64 EI--------LTSLPVVGALIKE 78 (81)
T ss_pred HH--------HhcCchhheeecc
Confidence 22 3789999999875
No 5
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.32 E-value=2.6e-12 Score=107.11 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=60.8
Q ss_pred CCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCc--ccccCCCchHHHHHhhcCCCcccCCCCCCCCHHHhhh
Q 026393 72 ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGP--YALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEA 149 (239)
Q Consensus 72 fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~--Y~~fAGrDaSr~fa~~s~d~~dl~~dls~L~~~e~~~ 149 (239)
+|.+||++||..++ |||+|+|+|||||.+.. |||||. ....||+|||..|.+.
T Consensus 70 vt~~El~KH~~~dD---cW~~i~G~VYnVt~Yl~-fHPgG~d~lmk~aGrD~T~~Fnk~--------------------- 124 (145)
T KOG0536|consen 70 VTAEELKKHNKKDD---CWIAIRGKVYNVTAYLD-FHPGGVDELMKHAGRDATKLFNKY--------------------- 124 (145)
T ss_pred cCHHHHHhhCCccc---eEEEEcCEEEecccccc-cCCCCHHHHHHhcCcchHHHHHHH---------------------
Confidence 89999999999875 99999999999999975 899997 6789999999999875
Q ss_pred HHHHHHHH-hccCceeEEecc
Q 026393 150 LQDWEYKF-MSKYVKVGSIKS 169 (239)
Q Consensus 150 L~~W~~~f-~~KYp~VG~Lv~ 169 (239)
..|++.- .=+=-+||.|++
T Consensus 125 -H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 125 -HAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred -HHHhcHHHHHhhceeeeecc
Confidence 7788532 224568898875
No 6
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.11 E-value=3.9e-11 Score=98.27 Aligned_cols=56 Identities=30% Similarity=0.435 Sum_probs=47.6
Q ss_pred cCCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCc--ccccCCCchHHHHHhh
Q 026393 69 LGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGP--YALFAGKDASRALAKM 128 (239)
Q Consensus 69 ~~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~--Y~~fAGrDaSr~fa~~ 128 (239)
.+.||++|.++||..++ |||.|+|+|||||++.. -||||. ...+||+|||++|--.
T Consensus 4 ~k~~~~~EV~kHn~~~d---~Wvii~gkVYDvT~Fl~-eHPGG~~vLl~~AGkDaT~~F~~~ 61 (124)
T KOG0537|consen 4 LKYYTLSEVAKHNKKDD---CWVIIHGKVYDVTSFLD-EHPGGEDVLLEYAGKDATEAFEDV 61 (124)
T ss_pred cccccHHHHHhhcCCCC---eEEEECCEEEeccchhh-hCCChHHHHHHHhchhhHHhcccc
Confidence 36799999999997754 99999999999999853 478884 6799999999999643
No 7
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=98.64 E-value=3.6e-08 Score=84.63 Aligned_cols=58 Identities=34% Similarity=0.450 Sum_probs=49.4
Q ss_pred CCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCc--ccccCCCchHHHHHhhcCC
Q 026393 70 GEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGP--YALFAGKDASRALAKMSFE 131 (239)
Q Consensus 70 ~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~--Y~~fAGrDaSr~fa~~s~d 131 (239)
..++.+|+.+|+..++ +||+|+|+|||||.+.. +||||. ....+|+|||.+|...-.+
T Consensus 50 ~~~~~eev~~h~~~~d---~~ivi~g~VyDvs~fl~-~HPGGe~ii~~~~g~Dat~~f~~~~~~ 109 (164)
T COG5274 50 KPITAEEVAKHNKSED---CWIVINGKVYDVSQFLD-EHPGGEDIIKDTAGKDATKAFNFLHHS 109 (164)
T ss_pred ccccHHHHHHhcCccc---eEEEEcCEEEEhhhccc-cCCCcceeehhccCchhhhhhcccccc
Confidence 4589999999999864 99999999999999853 688886 5689999999999865443
No 8
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=98.47 E-value=9.3e-08 Score=94.33 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=47.8
Q ss_pred cCCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCc-ccccCCCchHHHHHhh
Q 026393 69 LGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGP-YALFAGKDASRALAKM 128 (239)
Q Consensus 69 ~~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~-Y~~fAGrDaSr~fa~~ 128 (239)
.+.||.+|+++|+..++ |||+|+|+|||||++.. .||||. ...+||+|||..|...
T Consensus 103 ~~~~t~~ev~~H~~~~d---~Wivi~gkVYDvT~fl~-~HPGG~~i~~~aG~DaT~~F~~~ 159 (526)
T PLN03198 103 SKSHLLSEVAAHNKPND---CWIVIKNKVYDVSDFAA-EHPGGSVISTYFGRDGTDAFSSF 159 (526)
T ss_pred cCcCCHHHHHhhCCCCC---eEEEECCEEEecHHHHH-hCCCchHHHHhcCCcHhHHHHHh
Confidence 45899999999998754 99999999999998753 589997 3479999999999653
No 9
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=98.45 E-value=1.8e-07 Score=91.05 Aligned_cols=53 Identities=28% Similarity=0.420 Sum_probs=46.3
Q ss_pred CCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCc-ccccCCCchHHHHHh
Q 026393 70 GEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGP-YALFAGKDASRALAK 127 (239)
Q Consensus 70 ~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~-Y~~fAGrDaSr~fa~ 127 (239)
+.||.+|+++|+..+ .+||.|+|+|||||++. .||||. ...+||+|||..|..
T Consensus 24 ~~~s~~ev~~h~~~~---~~wi~i~g~vYDvt~f~--~HPGG~~i~~~aG~DaT~~F~~ 77 (485)
T PLN03199 24 QKISWQEVKKHASPD---DAWIIHQNKVYDVSNWH--DHPGGAVIFTHAGDDMTDIFAA 77 (485)
T ss_pred CccCHHHHHhhCCCC---CeEEEECCEEEcCCCcC--cCCCchHHHhhCCCChhHHHHH
Confidence 569999999999875 39999999999999984 599997 347899999999965
No 10
>PLN02252 nitrate reductase [NADPH]
Probab=98.31 E-value=6.8e-07 Score=93.02 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=48.0
Q ss_pred cCCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCc--ccccCCCchHHHHHh
Q 026393 69 LGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGP--YALFAGKDASRALAK 127 (239)
Q Consensus 69 ~~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~--Y~~fAGrDaSr~fa~ 127 (239)
.+.||.+||++|+..+ .+||+|+|+|||||.+.. .||||. ...+||+|||..|..
T Consensus 517 ~~~~t~~ev~~h~~~~---~~Wivi~g~VYDvT~fl~-~HPGG~~~I~~~aG~DaT~~F~~ 573 (888)
T PLN02252 517 SKQYTMSEVRKHNSED---SCWIVVHGHVYDCTRFLK-DHPGGADSILINAGTDCTEEFDA 573 (888)
T ss_pred cceeCHHHHHhhCcCC---CeEEEECCEEEeCHHHHH-HCCChHHHHHhhcCCCcHHHHhh
Confidence 4779999999999875 399999999999999853 589995 678999999999974
No 11
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=97.53 E-value=2.3e-05 Score=75.88 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=47.7
Q ss_pred CCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCc--ccccCCCchHHHHHhhc
Q 026393 70 GEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGP--YALFAGKDASRALAKMS 129 (239)
Q Consensus 70 ~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~--Y~~fAGrDaSr~fa~~s 129 (239)
+.+|.++++++|+.++ .|++|.| |||+|.... -+|||+ ..+++|.|||.+|...-
T Consensus 8 ~~~~we~~~~~~~~~~---~W~~id~-vYd~s~~~~-~HPGG~~~I~~~~g~DaTdaF~AfH 64 (430)
T KOG4232|consen 8 TTFSWEGKRKHDKAEG---LWLVIDG-VYDISDWIK-RHPGGSRVIEHYAGQDATDAFEAFH 64 (430)
T ss_pred eeeeccchhhccCCCc---eEEEeec-cccHHHHHH-hCCCchhHHHHhcCCccchHHHHhC
Confidence 4689999999999975 9999999 999999832 479996 68999999999998764
No 12
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=94.81 E-value=0.02 Score=48.86 Aligned_cols=47 Identities=28% Similarity=0.363 Sum_probs=37.9
Q ss_pred CCCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCcccCCCCcc-cccCCC
Q 026393 70 GEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPY-ALFAGK 119 (239)
Q Consensus 70 ~~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fYgPGG~Y-~~fAGr 119 (239)
..|+.+|+++|+... .+|||-..--|||||.+.. -+|||.- ..-||-
T Consensus 80 ~iY~~EEV~~H~s~e--~rIWVTyg~gVyDVTdFv~-~HPGGdKillAAG~ 127 (167)
T KOG4576|consen 80 HIYTKEEVSSHTSPE--TRIWVTYGSGVYDVTDFVD-LHPGGDKILLAAGG 127 (167)
T ss_pred cchhHHHHHhcCCCc--cceEEEecCcceeHHHHHH-hCCCcceeeeecCC
Confidence 459999999998875 4799999999999999864 5789864 445553
No 13
>PHA03049 IMV membrane protein; Provisional
Probab=60.63 E-value=14 Score=27.92 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCC
Q 026393 23 AFFTVVALLWAIYYVLSGMFGSSD 46 (239)
Q Consensus 23 n~~tila~~~~ly~iv~~~f~~~~ 46 (239)
.++++++|.+++..|++..+..+.
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 356777788888888877776554
No 14
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=55.29 E-value=25 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCC
Q 026393 23 AFFTVVALLWAIYYVLSGMFGSSD 46 (239)
Q Consensus 23 n~~tila~~~~ly~iv~~~f~~~~ 46 (239)
.++++++|.+++..|++.++.++.
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 567778888888888877775544
No 15
>PF13068 DUF3932: Protein of unknown function (DUF3932)
Probab=54.42 E-value=16 Score=27.82 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHh
Q 026393 5 LWETLKEAITAYTGLSPAAFFTVVALLWAIYYVLS 39 (239)
Q Consensus 5 ~~~~~~e~i~~~~g~sp~n~~tila~~~~ly~iv~ 39 (239)
.|.+|||+|..||-.---.-+---+...+-||.-+
T Consensus 31 ~wttlkeliheytt~htn~tlp~yiss~~tyyaqr 65 (81)
T PF13068_consen 31 EWTTLKELIHEYTTSHTNQTLPEYISSSITYYAQR 65 (81)
T ss_pred chhHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 59999999999987543222222233444555443
No 16
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=51.85 E-value=9.8 Score=30.38 Aligned_cols=17 Identities=12% Similarity=0.448 Sum_probs=13.9
Q ss_pred CEEEEEcCeEEeccCCC
Q 026393 88 PLLMAIKSQIYDVSQSR 104 (239)
Q Consensus 88 piyvAI~G~VYDVT~~~ 104 (239)
..|+-.+|+|||+|...
T Consensus 56 ~yy~c~~g~VyDiTeWA 72 (94)
T PF14901_consen 56 TYYACMDGKVYDITEWA 72 (94)
T ss_pred EEEEEcCceEEehhhhh
Confidence 36778899999999753
No 17
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=42.76 E-value=31 Score=24.51 Aligned_cols=19 Identities=16% Similarity=0.210 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 026393 21 PAAFFTVVALLWAIYYVLS 39 (239)
Q Consensus 21 p~n~~tila~~~~ly~iv~ 39 (239)
-+||-++++|++++|.|+-
T Consensus 32 fvnfclilicllli~iiv~ 50 (52)
T PF04272_consen 32 FVNFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3688899999999988764
No 18
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=37.48 E-value=40 Score=23.93 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 026393 21 PAAFFTVVALLWAIYYVLS 39 (239)
Q Consensus 21 p~n~~tila~~~~ly~iv~ 39 (239)
-+||-++++|+++++.|+.
T Consensus 32 fvnf~lilicllli~iivm 50 (52)
T TIGR01294 32 FINFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4688899999998888764
No 19
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=35.95 E-value=24 Score=28.76 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCCCCHHHhhhHHHHHH-HHhccCceeEEecc
Q 026393 139 ISGLGPFELEALQDWEY-KFMSKYVKVGSIKS 169 (239)
Q Consensus 139 ls~L~~~e~~~L~~W~~-~f~~KYp~VG~Lv~ 169 (239)
+..+...-++.+.+|+. +|+.|||.+|.+..
T Consensus 71 ~~e~e~d~l~YiaGyVa~k~~~k~p~L~~~t~ 102 (106)
T PF12596_consen 71 LDEIEEDGLEYIAGYVAKKFRNKYPNLGDYTC 102 (106)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCchhheee
Confidence 34466777888999995 79999999998754
No 20
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=33.09 E-value=54 Score=27.73 Aligned_cols=36 Identities=31% Similarity=0.592 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHh-hCCChHHH------HHHHHHHHHHHHHHhc
Q 026393 5 LWETLKEAITAY-TGLSPAAF------FTVVALLWAIYYVLSG 40 (239)
Q Consensus 5 ~~~~~~e~i~~~-~g~sp~n~------~tila~~~~ly~iv~~ 40 (239)
.|+.||.+|.+- +|+.+-.+ ++.++.++++||++.+
T Consensus 1 mwqalrrlIaaNPMg~flw~iItKWyL~IavaSlI~lyy~v~g 43 (139)
T PF10875_consen 1 MWQALRRLIAANPMGFFLWSIITKWYLIIAVASLITLYYTVLG 43 (139)
T ss_pred ChHHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 388999888542 23332222 1333457778888765
No 21
>PHA02902 putative IMV membrane protein; Provisional
Probab=31.82 E-value=98 Score=23.46 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=10.1
Q ss_pred cCCCCHHHHhhhc
Q 026393 69 LGEITEEELKQYD 81 (239)
Q Consensus 69 ~~~fT~eELa~yd 81 (239)
...+|++|++++.
T Consensus 51 ~D~lTpDQirAlH 63 (70)
T PHA02902 51 KDSLTPDQIKALH 63 (70)
T ss_pred hccCCHHHHHHHH
Confidence 3579999998764
No 22
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=31.24 E-value=86 Score=26.66 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 026393 22 AAFFTVVALLWAIYYVLSGMF 42 (239)
Q Consensus 22 ~n~~tila~~~~ly~iv~~~f 42 (239)
+.+++|.++++++|.++...+
T Consensus 86 mPlYtiGI~~f~lY~l~Ki~~ 106 (152)
T PF15361_consen 86 MPLYTIGIVLFILYTLFKIKK 106 (152)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 456888888888888887643
No 23
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=30.18 E-value=53 Score=29.68 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC
Q 026393 22 AAFFTVVALLWAIYYVLSGMFGS 44 (239)
Q Consensus 22 ~n~~tila~~~~ly~iv~~~f~~ 44 (239)
+|++|.++++++++..+..||+.
T Consensus 16 LNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 16 LNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred HHHHHHHHHHHHHHHhhhheecC
Confidence 57777777766666666666644
No 24
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=26.91 E-value=1.4e+02 Score=23.68 Aligned_cols=14 Identities=7% Similarity=0.499 Sum_probs=11.1
Q ss_pred cCCCCHHHHhhhcC
Q 026393 69 LGEITEEELKQYDG 82 (239)
Q Consensus 69 ~~~fT~eELa~ydG 82 (239)
...+|.+|++++..
T Consensus 49 ~D~lTpDQVrAlHR 62 (92)
T PHA02681 49 EDKMTDDQVRAFHA 62 (92)
T ss_pred hccCCHHHHHHHHH
Confidence 35799999998863
No 25
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=25.79 E-value=43 Score=27.81 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=12.6
Q ss_pred EEEEEcCeEEeccCC
Q 026393 89 LLMAIKSQIYDVSQS 103 (239)
Q Consensus 89 iyvAI~G~VYDVT~~ 103 (239)
.=|-|||++|||+--
T Consensus 5 ~~itvng~~y~V~ve 19 (130)
T PRK06549 5 FKITIDGKEYLVEME 19 (130)
T ss_pred EEEEECCEEEEEEEE
Confidence 568899999999854
No 26
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.63 E-value=1.5e+02 Score=23.77 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=14.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHhc
Q 026393 18 GLSPAAFFTVVALLWAIYYVLSG 40 (239)
Q Consensus 18 g~sp~n~~tila~~~~ly~iv~~ 40 (239)
|+....+..+++|++++|++.+.
T Consensus 34 gm~~lvI~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 34 GMWFLVICGIFILLVILWFVCCK 56 (94)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 44444455666778888887775
No 27
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=22.50 E-value=1.1e+02 Score=24.13 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=18.9
Q ss_pred hCCChHHHHHHHHHHHHHHHHHhcccCCCC
Q 026393 17 TGLSPAAFFTVVALLWAIYYVLSGMFGSSD 46 (239)
Q Consensus 17 ~g~sp~n~~tila~~~~ly~iv~~~f~~~~ 46 (239)
.++.|-.|.+||+.++++..++- +|.+++
T Consensus 20 ~~l~pn~lMtILivLVIIiLlIm-lfqsSS 48 (85)
T PF10717_consen 20 NGLNPNTLMTILIVLVIIILLIM-LFQSSS 48 (85)
T ss_pred cccChhHHHHHHHHHHHHHHHHH-HHhccC
Confidence 67888777777777666665554 455443
No 28
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=21.96 E-value=1.3e+02 Score=21.10 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCCHHHHhhhcCCCCCCCEEEEEcCeEEecc
Q 026393 71 EITEEELKQYDGSDSKKPLLMAIKSQIYDVS 101 (239)
Q Consensus 71 ~fT~eELa~ydG~~~~~piyvAI~G~VYDVT 101 (239)
..|..+|.++-+-+. +.+-|++||++-.=+
T Consensus 13 ~~tv~~ll~~l~~~~-~~v~v~vN~~iv~~~ 42 (64)
T TIGR01683 13 GLTLAALLESLGLDP-RRVAVAVNGEIVPRS 42 (64)
T ss_pred CCcHHHHHHHcCCCC-CeEEEEECCEEcCHH
Confidence 368999999888775 679999999996433
No 29
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=21.78 E-value=1.4e+02 Score=21.15 Aligned_cols=34 Identities=24% Similarity=0.037 Sum_probs=25.6
Q ss_pred CCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCc
Q 026393 71 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRM 105 (239)
Q Consensus 71 ~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~ 105 (239)
..|..+|.++-+.+. +.+-||+||.|-.=+.+..
T Consensus 15 ~~tl~~ll~~l~~~~-~~vaVavN~~iv~r~~w~~ 48 (66)
T PRK08053 15 GQTVHELLEQLNQLQ-PGAALAINQQIIPREQWAQ 48 (66)
T ss_pred CCCHHHHHHHcCCCC-CcEEEEECCEEeChHHcCc
Confidence 378999998877764 5699999999976554433
No 30
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=21.43 E-value=1.4e+02 Score=20.93 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=25.8
Q ss_pred CCCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCC
Q 026393 71 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSR 104 (239)
Q Consensus 71 ~fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~ 104 (239)
..|..+|.++-+-+. ..+-|++||++-+-+.+.
T Consensus 14 ~~tv~~ll~~l~~~~-~~i~V~vNg~~v~~~~~~ 46 (65)
T cd00565 14 GATLAELLEELGLDP-RGVAVALNGEIVPRSEWA 46 (65)
T ss_pred CCCHHHHHHHcCCCC-CcEEEEECCEEcCHHHcC
Confidence 368999998888765 579999999997666443
No 31
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=21.38 E-value=41 Score=28.33 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhccCCCCCCcccCCCCHHHHhhhcCCC
Q 026393 19 LSPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSD 84 (239)
Q Consensus 19 ~sp~n~~tila~~~~ly~iv~~~f~~~~~~~~~~~~~~e~~~~~l~~P~~~~~fT~eELa~ydG~~ 84 (239)
.-+-.|+..|++++++||+++..=...+ +.. .. ..+-+..|.+|.+.|-+|-.+.
T Consensus 60 wgagsfiatliillviffviy~re~~~~--~~g--------t~-~d~~layr~ltrkkl~~ha~kk 114 (150)
T PF06084_consen 60 WGAGSFIATLIILLVIFFVIYSREEEKN--NNG--------TE-VDQCLAYRSLTRKKLEQHASKK 114 (150)
T ss_pred cccchHHHHHHHHHHHhheeEecccccc--CCC--------ce-echhhHHHHHHHHHHHHHHHhh
Confidence 3355677666777777777654111110 000 00 0111344789999999998764
No 32
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=21.05 E-value=80 Score=28.68 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 026393 23 AFFTVVALLWAIYYVLSGMF 42 (239)
Q Consensus 23 n~~tila~~~~ly~iv~~~f 42 (239)
.||+++++++++|+|+..++
T Consensus 205 wl~i~~~l~~~~Y~i~g~~~ 224 (268)
T PF09451_consen 205 WLFIILFLFLAAYLIFGSWY 224 (268)
T ss_pred HHHHHHHHHHHHHhhhhhhe
Confidence 45556666667777777655
No 33
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=20.74 E-value=1.2e+02 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHHHHHHhcccCCCC
Q 026393 19 LSPAAFFTVVALLWAIYYVLSGMFGSSD 46 (239)
Q Consensus 19 ~sp~n~~tila~~~~ly~iv~~~f~~~~ 46 (239)
+-|+-+++-++++.++|+++..++..++
T Consensus 6 l~PL~~~vg~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4488888888999999999987765554
No 34
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=20.17 E-value=1.4e+02 Score=24.86 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=28.5
Q ss_pred hHHHHHHHHH-HHHHhhCCChHHHHHHHHHHHHHHHHHhccc
Q 026393 2 ALQLWETLKE-AITAYTGLSPAAFFTVVALLWAIYYVLSGMF 42 (239)
Q Consensus 2 a~~~~~~~~e-~i~~~~g~sp~n~~tila~~~~ly~iv~~~f 42 (239)
||+-|...+. .+-.+.=.+|-+.++.++++++..++...++
T Consensus 60 AL~Rw~~a~~~~~y~~FRpTPktsllg~~~~v~P~i~~~~~~ 101 (125)
T PF07225_consen 60 ALQRWAYARAVNIYEYFRPTPKTSLLGLGFGVVPLIFYYYVL 101 (125)
T ss_pred HHHHHHHHHHhCcccccccCchHHHHHHHHHHHHHHHHHhhh
Confidence 7888977776 5878888888887777766555555544433
No 35
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=20.02 E-value=1.4e+02 Score=21.61 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=28.1
Q ss_pred CCHHHHhhhcCCCCCCCEEEEEcCeEEeccCCCccc
Q 026393 72 ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFY 107 (239)
Q Consensus 72 fT~eELa~ydG~~~~~piyvAI~G~VYDVT~~~~fY 107 (239)
.|..+|.++-|-++ +.+-|++||.|..=+.+..++
T Consensus 17 ~tv~~lL~~l~~~~-~~vav~vN~~iv~r~~w~~~~ 51 (67)
T PRK07696 17 KTVAELLTHLELDN-KIVVVERNKDILQKDDHTDTS 51 (67)
T ss_pred ccHHHHHHHcCCCC-CeEEEEECCEEeCHHHcCcee
Confidence 57999999888875 579999999998777665544
Done!