BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026395
(239 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 173/235 (73%), Positives = 195/235 (82%), Gaps = 8/235 (3%)
Query: 4 IQFQAHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVL 63
+ Q H + W+S S S S K+LALKP + +L S CKASWQELAGVL
Sbjct: 3 VLLQPHPSFSWISSSLFSQGS------KLLALKP--RKILFNGNPSSPCKASWQELAGVL 54
Query: 64 VFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPR 123
VFSAIPFTAVKA+ANSPLGE LQ R+ E+KK A+++SSKF+AL +AR ESLWYGEERPR
Sbjct: 55 VFSAIPFTAVKALANSPLGESLQRRLEESKKVAVKESSKFQALTAKARKESLWYGEERPR 114
Query: 124 WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPE 183
WLGPIPYDYP+YLTGELPGDYGFDVAGLSKD +AFQ+YFNFEILHARWAML ALGAL PE
Sbjct: 115 WLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPE 174
Query: 184 VLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
VLD+ GAFH +EPVWWRVGYSKL+G+TLDYLGIPGLH AGSQGV+VIAICQALLM
Sbjct: 175 VLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQALLM 229
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/209 (74%), Positives = 179/209 (85%), Gaps = 1/209 (0%)
Query: 30 RKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRM 89
++I +P R + + +S +C+ASWQELAGVLVFSAIPFTAVKAIANS LGE L+ R+
Sbjct: 24 QRIYVPEPPRSRIAVT-RSRSICRASWQELAGVLVFSAIPFTAVKAIANSSLGESLRRRL 82
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
E KK A+++SS+FKA A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+A
Sbjct: 83 EEKKKEAVENSSRFKAKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIA 142
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GL KD + F KYFNFEILHARWAML ALGAL+PEVLD+ GAFH EPVWWRVGYSKLQGE
Sbjct: 143 GLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGE 202
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
TLDYLGIPGLH+AGSQGVIVIAICQ LLM
Sbjct: 203 TLDYLGIPGLHVAGSQGVIVIAICQVLLM 231
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/188 (80%), Positives = 172/188 (91%)
Query: 51 VCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQA 110
+CKASWQELAGV++FSAIPFTAVKAIANSPLGE LQ R+ E KK A+Q SSKFKALA++A
Sbjct: 51 ICKASWQELAGVVIFSAIPFTAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKA 110
Query: 111 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 170
R ES WYGEERPRWLGPI Y YP+YL+GELPGDYGFDVAGL++DP+AFQ+YFNFEILHAR
Sbjct: 111 RKESFWYGEERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHAR 170
Query: 171 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
WAML ALGAL+PEVLD+ GAFH +EPVWWRVGYSKL+G+TLDYLGIPGLH AG QGV+VI
Sbjct: 171 WAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVI 230
Query: 231 AICQALLM 238
A CQA+LM
Sbjct: 231 AFCQAILM 238
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 154/208 (74%), Positives = 179/208 (86%), Gaps = 4/208 (1%)
Query: 35 LKPSRKNLLLKPKSSL----VCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRML 90
+P L L+ S+ C+ASWQELAGVL+FSAIPFTAVKAIANSPLG LQ ++
Sbjct: 28 FRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLE 87
Query: 91 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+ K +A+ +SSKFKALA +AR +S WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+AG
Sbjct: 88 KKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAG 147
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS+DP+AFQK+FNFEILHARWAML +LGALVPE+LD+ GAFH EP+WWRVGYSKL+G+T
Sbjct: 148 LSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDT 207
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLGIPGLHLAGSQGVIVIAICQA+LM
Sbjct: 208 LDYLGIPGLHLAGSQGVIVIAICQAILM 235
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 154/208 (74%), Positives = 179/208 (86%), Gaps = 4/208 (1%)
Query: 35 LKPSRKNLLLKPKSSL----VCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRML 90
+P L L+ S+ C+ASWQELAGVL+FSAIPFTAVKAIANSPLG LQ ++
Sbjct: 28 FRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLE 87
Query: 91 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+ K +A+ +SSKFKALA +AR +S WYGEERPRWLGP+PYDYP YLTGELPGDYGFD+AG
Sbjct: 88 KKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAG 147
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS+DP+AFQK+FNFEILHARWAML +LGALVPE+LD+ GAFH EP+WWRVGYSKL+G+T
Sbjct: 148 LSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDT 207
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLGIPGLHLAGSQGVIVIAICQA+LM
Sbjct: 208 LDYLGIPGLHLAGSQGVIVIAICQAILM 235
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 153/208 (73%), Positives = 176/208 (84%), Gaps = 2/208 (0%)
Query: 31 KILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRML 90
+IL KP +N + KS +C+ASWQELAGVLVFSAIPFTAVKAIANS +G L+ R+
Sbjct: 23 RILVSKP--RNRIAVTKSRSICRASWQELAGVLVFSAIPFTAVKAIANSSIGVSLRRRLE 80
Query: 91 ETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
E KK A+++SS+FK+ A++ARN+S WYG+ERPRW GPIPYDYP YLTGELPGDYGFD+AG
Sbjct: 81 EKKKEAVENSSRFKSKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAG 140
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
L KD + F KYFNFEILHARWAML ALGAL+PEV D+ G FH EPVWWRVGYSKLQGET
Sbjct: 141 LGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGET 200
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLGIPGLH+AGSQGVIVIAICQ LLM
Sbjct: 201 LEYLGIPGLHVAGSQGVIVIAICQVLLM 228
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 150/194 (77%), Positives = 171/194 (88%)
Query: 45 KPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFK 104
K + S ASWQELAGVL+FSAIPFTAVKAIANSPLGE LQ +M E K A+++SS FK
Sbjct: 34 KRRRSSFITASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEERKTFAVENSSTFK 93
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
ALA +AR ES WYGE+RPRWLGPI Y+YPSYLTGELPGDYGFD+AGL +DP+A QKYFNF
Sbjct: 94 ALAGKARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNF 153
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
EILHARWAML ++GAL+PE+LD++GAFH VEPVWWRVGYSKL+G+TLDYLGI GLH AGS
Sbjct: 154 EILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGS 213
Query: 225 QGVIVIAICQALLM 238
QGV+VIAICQALLM
Sbjct: 214 QGVVVIAICQALLM 227
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 162/187 (86%), Positives = 178/187 (95%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
CKASWQELAGVL+FSAIPFTAVKAIANSPLGE LQ+RM E KKAA+++SSKFKALA +A+
Sbjct: 45 CKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAK 104
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
NESLWYGEERPRWLGPIPYDYP+YLTGELPGDYGFD+AGL KDP+AFQKYFNFEILHARW
Sbjct: 105 NESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARW 164
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALGAL+PE+LD++GAFH VEPVWWRVGYSKL+G+TLDYLGIPG H AGSQGVIVIA
Sbjct: 165 AMLAALGALLPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIA 224
Query: 232 ICQALLM 238
ICQALLM
Sbjct: 225 ICQALLM 231
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 161/205 (78%)
Query: 34 ALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETK 93
A PS L + +S +ASWQELAGVLVFSAIPFTAVKA+ANSPLG L+ R+ + K
Sbjct: 13 AAPPSALPLRRRRRSHTPVRASWQELAGVLVFSAIPFTAVKALANSPLGARLRRRLEDRK 72
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
AA ++ +A +R ARN S WYG +RPRWLGP+PYDYP YLTGE PGDYGFD+AGL +
Sbjct: 73 AAAAAEADALRAASRGARNNSFWYGGDRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGR 132
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP+AF YFNFEILH RWAML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+ LDY
Sbjct: 133 DPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDY 192
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LGIPG +AG QGV+VIAICQALLM
Sbjct: 193 LGIPGFRIAGGQGVVVIAICQALLM 217
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/231 (58%), Positives = 169/231 (73%), Gaps = 8/231 (3%)
Query: 8 AHATEDWLSWSCCSSSSGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSA 67
AH+T W S + G +++ R L + C+A+WQELAGV+VFSA
Sbjct: 26 AHSTRQWKS--KLGNPFKGAEVKQNCGSITRRNGQLPR------CRAAWQELAGVVVFSA 77
Query: 68 IPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
+PFT VKAIANS +GE LQ RML+TKKAA + + + + R+ES+WY E RP+WLGP
Sbjct: 78 LPFTLVKAIANSSIGEQLQQRMLKTKKAAQEAAGEAREAQSNVRDESMWYREGRPKWLGP 137
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
IPYDYP +L GE PGDYGFD+ GLS+DP AF++YFNFEILHARWAML ALG ++PE+LD
Sbjct: 138 IPYDYPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDR 197
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G EPVWW+VGY+KLQG+TLDYLGIPGLH+AG+QG++VIA CQ +LM
Sbjct: 198 FGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILM 248
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/187 (70%), Positives = 157/187 (83%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
+ASWQELAGVLVFSA+PFTAVKA+ANSPLG L+ R+ + K AA ++ ++ ARQAR
Sbjct: 37 VRASWQELAGVLVFSAVPFTAVKALANSPLGARLRRRLDDRKAAAAAEADALRSAARQAR 96
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
S WYG+ERPRWLGP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YFNFEILH RW
Sbjct: 97 TASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRW 156
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QGVIVIA
Sbjct: 157 AMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 216
Query: 232 ICQALLM 238
ICQALLM
Sbjct: 217 ICQALLM 223
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 128/187 (68%), Positives = 150/187 (80%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
C+ASWQELAGVLVFSA PFTAVKAIANS LG+ LQ RM ETK AA S A +AR
Sbjct: 35 CRASWQELAGVLVFSAFPFTAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRAR 94
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S+W+G++RP+WLGPIPYDYP +L G PGDYGFD+AGL KDP F K+FNFEILHARW
Sbjct: 95 DASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARW 154
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALG ++PEVL+ + E VWWRVGY+KL+G+TLDYLGIPGLH+ G+QG+IVIA
Sbjct: 155 AMLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIA 214
Query: 232 ICQALLM 238
ICQ LLM
Sbjct: 215 ICQFLLM 221
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 127/187 (67%), Positives = 149/187 (79%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
C+ASWQELAGVLVFSA PFTAVKAIANS LG+ LQ RM ETK AA S A +AR
Sbjct: 35 CRASWQELAGVLVFSAFPFTAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRAR 94
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S+W+G++RP+WLGPIPYDYP +L G PGDYGFD+AGL KDP F K+FNFEILHARW
Sbjct: 95 DASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARW 154
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALG ++PEVL+ E VWWRVGY+KL+G+TLDYLGIPGLH+ G+QG++VIA
Sbjct: 155 AMLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIA 214
Query: 232 ICQALLM 238
ICQ LLM
Sbjct: 215 ICQFLLM 221
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/187 (70%), Positives = 156/187 (83%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
+ASWQELAGVLVFSA+PFTAVKA+ANSPLG L+ R+ + K AA ++ ++ ARQAR
Sbjct: 37 VRASWQELAGVLVFSAVPFTAVKALANSPLGARLRRRLDDRKAAAAAEADALRSAARQAR 96
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
S WYG+ERPRWLGP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YFNFEILH RW
Sbjct: 97 TASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRW 156
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AML ALG +VPE+LD+ H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QGVIVIA
Sbjct: 157 AMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIA 216
Query: 232 ICQALLM 238
ICQALLM
Sbjct: 217 ICQALLM 223
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/192 (70%), Positives = 158/192 (82%)
Query: 47 KSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKAL 106
+ SL +ASWQELAGVLVFSAIPFTAVKA+ANSPLG L+ R+ + K AA ++ +A
Sbjct: 25 RRSLSVRASWQELAGVLVFSAIPFTAVKALANSPLGARLRRRLEDRKAAAAAEADALRAA 84
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
AR ARN S WYG +RPRWLGP+PYDYP +LTGE PGDYGFD+AGL +DP+AF YFNFEI
Sbjct: 85 ARGARNNSFWYGGDRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEI 144
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
LH RWAML ALG ++PE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QG
Sbjct: 145 LHCRWAMLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQG 204
Query: 227 VIVIAICQALLM 238
VIVIAICQALLM
Sbjct: 205 VIVIAICQALLM 216
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/186 (70%), Positives = 155/186 (83%)
Query: 53 KASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARN 112
+ASWQELAGVLVFSA+PFTAVKA+A SPLG LL+ R+ + K +A ++ +A ARQAR+
Sbjct: 35 RASWQELAGVLVFSAVPFTAVKALAGSPLGALLRRRLEDRKASAAAEADALRAAARQARS 94
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
S W+GE RPRWLGPIPYDYP +L GE PGDYGFD+AGL +DP+AF YFNFEILH RWA
Sbjct: 95 SSFWFGEARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 154
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
ML ALG ++PE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGI GL +AG QGVIVIAI
Sbjct: 155 MLAALGVVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAI 214
Query: 233 CQALLM 238
CQALLM
Sbjct: 215 CQALLM 220
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 154/192 (80%)
Query: 47 KSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKAL 106
+ S+ +ASWQELAGVLVFSA+PFTAVKAIANSPLG L+ R+ K +A ++ +A
Sbjct: 21 RKSMRVRASWQELAGVLVFSAVPFTAVKAIANSPLGASLRRRLESRKASAAAEADALRAA 80
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
AR+AR+ S WYG RPRWLGP+ YDYP +L GE PGDYGFD+AGL +DP+AF YFNFEI
Sbjct: 81 AREARSSSFWYGGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEI 140
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
LH RWAML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QG
Sbjct: 141 LHCRWAMLAALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQG 200
Query: 227 VIVIAICQALLM 238
+IVIAICQ LLM
Sbjct: 201 IIVIAICQVLLM 212
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 135 YLTGEL--PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG--- 189
YL G++ PG FD GLSKDP+AF+++ EI + R AM+ +G + + G
Sbjct: 232 YLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNGRLAMVAWIGFYIQAAVTGKGPVQ 291
Query: 190 --AFHLVEPV 197
A HL +P+
Sbjct: 292 NLAEHLSDPL 301
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/183 (56%), Positives = 132/183 (72%), Gaps = 4/183 (2%)
Query: 58 ELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQ--DSSKFKALARQARNESL 115
++ GVL FSA+PF AV+A+A+S LG+ LQ R LE K+ + + + K LA AR+ES
Sbjct: 10 DVLGVLAFSALPFAAVQALADSDLGKKLQ-RDLEANKSEYKRAEQQREKELA-AARDESP 67
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYGEERP+WLGP+ YDYP+YL G PGDY +D L++D F +YF FE+LHARWAMLG
Sbjct: 68 WYGEERPKWLGPLSYDYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLG 127
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALGA +PE+L G +E WW VG +KLQGE L+YLG+ GL +AG QG+ +IAICQ
Sbjct: 128 ALGAGIPEILQYSGVSDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQV 187
Query: 236 LLM 238
LLM
Sbjct: 188 LLM 190
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 99/113 (87%)
Query: 126 GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
GP+PY+YP++LTGE PGDYGFD+AGL +DP+AF YFNFEILH RWAML ALG +VPE+L
Sbjct: 35 GPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELL 94
Query: 186 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
D+ G H VEPVWW+VGY+KLQG+TLDYLGIPG +AG QGVIVIAICQALLM
Sbjct: 95 DLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLM 147
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 135/195 (69%), Gaps = 2/195 (1%)
Query: 45 KPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFK 104
+P +SL +A +++ G+++FSA+PF AV+A+A+S LG+ L + K + +++ +
Sbjct: 53 QPSASLSLEAV-KDVGGLVLFSALPFVAVQALADSKLGKDLLAGLEAQKPLLRRQAAQQE 111
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R AR +S W+G RP WLGP+ P +L+GELPGDYG+D AGL +DP +Y
Sbjct: 112 AERRAARQQSPWFGAARPLWLGPLSTQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVEL 171
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL-QGETLDYLGIPGLHLAG 223
E+LHARWAMLGALGA+VPE+L + G+ +E WW VGY+KL GE L YLG+PGL +AG
Sbjct: 172 ELLHARWAMLGALGAVVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAG 231
Query: 224 SQGVIVIAICQALLM 238
QGV +IA CQ LLM
Sbjct: 232 GQGVAIIAFCQVLLM 246
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 107/152 (70%), Gaps = 3/152 (1%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
LQ ML + +++ KAL WYGE+ P WLG I Y YPSYLTGE+PGDY
Sbjct: 43 LQTLMLYYRAKNIRED---KALEEIGNTHFFWYGEDGPPWLGSISYKYPSYLTGEMPGDY 99
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
FD+ GL +DP+ KYFNFEILHARW L + A++P++L+++GA H VEPVWWR GYS
Sbjct: 100 DFDIVGLGQDPVELXKYFNFEILHARWVTLAFVSAVIPKILNLLGAVHFVEPVWWRAGYS 159
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
KL+ TLDYL I GLHLAGSQG +VIAICQ L
Sbjct: 160 KLKVNTLDYLRIQGLHLAGSQGAVVIAICQIL 191
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
DYP +L GE PGDYGFD+AGL +DP+AF YFNFEILH RWAMLGALG +VPE+LD+ G
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
H VEPVWW+VGY+KLQG+TLDYLGIPGL +AG QG+IVIAICQALLM
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLM 108
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 135 YLTGEL--PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
YL G+L PG FD GLSKDP+AF++ EI + R AM+ LG V
Sbjct: 128 YLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYV 176
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 123/187 (65%), Gaps = 6/187 (3%)
Query: 54 ASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQ-DSSKFKALARQARN 112
++ ++ A + +F+A+P TA+ A++ S +G+ +Q + LE K LQ ++ K +A +AR
Sbjct: 115 STGEDGAAIFIFAALPITALTALSKSSVGKQVQEQ-LEAKLPELQAEADKTRAAHAEARR 173
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S WYG RPR GP+ +L G + GD GFD GLSK+ +F KY E+LHARWA
Sbjct: 174 QSKWYGPSRPRLPGPL--GSAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWA 231
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIA 231
MLG +G LVPE+L + G L EPVWW+VG SKL + TL++ GI G +AG QG+ +IA
Sbjct: 232 MLGVVGCLVPELLALRG-VDLGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIA 290
Query: 232 ICQALLM 238
CQA+LM
Sbjct: 291 ACQAVLM 297
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERP 122
LV +A P + ++ S G L+ +LE + A S+ + L +A S YGE RP
Sbjct: 120 LVLAAFPIVGLTLLSKSDFGRRLEENILERRPALEAKRSEVERLREEAMEASPLYGEARP 179
Query: 123 RWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVP 182
L P P +LTG L GD GFD L K P + + E+LHARWAML +G VP
Sbjct: 180 --LLPGISSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVP 237
Query: 183 EVLDMVGAF----HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E L + GA L EPVWW+VG +KL GE+L+Y G+ G +AG QGV VIA CQA+LM
Sbjct: 238 EALSIAGALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLM 297
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 90 LETKKAALQDSSKFKALAR-QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
++ ++ AL K + R +AR S +YG R ++LG + Y+YP++L G L GD GFD
Sbjct: 4 IDRERPALDAEKARKEMERAEARGRSAFYGANRVKFLGDLEYEYPAHLDGTLCGDVGFDP 63
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
L+ ++Y E+LH RWAMLG +GA VPE LD G +L EPVWW+VG +K+
Sbjct: 64 LNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVANLGEPVWWKVGAAKMNS 123
Query: 209 E-TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ LDYLG G H+AG G+ VIA CQ +LM
Sbjct: 124 DIALDYLGFSGFHIAGGSGIAVIAACQLVLM 154
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 6/179 (3%)
Query: 62 VLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQ-DSSKFKALARQARNESLWYGEE 120
+ VF+A+P TA+ A++ S +G+ +Q + LE + L+ ++ + + +QAR S WYG
Sbjct: 1 IFVFAALPITALTALSKSSVGKQVQQQ-LEARLPELRAEAERQRQAHQQARQRSKWYGAS 59
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
RPR GP+ +L GE GD GFD L KDP AF ++ E+LHARWAMLG +G +
Sbjct: 60 RPRLPGPL--GGAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCM 117
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
VPE+L + G L EPVWW+VG SKL + TL++ GI G +AG QG+ +IA CQA+LM
Sbjct: 118 VPELLALRGV-ELGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLM 175
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP D PSYLTGE PGDYG+D AGLS DP F++Y E++HARWA
Sbjct: 34 DSVWYGPDRPQFLGPFSGDTPSYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWA 93
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G Q LDYLG +L +Q ++ I
Sbjct: 94 MLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLG--NANLVHAQSILAILG 151
Query: 233 CQALLM 238
CQ +LM
Sbjct: 152 CQVVLM 157
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
+ ++ + TKK +S + + + +S+WYG ERP++LGP D PSYLTGE PGD
Sbjct: 9 FIGSQAVTTKKV----TSMRRTQKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTGEFPGD 64
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 65 YGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGS 124
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
Q LDYLG L +Q ++ I CQ LLM
Sbjct: 125 QIFQEGGLDYLG--NSSLVHAQYILAILGCQVLLM 157
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 84 LLQNRMLETK-KAALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYDYPSYLTGELP 141
L+ NR L K +AA + + + A A++ + WYG +R +WLGP + P+YLTGE P
Sbjct: 5 LISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFP 64
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F+KY E++HARWA+LGALG L PE+L EPVW++
Sbjct: 65 GDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKA 124
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G LDYLG P L A Q ++ Q +LM
Sbjct: 125 GAQIFSEGGLDYLGSPALIHA--QNIVATLAVQVVLM 159
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 3/177 (1%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERP 122
+ SA P + I+ + GE L + + + A + + ++ + +AR S YG R
Sbjct: 104 FLLSAAPVVLLTVISKTSFGESLMKNIDDQRPALVAEKARRENERARARERSSLYGARRV 163
Query: 123 RWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVP 182
++LG Y+YP++L G L GD GFD GL KD + + E+LHARWAMLG +G VP
Sbjct: 164 KFLGDAEYEYPAHLDGSLCGDAGFDPLGLGKDDLPRMR--ELELLHARWAMLGIVGVAVP 221
Query: 183 EVLDMVGAFHLVEPVWWRVGYSKLQGE-TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E+L+ G L EPVWW+VG +K+ + +LDY G+ G H+AG G+ +IA CQ +LM
Sbjct: 222 ELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQVVLM 278
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 15/168 (8%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
+A + + P+ + + M T+K + + +S+WYG +RP++LGP
Sbjct: 5 SANTFVGSKPVNKKMVTSMRRTQK-------------KSSAPDSVWYGPDRPQFLGPFSG 51
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D PSYLTGE PGDYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G
Sbjct: 52 DCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGG 111
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G Q LDYLG +L +Q ++ I CQ +LM
Sbjct: 112 VSFGESVWFKAGSQIFQEGGLDYLG--NANLVHAQSILAILGCQVVLM 157
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 95/162 (58%), Gaps = 10/162 (6%)
Query: 77 ANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYL 136
A + +G + N+ + T Q S + +++WYG +RP++LGP D PSYL
Sbjct: 6 AKTFIGSQVANKKMVTSMRRTQKKS--------SAPDNVWYGPDRPQFLGPFSGDCPSYL 57
Query: 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
TGE PGDYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E
Sbjct: 58 TGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGES 117
Query: 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
VW++ G Q LDYLG +L +Q ++ I CQ LLM
Sbjct: 118 VWFKAGSQIFQEGGLDYLG--NSNLVHAQSILAILGCQVLLM 157
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S+WYGE+RP+WLGP + PSYL+GE PGDYG+D AGLS DP F KY E++HARWAM
Sbjct: 17 SMWYGEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAM 76
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG L PE+L G E VWW+ G LDYLG P L A Q +I I
Sbjct: 77 LGALGCLTPELLAKNGV-SFGEAVWWKAGAQIFAPGGLDYLGNPSLVHA--QSIIAILAS 133
Query: 234 QALLM 238
Q LLM
Sbjct: 134 QVLLM 138
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Query: 101 SKFKALARQARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
++ K++ +RN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+
Sbjct: 13 AQTKSIRNVSRNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFK 72
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
Y E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG
Sbjct: 73 AYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLG--NS 130
Query: 220 HLAGSQGVIVIAICQALLM 238
+L +Q ++ I CQ +LM
Sbjct: 131 NLIHAQSILAILGCQVVLM 149
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 110 ARNESLWYGEERPRWLGPI-PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
ARN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 21 ARNAVEWYGPDRAKWLGPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 80
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG + PE+L L E VW++ G Q LDYLG P L +Q ++
Sbjct: 81 ARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNP--SLVHAQSIL 138
Query: 229 VIAICQALLM 238
I CQ +LM
Sbjct: 139 AILGCQVVLM 148
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+RN WYG +RP+WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 6 SRNAIEWYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 65
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 66 ARWAMLGALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 123
Query: 229 VIAICQALLM 238
I CQ +LM
Sbjct: 124 AILGCQVVLM 133
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
ARN WYG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 21 ARNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIH 80
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 81 ARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 138
Query: 229 VIAICQALLM 238
I CQ +LM
Sbjct: 139 AILGCQVVLM 148
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S +YG ER WLGP+ PSYLTGE PGDYG+D AGLS DP F++Y E++HARWAM
Sbjct: 51 SQFYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAM 110
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G + EPVW++ G Q LDYLG PGL A Q ++ C
Sbjct: 111 LGALGCVTPELLAKNGT-PIAEPVWFKAGAQIFQEGGLDYLGNPGLVHA--QSILATLAC 167
Query: 234 QALLM 238
Q +LM
Sbjct: 168 QVILM 172
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 90/148 (60%), Gaps = 7/148 (4%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAG 150
T K AL +K ++ QA E WYG +R +WLGP PSYLTGE PGDYG+D AG
Sbjct: 13 TAKTALVKGNK--RVSVQAAVE--WYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAG 68
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F+KY E++HARWAMLGALG + PE+L G E VW+R G +
Sbjct: 69 LSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGG 128
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A S G IVI+ Q +LM
Sbjct: 129 LDYLGSPALIHAQSIGAIVIS--QVILM 154
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 90/148 (60%), Gaps = 7/148 (4%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAG 150
T K+ L +K ++ QA E WYG +R +WLGP PSYLTGE PGDYG+D AG
Sbjct: 10 TTKSTLPKGNK--RVSVQAAVE--WYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAG 65
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F+KY E++HARWAMLGALG + PE+L G E VW+R G +
Sbjct: 66 LSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGG 125
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A S G IVI+ Q +LM
Sbjct: 126 LDYLGSPALIHAQSIGAIVIS--QVILM 151
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ +++ A ++S+WYG +RP++LGP + PSYLTGE GDYG+D AGLS DP F +
Sbjct: 39 RTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 157 -QSILAIWACQVVLM 170
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLM 238
CQ +LM
Sbjct: 163 CQVVLM 168
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 81 LGELLQNRMLETKKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTG 138
+G+ L + E + + +F ++ R ++ +S+WYG +RP++LGP PSYLTG
Sbjct: 12 VGQTLLKQQNELVRKVGGNGGRF-SMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTG 70
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
E PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW
Sbjct: 71 EFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVW 129
Query: 199 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
++ G Q LDYLG P +L +Q ++ I CQ +LM
Sbjct: 130 FKAGSQIFQEGGLDYLGNP--NLIHAQSILAIWACQVVLM 167
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLM 238
CQ +LM
Sbjct: 163 CQVVLM 168
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N PL L + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPLSALFGEARVTMRKTA--------AKAKQVSSSSPWYGADRVLYLGPLSRE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTG+ PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGDFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 86/133 (64%), Gaps = 3/133 (2%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A+ ++++S+WYG +RP++LGP P+YLTGE PGDYG+D +GLS DP F+++ E
Sbjct: 27 AKPSKSDSVWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVE 86
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++HARWAMLGALG + PEVL+ E VW++ G L+YLG PGL A Q
Sbjct: 87 VIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHA--Q 144
Query: 226 GVIVIAICQALLM 238
++ + Q LLM
Sbjct: 145 SIVATLVVQVLLM 157
>gi|294461908|gb|ADE76510.1| unknown [Picea sitchensis]
Length = 146
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 86/158 (54%), Gaps = 49/158 (31%)
Query: 52 CKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQAR 111
CKASWQELAGVL+FSAIPFTAVKAIANSPL LQ RM TK A++++ + +A ++AR
Sbjct: 37 CKASWQELAGVLIFSAIPFTAVKAIANSPLAARLQERMQGTKSLAMKEAPEREAATQRAR 96
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
ES +E+LHARW
Sbjct: 97 KES-------------------------------------------------YEVLHARW 107
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
AML ALG ++PE+LD G +EPVWWRVGY+KL+
Sbjct: 108 AMLAALGVVIPELLDRFGVVDFIEPVWWRVGYAKLKAR 145
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 111 RNESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
RN WYG +R +WLGP D PSYLTG+ PGDYG+D AGLS DP F+ Y E++HA
Sbjct: 22 RNAVEWYGPDRAKWLGPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHA 81
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 82 RWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSILA 139
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 140 ILGCQVVLM 148
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N PL L + +K A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPLSTLFGEARVTMRKTT--------AKAKQVSSSSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG++ PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G Q LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPELLAKNGV-KFGEAVWFKAGSQIFQEGGLDYLGNP--NLVHAQSILAIWA 161
Query: 233 CQALLM 238
CQ +LM
Sbjct: 162 CQVVLM 167
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 1 QQNELVKKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 59
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 60 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQI 118
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I CQ +LM
Sbjct: 119 FSEGGLDYLGNP--NLIHAQSILAIWACQVVLM 149
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 87/155 (56%), Gaps = 4/155 (2%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGD 143
+ L+ A K +A+ A + WYG R +WLGP + P+YLTGE PGD
Sbjct: 7 FSRKALQVSAKATGKKGTSKTVAKPAPSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGD 66
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 67 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGV-QFGEAVWFKAGA 125
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
Q LDYLG P L A Q ++ CQ +LM
Sbjct: 126 QIFQEGGLDYLGNPSLVHA--QNIVATLACQVILM 158
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N PL L + +K A A A+Q + + WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPLSALFGEARVTMRKTA--------AKAKQLSSSNPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L K Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 21 QQNELVKKVGTAQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG L PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPELLAKNGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I CQ +LM
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWACQVVLM 169
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +++ + ++S+WYG +RP+WLGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 38 KTVSKSSGSDSIWYGADRPKWLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 97
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 98 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 155
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 156 -QSILAIWASQVILM 169
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +++ + ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 40 KTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 99
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 100 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 157
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 158 -QSILAIWACQVILM 171
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ +++ A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 157 -QSILAIWACQVVLM 170
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
CQ +LM
Sbjct: 161 CQVVLM 166
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 96/174 (55%), Gaps = 11/174 (6%)
Query: 66 SAIPFTAVKA-IANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRW 124
S I F+A+ A P EL+ +K F ++ +S+WYG +RP++
Sbjct: 4 SGIQFSAIAGQTALKPQNELV-------RKVGGNGGRFFMRRTVKSAPQSIWYGPDRPKY 56
Query: 125 LGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+
Sbjct: 57 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 116
Query: 185 LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L G E VW++ G LDYLG P +L +Q ++ I CQ +LM
Sbjct: 117 LSKNGV-QFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWACQVVLM 167
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVVLM 168
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSY TGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLM 238
CQ +LM
Sbjct: 163 CQVVLM 168
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 8/159 (5%)
Query: 80 PLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGE 139
P EL+ R + T +A + + K +++ + ++S+WYG +RP++LGP + PSYL GE
Sbjct: 20 PANELV--RKVGTSQARV---TMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGE 74
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
GDYG+D AGLS DP F + E++HARWAMLGALG L PE+L G E VW+
Sbjct: 75 FAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWF 133
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 134 KAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILM 170
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N L L + +K A A+Q + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNVSLSALFGEARVTMRKT--------TAKAKQVASSSPWYGADRVLYLGPL 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQA+LM
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQAVLM 169
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 92 TKKAALQDSSKFKALARQ--------ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
+ +AA+ S K AR+ + +S WYG ERP +LG + PSYLTGE PGD
Sbjct: 9 SARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGD 68
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 69 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAGA 127
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
Q LDYLG P +L +Q ++ I Q LLM
Sbjct: 128 QIFQEGGLDYLGNP--NLVHAQSILAILGTQVLLM 160
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 233 CQALLM 238
CQ +LM
Sbjct: 164 CQVVLM 169
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGSP--NLIHAQSILAIWA 163
Query: 233 CQALLM 238
CQ +LM
Sbjct: 164 CQVVLM 169
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 94 KAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
+AA D+ + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGL
Sbjct: 20 RAAGVDAGDRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 79
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETL 211
S DP F + E++H+RWAMLGALG + PE+L G E VW++ G L
Sbjct: 80 SADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGL 138
Query: 212 DYLGIPGLHLAGSQGVIVIAICQALLM 238
DYLG P +L +Q ++ I CQ +LM
Sbjct: 139 DYLGNP--NLVHAQSILAIWACQVVLM 163
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ + + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVNKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 157 -QSILAIWACQVVLM 170
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G + LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFREGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVVLM 168
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 233 CQALLM 238
CQ +LM
Sbjct: 162 CQVVLM 167
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLM 238
CQ +LM
Sbjct: 163 CQVVLM 168
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 122/229 (53%), Gaps = 30/229 (13%)
Query: 33 LALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKA-IANSP-LGELLQNRML 90
L + S NL +S +V KA A + +P +A+KA +AN+ L N M
Sbjct: 20 LCYRSSGSNL----QSGIVAKAPTGIQARGTAAANMPRSALKAGLANAARLSPKQFNAMK 75
Query: 91 ETKKAALQDSSK----FKALARQA--------RNESL-------WYGEERPRWLGPIPY- 130
K A Q ++ F+ LA++A N++L WYG +RP+WL P +
Sbjct: 76 NAGKIATQMGARTVADFRDLAQEAVCHMGQTSGNKALMGACNVEWYGPDRPKWL-PDAFL 134
Query: 131 -DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
P YLTGE PGDYG+D GLS DP F Y E+LHARWAMLGALG + PEV++
Sbjct: 135 AGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAMLGALGCVFPEVINSYY 194
Query: 190 AFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
++ EPVWW+ G L G+++DYLG A S +I IA Q +LM
Sbjct: 195 NGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASS--IIAIAGAQVVLM 241
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 96/168 (57%), Gaps = 3/168 (1%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
+A++ A + L Q+ L K AL + ++ +S+WYG +RP++LGP
Sbjct: 4 SAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQSIWYGPDRPKYLGPFSE 63
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV 123
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P +L +Q ++ I CQ +LM
Sbjct: 124 -KFGESVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLM 168
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 233 CQALLM 238
CQ +LM
Sbjct: 164 CQVVLM 169
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 92 TKKAALQDSSKFKALARQ--------ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
+ +AA+ S K AR+ + +S WYG ERP +LG + PSYLTGE PGD
Sbjct: 9 SARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGD 68
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 69 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAGA 127
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
Q LDYLG P +L +Q ++ I Q LLM
Sbjct: 128 QIFQEGGLDYLGNP--NLVHAQSILAILGTQVLLM 160
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSQGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVVLM 168
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 89/149 (59%), Gaps = 5/149 (3%)
Query: 92 TKKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
+AA D+ + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 18 VSRAAGVDAGGRITMRRTVKSVPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA 77
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 78 GLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEG 136
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I CQ +LM
Sbjct: 137 GLDYLGNP--NLVHAQSILAIWACQVVLM 163
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L +K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 21 QQNELVSKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWAFQVVLM 169
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P LL + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPSLALLGEARVTMRKTA--------AKAKQVSSGSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVVLM 168
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVVLM 168
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L+D + A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 32 LRDVAAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
AF + E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG
Sbjct: 92 AFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGN 151
Query: 217 PGLHLAGSQGVIVIAICQALLM 238
P +L +Q ++ + Q +LM
Sbjct: 152 P--NLVHAQSILAVLGFQVILM 171
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
L+ R +K + D +A +S+WYG +RP++LGP PSYLTGE PGDY
Sbjct: 17 LRQRDELVRKVGVSDGRVSMRRTVKAAPQSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDY 76
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
G+D AGLS DP F K E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 77 GWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNGV-KFGEAVWFKAGSQ 135
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 136 IFSEGGLDYLGNP--NLIHAQSILAIWATQVVLM 167
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVVLM 168
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ +++ AR++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS D F +
Sbjct: 39 RTVSKSARSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 157 -QSILAIWACQVVLM 170
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ +++ A ++++WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 40 RTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 99
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A
Sbjct: 100 LEVIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 157
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 158 -QSILAIWACQVVLM 171
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L + AA++ S + A + R WYG RP++LGP PSYL GE PGDYG+D A
Sbjct: 5 LTQRLAAVKPSGR--ATRQVTRASVEWYGPNRPQFLGPFSGSTPSYLKGEYPGDYGWDTA 62
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GLS DP F +Y E++HARWAMLGALG + PE+L G E VW++ G Q
Sbjct: 63 GLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEG 122
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ + + Q LM
Sbjct: 123 GLDYLGNPSLIHA--QSIVAVLLTQLTLM 149
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 87/149 (58%), Gaps = 3/149 (2%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L K L ++ R + +S+WYG +RP++LGP PSYLTGE PGDYG+D A
Sbjct: 25 LSRKVGNLGEARTVMRRTRASTPDSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTA 84
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G +
Sbjct: 85 GLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG-IKFGEAVWFKAGSQIFKEG 143
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 144 GLDYLGNP--NLVHAQSILAIWASQVILM 170
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 45 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G Q LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFQEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 233 CQALLM 238
Q +LM
Sbjct: 162 SQVVLM 167
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L+D + A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 35 LRDVAAAAAGGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPE 94
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
AF + E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG
Sbjct: 95 AFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGN 154
Query: 217 PGLHLAGSQGVIVIAICQALLM 238
P +L +Q ++ + Q +LM
Sbjct: 155 P--NLVHAQSILAVLGFQVILM 174
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 45 KSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 104
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 105 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 161
Query: 233 CQALLM 238
CQ +LM
Sbjct: 162 CQVVLM 167
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 90/153 (58%), Gaps = 5/153 (3%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLM 169
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEVVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVVLM 168
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 21 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 80
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 81 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 138
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 139 -QSILAIWACQVVLM 152
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
L+ R +K + D +A +S+WYG +RP++LGP PSYLTGE PGDY
Sbjct: 17 LKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDY 76
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
G+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 77 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV-QFGEAVWFKAGAQ 135
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 136 IFSEGGLDYLGNP--NLVHAQSILAIWATQVVLM 167
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+ + + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F +
Sbjct: 39 RTVNKSAGSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRE 98
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 99 LEVIHARWAMLGALGCVTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 156
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 157 -QSILAIWACQVILM 170
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 91/167 (54%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P L + +K A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNVPSSALFGEARVTMRKTT--------AKAKQVSSGSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFNEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
CQ +LM
Sbjct: 163 CQVVLM 168
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 43 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 103 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 159
Query: 233 CQALLM 238
CQ +LM
Sbjct: 160 CQVVLM 165
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
A+ WYG R +WLGP PSYLTGE PGDYG+D AGLS DP F+KY E++H
Sbjct: 25 AKAADEWYGPNRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIH 84
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
AR+AMLGALG + PE+L G E VW+R G Q LDYLG P L A S G I
Sbjct: 85 ARFAMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAI 144
Query: 229 VIAICQALLM 238
VI+ Q +LM
Sbjct: 145 VIS--QVVLM 152
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 110/222 (49%), Gaps = 14/222 (6%)
Query: 20 CSSSSGGCSLRKILALK--PSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIA 77
C SS+G LR +A PS + + S L K E+ G + + P A+
Sbjct: 23 CVSSTG---LRSGVAATRGPSMVKVAARGVSQLANKRISGEM-GRNILAESPKAAMLVKT 78
Query: 78 NSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYL 136
+ +L+++ + + A K A Q WYG +R WLGP PSYL
Sbjct: 79 GAITNKLMKSGLSMNQIATAVTCQKIGGAACQE-----WYGPDRALWLGPFSEGAVPSYL 133
Query: 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
TGE PGDYG+D GLS DP F Y E++HARWAMLGALG + PE+L + EP
Sbjct: 134 TGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSGVPIAEP 193
Query: 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 194 VWFKAGSQIFAEGGLDYLGNPSLIHA--QSILAILACQVVLM 233
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 92/170 (54%), Gaps = 11/170 (6%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + +K A A +Q + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNLPSSSLFGEARVTMRKTA--------AKVKQVASGSPWYGSDRVLYLGPL 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P L+ + + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNLPSSALIGDARVNMRKTA--------AKAKQVSSSSPWYGSDRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E W++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAGWFKAGSQIFSDGGLDYLGNPSLVHA--QSLLAIWACQVVLM 169
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 25/199 (12%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKA-------ALQDSSKFKALARQARNESL 115
L+FSA+P + ++ S LG+ L+ + + K+A + + +ALA+ +
Sbjct: 134 LLFSALPVVLLTCVSKSDLGDGLREQARKAKEADEGGTEGGREGRERMRALAKA--KFPM 191
Query: 116 WYGEERPRWL----------------GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
++G+ER RW+ + +PSYL G L GD FD LS +
Sbjct: 192 YFGKERGRWMPRKSVSFFSGGDSDDDASSSFMFPSYLDGTLAGDAQFDPLRLSDTEEKRR 251
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
+ E+LH RWAML +G VPE+L GA L EP+WW++G L+G ++YLGI G
Sbjct: 252 RNVELELLHGRWAMLAVVGVCVPEILSRSGALELSEPIWWKIGEKVLEGIDVNYLGIEGF 311
Query: 220 HLAGSQGVIVIAICQALLM 238
H+AG+ G+I IA CQA+LM
Sbjct: 312 HIAGASGIIGIAFCQAVLM 330
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCDFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVVLM 168
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I C
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 163
Query: 234 QALLM 238
Q +LM
Sbjct: 164 QVVLM 168
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 92/170 (54%), Gaps = 11/170 (6%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N L L + +K A A+Q + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNVSLSALFGEARVTMRKTT--------AKAKQVASSSPWYGADRVLYLGPL 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLM 169
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
+ + A ++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E
Sbjct: 37 MRKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELE 96
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++HARWAMLGALG L PE+L G E VW++ G LDYLG P L A Q
Sbjct: 97 VIHARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--Q 153
Query: 226 GVIVIAICQALLM 238
++ I CQ +LM
Sbjct: 154 SILAIWACQVILM 166
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 94/168 (55%), Gaps = 12/168 (7%)
Query: 72 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
A KA+ SP E+ N + +K A + A+ + SLWYG +R ++LGP
Sbjct: 13 AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSGSLWYGPDRVKYLGPFSG 64
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 -KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILM 169
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 128 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 187
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 188 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 245
Query: 235 ALLM 238
+LM
Sbjct: 246 VILM 249
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 115 WYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 174
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 175 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 232
Query: 235 ALLM 238
+LM
Sbjct: 233 VILM 236
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 84/142 (59%), Gaps = 2/142 (1%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L+D + + R + + LWYG +R ++LGP PSYL+GE PGDYG+D AGLS DP
Sbjct: 30 LRDVAAAASNGRISMSNELWYGPDRVKYLGPFSAQTPSYLSGEFPGDYGWDTAGLSADPE 89
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
AF + E++H RWAMLGALG + PEVL EPVW++ G LDYLG
Sbjct: 90 AFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYLGN 149
Query: 217 PGLHLAGSQGVIVIAICQALLM 238
P +L +Q ++ + Q LLM
Sbjct: 150 P--NLVHAQSILAVLGSQVLLM 169
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K A+ + +S WYG +RP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 29 KPAAKSSTPDSFWYGPDRPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 88
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG P L
Sbjct: 89 LELIHARWAMLGALGCIFPELLGSYGV-PFGESVWFKAGAQIFQEGGLDYLGNP--SLVH 145
Query: 224 SQGVIVIAICQALLM 238
+Q ++ I Q +LM
Sbjct: 146 AQSILAILGTQVILM 160
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G Q LDYLG P L A Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHA--QNIVATLACQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 90/153 (58%), Gaps = 5/153 (3%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRIAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLM 169
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 94/167 (56%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P + + +K A++ A+Q + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNLPSPAHIGEARVTMRKTAVK--------AKQVSSGSPWYGSDRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P +L +Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWACQVVLM 169
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G Q LDYLG P L +Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNP--SLVHAQNIVATLACQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 83/123 (67%), Gaps = 6/123 (4%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYGE RP++LGP P+YLTGE PGDYG+D AGLS DP+ F+ Y E++HARWAMLG
Sbjct: 89 WYGENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLG 148
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L+ G F+L PVW++ G + + +DYLG P +L +Q + + Q
Sbjct: 149 ALGCIFPELLNSAG-FNL--PVWFKAGGTIFE-NGIDYLGNP--NLVHAQSALAVLSVQV 202
Query: 236 LLM 238
+LM
Sbjct: 203 VLM 205
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 AQVVLM 168
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
L Q L K + S ++ +S+WYG +RP++LGP PSYLTGE PGD
Sbjct: 17 LKQQNELVRKVGSFGSSRTTMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGD 76
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 77 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKAGS 135
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 136 QIFSEGGLDYLGNP--NLVHAQSILAIWASQVVLM 168
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 94/168 (55%), Gaps = 12/168 (7%)
Query: 72 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
A KA+ SP E+ N + +K A + A+ A + S WYG +R ++LGP
Sbjct: 14 AGKAVKLSPSSSEITGNGRVTMRKTATK--------AKPASSGSPWYGPDRVKYLGPFSG 65
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 126 -KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 94/168 (55%), Gaps = 12/168 (7%)
Query: 72 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
A KA+ SP E+ N + +K A + A+ A + S WYG +R ++LGP
Sbjct: 14 AGKAVKLSPSSSEITGNGRVTMRKTATK--------AKPASSGSPWYGPDRVKYLGPFSG 65
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 126 -KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 89/156 (57%), Gaps = 6/156 (3%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 16 QAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 75
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAG 134
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 135 SQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 168
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G Q LDYLG P L +Q ++ CQ
Sbjct: 97 GALGCLTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNP--SLVHAQNIVATLACQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 91/167 (54%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A K + N P L + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 ARKMVENIPSSALFGEARVTMRKTA--------AKAKQVSSGSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 89/156 (57%), Gaps = 6/156 (3%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 16 QAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 75
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAG 134
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 135 SQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 168
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 91/167 (54%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ + P L + +K A A A+ + S WYG +R +LGP+ D
Sbjct: 14 AGKAVKDLPSSALFGEARVTMRKTA--------AKAKPVSSSSPWYGSDRVLYLGPLSGD 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 128 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 187
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
G LG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 188 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 245
Query: 235 ALLM 238
+LM
Sbjct: 246 VILM 249
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 93 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATQVVLM 168
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + +S WYG ERP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 28 KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 87
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 88 LELIHARWAMLGALGCITPELLAKSGT-QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA- 145
Query: 224 SQGVIVIAICQALLM 238
Q ++ Q +LM
Sbjct: 146 -QNIVATLAVQVILM 159
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 93 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATQVVLM 168
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEVLSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ +
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAVWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
AR + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 38 ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEV 97
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 98 IHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNP--NLVHAQS 155
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 156 ILAVLGFQVVLM 167
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 96/169 (56%), Gaps = 4/169 (2%)
Query: 71 TAVKAIANSPLGELLQN-RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIP 129
T+ A+ ++ G+ L+ L K A + + A +A + S+WYG +RP +LGP
Sbjct: 3 TSTAALTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFS 62
Query: 130 YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
PSYL+GE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 63 GSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNG 122
Query: 190 AFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 V-KFGEAVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAIWACQVILM 168
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 89/156 (57%), Gaps = 6/156 (3%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 16 QAVKLSPTAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 75
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAG 134
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 135 SQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 168
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +R WLGP PSYLTGE PGDYG+D GLS DP F Y E++HARWAML
Sbjct: 127 WYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 186
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
G LG + PE+L + EPVW++ G LDYLG P L A Q ++ I CQ
Sbjct: 187 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHA--QSILAILACQ 244
Query: 235 ALLM 238
+LM
Sbjct: 245 VILM 248
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q LM
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVGLM 169
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 12/159 (7%)
Query: 80 PLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGE 139
P+ EL +R + T +A + ++ + + ++S+WYG +RP++LGP + PSYL GE
Sbjct: 20 PVNEL--SRKVGTSEARV-------SMRKSSGSDSIWYGADRPKFLGPFSGETPSYLNGE 70
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
GDYG+D AGLS DP F + E++HARWAMLGALG + PE+L G E VW+
Sbjct: 71 FAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV-KFGEAVWF 129
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 130 KAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILM 166
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 89/156 (57%), Gaps = 6/156 (3%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 6 QAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 65
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 66 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAG 124
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 SQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 158
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P L+ + + +K A A A+Q + S WYG +R +LG + +
Sbjct: 9 AGKAVKNLPSSALIGDARVNMRKTA--------AKAKQVSSSSPWYGSDRVLYLGSLSGE 60
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 119
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW+ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 KFGEAVWFMAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 164
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP EL+ N + +K A A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPSAPELMGNGRVSMRKTA----------AKSVSSGSPWYGPDRVKYLGP 60
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 121 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLM 168
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 39 ASGRITMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 98
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 99 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 156
Query: 225 QGVIVIAICQALLM 238
Q ++ + Q +LM
Sbjct: 157 QSILAVLGFQVILM 170
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E+
Sbjct: 43 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEV 102
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 103 IHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQS 160
Query: 227 VIVIAICQALLM 238
++ + Q LLM
Sbjct: 161 ILAVLGFQVLLM 172
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 32 FYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 91
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE++ + EPVW++ G LDYLG P L A Q +I Q
Sbjct: 92 ALGCITPELI----GGDIAEPVWFKAGAQIFSEGGLDYLGNPSLVHA--QSIIATLAVQV 145
Query: 236 LLM 238
+LM
Sbjct: 146 ILM 148
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 112 NESL--WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
NE L +YG +R WLGP+ P+YLTGE PGDYG+D AGLS DP F++Y E++HA
Sbjct: 46 NEKLSAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHA 105
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G +VEPVW++ G LDYLG PGL A Q ++
Sbjct: 106 RWAMLGALGCITPELLAKNGT-PIVEPVWFKAGAQIFAEGGLDYLGNPGLVHA--QSILA 162
Query: 230 IAICQALLM 238
Q +LM
Sbjct: 163 TLAVQVILM 171
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP E++ N + +K ++ A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPSSYEIIGNGKVTMRKTVIK--------AKPVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGNSPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
N ++ A + + + + A +S+WYG +RP++LGP PSYLTGE PGDYG+
Sbjct: 21 NELVRKTGGAGKGRTNMRRTVKSAP-QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGW 79
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D AGLS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 80 DTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGSQIF 138
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 SEGGLDYLGNP--NLIHAQSILAIWAVQVVLM 168
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 VQVVLM 168
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 86 QNRMLETKKAALQDSSKFKAL--ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
Q L +K A A+ +R LWYG +R ++LGP PSYLTGE PGD
Sbjct: 16 QTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 75
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ EPVW++ G
Sbjct: 76 YGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGS 135
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ + Q +LM
Sbjct: 136 QIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLM 168
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 86/155 (55%), Gaps = 4/155 (2%)
Query: 86 QNRMLETKKAALQDSSKFKAL--ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
Q L +K A A+ +R LWYG +R ++LGP PSYLTGE PGD
Sbjct: 14 QTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGD 73
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ EPVW++ G
Sbjct: 74 YGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGS 133
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ + Q +LM
Sbjct: 134 QIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLM 166
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVILM 168
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPSSSEITGNGKVTMRKTASK--------AKTVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ N P L + +K A A A+ + S WYG +R +LGP+ +
Sbjct: 14 AGKAVKNLPSSALFGEARVTMRKTA--------AKAKPVSSGSPWYGSDRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
+ + + ++S+WYG +RP++LGP+ + PSYLTGE GDYG+D AGLS DP F + E
Sbjct: 37 MRKASSSDSIWYGADRPKYLGPLSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELE 96
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++HARWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 97 VIHARWAMLGALGCVTPELLAKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--Q 153
Query: 226 GVIVIAICQALLM 238
++ I Q +LM
Sbjct: 154 SILAIWASQVILM 166
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILERNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 TQVVLM 168
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 83/135 (61%), Gaps = 2/135 (1%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
+A + R + +YG +R ++LGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 16 RATRQVTRASAEFYGPDRVKFLGPFSGATPSYLKGEYPGDYGWDTAGLSADPETFSRYRE 75
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L GA + E VW++ G Q LDYLG +L
Sbjct: 76 LEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLG--NANLVH 133
Query: 224 SQGVIVIAICQALLM 238
+Q ++ + + Q +LM
Sbjct: 134 AQSIVAVLLTQIVLM 148
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 90/167 (53%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A K + N P L + +K A A A+Q + S WYG +R +LGP+ +
Sbjct: 14 ARKMVENIPSSALFGEARVTMRKTA--------AKAKQVSSGSPWYGADRVLYLGPLSGE 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSFVHA--QSILAIWACQVVLM 169
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A A+Q + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 154 A--QSILAIWACQVVLM 168
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 89/157 (56%), Gaps = 5/157 (3%)
Query: 84 LLQNRMLETKKA--ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELP 141
+L+ R L ++ AL+D NE LWYG +R ++LGP PSYL GE P
Sbjct: 13 VLKTRFLGQTRSSSALRDVVAMGNGKFTMSNE-LWYGPDRVKYLGPFSAQTPSYLNGEFP 71
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP AF + E++H RWAMLGALG + PEVL+ EPVW++
Sbjct: 72 GDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKA 131
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G LDYLG P +L +Q ++ + Q LLM
Sbjct: 132 GAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVLLM 166
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 98/180 (54%), Gaps = 7/180 (3%)
Query: 65 FSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESL--WYGEERP 122
SA+P + AI+ + G L + +E ++ L+ R A ++ YG R
Sbjct: 123 LSALPIVLLTAISKTEFGAGLA-KSIEDRRPELEAERARVERERAAARATMPAHYGPTRR 181
Query: 123 RWL-GPIPYDYPSYLTGELPGDYGFDVAGL-SKDPMAFQKYFNFEILHARWAMLGALGAL 180
++L Y +P +L G L GD GFD GL S P +Y E+LH RWAMLG +GA
Sbjct: 182 KFLPDGFGYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAMLGVVGAA 241
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGE--TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
VPE L G L EPVWW+VG +KL LDYLG+ G H+AGS G+ VIA CQ +LM
Sbjct: 242 VPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAACQLVLM 301
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
L+NR +K + ++ +S+WYG +RP++LGP PSYLTGE PGDY
Sbjct: 17 LKNRDELVRKVGVVGGRVSMRRTVKSAPQSIWYGADRPKYLGPFSEQTPSYLTGEFPGDY 76
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
G+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 77 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGV-KFGEAVWFKAGAQ 135
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 136 IFSEGGLDYLGNP--NLVHAQSILAIWAVQVVLM 167
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 VQVVLM 166
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG +R +WLGP D PSYLTGE PGDYG+D AGLS DP F Y E++HARWAMLG
Sbjct: 34 FYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELELIHARWAMLG 93
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L E VW++ G LDYLG L A Q ++ I CQ
Sbjct: 94 ALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHA--QSILAILGCQV 151
Query: 236 LLM 238
+LM
Sbjct: 152 VLM 154
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 91/167 (54%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ + P L + +K A A A+ + S WYG +R +LGP+ D
Sbjct: 14 AGKAVKDLPSSALFGEARVTMRKTA--------AKAKPVSSGSPWYGSDRVLYLGPLSGD 65
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 124
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 87/141 (61%), Gaps = 4/141 (2%)
Query: 100 SSKFKALARQARNES--LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA 157
S++ + + R +++ S +WYG +RP +LGP + PSYL GE PGDYG+D AGLS DP +
Sbjct: 30 SNQARVVMRGSKSSSGSMWYGPDRPLFLGPFSGNTPSYLKGEFPGDYGWDTAGLSADPES 89
Query: 158 FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
F + E++H RWAMLGALG + PE+L L EPVW++ G LDYLG P
Sbjct: 90 FARNRALELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNP 149
Query: 218 GLHLAGSQGVIVIAICQALLM 238
+L +Q ++ + Q +LM
Sbjct: 150 --NLIHAQSILAVWAVQVVLM 168
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 40 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 99
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL + EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 100 MLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNP--NLVHAQSILAVLG 157
Query: 233 CQALLM 238
Q LLM
Sbjct: 158 FQVLLM 163
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + +S WYG ERP +LG + PSYLTGE PGDYG+D AGLS DP F++Y
Sbjct: 22 KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRE 81
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VW++ G Q LDYLG +L
Sbjct: 82 LELIHARWAMLGALGCIFPELLGSYGV-PFGEAVWFKAGAQIFQEGGLDYLG--NSNLVH 138
Query: 224 SQGVIVIAICQALLM 238
+Q ++ I Q LLM
Sbjct: 139 AQSILAILGTQVLLM 153
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G Q LDYLG P L +Q ++ CQ
Sbjct: 97 GALGCVTPELLSKNGV-QFGEAVWFKAGAQIFQEGGLDYLGNP--SLVHAQNIVATLACQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 91/167 (54%), Gaps = 11/167 (6%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
A KA+ + P L + +K A A A+ + S WYG +R +LGP+ D
Sbjct: 35 AGKAVKDLPSSALFGEARVTMRKTA--------AKAKPVSSGSPWYGSDRVLYLGPLSGD 86
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 87 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV- 145
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 146 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 190
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWA
Sbjct: 18 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 77
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 78 MLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 134
Query: 233 CQALLM 238
Q +LM
Sbjct: 135 SQVVLM 140
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVILM 168
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 VQVVLM 168
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
++ ++S+WYG +RP++LGP + PSYLTGE GDYG+D AGLS DP F + E++H
Sbjct: 42 KSTSDSIWYGADRPKYLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIH 101
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG L PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 102 ARWAMLGALGCLTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSIL 158
Query: 229 VIAICQALLM 238
I Q +LM
Sbjct: 159 AIWASQVVLM 168
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
N ++ A + + + + A +S+WYG +RP++LGP PSYLTGE PGDYG+
Sbjct: 21 NELVRKTGGAGKGRTTMRRTVKSAP-QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGW 79
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D AGLS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 80 DTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGSQIF 138
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 SEGGLDYLGNP--NLIHAQSILAIWAVQVVLM 168
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L +K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDY
Sbjct: 21 QQNELVSKVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYR 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWAFQVVLM 169
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 96/167 (57%), Gaps = 13/167 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
AVK ++ S EL+ N + +KAA + + A + S WYG +R ++LGP +
Sbjct: 18 AVK-LSPSSASELMGNGRVSMRKAATK---------KVAPSGSPWYGPDRVKYLGPFSGE 67
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 68 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV- 126
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 127 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLM 171
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 47 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 163
Query: 233 CQALLM 238
Q +LM
Sbjct: 164 SQVVLM 169
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 VQVVLM 168
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 VQVVLM 168
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 VQVVLM 168
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVILM 168
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP E L + +KAA + ++ A +S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPTASETLGEGRITMRKAAGK--------SKVATIDSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 79/124 (63%), Gaps = 8/124 (6%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG RP++LGP PSYLTGE PGDYG+D AGLS DP F +Y E++HARWAML
Sbjct: 38 WYGPSRPKFLGPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAML 97
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG +VPE+LD G H+ W+ G + + L YLGIPGL A S ++ I Q
Sbjct: 98 GALGCVVPELLD--GTNHI---AWFNAGATIFSDDGLQYLGIPGLINAKS--IVATLIVQ 150
Query: 235 ALLM 238
+LM
Sbjct: 151 VILM 154
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGESVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVILM 168
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 VQVVLM 168
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 VQVVLM 168
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 84/126 (66%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LG + + P+YLTGE GDYG+D AGLS DP F++Y E++HARWA
Sbjct: 39 DSVWYGPDRPKYLGWLSGETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWA 98
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G + EPVW++ G Q L+YLG +L +Q +IV +
Sbjct: 99 MLGALGCITPELLANNGT-PIAEPVWFKAGAQIFQDGGLNYLG--NENLVHAQSIIVTLL 155
Query: 233 CQALLM 238
Q +LM
Sbjct: 156 VQVILM 161
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 74 KAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
KA+ +P G +L+ N + +K RQ + S WYG +R ++LGP +
Sbjct: 15 KAVQLAPTGNDLMGNGRVTMRKTG-----------RQVSSGSPWYGPDRVKYLGPFSGEP 63
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 64 PSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-K 122
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLM 166
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 SQVVLM 166
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 225 QGVIVIAICQALLM 238
Q ++ + Q +LM
Sbjct: 156 QSILAVLGFQVILM 169
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A+ T VKA +P GE R+ K A + A + S WYG +R +LG
Sbjct: 13 AMAGTPVKASRAAPFGE---GRITMRKTAGKP---------KVAASSSPWYGSDRVLYLG 60
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P+ D PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 61 PLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 121 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
N + A + + + + A +S+WYG +RP++LGP PSYLTGE PGDYG+
Sbjct: 21 NEFVRKTGGAGKGRTNMRRTVKSAP-QSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGW 79
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D AGLS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 80 DTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIF 138
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 SEGGLDYLGNP--NLIHAQSILAIWAVQVVLM 168
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q+ L K Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 21 QHNELVRKVGMSQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 139 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLM 169
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 93 KKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
+KA S+F + R ++ ES+WYG +RP++LGP PSYLTGE PGDYG+D AG
Sbjct: 25 RKAGSFGQSRF-TMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAG 83
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G
Sbjct: 84 LSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGV-KFGEAVWFKAGAQIFSEGG 142
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I + +LM
Sbjct: 143 LDYLGNP--NLIHAQSILAIWATRVVLM 168
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 VQVVLM 166
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 153 -QSILAIWATQVILM 166
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 94/168 (55%), Gaps = 12/168 (7%)
Query: 72 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPY 130
A KA+ SP E+ N + +K+ A A+ A + S WYG +R ++LGP
Sbjct: 14 AGKAVKLSPSSSEITGNGRITMRKSV--------AKAKPASSGSPWYGPDRVKYLGPFSG 65
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 66 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 126 -KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 225 QGVIVIAICQALLM 238
Q ++ + Q +LM
Sbjct: 156 QSILAVLGFQVILM 169
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R + LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRAL 97
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 225 QGVIVIAICQALLM 238
Q ++ + Q +LM
Sbjct: 156 QSILAVLGFQVILM 169
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPELLEKNGV-KFGEAVWFKAGSQIFAEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 TQVVLM 168
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCTFPELLEKNGV-KFGEAVWFKAGSQIFAEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 TQVVLM 168
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 97/180 (53%), Gaps = 13/180 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F KA+ SP E+ N + +K A + A+ + S WYG
Sbjct: 3 ASTMALSSSSFVG-KAVKLSPSSSEITGNGKVTMRKTATK--------AKPVSSGSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RW
Sbjct: 41 SNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 100
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 101 AMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVL 158
Query: 232 ICQALLM 238
Q +LM
Sbjct: 159 GFQVVLM 165
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 VQVVLM 166
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L+ G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGIVFPEILEKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 VQVVLM 168
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 42 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 159
Query: 233 CQALLM 238
Q +LM
Sbjct: 160 FQVVLM 165
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 99 DSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
DS + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 28 DSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 87
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 88 TFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 217 PGLHLAGSQGVIVIAICQALLM 238
P +L +Q ++ I Q +LM
Sbjct: 147 P--NLVHAQSILAIWAVQVVLM 166
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 7/148 (4%)
Query: 92 TKKAALQDSSKFKALARQAR-NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAG 150
++K AL+D +++ QA+ + LWYG +R ++LGP PSYL GE PGDYG+D AG
Sbjct: 24 SRKNALRD----RSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAG 79
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
LS DP AF + E++H RWAMLGALG + PEVL E VW++ G
Sbjct: 80 LSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGG 139
Query: 211 LDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I CQ +LM
Sbjct: 140 LDYLGNP--NLVHAQSILAIWACQVILM 165
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG++ AG+S DP F + E++H+RWA
Sbjct: 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWA 69
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 70 MLGALGCVFPEILAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 126
Query: 233 CQALLM 238
CQ +LM
Sbjct: 127 CQVVLM 132
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 VQVVLM 166
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 98/180 (54%), Gaps = 13/180 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F A KA+ SP E+ N + +K A + A+ + S WYG
Sbjct: 3 ASTMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSGSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGESVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 91/170 (53%), Gaps = 11/170 (6%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + +K A A A+ + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNLPSSALFGEARVTMRKTA--------AKAKPVPSGSPWYGADRVLYLGPL 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 SGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 95/171 (55%), Gaps = 13/171 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
PF A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP
Sbjct: 11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTASK--------AKPVSSGSPWYGPDRVKYLGP 61
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 62 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 122 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
Q L K Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 21 QQNELVKKVGTAQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D A +S DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNG-LKFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDY G P +L +Q ++ I CQ +LM
Sbjct: 139 FSEGGLDYAGNP--NLIHAQSILAIWACQVVLM 169
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 95/171 (55%), Gaps = 13/171 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
PF A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP
Sbjct: 11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTANK--------AKPVSSGSPWYGPDRVKYLGP 61
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 62 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 122 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 106 MLGALGCVFPEILAKNGV-KFGESVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 162
Query: 233 CQALLM 238
Q +LM
Sbjct: 163 SQVVLM 168
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 3 KTAAKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 62
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 63 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 121
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 122 A--QSILAIWACQVVLM 136
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + +K + +A + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNVPSSALFGEARVTMRKTGAKP---------KATSGSPWYGPDRVLYLGPL 61
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 122 GV-QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLM 168
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
A L+D + A R ++ LWYG +R ++LGP PSYL GE PGDYG+D AGLS
Sbjct: 27 NAPLRDIAA-AATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSA 85
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP AF + E++H RWAMLGALG + PEVL+ EPVW++ G LDY
Sbjct: 86 DPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDY 145
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P +L +Q ++ + Q +LM
Sbjct: 146 LGNP--NLVHAQSILAVLGFQVVLM 168
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R ++ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF +
Sbjct: 37 ATGRITMSKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRAL 96
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 97 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP--NLVHA 154
Query: 225 QGVIVIAICQALLM 238
Q ++ + Q +LM
Sbjct: 155 QSILAVLGFQVVLM 168
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
R LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E+
Sbjct: 41 GRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEV 100
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +Q
Sbjct: 101 IHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQS 158
Query: 227 VIVIAICQALLM 238
++ + Q LLM
Sbjct: 159 ILAVLGFQVLLM 170
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 5/142 (3%)
Query: 99 DSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
DS + R ++ +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP
Sbjct: 28 DSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE 87
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 88 TFARNRELELIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 217 PGLHLAGSQGVIVIAICQALLM 238
P +L +Q ++ I Q +LM
Sbjct: 147 P--NLVHAQSILAIWAVQVVLM 166
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 228 IVIAICQALLM 238
+ + Q +LM
Sbjct: 157 LAVLGFQVILM 167
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 44 NDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLG 161
Query: 233 CQALLM 238
Q +LM
Sbjct: 162 FQIVLM 167
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + ++S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAGKTKSVSSDSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFTKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 156 A--QSILAIWACQVILM 170
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 228 IVIAICQALLM 238
+ + Q +LM
Sbjct: 157 LAVLGFQVILM 167
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 228 IVIAICQALLM 238
+ + Q +LM
Sbjct: 157 LAVLGFQVILM 167
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 89 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
+L A + S K K+ A A N S WYG +R +WLGP+ P+YLTGELPGDYG+D
Sbjct: 126 LLPVSVATMATSGK-KSKAPAADNLSQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDT 184
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGL DP+ +Y E++HARWAMLGALG + PE+L G VW++ G
Sbjct: 185 AGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSA 244
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ L+YLG P L A Q V++ + +M
Sbjct: 245 DGLNYLGNPSLIHA--QSVVLTFLSTLAIM 272
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 97/180 (53%), Gaps = 13/180 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F A KA+ SP E+ N + +K A + A+ + S WYG
Sbjct: 3 ASTMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSSSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 PNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLARNGV-KFGEAVWFKGGSQIFSQGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++
Sbjct: 39 KYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGA G + PEVL EPVW++ G LDYLG P +L +Q +
Sbjct: 99 HGRWAMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSI 156
Query: 228 IVIAICQALLM 238
+ + Q +LM
Sbjct: 157 LAVLGFQVILM 167
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
Query: 89 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
+L A + S K K+ A A N S WYG +R +WLGP+ P+YLTGELPGDYG+D
Sbjct: 126 LLPVSVATMATSGK-KSKAPAADNLSQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDT 184
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGL DP+ +Y E++HARWAMLGALG + PE+L G VW++ G
Sbjct: 185 AGLGADPVTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSA 244
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ L+YLG P L A Q V++ + +M
Sbjct: 245 DGLNYLGNPSLIHA--QSVVLTFLSTLAIM 272
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWAT 163
Query: 234 QALLM 238
Q +LM
Sbjct: 164 QVVLM 168
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 173 ILACQVILM 181
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 98/182 (53%), Gaps = 17/182 (9%)
Query: 59 LAGVLVFSAIPFTAVKAI--ANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLW 116
+A +V S+ P A KA+ A SP EL+ N + +K SS S W
Sbjct: 1 MAATMVLSS-PSLAGKAVKLAPSPASELMGNGRISMRKTGKSVSSG-----------SPW 48
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGA
Sbjct: 49 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG + PE+L G E VW++ G LDYLG P L A Q ++ I Q +
Sbjct: 109 LGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWASQVV 165
Query: 237 LM 238
LM
Sbjct: 166 LM 167
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSA-PESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 138
Query: 206 LQGETLDYLGIPGL 219
LDYLG P L
Sbjct: 139 FSEGGLDYLGNPNL 152
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 233 CQALLM 238
Q +LM
Sbjct: 166 FQVVLM 171
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 48 ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 107
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 108 RWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLIHA--QSILA 164
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 165 IWACQVILM 173
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWAM
Sbjct: 44 DLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAM 103
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 104 LGAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNP--NLVHAQSILAVLGF 161
Query: 234 QALLM 238
Q +LM
Sbjct: 162 QVVLM 166
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+RN WYG +R WLGP PSYL GE PGDYG+D AGLS DP F+ Y E++H
Sbjct: 2 SRNAVEWYGPDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIH 61
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAMLGALG + PE+L E VW++ G Q LDYLG P L A Q ++
Sbjct: 62 ARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHA--QSIL 119
Query: 229 VIAICQALLM 238
I CQ +LM
Sbjct: 120 AILGCQVVLM 129
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 3 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 62
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 120
Query: 233 CQALLM 238
Q +LM
Sbjct: 121 FQVVLM 126
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF K E++H RWA
Sbjct: 44 NDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLG 161
Query: 233 CQALLM 238
Q +LM
Sbjct: 162 FQIVLM 167
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + ++S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAGKTKNVSSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 156 A--QSILAIWACQVILM 170
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KAI P E+L + +K A + + + S WYG +R ++LGP
Sbjct: 11 PSLAGKAIKLGPTASEILSEGRVTMRKTAGK--------PKNVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILM 170
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 15 ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 74
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 75 MLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 131
Query: 233 CQALLM 238
Q +LM
Sbjct: 132 FQVVLM 137
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 96 ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 155
A+ +S K+ A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP
Sbjct: 371 AMFAASGRKSAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDP 430
Query: 156 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+Y E++HARWAMLGALG + PE+L G VW++ G + L+YLG
Sbjct: 431 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 490
Query: 216 IPGLHLAGSQGVIVIAICQALLM 238
P L A Q V++ + +M
Sbjct: 491 NPSLIHA--QSVVLTFLSTLAIM 511
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
A A S WYG RP+WLGP+ P YL GE GDYGFD AGL+ DP FQ+Y +
Sbjct: 144 GFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRD 203
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
E+ + RWAMLG LG L PEVL V EPVW++ G + L G ++DYL P L
Sbjct: 204 AELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKL 259
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 43 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 102
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 FQVVLM 166
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 173 ILACQVILM 181
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 89/145 (61%), Gaps = 5/145 (3%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ +++++ K++A A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 42 RLTMREATGKKSVA--ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 99
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 100 DPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 158
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P +L +Q ++ I CQ +LM
Sbjct: 159 LGSP--NLVHAQSILAILACQVILM 181
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDV 148
+ K + + K A + A + +YG R +WLGP + P+YLTGE PGDYG+D
Sbjct: 14 VSAKATGKKGTGKTAAKSAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDT 73
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGLS DP F++Y E++HARWAMLGALG L PE+L G E VW++ G
Sbjct: 74 AGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGT-QFGEAVWFKAGAQIFSE 132
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ CQ +LM
Sbjct: 133 GGLDYLGNPSLVHA--QNIVATLACQVILM 160
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Query: 100 SSKFKALARQARNESL-------WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLS 152
SSK + R + +S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 24 SSKVRGDGRISMRKSFAKPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 83
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLD 212
DP F K E++H RWAMLGALG + PE+L G E VW++ G LD
Sbjct: 84 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLD 142
Query: 213 YLGIPGLHLAGSQGVIVIAICQALLM 238
YLG PGL A Q ++ I CQ +LM
Sbjct: 143 YLGNPGLVHA--QSILAIWACQVILM 166
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 153 -QSILAIWATQVILM 166
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 91/167 (54%), Gaps = 16/167 (9%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
AVK ++P EL+ N + K+ R + S WYG +R ++LGP +
Sbjct: 17 AVKLSPSAP--ELMGNGRISMKRTT-----------RPVSSGSPWYGPDRVKYLGPFSGE 63
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H RWAM GALG + PE+L G
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRNGV- 122
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G Q LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 KFGEAVWFKAGSQIFQEGGLDYLGNPSLIHA--QSILAIWACQVILM 167
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 14/170 (8%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ +P E++ N + +K + + S WYG +R ++LGP
Sbjct: 11 PSLAGKAVKLNPFSEIMGNGCISMRKTT-----------KPVPSGSPWYGPDRVKYLGPF 59
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 60 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 120 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWATQVVLM 166
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ ++ S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 160 LAIWACQVILM 170
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 25 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 84
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PEVL G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 85 LGALGCVFPEVLSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWAV 141
Query: 234 QALLM 238
Q +LM
Sbjct: 142 QVVLM 146
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KAI P E+L + +K A + + + S WYG +R ++LGP
Sbjct: 11 PSLAGKAIKLGPTASEILGEGRVTMRKTAGK--------PKNVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVILM 170
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 173 ILACQVILM 181
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 173 ILACQVILM 181
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 97/180 (53%), Gaps = 13/180 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F A KA+ SP E+ N + +K + A+ + S WYG
Sbjct: 3 AATMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTVTK--------AKPLSSGSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 54 PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ + + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 42 GKYSMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 102 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 159
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 160 ILAVLGFQVVLM 171
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 7/158 (4%)
Query: 81 LGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGEL 140
LG + N + E + + +SK ++ + S WYG +R ++LGP + PSYLTGE
Sbjct: 20 LGSSVSNIVGEGRITMRKTASK----SKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF 75
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 76 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFK 134
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G LDYLG P L A Q ++ I Q +LM
Sbjct: 135 AGAQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILM 170
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 41 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 100
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 101 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 158
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 159 ILAVLGFQVILM 170
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 40 GKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 99
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 100 IHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 157
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 158 ILAVLGFQVILM 169
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 96 ALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 155
A+ +S K+ A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP
Sbjct: 575 AMFAASGRKSAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDP 634
Query: 156 MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+Y E++HARWAMLGALG + PE+L G VW++ G + L+YLG
Sbjct: 635 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 694
Query: 216 IPGLHLAGSQGVIVIAICQALLM 238
P L A Q V++ + +M
Sbjct: 695 NPSLIHA--QSVVLTFLSTLAIM 715
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Query: 81 LGELLQNRM--LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTG 138
L + +N + L + A L S + A ++ N S WYG +R +WLGP+ + PSYLTG
Sbjct: 97 LTDPFENNLFQLTSGFAMLATSGRKAKAAPKSDNLSQWYGPDRAKWLGPLTGEVPSYLTG 156
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
ELPGDYG+D AGL DP +Y E++HARWAMLGALG + PE+L G VW
Sbjct: 157 ELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVW 216
Query: 199 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
++ G + L+YLG P L A Q V++ + +M
Sbjct: 217 YKAGAQIFSADGLNYLGNPSLIHA--QSVVLTFLSTLAIM 254
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
A A S WYG RP+WLGP+ P YL GE GDYGFD AGL+ DP FQ+Y
Sbjct: 347 SGFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYR 406
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
+ E+ + RWAMLG LG L PEVL V EPVW++ G + L G ++DYL P L
Sbjct: 407 DAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKL 463
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +R +WLG P YLTGELPGDYG+D AGL DP +Y +++H RWAMLG
Sbjct: 838 YGPDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAMLGV 897
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG PE ++ G EPVW++ G + L+YLG PGL A Q V++ + +
Sbjct: 898 LGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHA--QSVVLTFLSTLV 955
Query: 237 LM 238
LM
Sbjct: 956 LM 957
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 35 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 152
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 153 -QSILAIWATQVILM 166
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A +S +YG +R +LGP D PSYLTGE PGDYG+D GLS DP F Y E++
Sbjct: 37 KSATPDSPFYGPDRVTFLGPFT-DVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELM 95
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
HARWAMLG LG +PE L+ + E VW++ G Q LDYLG P L A Q +
Sbjct: 96 HARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHA--QSI 153
Query: 228 IVIAICQALLM 238
I QALLM
Sbjct: 154 IATVFIQALLM 164
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 227 VIVIAICQALLM 238
++ I CQ +LM
Sbjct: 159 ILAIWACQVVLM 170
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A +S +YG +R +LGP D PSYLTGE PGDYG+D GLS DP F Y E++
Sbjct: 37 KSATPDSPFYGPDRVTFLGPFT-DVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELM 95
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
HARWAMLG LG +PE L+ + E VW++ G Q LDYLG P L A Q +
Sbjct: 96 HARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNPSLVHA--QSI 153
Query: 228 IVIAICQALLM 238
I QALLM
Sbjct: 154 IATVFIQALLM 164
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 89 MLETKKAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGD 143
M K+A++ S + +R AR WYG +RP++LGP D PSYLTGE PGD
Sbjct: 1 MAAIAKSAVRSSVRPTVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDVPSYLTGEFPGD 60
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGA 120
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG +L +Q +I Q ++M
Sbjct: 121 QIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVM 153
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 233 CQALLM 238
Q +LM
Sbjct: 166 FQVVLM 171
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R + LWYG +R ++LGP PSYLTGE GDYG+D AGLS DP AF +
Sbjct: 38 ANGRITMSNDLWYGPDRVKYLGPFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRAL 97
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGS 224
E++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +
Sbjct: 98 EVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHA 155
Query: 225 QGVIVIAICQALLM 238
Q ++ + Q +LM
Sbjct: 156 QSILAVLGFQVILM 169
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 227 VIVIAICQALLM 238
++ I CQ +LM
Sbjct: 159 ILAIWACQVVLM 170
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K A+ + S WYG +R ++LGP + PSYLT E PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKPVSSSSPWYGPDRVKYLGPFSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 155 -QSILAIWACQVILM 168
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 48 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGA G + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 108 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 165
Query: 233 CQALLM 238
Q +LM
Sbjct: 166 FQVVLM 171
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 37 GKYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEV 96
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 97 IHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNP--NLVHAQS 154
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 155 ILAVLGFQVVLM 166
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E+
Sbjct: 39 GKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEV 98
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EP+W++ G LDYLG P +L +Q
Sbjct: 99 IHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQS 156
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 157 ILAVLGFQVVLM 168
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLIHAQSILA 172
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 173 ILACQVILM 181
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 152
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 153 -QSILAIWATQVILM 166
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHG 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 173 ILACQVILM 181
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 173 IWACQVILM 181
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYG ER +WLGP + P YLTGE GDYG+D AGLS DP F++Y E++HARWAMLG
Sbjct: 40 WYGPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 99
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G Q L+YLG L A Q ++ CQ
Sbjct: 100 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNSSLIHA--QSILATLACQV 156
Query: 236 LLM 238
+LM
Sbjct: 157 ILM 159
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K+ +R + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 33 KSASRNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 92
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 93 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 150
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q LLM
Sbjct: 151 -QSILAIWATQVLLM 164
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +QA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 34 KTVTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 93
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 94 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSLIFSEGGLDYLGNPSLIHA- 151
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 152 -QSILAIWATQVILM 165
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 43 KNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 102
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 103 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 159
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 160 LAIWACQVILM 170
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E++H RWA
Sbjct: 47 NELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PEVL+ EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 107 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLG 164
Query: 233 CQALLM 238
Q +LM
Sbjct: 165 FQVVLM 170
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 94
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 95 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 152
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 153 -QSILAIWATQVILM 166
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 38 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVI 97
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 98 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 154
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 155 LAIWACQVVLM 165
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 95/179 (53%), Gaps = 12/179 (6%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGE 119
A + S+ F A KA+ E+ +N + +K + A+ + S WYG
Sbjct: 3 AATMALSSSSF-AGKAVNVPSSSEITRNGKVTMRKTVTK--------AKPVSSGSPWYGP 53
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW MLGALG
Sbjct: 54 DRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGC 113
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+ G E VW++ G + LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 VFPELFARNGV-KFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QSILAIWACQVVLM 169
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP EL+ N + +K A A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKLSPSAPELMGNGRVSMRKTA----------AKNVSSGSPWYGPDRVKYLGP 60
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 121 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWASQVVLM 168
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 73 VKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
VK +SP EL N + +K+A + S + S WYG +R ++LGP +
Sbjct: 18 VKLTPSSP--ELFGNSRVTMRKSATKSVS----------SGSPWYGPDRVKYLGPFSGEP 65
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-K 124
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWASQVVLM 168
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D A +S DP F K E++H RWA
Sbjct: 7 ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWA 66
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 67 MLGALGCVFPELLVKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWA 123
Query: 233 CQALLM 238
CQ +LM
Sbjct: 124 CQVVLM 129
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 229 VIAICQALLM 238
I CQ +LM
Sbjct: 158 AIWACQVILM 167
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGE 119
A + S+ F +S E+ N + +K + A+ A + S WYG
Sbjct: 3 ATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTK--------AKPASSSSPWYGP 54
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+R ++LGP + PSYLTGE P DYG+D AGLS DP F K E++H RWAMLGALG
Sbjct: 55 DRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 114
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+ G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 115 VFPELFARNG-IKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 95/171 (55%), Gaps = 9/171 (5%)
Query: 71 TAVKAIANSPLGELLQNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGP 127
TA A+++S +G+ + L L + + K ++ + S WYG +R ++LGP
Sbjct: 3 TATMALSSSFVGKAVN---LAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGP 59
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLM 167
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 81/129 (62%), Gaps = 5/129 (3%)
Query: 112 NESL--WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
NE L +YG +R WLGP+ P+YLTGE PGDYG+D AGLS DP F++Y E++HA
Sbjct: 40 NEKLGAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHA 99
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G + EPVW++ G Q LDYLG GL A Q ++
Sbjct: 100 RWAMLGALGCVTPELLAKNGT-PIAEPVWFKAGAQIFQEGGLDYLGNAGLIHA--QSILA 156
Query: 230 IAICQALLM 238
Q +LM
Sbjct: 157 TLAVQVILM 165
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 229 VIAICQALLM 238
I CQ +LM
Sbjct: 158 AIWACQVILM 167
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E++H RWAM
Sbjct: 43 DLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAM 102
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PEVL E VW++ G LDYLG P +L +Q ++ I C
Sbjct: 103 LGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNP--NLVHAQSILAIWAC 160
Query: 234 QALLM 238
Q +LM
Sbjct: 161 QVILM 165
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 38 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 97
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 98 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 154
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 155 LAIWACQVVLM 165
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 126 GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
GP+ PSYL GE PGDYG+D AGLS DP F +Y E++HARWAMLGALG L PE+L
Sbjct: 5 GPLSSATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELL 64
Query: 186 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G F EPVWW+ G L E LDYLG P +L +Q ++ Q +LM
Sbjct: 65 SQNG-FTFQEPVWWKAGAQILSSEGLDYLGKP--NLVHAQSIVATLAVQVILM 114
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 89/156 (57%), Gaps = 8/156 (5%)
Query: 89 MLETKKAALQDSSKFKALARQA-----RNESLWYGEERPRWLGPIPY-DYPSYLTGELPG 142
M K+AL+ S + +A +A R WYG +RP++LGP D P+YLTGE PG
Sbjct: 1 MAVVAKSALRSSVRPATVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPG 60
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L E VW++ G
Sbjct: 61 DYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAG 120
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG +L +Q +I Q ++M
Sbjct: 121 AQIFAEGGLNYLG--NENLVHAQSIIATLAFQVVVM 154
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLG
Sbjct: 44 WYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 103
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ
Sbjct: 104 ALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--SLVHAQSILAIWACQV 160
Query: 236 LLM 238
+LM
Sbjct: 161 VLM 163
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 362 WYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 421
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 422 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 478
Query: 235 ALLM 238
+LM
Sbjct: 479 VVLM 482
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 602 WYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 661
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 662 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 718
Query: 235 ALLM 238
+LM
Sbjct: 719 VVLM 722
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 122 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 181
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 182 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 238
Query: 235 ALLM 238
+LM
Sbjct: 239 VVLM 242
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
++S+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E++HARW
Sbjct: 45 SDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARW 104
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 105 AMLGALGCVTPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 161
Query: 232 ICQALLM 238
Q +LM
Sbjct: 162 ASQVILM 168
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L K A + + A + + + S+WYG +RP +LGP PSYLTGE PGDYG+D A
Sbjct: 24 LSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTA 83
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
GLS DP F K E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 84 GLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGV-KFGEAVWFKAGSQIFAEG 142
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I Q +LM
Sbjct: 143 GLDYLGNPSLVHA--QSILAIWAFQVVLM 169
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ ++ S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 8 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 67
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 68 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 124
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 125 LAIWACQVILM 135
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+A + S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 41 KAPSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 101 CRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSIL 157
Query: 229 VIAICQALLM 238
I CQ +LM
Sbjct: 158 AIWACQVILM 167
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 86/145 (59%), Gaps = 4/145 (2%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K ++ A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTTKKVSASA-SPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 96
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 97 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 155
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 156 LGNPSLIHA--QSILAIWACQVILM 178
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 95/169 (56%), Gaps = 6/169 (3%)
Query: 71 TAVKAIANSPL-GELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIP 129
TA A+++S G+ ++N L A K A A+ + S WYG +R +LGP+
Sbjct: 3 TATMALSSSTFAGKAVKN--LPALGEARITMRKTVAKAKPVSSGSPWYGSDRVLYLGPLS 60
Query: 130 YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G
Sbjct: 61 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 120
Query: 190 AFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 121 V-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 166
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP EL+ N + +K + S S WYG +R ++LGP
Sbjct: 11 PAFAGKAVKLSPSAPELMGNGRVNMRKTFNKPPSG-----------SPWYGPDRVKYLGP 59
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 60 LSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 167
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 94/167 (56%), Gaps = 13/167 (7%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
AVKA ++ ELL N + +K A A + A + S WYG +R ++LGP +
Sbjct: 4 AVKAAPSN--SELLGNGRVSMRKTA--------APKKVAPSGSPWYGPDRVKYLGPFSGE 53
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 54 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV- 112
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 113 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILM 157
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 90/172 (52%), Gaps = 7/172 (4%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A P T P E + + A++ + + A S WYG +R ++LG
Sbjct: 2 AAPSTFAGQTGLKPQNEFVARNASNGSRVAMRKTGR----ASSVGGGSPWYGPDRVKYLG 57
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 58 PFSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 117
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G + LDYLG P L A Q ++ I Q +LM
Sbjct: 118 KNG-IKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QSILAIWASQVILM 166
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K+ +R + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSASRNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 154 -QSILAIWATQVILM 167
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 89/166 (53%), Gaps = 12/166 (7%)
Query: 73 VKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
V+ AN EL R K A + + A + S WYG +R ++LGP +
Sbjct: 18 VETSANPSSQELGGARFTMRKSATTK---------KVASSGSPWYGPDRVKYLGPFSGES 68
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-K 127
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 128 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILM 171
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + ++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 SQVVLM 166
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 79/132 (59%), Gaps = 8/132 (6%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ A S WYG +RP +LG PSYL GE PGDYG+D AGLS DP F +Y E+
Sbjct: 57 AKSASGASFWYGADRPGYLGAFTRS-PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEV 115
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGALG +VPE+LD H+ W+ G + + + YLG+PG L ++
Sbjct: 116 IHARWAMLGALGIVVPELLDQTN--HV---AWFDAGATIFGPKGIQYLGVPG--LINAKN 168
Query: 227 VIVIAICQALLM 238
+I Q +LM
Sbjct: 169 IIATVAVQVILM 180
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 49 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 108
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 109 LGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAC 165
Query: 234 QALLM 238
Q +LM
Sbjct: 166 QVVLM 170
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + P++L G E +W++ G Q LDYLG L L +Q ++ CQ
Sbjct: 97 GALGCVTPKLLSKNGV-QFSEALWFKAGAQIFQEGGLDYLG--NLSLVHAQNIVATLACQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PE+ G E VW++ G LDYLG P L A Q
Sbjct: 101 IHCRWAMLGALGCVFPELFARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QS 157
Query: 227 VIVIAICQALLM 238
++ I CQ +LM
Sbjct: 158 ILAIWACQVVLM 169
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP PSYLTGE PGDYG+D AGLS DP AF + E+
Sbjct: 4 GKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEV 63
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EP+W++ G LDYLG P +L +Q
Sbjct: 64 IHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQS 121
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 122 ILAVLGFQVVLM 133
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 63
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG + PE+L G E VW++ G LDYLG P +L +Q ++ I CQ +
Sbjct: 64 LGCVFPEILSKNG-IKFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWACQVV 120
Query: 237 LM 238
LM
Sbjct: 121 LM 122
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 38 KAAGKVADSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 97
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 98 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 155
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 156 -QSILAIWATQVVLM 169
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 91/164 (55%), Gaps = 6/164 (3%)
Query: 75 AIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPS 134
A+A P+ ++ L K ++ + K +A S WYG +R ++LGP + PS
Sbjct: 12 ALAGKPVKLTPSSQELGVAKFTMRKGATTKKVASSG---SPWYGPDRVKYLGPFSGEPPS 68
Query: 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194
YLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 69 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFG 127
Query: 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 128 EAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILM 169
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 139 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 198
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 199 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 255
Query: 235 ALLM 238
+LM
Sbjct: 256 VVLM 259
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP PSYLTGE PGDYG+D AGL+ DP+ F KY E++HARWAML
Sbjct: 379 WYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 438
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE L G L EPVW++ G LDYLG +L +Q ++ I Q
Sbjct: 439 GALGVVFPEALAKAGV-PLAEPVWFKAGAQIFSEGGLDYLG--NSNLVHAQSILAILAFQ 495
Query: 235 ALLM 238
+LM
Sbjct: 496 VVLM 499
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 43 ASSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 160 IWACQVILM 168
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E+
Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PE+ G E VW + G LDYLG P L A Q
Sbjct: 102 IHCRWAMLGALGCVFPELFARNGV-KFGEAVWLKAGSQIFSEGGLDYLGNPSLVHA--QS 158
Query: 227 VIVIAICQALLM 238
++ I CQ LLM
Sbjct: 159 ILAIWACQVLLM 170
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 SQVVLM 166
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A+ T VK +P GE R+ K AA S + S WYG +R +LG
Sbjct: 11 AMAGTPVKVSRATPFGE---GRITMRKTAAKPKVSA---------SGSPWYGSDRVLYLG 58
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 59 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 119 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 167
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 104 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 SQVVLM 166
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 112 NESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 170
N S WYG R +WLGP PSYLTGELPGDYG+D AGL DP Q+Y E++H R
Sbjct: 237 NLSAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 296
Query: 171 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
WAMLGA+G +PE L+ EP+W++ G E L+Y G P L A S ++ I
Sbjct: 297 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAI 354
Query: 231 AICQALLM 238
Q LLM
Sbjct: 355 LATQVLLM 362
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 120 ERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R +WLGP P YL GELPGDYG+D AGL DP+ Q+Y E++H RWAMLGALG
Sbjct: 2 DRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALG 61
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE L + EPVW++ G LDYLG L +Q +++I Q LLM
Sbjct: 62 VVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLG--DARLVHAQSILLILGTQVLLM 119
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A+ T VK +P GE R+ K AA S + S WYG +R +LG
Sbjct: 12 AMAGTPVKVSRATPFGE---GRITMRKTAAKPKVSA---------SGSPWYGSDRVLYLG 59
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 60 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 119
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 168
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 88 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 147
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGALG + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 148 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 205
Query: 227 VIVIAICQALLM 238
V++ + +M
Sbjct: 206 VVLTFLSTLAIM 217
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 323 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 382
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAML + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 383 IHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 435
Query: 227 VIVIAICQALLM 238
V++ + +M
Sbjct: 436 VVLTFLSTLAIM 447
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 112 NESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 170
N S WYG R +WLGP PSYLTGELPGDYG+D AGL DP Q+Y E++H R
Sbjct: 464 NLSAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 523
Query: 171 WAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVI 230
WAMLGA+G +PE L+ EP+W++ G E L+Y G P L A S ++ I
Sbjct: 524 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAI 581
Query: 231 AICQALLM 238
Q LLM
Sbjct: 582 LATQVLLM 589
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 74/126 (58%), Gaps = 3/126 (2%)
Query: 114 SLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
S WYG +R +WLGP P YL GELPGDYG+D AGL DP+ Q+Y E++H RWA
Sbjct: 223 SQWYGPDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWA 282
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE L + EPVW++ G LDYLG L +Q +++I
Sbjct: 283 MLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLG--DARLVHAQSILLILG 340
Query: 233 CQALLM 238
Q LLM
Sbjct: 341 TQVLLM 346
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGELPGDYG+D AGL DP Q+Y E++H RWAMLGA+G +PE L+
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
EP+W++ G E L+Y G P L A S ++ I Q LLM
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKS--LLAILATQVLLM 105
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 12 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 71
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 72 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--NLVHAQSILA 128
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 129 IWACQVILM 137
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 36 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 95
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGALG + PE+L G VW++ G + L+YLG P L A Q
Sbjct: 96 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHA--QS 153
Query: 227 VIVIAICQALLM 238
V++ + +M
Sbjct: 154 VVLTFLSTLAIM 165
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 64/96 (66%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A ++ N S WYG +R +WLGP+ + PSYLTGELPGDYG+D AGL DP +Y E+
Sbjct: 271 APKSDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEV 330
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
+HARWAMLGALG + PE+L G VW++ G
Sbjct: 331 IHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAG 366
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 104 KALARQ---ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQK 160
KA R+ A +S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 47 KATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 106
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLH 220
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P
Sbjct: 107 NRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--Q 163
Query: 221 LAGSQGVIVIAICQALLM 238
L +Q ++ I CQ +LM
Sbjct: 164 LIHAQSILAIWACQVILM 181
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 45 AASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 104
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 105 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 161
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 162 IWACQVILM 170
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 89/157 (56%), Gaps = 7/157 (4%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESL-WYGEERPRWLGPIPYD-YPSYLTGELP 141
LL N + + + + S K+ +Q S+ WYG +RP++LGP PSYL GE P
Sbjct: 5 LLSNSFVVSARRTV---SSPKSKGKQVTRASIEWYGPDRPKFLGPYSDGATPSYLKGEYP 61
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F +Y E++H+RWA+LG LG + PE+L+ G E VW++
Sbjct: 62 GDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKA 121
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G + L+YLG P L A Q +I Q +L+
Sbjct: 122 GAQIFSADGLNYLGNPSLVHA--QSIIATVATQVILL 156
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 5 KPVSSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 64
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 65 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 121
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 122 LAIWACQVILM 132
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 30 KTAAKPKPAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 89
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 90 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 148
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 149 A--QSILAIWACQVVLM 163
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A A+ + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 3 KTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 62
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 63 RELELIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 121
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 122 A--QSILAIWACQVVLM 136
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 115
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++
Sbjct: 116 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGWLDYLGSP--NLVHAQSILA 172
Query: 230 IAICQALLM 238
I CQ +LM
Sbjct: 173 IWACQVILM 181
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 9 KVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 68
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 69 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 125
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 126 LAIWACQVVLM 136
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 99 DSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
DS + R ++ +S+WYG +RP++LGP PSYLTGE PGDY +D AGLS DP
Sbjct: 18 DSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPE 77
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGI 216
F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG
Sbjct: 78 TFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGN 136
Query: 217 PGLHLAGSQGVIVIAICQALLM 238
P +L +Q ++ I Q +LM
Sbjct: 137 P--NLVHAQSILAIWAVQVVLM 156
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 155 A--QSILAIWATQVILM 169
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 95
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 155 A--QSILAIWATQVILM 169
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 91/170 (53%), Gaps = 11/170 (6%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A K + SP + L +K+A + A + S WYG +R ++LGP
Sbjct: 11 PTLAGKPVKLSPSSQELGASRFTMRKSATTK--------KVASSGSPWYGPDRVKYLGPF 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVVLM 169
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P T P E + + A++ + K A S WYG +R ++LGP
Sbjct: 13 PSTFAGQTGLKPQNEFVARNASNGSRIAMRKTGK----ASSVGGGSPWYGPDRVKYLGPF 68
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 69 SGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKN 128
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G + LDYLG P L A Q ++ I Q +LM
Sbjct: 129 G-IKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHA--QSILAIWASQVILM 175
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+++WYG +RP++LGP PSYLTG+ PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QNIWYGPDRPKYLGPFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG PE+L G + E VW++ G LDYLG P L Q ++ I
Sbjct: 104 MLGALGCFFPEILSKNGV-NFGEAVWFKAGAQIFSEGGLDYLGNPA--LVRPQSILAIWA 160
Query: 233 CQALLM 238
Q +LM
Sbjct: 161 VQVVLM 166
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 85/155 (54%), Gaps = 13/155 (8%)
Query: 95 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 143
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG L A Q +I Q +LM
Sbjct: 122 QIFAAGGLNYLGNESLIHA--QSIIATLAVQVVLM 154
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTAAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q LLM
Sbjct: 156 A--QSILAIWATQVLLM 170
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 36 KAASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 154 -QSILAIWATQVILM 167
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 76 IANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSY 135
+A P+ ++ L + ++ S+ K +A S WYG +R ++LGP + PSY
Sbjct: 13 LAGKPVKLTPSSQELGAARFTMRKSATTKKVASSG---SPWYGPDRVKYLGPFSGEPPSY 69
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
LTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E
Sbjct: 70 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGE 128
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 129 AVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILM 169
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 91/170 (53%), Gaps = 11/170 (6%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A K + +P + L +KAA + A + S WYG +R ++LGP
Sbjct: 11 PTLAGKPVKLTPSSQELGAARFTMRKAATTK--------KVASSGSPWYGPDRVKYLGPF 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 123 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWATQVILM 169
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ + S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 54 KTVSSGSPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 113
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 114 HCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 170
Query: 228 IVIAICQALLM 238
+ I Q LLM
Sbjct: 171 LAIWATQVLLM 181
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 8 KVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 67
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG++ PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 68 HSRWAMLGALGSVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 124
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 125 LAIWATQVILM 135
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVTSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 154 -QSILAIWATQVILM 167
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 154 -QSILAIWATQVILM 167
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
+S K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F
Sbjct: 31 ASMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 90
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
+ E++H+RWAMLGALG + PE L G E VW++ G LDYLG P L
Sbjct: 91 RNRELEVIHSRWAMLGALGIVFPEPLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSL 149
Query: 220 HLAGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 150 IHA--QSILAIWATQVILM 166
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
RQ+ WYG +R +++GP PSYLTGE PGDYG+D AGLS +P F K E++
Sbjct: 44 RQSITGGPWYGPDRVKYMGPFSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVI 103
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
HARWAMLG +G +VPE+L+ G + E VW++ G + E L+YLG P L +Q +
Sbjct: 104 HARWAMLGTVGCIVPELLERNGV-KIGEAVWFKAGSQIFRDEGLNYLGDP--KLIHAQNI 160
Query: 228 IVIAICQALLM 238
+ + Q +LM
Sbjct: 161 LAVLAAQVILM 171
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE GDYG+D AGLS DP F + E++H+RWA
Sbjct: 37 QSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 96
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 97 MLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWA 153
Query: 233 CQALLM 238
Q +LM
Sbjct: 154 SQVVLM 159
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L +Q ++ CQ
Sbjct: 97 GALGCLTPELLAKNGT-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQNIVATLACQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 91/170 (53%), Gaps = 12/170 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + + +K + + + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNMPSSALFGDARMTMRKTGAKP---------KVASGSPWYGPDRVLYLGPL 61
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE GDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 62 SGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 122 GV-QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLM 168
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 85/155 (54%), Gaps = 13/155 (8%)
Query: 95 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 143
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG L A Q +I Q +LM
Sbjct: 122 QIFADGGLNYLGNESLIHA--QSIIATLAVQVVLM 154
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 45 KVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 104
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 105 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 161
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 162 LAIWATQVILM 172
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 153
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 154 A--QSILAIWACQVVLM 168
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 91/170 (53%), Gaps = 12/170 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ N P L + +K + +A + S WYG +R +LGP+
Sbjct: 11 PAFAGKAVKNVPSSGLFGEARMTMRKTGAKP---------KAASGSPWYGPDRVLYLGPL 61
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE GDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 62 SGEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 122 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVVLM 168
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNES--LWYGEERPRWLGPIPYD-YPSYLTGELP 141
+ L+ A K A+QA S +YG R +WLGP + P+YLTGE P
Sbjct: 7 FSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFP 66
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++
Sbjct: 67 GDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGT-QFGEAVWFKA 125
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G LDYLG P L A Q ++ Q +LM
Sbjct: 126 GAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQVILM 160
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 59 DSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 119 MLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--QLIHAQSILAIWA 175
Query: 233 CQALLM 238
CQ +LM
Sbjct: 176 CQVILM 181
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 85/155 (54%), Gaps = 13/155 (8%)
Query: 95 AALQDSSKFKALA-RQARNESL---------WYGEERPRWLGPIP-YDYPSYLTGELPGD 143
AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGD
Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGD 61
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G
Sbjct: 62 YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG L A Q +I Q +LM
Sbjct: 122 QIFADGGLNYLGNESLIHA--QSIIATLAVQVVLM 154
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 36 KTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG++ PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGSVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 154 -QSILAIWASQVILM 167
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP E+ N +K + A+ + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKFSPSSSEITGNGKATMRKTVTK--------AKPVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D A LS DP F K E++H RWAMLGALG + PE+L
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 122
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 123 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 97/174 (55%), Gaps = 10/174 (5%)
Query: 69 PFTAVKAIANSPLGELL--QNRMLETKKAALQDSSKFKALARQAR--NESLWYGEERPRW 124
P A KA+ SP L+ + R+ K S++ + A + R S WYG +R ++
Sbjct: 13 PSFAGKAVKISPSNVLIFGEGRITMQDKTT---SNRPRTTAGKLRPATSSPWYGPDRVKY 69
Query: 125 LGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+
Sbjct: 70 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPEL 129
Query: 185 LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L G E VW++ G LDYLG P +L +Q ++ I Q +LM
Sbjct: 130 LARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAVQVVLM 180
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 153 A--QSILAIWACQVVLM 167
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 153 A--QSILAIWACQVVLM 167
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 95
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 155 LGNPSLVHA--QSILAIWACQVILM 177
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K+ A + + S WYG +
Sbjct: 9 GSCAFAGGQLSSLKPHTNQLLG--VGAGVHGESRVTMRKSATKKSFA--SASPSPWYGPD 64
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 65 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 124
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 125 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 179
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
LWYG +R ++LGP PSYLTGE PG+YG+D AGLS DP AF K E++H RWAM
Sbjct: 1 DLWYGPDRVKYLGPFSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAM 60
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGA G + PEVL EPVW++ G LDYLG P +L +Q ++ +
Sbjct: 61 LGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGF 118
Query: 234 QALLM 238
Q +LM
Sbjct: 119 QVILM 123
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K+ A + + S WYG +
Sbjct: 4 GSCAFAGGQLSSLKPHTNQLLG--VGAGIHGESRVTMRKSATKKSFA--SASPSPWYGPD 59
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 60 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 174
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 154
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 155 A--QSILAIWACQVVLM 169
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 8 KVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 67
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 68 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 124
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 125 LAIWATQVILM 135
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 154 -QSILAIWATQVILM 167
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 98/178 (55%), Gaps = 7/178 (3%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K++A + + S WYG +
Sbjct: 4 GSCAFAGGQLSSLKPHTNQLLG--VGAGVHGESRVTMRKSATKKSVA--SASPSPWYGPD 59
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 60 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 119
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 174
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 91/167 (54%), Gaps = 16/167 (9%)
Query: 72 AVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD 131
AVK +SP EL+ N + +K SS S WYG +R ++LGP +
Sbjct: 17 AVKLSPSSP--ELMGNGRVSMRKTTKPVSSG-----------SPWYGPDRVKYLGPFSGE 63
Query: 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV- 122
Query: 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWATQVVLM 167
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 29 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 88
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 89 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 147
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 148 A--QSILAIWACQVVLM 162
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 35 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 92
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 93 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 151
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 152 LGNPSLVHA--QSILAIWACQVILM 174
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 83/135 (61%), Gaps = 5/135 (3%)
Query: 107 ARQARNESL-WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
+RQ S+ +YG +R +WLGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 21 SRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREI 80
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVE-PVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG L PE+L GA E VW++ G S + L+YLG P L A
Sbjct: 81 EVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHA- 139
Query: 224 SQGVIVIAICQALLM 238
Q ++ + + Q ++M
Sbjct: 140 -QSIVAVLLTQLVIM 153
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ + LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF K E+
Sbjct: 42 GKYTMSNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEV 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWA+LGALG + PEVL EPVW++ G LDYLG P +L +Q
Sbjct: 102 IHGRWALLGALGCITPEVLGKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQS 159
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 160 ILAVLGFQVVLM 171
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Query: 116 WYGEERPRWLGPIPY--DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
WYG +RP+WL P + P YLTGE PGDYG+D GLS DP F Y E+LHARWAM
Sbjct: 125 WYGPDRPKWL-PDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAM 183
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
LGALG + PE+L M L EPVW++ G L +++DYLG P L
Sbjct: 184 LGALGCIFPEILAMNYGVGLEEPVWFKAGALVLNDKSIDYLGSPQL 229
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 40 KPAASGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 100 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 156
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 157 LAIWACQVVLM 167
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 93/174 (53%), Gaps = 21/174 (12%)
Query: 69 PFTAVKAIANSPLG-ELLQN---RMLETKKAALQDSSKFKALARQARNESLWYGEERPRW 124
P A KA+ +P EL N M +T KA + DS WYG +R ++
Sbjct: 11 PALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSDSP--------------WYGPDRVKY 56
Query: 125 LGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+
Sbjct: 57 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 116
Query: 185 LDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L G E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 117 LARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILSIWATQVILM 167
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 75 AIANSPL--GELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
A+A +P+ G + R+ K AA + A + S WYG +R ++LGP +
Sbjct: 12 AMAGTPIKVGSFGEGRITMRKTAAKP---------KVAASGSPWYGPDRVKYLGPFSGEP 62
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-K 121
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 122 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAVQVVLM 165
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RW
Sbjct: 56 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 115
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 116 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 172
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 173 ACQVILM 179
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 95
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 155 LGNPSLIHA--QSILAIWACQVILM 177
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ S+ K+ A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 35 RVTMRKSAAKKSFA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 92
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 93 DPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDY 151
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 152 LGNPSLIHA--QSILAIWACQVILM 174
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 90/159 (56%), Gaps = 10/159 (6%)
Query: 80 PLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGE 139
P+ EL +R + T +A +Q + K+ + R YG +R +LGP PSYLTGE
Sbjct: 27 PVNEL--SRKVGTSEARVQMMAPKKSSSGNIR-----YGADRLLYLGPFSGSPPSYLTGE 79
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW+
Sbjct: 80 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGV-KFGEAVWF 138
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 139 KAGSQIFADGGLDYLGNPSLVHA--QSILAIWACQVILM 175
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 33 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 150
Query: 235 ALLM 238
++M
Sbjct: 151 VVVM 154
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 96/180 (53%), Gaps = 13/180 (7%)
Query: 60 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
A + S+ F A KA+ SP E+ N +K A A A+ + S WYG
Sbjct: 3 AATMALSSSTF-AGKAVKLSPSSSEITGNGRFTMRKTA--------AKAKPVSSGSPWYG 53
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWA+L LG
Sbjct: 54 PDRVKYLGPFSGEAPSYLTGEKPGDYGWDTAGLSADPETFAKNRELEVIHCRWAILERLG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L G E VW++VG LDYLG P L A Q ++ I CQ +LM
Sbjct: 114 CVFPELLSRNGV-KFGEAVWFKVGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 170
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 33 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 150
Query: 235 ALLM 238
++M
Sbjct: 151 VVVM 154
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ S+ K++A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 35 RVTMRKSATKKSVA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 92
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 93 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 151
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 152 LGNPSLIHA--QSILAIWACQVILM 174
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 40 KSVAKSKAVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 99
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 100 RELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 156
Query: 222 AGSQGVIVIAICQALLM 238
+Q ++ I Q +LM
Sbjct: 157 VHAQSILAIWATQVILM 173
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 48 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 164
Query: 234 QALLM 238
Q +LM
Sbjct: 165 QVVLM 169
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ SP EL+ N + ++ A + + S WYG +R ++L P
Sbjct: 11 PSFAGKAVKLSPAPRELMGNGRVSMRRTA-----------KPTPSGSPWYGPDRVKYLSP 59
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L
Sbjct: 60 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 120 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 167
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 84/151 (55%), Gaps = 15/151 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 42 RKATTKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 89
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 90 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 148
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 149 EGGLDYLGNPSLVHA--QSILAIWACQVILM 177
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 94/170 (55%), Gaps = 13/170 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ SP +Q T + +++ ++K + S WYG +R +LGP+
Sbjct: 11 PSFAGKAVKFSPSTPEIQG----TGRVSMRKTTK------PVPSGSPWYGPDRVLYLGPL 60
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 121 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 167
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 84/151 (55%), Gaps = 15/151 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 42 RKAATKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 89
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 90 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 148
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 149 EGGLDYLGNPSLVHA--QSILAIWACQVILM 177
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 94/170 (55%), Gaps = 13/170 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ SP +Q T + +++ ++K + S WYG +R +LGP+
Sbjct: 11 PSFAGKAVKFSPSTPEIQG----TGRVSMRKTTK------PVPSGSPWYGPDRVLYLGPL 60
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 121 GV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 167
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 34 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 93
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 94 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 151
Query: 235 ALLM 238
++M
Sbjct: 152 VVVM 155
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 14 DSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 74 MLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGSP--QLIHAQSILAIWA 130
Query: 233 CQALLM 238
CQ +LM
Sbjct: 131 CQVILM 136
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLM 238
Q +LM
Sbjct: 164 QVVLM 168
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A KA+ SP + + T + ++ +SK + S WYG +R ++LGP
Sbjct: 11 PALAGKAVKLSPA----ASEVFGTGRVTMRKASK-----PTGPSGSPWYGSDRVKYLGPF 61
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
+ PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 122 GV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWATQVILM 168
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLM 238
Q +LM
Sbjct: 164 QVVLM 168
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 44 ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 104 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILA 160
Query: 230 IAICQALLM 238
I Q +LM
Sbjct: 161 IWATQVILM 169
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 153
Query: 222 AGSQGVIVIAICQALLM 238
+Q ++ I Q +LM
Sbjct: 154 VHAQSILAIWASQVILM 170
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAM 105
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G L YLG P L A Q ++ I C
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKKGSQIFSEGGLQYLGNPSLVHA--QSILAIWAC 162
Query: 234 QALLM 238
Q +LM
Sbjct: 163 QVVLM 167
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTTTKSKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 152
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 153 A--QSILAIWATQVILM 167
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K++ + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KSVGKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 155 -QSILAIWAVQVVLM 168
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 WYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + P++L G E +W++ G Q LDYLG L L +Q ++ CQ
Sbjct: 97 GALGCVTPKLLSKNGV-QFSEALWFKAGAQIFQEGGLDYLG--NLSLVHAQNIVATLACQ 153
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLM 238
Q +LM
Sbjct: 165 QVILM 169
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 40 KPAASGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 100 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSI 156
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 157 LAIWACQVVLM 167
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 56 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 115
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 116 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 172
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 173 ACQVILM 179
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 54 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 113
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 114 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 170
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 171 ACQVILM 177
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLM 238
Q +LM
Sbjct: 165 QVILM 169
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLM 238
Q +LM
Sbjct: 165 QVILM 169
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 83/140 (59%), Gaps = 5/140 (3%)
Query: 73 VKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
+ ++A L QN ++ +K A Q + R A ES+WYG +RP++LGP
Sbjct: 9 ISSLAGQTLLRPQQNELV-SKMGASQARITMRRTVRSA-PESIWYGPDRPKYLGPFSEQT 66
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTG-VK 125
Query: 193 LVEPVWWRVG--YSKLQGET 210
E VW++ G YS+ + T
Sbjct: 126 FGEAVWFKAGRRYSRREAST 145
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RW
Sbjct: 51 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 110
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 111 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 167
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 168 ACQVILM 174
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 75/124 (60%), Gaps = 3/124 (2%)
Query: 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+WYG +RP++LGP + PSYL GE GDYG+D AGLS DP F + E++HARWAML
Sbjct: 50 IWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAML 109
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G LDYLG P L A Q ++ I Q
Sbjct: 110 GALGCVTPELLAKSGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWASQ 166
Query: 235 ALLM 238
+LM
Sbjct: 167 VILM 170
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 35 KTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 94
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L
Sbjct: 95 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NL 151
Query: 222 AGSQGVIVIAICQALLM 238
+Q ++ I Q +LM
Sbjct: 152 VHAQSILAIWASQVILM 168
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 39 RKATTKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 86
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 87 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 145
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 146 EGGLDYLGNPSLVHA--QSILAIWACQVILM 174
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLM 238
Q +LM
Sbjct: 164 QVVLM 168
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 APSGSQWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILA 159
Query: 230 IAICQALLM 238
I Q +LM
Sbjct: 160 IWAVQVILM 168
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 54 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 113
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 114 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 170
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 171 ACQVILM 177
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 51 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 110
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 111 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 167
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 168 ACQVILM 174
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-EFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 155 -QSILAIWATQVILM 168
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 39 RKATTKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 86
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 87 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 145
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 146 EGGLDYLGNPSLVHA--QSILAIWACQVILM 174
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ SS K A + + S WYG +R +LGP + PS+LTGE PGDYG+D AGLS
Sbjct: 38 RVTMRKSSTKKVSA--SASTSPWYGPDRVLYLGPFSGEPPSHLTGEFPGDYGWDTAGLSA 95
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 96 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDY 154
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 155 LGNPSLVHA--QSILAIWACQVILM 177
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 83/151 (54%), Gaps = 15/151 (9%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R TKK ++ S+ S WYG +R +LGP + PSYLTGE PGDYG+D
Sbjct: 39 RKATTKKVSVSAST------------SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWD 86
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 87 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 145
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 146 EGGLDYLGNPSLVHA--QSILAIWACQVILM 174
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 51 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 110
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 111 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 167
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 168 ACQVILM 174
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSY TGE PGDYG+D AGLS DP F K
Sbjct: 36 KTASKTVTSGSPWYGPDRVKYLGPFSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 96 LEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 153
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 154 -QSILAIWATQVILM 167
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 56 SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAM 115
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 116 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWAC 172
Query: 234 QALLM 238
Q +LM
Sbjct: 173 QVILM 177
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 15 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 74
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 75 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 131
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 132 LAIWAVQVILM 142
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 90/165 (54%), Gaps = 12/165 (7%)
Query: 74 KAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYP 133
KAI SP + + + +KA + S + S WYG +R ++LGP + P
Sbjct: 16 KAIKLSPSTQDIGVGRVTMRKATTKKS---------VPSGSPWYGPDRVKYLGPFSGEAP 66
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193
SYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KF 125
Query: 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAVQVILM 168
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 15 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 74
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 75 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 131
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 132 LAIWAVQVILM 142
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 52 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 111
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L E VW++ G L+YLG +L +Q +I Q
Sbjct: 112 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 169
Query: 235 ALLM 238
++M
Sbjct: 170 VVVM 173
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 30 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 89
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 90 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 146
Query: 234 QALLM 238
Q +LM
Sbjct: 147 QVILM 151
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 98/177 (55%), Gaps = 20/177 (11%)
Query: 65 FSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARN---ESLWYGEER 121
SA+ F A +A+A KA + + +A QA+ ES +YG R
Sbjct: 1 MSAVAFRAQRAVA---------------AKAGRKTTVSVQARRTQAKKAVPESPFYGPNR 45
Query: 122 PRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +LG + + P+YL GE PGDYG+D AGLS DP F++Y E++HARWA+LGALG +V
Sbjct: 46 PLFLGGLSGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGCVV 105
Query: 182 PEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
PE+L G + VW++VG + L+YLG +L +Q ++ + Q +LM
Sbjct: 106 PELLARNGVAMPADGVWFKVGAEIFKEGGLNYLG--NENLVHAQSIVATLLVQLVLM 160
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 155 -QSILAIWATQVILM 168
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 15 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 74
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 75 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 131
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 132 LAIWAVQVILM 142
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 15 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 74
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 75 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 131
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 132 LAIWAVQVILM 142
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 84 SPWYGPDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 143
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 144 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 200
Query: 234 QALLM 238
Q +LM
Sbjct: 201 QVVLM 205
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 49 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 108
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I
Sbjct: 109 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWAT 165
Query: 234 QALLM 238
Q LLM
Sbjct: 166 QVLLM 170
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 53 SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 112
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 113 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAC 169
Query: 234 QALLM 238
Q +LM
Sbjct: 170 QVILM 174
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 5 SPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 64
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 65 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWAT 121
Query: 234 QALLM 238
Q LLM
Sbjct: 122 QVLLM 126
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KTIAKPVSSGSPWYGADRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG L
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSDGGLDYLG--NSSLVH 153
Query: 224 SQGVIVIAICQALLM 238
+Q ++ I Q +LM
Sbjct: 154 AQSILAIWATQVVLM 168
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 13 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 72
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 73 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 129
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 130 LAIWAVQVILM 140
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 13 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 72
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 73 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 129
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 130 LAIWAVQVILM 140
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 15 KVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 74
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 75 HSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSI 131
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 132 LAIWAVQVILM 142
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RW
Sbjct: 35 STSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 94
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 95 AMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIW 151
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 152 ACQVILM 158
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAT 162
Query: 234 QALLM 238
Q +LM
Sbjct: 163 QVVLM 167
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 46 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 105
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 162
Query: 234 QALLM 238
Q +LM
Sbjct: 163 QVILM 167
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
MLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 104 MLGALGCVFPEILCKNG-LKFGEAVWFKAGPQIFFEGGLDYLGHPNL 149
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 61 GVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEE 120
G F+ +++K N LG + + + ++ S+ K++ + + S WYG +
Sbjct: 1 GSCAFAGGQISSLKPHTNQLLG--VGAGVHGESRVTMRKSATKKSVV--SASPSPWYGPD 56
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG +
Sbjct: 57 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 116
Query: 181 VPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
PE+L G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 117 FPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 171
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLM 238
Q +LM
Sbjct: 164 QVVLM 168
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 46 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 LGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAT 162
Query: 234 QALLM 238
Q +LM
Sbjct: 163 QVVLM 167
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 43 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 102
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 103 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 159
Query: 234 QALLM 238
Q +LM
Sbjct: 160 QVILM 164
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 82/145 (56%), Gaps = 13/145 (8%)
Query: 73 VKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
VK +SP EL N + +K+A + S + S WYG +R ++LGP +
Sbjct: 18 VKLTPSSP--ELFGNSRVTMRKSATKSVS----------SGSPWYGPDRVKYLGPFSGEP 65
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-K 124
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E VW++ G LDYLG P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNP 149
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 43 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 102
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 103 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 159
Query: 234 QALLM 238
Q +LM
Sbjct: 160 QVILM 164
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK 153
+ ++ S+ K+ A + + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS
Sbjct: 35 RVTMRKSAAKKSFA--SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 92
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
DP F K E++H+RWAMLGALG + PE+L G E VW++ G LD+
Sbjct: 93 DPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDH 151
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 152 LGNPSLIHA--QSILAIWACQVILM 174
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 48 SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLM 238
Q +LM
Sbjct: 165 QVILM 169
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 45 ASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 104
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 105 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 161
Query: 230 IAICQALLM 238
I Q +LM
Sbjct: 162 IWATQVVLM 170
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 14 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 73
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 74 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 130
Query: 234 QALLM 238
Q +LM
Sbjct: 131 QVILM 135
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWGC 163
Query: 234 QALLM 238
Q +LM
Sbjct: 164 QVVLM 168
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 31 KSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 90
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 91 RELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 149
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 150 A--QSILAIWAVQVVLM 164
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 49 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 108
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 109 LGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWAT 165
Query: 234 QALLM 238
Q +LM
Sbjct: 166 QVILM 170
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAM
Sbjct: 26 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 85
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 86 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPSLVHA--QSILAIWAT 142
Query: 234 QALLM 238
Q +LM
Sbjct: 143 QVILM 147
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R ++LGP + PSYLTGE GDYG+D AGLS DP F K
Sbjct: 5 KTAAKPKPAASGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKN 64
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++HARWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 65 RELEVIHARWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 123
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 124 A--QSILAIWATQVILM 138
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 96 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 152
Query: 235 ALLM 238
+LM
Sbjct: 153 VILM 156
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKNGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 83/152 (54%), Gaps = 13/152 (8%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ +P EL N + +K A SS S WYG +R ++LGP
Sbjct: 11 PSLAGKAVKVAPSSSELFGNGRISMRKTAKPVSSG-----------SPWYGPDRVKYLGP 59
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 60 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 119
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
G E VW++ G LDYLG P L
Sbjct: 120 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 150
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 75/135 (55%), Gaps = 4/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + R +YG R +LGP PSYL GE PGDYG+D AGLS DP F +Y
Sbjct: 24 KGTKQVTRAAIEFYGPNRAGYLGPFTKS-PSYLNGEYPGDYGWDTAGLSADPETFARYRE 82
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++HARWAMLGALG + PE+L G E VWW+ G LDYLG P L A
Sbjct: 83 IEVIHARWAMLGALGCVTPELLAKNGV-SFGEAVWWKAGSQIFAPGGLDYLGNPSLIHA- 140
Query: 224 SQGVIVIAICQALLM 238
Q +I I Q LLM
Sbjct: 141 -QSIIAIVFSQVLLM 154
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG L PE+L G E VW++ G LDYLG P L A Q ++ Q
Sbjct: 97 GALGCLTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATLAVQ 153
Query: 235 ALLM 238
+LM
Sbjct: 154 VILM 157
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE GDYG+D AGLS DP F KY E++HARWAML
Sbjct: 29 WYGPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAML 88
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G Q L+YLG +L +Q ++ Q
Sbjct: 89 GALGCITPELLAKNGV-PFGEAVWFKAGAQIFQDGGLNYLG--NENLVHAQSILATLAVQ 145
Query: 235 ALLM 238
LLM
Sbjct: 146 VLLM 149
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P YLTGE PGDYG+D AGLS DP F +Y E++HARWAML
Sbjct: 28 WYGPDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAML 87
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG +VPE+L G VW++ G + + L+YLG P +L +Q ++ Q
Sbjct: 88 GALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNP--NLIHAQSILATLAFQ 145
Query: 235 ALLM 238
++M
Sbjct: 146 VVVM 149
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG ER ++LGP + PSYLTGE PGDYG+D AGLS DP F + +++H RWAM
Sbjct: 48 SPWYGSERVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLM 238
Q +LM
Sbjct: 165 QVILM 169
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 87/150 (58%), Gaps = 8/150 (5%)
Query: 94 KAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDV 148
K+A++ S + R AR WYG +RP++LGP D P+YLTGE PGDYG+D
Sbjct: 3 KSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDT 62
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 63 AGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGSQIFAE 121
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG +L +Q +I Q ++M
Sbjct: 122 GGLNYLG--NENLVHAQSIIATLAFQVVVM 149
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 22 KTVAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 81
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 82 RELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 140
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 141 A--QSILAIWATQVVLM 155
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R ++LGP + PSYL GE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGPDRVKYLGPFSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 230 IAICQALLM 238
I Q +LM
Sbjct: 160 IWASQVVLM 168
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG PE+L G E VW++ G LDYLG P L A Q ++ + Q
Sbjct: 96 GALGCQTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QNIVATSAVQ 152
Query: 235 ALLM 238
+LM
Sbjct: 153 VILM 156
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 155 -QSILAIWATQVILM 168
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 88/155 (56%), Gaps = 8/155 (5%)
Query: 89 MLETKKAALQDSSKFKALARQAR----NESLWYGEERPRWLGPIPY-DYPSYLTGELPGD 143
M K+A++ S + R AR WYG +RP++LGP D P+YLTGE PGD
Sbjct: 1 MAAIMKSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGD 60
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
YG+D AGLS DP F++Y E++HARWAMLGALG + PE+L G E VW++ G
Sbjct: 61 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGA 119
Query: 204 SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG +L +Q +I Q ++M
Sbjct: 120 QIFAEGGLNYLG--NENLIHAQSIIATLAFQVVVM 152
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 230 IAICQALLM 238
I Q +LM
Sbjct: 160 IWAVQVVLM 168
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
YG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGA
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 63
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQAL 236
LG + PE+L G E VW++ G LDYLG P +L +Q ++ I Q +
Sbjct: 64 LGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWAVQVV 120
Query: 237 LM 238
LM
Sbjct: 121 LM 122
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA- 154
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 155 -QSILAIWATQVILM 168
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
Query: 91 ETKKAALQDSSKFKALARQARN--ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
+TK ++ +L N LWYG +R ++LGP PSY TGE PGDYG+D
Sbjct: 20 QTKSSSFNPLRDVVSLGSHKYNMGNYLWYGPDRVKYLGPFSVQTPSYPTGEFPGDYGWDT 79
Query: 149 AGLSKDP-MAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP AF K E+++ RWAMLGA G + PEVL EPVW++ G
Sbjct: 80 AGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFS 139
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ + Q +LM
Sbjct: 140 EGGLDYLGNP--NLVHAQSILAVLGFQVILM 168
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S WYG +RP +LG + + PSYLTGE PGDYG+D AG S DP F +Y E++HARWA
Sbjct: 39 DSAWYGPDRPLFLGSLSGEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWA 98
Query: 173 MLGALGALVPEVLDMVGA-FHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
+LGALG + PE+L G F +W++ G + L+YLG P +L +Q ++
Sbjct: 99 LLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNP--NLIHAQSILATL 156
Query: 232 ICQALLM 238
Q ++M
Sbjct: 157 AVQVIVM 163
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + R+ S WYG +R +LGP+ D PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTGGKPVRSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPETFSKNRE 93
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 94 LEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 148
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHS 102
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILA 159
Query: 230 IAICQALLM 238
I Q +LM
Sbjct: 160 IWAVQVVLM 168
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 108 RQARNESL-WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
RQ ++ +YG +R +LGP D PSYL GE PGDYG+D AGLS DP F +Y E+
Sbjct: 27 RQVTRAAIEFYGPDRATFLGPF-TDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIEV 85
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+HARWAMLGALG + PE+L G E VW++ G + L+YLG L +Q
Sbjct: 86 IHARWAMLGALGCVTPELLAKNGV-SFGEAVWFKAGAQIFGSDGLNYLG--NSSLVHAQS 142
Query: 227 VIVIAICQALLM 238
+I CQ +LM
Sbjct: 143 IIATLACQVILM 154
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Query: 104 KALAR-QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
K +A+ + + S WYG +R ++LGP + PSYL+GE PGDYG+D AGLS DP F K
Sbjct: 3 KTVAKPKTVSSSPWYGPDRVKYLGPFSGEAPSYLSGEFPGDYGWDTAGLSADPETFAKNR 62
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLA 222
E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 63 ELEVIHCRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA 121
Query: 223 GSQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 122 --QSILAIWATQVILM 135
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 69 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGP 127
P A KA+ +P EL N + +K + A + S WYG +R ++LGP
Sbjct: 11 PSFAGKAVKVAPSSSELFGNGRISMRKTGKKP---------VASSGSPWYGPDRVKYLGP 61
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L
Sbjct: 62 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 121
Query: 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
G E VW++ G LDYLG P L
Sbjct: 122 NGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSL 152
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE GDYG+D AGLS DP F K E++HARWAM
Sbjct: 48 SPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLM 238
Q +LM
Sbjct: 165 QVVLM 169
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG +R +LGP + PSYL GE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 31 FYGPDRAGFLGPF-TESPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLG 89
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G + L+YLG P L A Q +I CQ
Sbjct: 90 ALGCVTPELLAKNGV-SFGEAVWFKAGAQIFGSDGLNYLGNPSLVHA--QSIIATLACQV 146
Query: 236 LLM 238
+LM
Sbjct: 147 ILM 149
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG R +WLGP P YLTGE GDYG+D AGLS DP F++Y E++HARWAMLG
Sbjct: 39 FYGPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLG 98
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G Q L+YLG L A Q ++ CQ
Sbjct: 99 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNSSLIHA--QSILATLACQV 155
Query: 236 LLM 238
+LM
Sbjct: 156 ILM 158
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 37 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G Q L+YLG P L A Q ++ Q
Sbjct: 97 GALGIVTPELLQKNGV-QFGEAVWFKAGAQIFQEGGLNYLGNPSLIHA--QNIVATLAVQ 153
Query: 235 ALLM 238
+L+
Sbjct: 154 VVLL 157
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ A + S W+G + ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 4 KVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 63
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 64 HSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 120
Query: 228 IVIAICQALLM 238
+ I Q +LM
Sbjct: 121 LAIWATQVILM 131
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 12 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 71
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G L+YLG +L +Q +I Q
Sbjct: 72 GALGCITPELLAKNG-IPFGEAVWFKAGSQIFAEGGLNYLG--NENLVHAQSIIATLAFQ 128
Query: 235 ALLM 238
++M
Sbjct: 129 VVVM 132
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 47 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E V ++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVGFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWAC 163
Query: 234 QALLM 238
Q +LM
Sbjct: 164 QVVLM 168
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+YLTGE PGDYG+D AGLS DP FQ+Y E++HARWAML
Sbjct: 28 FYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAML 87
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G Q L+YLG P L A Q ++ Q
Sbjct: 88 GALGIVTPELLAKNGV-PFGEAVWFKAGAQIFQEGGLNYLGNPSLIHA--QNIVATLAVQ 144
Query: 235 ALLM 238
+L+
Sbjct: 145 VILL 148
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 116 WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
WYG +RP++LGP D P+YLTGE PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 32 WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQ 234
GALG + PE+L G E VW++ G L+YLG +L +Q +I Q
Sbjct: 92 GALGCITPELLAKNG-IPFGEAVWFKAGAQIFAEGGLNYLG--NENLIHAQSIIATLAFQ 148
Query: 235 ALLM 238
++M
Sbjct: 149 VVVM 152
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAG 150
T A Q + KA + R +YG +R ++LGP PSYL GE PGDYG+D AG
Sbjct: 12 TGITARQSTKSAKARKQVTRASVEFYGPDRAKFLGPFSEGAVPSYLKGEFPGDYGWDTAG 71
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE-PVWWRVGYSKLQGE 209
LS DP F +Y E++H+RWA+LGALG L PE L GA E VW++ G S +
Sbjct: 72 LSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDD 131
Query: 210 TLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG P L +Q ++ + Q +L+
Sbjct: 132 GLNYLGNP--QLIHAQSIVATLLAQIVLV 158
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
+ + S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+
Sbjct: 48 SESPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHS 107
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIV 229
RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 108 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILA 164
Query: 230 IAICQALLM 238
I Q +LM
Sbjct: 165 IWASQVILM 173
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 17 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 76
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E W++ G LDYLG L
Sbjct: 77 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEACWFKAGSQIFSEGGLDYLG--NQSLIH 133
Query: 224 SQGVIVIAICQALLM 238
+Q ++ I Q +LM
Sbjct: 134 AQSILAIWATQVILM 148
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 17 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 76
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E W++ G LDYLG L
Sbjct: 77 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEASWFKAGSQIFSEGGLDYLG--NQSLIH 133
Query: 224 SQGVIVIAICQALLM 238
+Q ++ I Q +LM
Sbjct: 134 AQSILAIWATQVILM 148
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 67/107 (62%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 39 TAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 98
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
RWAMLG G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 99 CRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 145
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE GDYG+D AGLS DP F K E++H RWAM
Sbjct: 47 SPWYGADRVLYLGPLSGEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I C
Sbjct: 107 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSILAIWGC 163
Query: 234 QALLM 238
Q + M
Sbjct: 164 QVVFM 168
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 110 ARNESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 43 ASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 102
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
+RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 103 SRWAMLGALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSIL 159
Query: 229 VIAICQALLM 238
I Q +LM
Sbjct: 160 AIWAVQVVLM 169
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG ER ++LGP + PSYLTG+ PGDYG+D AGLS P F + E++H RWAM
Sbjct: 48 SPWYGSERVKYLGPFSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAIC 233
LGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWAT 164
Query: 234 QALLM 238
Q +LM
Sbjct: 165 QVILM 169
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA+A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 37 KAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNG-VKFGEAVWFKAG 134
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSA-PESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGV-KFGEAVWFK 133
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 77/130 (59%), Gaps = 4/130 (3%)
Query: 110 ARNESLWYGEERPRWLGPIP-YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H
Sbjct: 40 ASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 99
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
+RWAMLG LG + PE+L G E VW++ G LDYLG P L A Q ++
Sbjct: 100 SRWAMLGGLGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA--QSIL 156
Query: 229 VIAICQALLM 238
I Q +LM
Sbjct: 157 AIWAVQVVLM 166
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 56/66 (84%)
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
ML ALG +VPE+LD+ G H VEPVWW+VGY+KLQG+ LDYLGIPG +AG QGV+VIAI
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 60
Query: 233 CQALLM 238
CQALLM
Sbjct: 61 CQALLM 66
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 76/144 (52%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ + L D A S WYG R +LGP+ P +L GELPGDYGFD
Sbjct: 76 NIITFHQRVLSDLGGVAMFAATGEKLSDWYGPNRKLFLGPLSDGAPEHLKGELPGDYGFD 135
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
V GL+ P ++Y EI++ RWAMLG +G +VPE+L EPVW++ G +
Sbjct: 136 VLGLATQPTRLERYRQGEIINGRWAMLGIVGCIVPELLARNYGVPFPEPVWFKTGATVFS 195
Query: 208 GETLDYLGIPGLHLAGSQGVIVIA 231
E L+YLG P L A S I++
Sbjct: 196 EEGLNYLGNPSLIHAKSIAAILVT 219
>gi|222641394|gb|EEE69526.1| hypothetical protein OsJ_28989 [Oryza sativa Japonica Group]
Length = 225
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 38 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 97
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
RWAMLGALG + PE+L G E VW++ G LQG
Sbjct: 98 RWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQVLQGR 136
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
LTGE PGDYG+D AGLS DP F+KY E++HARWAMLGALG + PE+L G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
VW+R G + LDYLG P L A S G IVI+ Q +LM
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVIS--QVILM 101
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 114 SLW-YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
S W +G ER +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 19 STWCFGFERYGYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 78
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAI 232
MLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I
Sbjct: 79 MLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWA 135
Query: 233 CQALLM 238
Q +LM
Sbjct: 136 TQVILM 141
>gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia faba]
Length = 136
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 43 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 173 MLGALGALVPEVLDMVG 189
MLGALG PE+L+ G
Sbjct: 103 MLGALGCTFPELLEKNG 119
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
+YG +R ++LGP + YLTGE PGDYG+D AGLS DP F +Y E++HARWAMLG
Sbjct: 29 FYGPDRAKFLGPFTPE-SDYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLG 87
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
ALG + PE+L G E VW++ G Q L+YLG +L +Q ++ Q
Sbjct: 88 ALGCITPELLAKNGV-PFGEAVWFKAGAQIFQDGGLNYLG--NENLVHAQSILATLAVQV 144
Query: 236 LLM 238
+LM
Sbjct: 145 ILM 147
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 55/77 (71%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H RWA
Sbjct: 10 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 69
Query: 173 MLGALGALVPEVLDMVG 189
MLGALG + PE+L G
Sbjct: 70 MLGALGCVFPEILSKNG 86
>gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 118
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWA
Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 173 MLGALGALVPEVL 185
MLGALG + PE+L
Sbjct: 104 MLGALGCVFPEIL 116
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYGE R +L G + D P YLTGE+PGDYGFD GLSK P F KY +E++HARWA
Sbjct: 58 WYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWA 117
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 118 MLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFG 160
>gi|16225450|gb|AAL15892.1|AF417304_1 putative chlorophyll-A-B-binding protein [Castanea sativa]
Length = 120
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 54/73 (73%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WYG +RP++LGP PSYLTGE P DYG+D AGLS DP F K E++H+RWA
Sbjct: 46 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPEDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 173 MLGALGALVPEVL 185
MLGALG + PE+L
Sbjct: 106 MLGALGCVFPEIL 118
>gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 155
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WYG +RP+WLGP + PSYLTGE PGDYG+D AGLS +KY E++H RW MLG
Sbjct: 62 WYGPDRPKWLGPFFQNTPSYLTGEFPGDYGWDTAGLSAT-GDLRKYRTIEVIHGRWPMLG 120
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYL 214
ALG LVPE++ + EPVW++ G LDYL
Sbjct: 121 ALGCLVPELIKG----DIAEPVWFKAGAQIFSEGGLDYL 155
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ERP WLGP PSYL G L GDYG+D +GLS P A + E+LHARWAMLGALG+
Sbjct: 24 ERPLWLGPYTGATPSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALGS 83
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+PE+L L+EPVW++ G LDYLG P L +Q ++ I Q LLM
Sbjct: 84 LLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNP--SLVHAQSILAILGFQVLLM 140
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 112 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 63 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 122
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 123 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 173
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + AR+ S WYG +R +LGP+ PSYLTGE PGDYG+D GLS DP F K
Sbjct: 34 KTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H RWA+ LG + PE+L G E VW++ G L + G P L
Sbjct: 94 RELEVIHCRWAIAVGLGCVFPELLARNGV-KFGEGVWFKAGSQIFSEGGLSHPGNPSLVH 152
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I CQ +LM
Sbjct: 153 A--QSILAIWACQVVLM 167
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 112 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 63 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 122
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 123 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 173
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 112 NESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
NE L WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE+
Sbjct: 64 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFEL 123
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 124 IHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 174
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 58/93 (62%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
A R ++ LWYG +R +LGP PSYL GE PGDYG+D AGLS DP AF +
Sbjct: 37 ATGRITMSKELWYGPDRVNYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRAL 96
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197
E++H RWAMLGALG + PEVL+ H +P
Sbjct: 97 EVIHGRWAMLGALGCITPEVLEKWVRVHFKDPC 129
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 104 KALARQARNESLWYGEERPRWLGPI--PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K++A + +YG RP W GP P D P YL GE PGDYG D+ L + P + K
Sbjct: 1 KSVAPSQDTRTAYYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAKL 60
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
+ E+++ RWAMLG G LVPE+++ EPVW++ G +DYLG+PG
Sbjct: 61 RSQELMNGRWAMLGITGCLVPELINS-NPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFIN 119
Query: 222 AGSQGVIVIAICQALLM 238
A S ++ + + QALLM
Sbjct: 120 AHS--LVAVIVVQALLM 134
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 82/153 (53%), Gaps = 18/153 (11%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
QN +++ K A Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG
Sbjct: 22 QNELVK-KVGASQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYG 79
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+D AGLS DP F AMLGALG + PE+L G E VW++ G
Sbjct: 80 WDTAGLSADPETF-------------AMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQI 125
Query: 206 LQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 126 FSEGGLDYLGNP--NLIHAQSILAIWASQVVLM 156
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 66/105 (62%), Gaps = 3/105 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D +GLSK P F KY FE++HARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
MLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 175
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 71/109 (65%), Gaps = 5/109 (4%)
Query: 112 NESL--WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
NE L WYG +R +L G + D P+YLTGE+PGDYG+D GLSK P F +Y +E+
Sbjct: 42 NEELAKWYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYEL 101
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+HARWAMLGA G ++PE + GA E VWW+ G L+G+++ Y G
Sbjct: 102 IHARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFG 150
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F+KY FE++HARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 174
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F+KY FE++HARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 174
>gi|93359558|gb|ABF13305.1| chloroplast chlorophyll a/b binding protein [Phaseolus vulgaris]
Length = 134
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P PSYL GE PGDYG+D AGLS DP AF K E++H RWAMLGALG + PEVL+
Sbjct: 1 PFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 60
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
EPVW++ G LDYLG P +L +Q ++ + Q +LM
Sbjct: 61 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLM 110
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
MLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 175
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA GA++PE + GA E VW++ G L G TL+Y G
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA GA++PE + GA E VW++ G L G TL+Y G
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 116 WYGEERPRWLGPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
+YG R +WLGP + P+Y + PGDYG+D AGLS DP F++Y E++HARWAML
Sbjct: 40 FYGPNRAKWLGPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 99
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
GALG + PE+L G E VW++ G LDYLG P L
Sbjct: 100 GALGCITPELLAKSGT-QFGEAVWFKAGAQIFSEGGLDYLGNPSL 143
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 124 WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPE 183
+LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE
Sbjct: 1 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 60
Query: 184 VLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+L G E VW++ G LDYLG P L A Q ++ I Q +LM
Sbjct: 61 LLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHA--QSILAIWAVQVVLM 112
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
MLGA G ++PE + GA E VW++ G L G TL+Y G P
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 177
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 64 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 123
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA GA++PE + GA E VW++ G L G TL+Y G
Sbjct: 124 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 166
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA GA++PE + GA E VW++ G L G TL Y G
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFG 167
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 6/125 (4%)
Query: 116 WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YLTGE+PGDYG+D GLSK P F +Y +E++HARWA
Sbjct: 6 WYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWA 65
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG--IPGLHLAGSQGVIVI 230
MLGA G ++PE + GA E VWW+ G L+G+++ Y G +P L+LA + VI
Sbjct: 66 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVP-LNLAAAVIAEVI 124
Query: 231 AICQA 235
+ A
Sbjct: 125 LVGGA 129
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P+YLTGE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 174
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 65 WYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA GA++PE + GA E VW++ G L G TL Y G
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFG 167
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
P + PSYLTGE PGDYG+D AGLS DP F K E++H+ WAMLGALG + PE+L
Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS 60
Query: 187 MVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G E VW++ G LDYLG P L A Q ++ I CQ +LM
Sbjct: 61 RNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLM 109
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YLTGE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 74 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 133
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G +VPE + GA E VW++ G L G TL+Y G
Sbjct: 134 MLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFG 176
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA+ E VW++ G L G TL Y G
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GL K P F KY FE++HARWA
Sbjct: 68 WYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 127
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 128 MLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFG 170
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA+ E VW++ G L G TL Y G
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
KA + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F +
Sbjct: 37 KASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
E++H+RWAMLGALG + PE+L G E VW + ++ LQ
Sbjct: 97 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWVQGWFTDLQ 139
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY FE++HARWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 172
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 64/108 (59%), Gaps = 11/108 (10%)
Query: 119 EERPRWLGP-----IPY------DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
EE +W GP +P D P YL GE+PGDYG+D GLSK P F KY +E++
Sbjct: 80 EELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELI 139
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G
Sbjct: 140 HARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|193872610|gb|ACF23033.1| ST140, partial [Eutrema halophilum]
Length = 141
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PG+YG+D AGLS DP F + E++H+RWAM
Sbjct: 48 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGNYGWDTAGLSADPETFARNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVG 202
LGALG + PE+L G + VW++ G
Sbjct: 108 LGALGCVFPELLARNGV-KFGKAVWFKAG 135
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 144
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA+ E VW++ G L G TL Y G
Sbjct: 145 MLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 60 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWA 119
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA+ E VW++ G L G TL Y G
Sbjct: 120 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 162
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK+P F +Y +E++HARWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L+G TL+Y G
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFG 167
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 11/109 (10%)
Query: 118 GEERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
G+E +W GP +P + P YL GE+PGDYG+D GLSK P F KY +E+
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 11/109 (10%)
Query: 118 GEERPRWLGP-----IP------YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
G+E +W GP +P + P YL GE+PGDYG+D GLSK P F KY +E+
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAM
Sbjct: 17 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 76
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWR 200
LGALG + PE+L G E VW++
Sbjct: 77 LGALGCVFPELLSRNGV-KFGEAVWFK 102
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 104 KALARQARNESLWYGEERPRWLGPI--PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K++A + +YG RP W GP P D P YL GE PGDYG D+ L++ P + +
Sbjct: 13 KSVAPDQDARAPYYGPNRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARL 72
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E+++ RWAMLG G L PE+++ + EPVW+ G +DYLG+PG
Sbjct: 73 RTQELMNGRWAMLGITGCLTPELIN-SNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFIN 131
Query: 222 AGSQGVIVIAICQALLM 238
A S + + + QALLM
Sbjct: 132 AHS--LFAVIVVQALLM 146
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 167
>gi|169261108|gb|ACA52202.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 118
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 54/76 (71%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 36 SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 95
Query: 174 LGALGALVPEVLDMVG 189
LGALG + PE+L G
Sbjct: 96 LGALGCVFPELLARNG 111
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+ R ++LGP ++PSYLTGE PGDYG+D AGLS P F K E++H+R AM ALG
Sbjct: 56 DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALG 115
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ PE+L ++G E VW++ G LDYLG P L +Q ++ I + +LM
Sbjct: 116 CIFPELLSVMGQ-GFGEAVWFKAGAQIFSEGGLDYLGNP--SLVHAQSILAIWTTKVILM 172
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 68 WYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWA 127
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 128 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 170
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK+P F +Y +E++HARWA
Sbjct: 65 WYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWA 124
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L+G TL+Y G
Sbjct: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFG 167
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
+ S WYG +R ++LGP + PSYLTGE P G DP F K E++HARW
Sbjct: 46 SSSPWYGPDRVKYLGPFSGEPPSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEVIHARW 105
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231
AMLGALG + PE+L G E VW++ G LDYLG P L A Q ++ I
Sbjct: 106 AMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSILAIW 162
Query: 232 ICQALLM 238
CQ +LM
Sbjct: 163 ACQVILM 169
>gi|169261106|gb|ACA52201.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 119
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 71/117 (60%), Gaps = 11/117 (9%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQA-RNESLWYGEERPRWLGP 127
P A KA+ SP E+L + +K A + A+ A + S WYG +R ++LGP
Sbjct: 13 PAFAGKAVKLSP--EVLTTGGITMRKTAGK--------AKPAVSSGSPWYGPDRVKYLGP 62
Query: 128 IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
+ PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+
Sbjct: 63 FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWL--GPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L G + D P YL GE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 85 WYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWA 144
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA+ E VW++ G L G TL Y G
Sbjct: 145 MLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 187
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 175
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
LTGE PGDYG+D AGLS DP AF K E++H RWAMLGALG + PEVL+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 196 PVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
PVW++ G LDYLG P +L +Q ++ + Q +LM
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLM 101
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 67 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 126
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 127 MLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFG 169
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P+YL GE+PGDYG+D GL K P F KY +E++HARWA
Sbjct: 61 WYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWA 120
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 121 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 163
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 109 QARNESL--WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
A N+ L WYG +R +L D P YL GE+ GDYG+D GL K P F KY
Sbjct: 56 SAANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQA 115
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL Y G
Sbjct: 116 FELIHARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFG 167
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 63/108 (58%), Gaps = 11/108 (10%)
Query: 119 EERPRWLGP-----IPY------DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
EE +W GP +P D P YL GE+PGDYG+D GL + P F KY +E++
Sbjct: 79 EELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELI 138
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
HARWAMLGA G ++PE + GA+ E VW++ G L G TL Y G
Sbjct: 139 HARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG 186
>gi|449527935|ref|XP_004170963.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like, partial [Cucumis sativus]
Length = 117
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 86 QNRMLETKKAALQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
Q L +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PG
Sbjct: 16 QAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 75
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
DYG+D AGLS DP F K E++H+RWAMLGALG +
Sbjct: 76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 113
>gi|212721622|ref|NP_001132387.1| light harvesting complex mesophyll7 [Zea mays]
gi|194694246|gb|ACF81207.1| unknown [Zea mays]
Length = 185
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 53/72 (73%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAM
Sbjct: 48 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107
Query: 174 LGALGALVPEVL 185
LGALG + PE+L
Sbjct: 108 LGALGCVFPELL 119
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PG+YG+D GLSK P F KY +E++HARWA
Sbjct: 68 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWA 127
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 128 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 170
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARWA
Sbjct: 69 WYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 128
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE + GA E VW++ G L G TL Y G
Sbjct: 129 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFG 171
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164
>gi|413933709|gb|AFW68260.1| hypothetical protein ZEAMMB73_510715 [Zea mays]
Length = 144
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
+S+WY +RP++L P SYLTGE PGDYG+D AGLS D F + E++H+ WA
Sbjct: 41 QSIWYDPDRPKYLAPFSEQTSSYLTGEFPGDYGWDTAGLSADHETFARNRELEVIHSWWA 100
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYL 214
MLGALG + PEVL E VW++ G LDYL
Sbjct: 101 MLGALGCVFPEVL-AKNDVKFGEVVWFKAGAQIFSEGGLDYL 141
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+ GDYG+D GL K P F KY FE++HARWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
MLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 10/114 (8%)
Query: 110 ARNESLWYGEERPRWLGPIPY------DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
A+N WYG R +L P D P+YLTG+L GDYG+D GL KDP QKY
Sbjct: 58 AQNLDKWYGPSRVLFL---PSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRA 114
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
FE++HARWAML A G ++PE L GA + W+ G L G TL+Y +P
Sbjct: 115 FELIHARWAMLAAAGMIIPEGLAANGA-DIKGATWFETGAEMLNGGTLNYFAVP 167
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 55/83 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL GE+PGDYG+D GLSK P F KY +E++HARWAMLGA G ++PE + GA
Sbjct: 24 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 83
Query: 193 LVEPVWWRVGYSKLQGETLDYLG 215
E VW++ G L G TL+Y G
Sbjct: 84 GPEAVWFKTGALLLDGNTLNYFG 106
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 55/83 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL GE+PGDYG+D GLSK P F KY +E++HARWAMLGA G ++PE + GA
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 62
Query: 193 LVEPVWWRVGYSKLQGETLDYLG 215
E VW++ G L G TL+Y G
Sbjct: 63 GPEAVWFKTGALLLDGNTLNYFG 85
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
GE+RP W + P++LTGE PGD GFD GL+KDP F K+ + E+ H RWAMLG +
Sbjct: 148 GEKRPTWFPGA--EAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLV 205
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 237
G LVPEV +G L P W+ + LDYLG P +L + V IA+ LL
Sbjct: 206 GCLVPEVFGNLGIAQL--PAWYDAA-TVANTSNLDYLGNP--NLVHASNVSFIALSTLLL 260
Query: 238 M 238
M
Sbjct: 261 M 261
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
GE+RP W + P++LTGE PGD GFD GL+KDP F K + E+ H RWAMLG +
Sbjct: 357 GEKRPTWFPGA--EAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLV 414
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
G LVPEV +G L P W+ G G +LDYLG P L
Sbjct: 415 GCLVPEVFGNLGIAQL--PAWYEAGAVANTG-SLDYLGNPNL 453
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 110 ARNESLWYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
A N WYG +R +L YD P+YL GEL GDYG+D GL KD KY +E+
Sbjct: 43 AVNLDKWYGPDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYEL 102
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
LHARWAML A G L+PE L GA ++ VW+ G L G TL+Y +P
Sbjct: 103 LHARWAMLAAAGILIPEGLQANGA-NIKGGVWFETGAEMLNGGTLNYFAVP 152
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K + + S WYG +R ++LGP + PSYLTGE GLS DP F K
Sbjct: 36 KTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRE 87
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L A
Sbjct: 88 LEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHA- 145
Query: 224 SQGVIVIAICQALLM 238
Q ++ I Q +LM
Sbjct: 146 -QSILAIWATQVILM 159
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L YD P YL GEL GDYG+D GL KDP KY E+LHARWA
Sbjct: 52 WYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 111
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
ML A G L+PE L GA ++ W+ G L G TL+Y +P
Sbjct: 112 MLAAAGILIPEGLQANGA-NIKGGTWFETGAEMLNGGTLNYFAVP 155
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L YD P YL GEL GDYG+D GL KDP KY E+LHARWA
Sbjct: 22 WYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWA 81
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
ML A G L+PE L GA ++ W+ G L G TL+Y +P
Sbjct: 82 MLAAAGILIPEGLQANGA-NIKGGTWFETGAEMLNGGTLNYFAVP 125
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 91 ETKKAALQDSSK-FKALARQARNESLWYGEERPRWL-GPI--PYDYPSYLTGELPGDYGF 146
+ KKAA +K + A A+ WYG R +L G + P D P+YL G L GDYG+
Sbjct: 67 QVKKAASGKRTKGWFGEAGGAQGLDKWYGPSRALFLPGGLLDPSDVPTYLNGTLAGDYGY 126
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D GL KD +KY +E++HARWAML A G ++PE L GA + W+ G L
Sbjct: 127 DPLGLGKDTATVEKYRAYELIHARWAMLAAAGIIIPEGLQANGA-AIKGGTWFETGAEML 185
Query: 207 QGETLDYLGIP 217
G TL+Y +P
Sbjct: 186 NGGTLNYFAVP 196
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 138 GELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197
GE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E V
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAV 59
Query: 198 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
W++ G LDYLG P +L +Q ++ I CQ +LM
Sbjct: 60 WFKAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLM 98
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 23/135 (17%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K ++ + S WYG +R ++LGP + PSYLTGE PGDYG++ AGLS DP F K
Sbjct: 21 KTTTKKVSSGSPWYGPDRVKYLGPFFGEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRE 80
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
E++H+RWAM W++ LDYLG P L A
Sbjct: 81 LEVIHSRWAMFDR---------------------WFKARSQIFSEGGLDYLGNPSLVHA- 118
Query: 224 SQGVIVIAICQALLM 238
Q ++ I CQ +LM
Sbjct: 119 -QSILAIWACQVILM 132
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 130 YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL-DMV 188
+ +P TGE PGDYG+D AGLS DP F++Y E++HAR +LGALG + PE+L D
Sbjct: 70 HQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADED 129
Query: 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G +W++ G + Q L+YLG P L A Q ++ Q +LM
Sbjct: 130 GIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHA--QNIVATLAVQVVLM 177
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFK 59
Query: 201 VGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G LDYLG P L +Q ++ I CQ +LM
Sbjct: 60 AGSQIFSEGGLDYLGNP--SLVHAQSILAIWACQVVLM 95
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW+
Sbjct: 3 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-KFGEAVWF 61
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ G LDYLG P +L +Q ++ I CQ +LM
Sbjct: 62 KAGAQIFSEGGLDYLGNP--NLIHAQSILAIWACQVVLM 98
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 116 WYGEERPRWL--GPIPYD-YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG ER +L G + D P YL GEL GDYG+D GL KD +KY E+LHARWA
Sbjct: 46 WYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWA 105
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
ML A G L+PE L GA + W+ G L G TL+Y +P
Sbjct: 106 MLAAAGILIPEGLQANGA-DIKGGTWFETGAEMLNGGTLNYFAVP 149
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Query: 116 WYGEERPRWLGPI----PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
WYG +RP++L P P D P+Y+ GEL GDYG+D GL + +KY +E+LH RW
Sbjct: 58 WYGPDRPKYL-PTGLLDPADIPAYMNGELAGDYGYDPLGLG-NKGGVEKYRPYEVLHGRW 115
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ-GETLDYLGIP 217
AMLG +G LVPE L G ++ VWW G L TL + GIP
Sbjct: 116 AMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIP 162
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
E PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVW 59
Query: 199 WRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
++ G LDYLG P L +Q ++ + Q +LM
Sbjct: 60 FKAGSQIFSEGGLDYLGNP--SLVHAQSILTVWATQVILM 97
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 62/107 (57%), Gaps = 7/107 (6%)
Query: 116 WYGEERPRWLGPI----PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
WYG +RP++L P P D P+Y+ GEL GDYG+D GL +KY +E+LH RW
Sbjct: 65 WYGPDRPKYL-PTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRW 122
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ-GETLDYLGIP 217
AMLG +G LVPE L G ++ VWW G L TL + GIP
Sbjct: 123 AMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIP 169
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGV-KFGEAVWFKA 59
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G LDYLG P +L +Q ++ I CQ +LM
Sbjct: 60 GAQIFSEGGLDYLGNP--NLVHAQSILAIWACQVVLM 94
>gi|86169487|gb|ABC86983.1| chlorophyll a/b binding protein [Brassica napus]
Length = 75
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G
Sbjct: 5 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV-K 63
Query: 193 LVEPVWWRVG 202
E VW++ G
Sbjct: 64 FGEAVWFKAG 73
>gi|428230868|gb|AFY99056.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 107
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++
Sbjct: 7 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKA 65
Query: 202 GYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
G LDYLG P +L +Q ++ I Q +LM
Sbjct: 66 GSQIFSEGGLDYLGNP--NLVHAQSILAIWASQVVLM 100
>gi|169261096|gb|ACA52196.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 109
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 59 LAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYG 118
+AG S F KA+ SP +L T K ++ ++ + A + S WYG
Sbjct: 6 MAGSSTMSVSSFMG-KAVKLSP-------EVLGTGKVTMRKTAGKTKQTKSASSGSPWYG 57
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR 170
+R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+R
Sbjct: 58 PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 109
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 112 NESLWYGEERPRWL--GPIPYDYPS-YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
N WYG +R +L G + D + L G LPGDYG+D GL+KD KY E+LH
Sbjct: 44 NLDKWYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLH 103
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAML A GA++PE L GA + W+ G + L G TL++ +P +++ +
Sbjct: 104 ARWAMLAAAGAIIPEGLAANGA-DVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLF 162
Query: 229 VIAICQALLM 238
V+ LM
Sbjct: 163 VVVAANVALM 172
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP AF K E++H RWAMLGALG + PEVL EPVW++ G
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ + Q ++M
Sbjct: 61 AQIFTEGGLDYLGNP--NLVHAQSILAVLGFQVVVM 94
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP AF + E++H RWAMLGALG + PEVL EPVW++ G
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ + Q +LM
Sbjct: 61 AQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVVLM 94
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAG 59
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L +Q ++ I CQ +LM
Sbjct: 60 SQIFSEGGLDYLGNP--SLVHAQSILAIWACQVILM 93
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAG 59
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 60 SQIFSEGGLDYLGNPSLIHA--QSILAIWACQVILM 93
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 143 DYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGV-KFGEAVWFKAG 59
Query: 203 YSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 60 SQIFSEGGLDYLGNPTLIHA--QSILAIWACQVILM 93
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
++RP WL + D P+YL G LPGD+GFD GL +DP + + Y E++H+R+AMLG LG
Sbjct: 56 QQRPTWLPGL--DPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
LV ++L + G + P+W+ G K +
Sbjct: 114 ILVTDLLRVAGVNSI--PIWFEAGAVKYE 140
>gi|414881721|tpg|DAA58852.1| TPA: chlorophyll a-b binding protein 2, mRNA [Zea mays]
Length = 311
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 44/71 (61%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K A + A + S WYG +R +LGP+ PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 34 KTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKN 93
Query: 162 FNFEILHARWA 172
E++H RW
Sbjct: 94 RELEVIHCRWG 104
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 141 PGDYGFDVA-GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
PGDYG+D + GLS DP F K E++H+RWAMLGALG + PE+L G E VW+
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWF 59
Query: 200 RVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
+ G LDYLG P L +Q ++ I Q +LM
Sbjct: 60 KAGAQIFSEGGLDYLGNP--SLVHAQSILAIWATQVILM 96
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
E + WL +P P+YL G LPGD GFD GL++DP + Y E+++ARWAMLG G
Sbjct: 44 EAKGEWLPGLPS--PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAG 101
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYS 204
L+PEVL +G + P+W+ G S
Sbjct: 102 MLLPEVLTKIGIIN--APLWYDAGKS 125
>gi|169261112|gb|ACA52204.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera grandiflora]
Length = 103
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
Query: 74 KAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYP 133
KA+ ++P + L+ L + ++ ++ KA A + S WYG +R ++LGP + P
Sbjct: 13 KAVLSTP--KELKAAGLGNGRVTMRKATPKKAAATSS---SPWYGPDRVKYLGPFSGEAP 67
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
SYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 68 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
>gi|169261110|gb|ACA52203.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera elata subsp. hookeri]
Length = 103
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L+ + ++ ++ KA A + S WYG +R ++LGP + PSYLTGE PGDYG+D A
Sbjct: 27 LDNGRVTMRKATPKKAAATSS---SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 83
Query: 150 GLSKDPMAFQKYFNFEILHA 169
GLS DP F K E++H+
Sbjct: 84 GLSADPETFAKNRELEVIHS 103
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 89 MLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
ML+T+ + S+ A R R+ + E RP W+ PS+L G LPGDYGFD
Sbjct: 4 MLKTQFGTQRISTHISATKRTVRSSVIASAESRPLWMPGTAA--PSHLKGMLPGDYGFDP 61
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
L +D Y E+ HARWAMLG G PE+L M G L P W
Sbjct: 62 LNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSDL--PNW 109
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+ RP WL + D P+YL G L GDYGFD GL +DP + + Y E++HAR+AMLG G
Sbjct: 55 QPRPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFG 112
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
LV ++L + G + PVW+ G K + L I L L G
Sbjct: 113 ILVTDLLRVTGLSKI--PVWFEAGAVKYEFTNTQTLIIVQLLLMG 155
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 89 MLETKKAALQDSSKFKALARQAR-NESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGF 146
L KK L++ + A++R A ++ ERP W G P P +L G LPGD+GF
Sbjct: 24 FLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTP---PEWLDGSLPGDFGF 80
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
D GLS DP + + E++H RWAMLGA G +PE L +G + P W+ G
Sbjct: 81 DPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILN--TPSWYTAG 134
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 66 SAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKA-------LARQARNESLWYG 118
SA + + A+A S ++ T KA+ + + AR A +
Sbjct: 3 SACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAAD 62
Query: 119 EERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA
Sbjct: 63 PDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 119
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
G +PE+L +G L P W+ G + +T
Sbjct: 120 GIFIPELLTKIGI--LNTPSWYTAGEQEYFTDT 150
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 89 MLETKKAALQDSSKFKALARQAR-NESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGF 146
L KK L++ + A++R A ++ ERP W G P P +L G LPGD+GF
Sbjct: 18 FLGGKKLRLKNKASVPAVSRSAALVRAVAADPERPIWFPGSTP---PEWLDGSLPGDFGF 74
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
D GLS DP + + E++H RWAMLGA G +PE L +G L P W+ G
Sbjct: 75 DPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGI--LNTPSWYTAG 128
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+ RP WL + D P+YL G L GDYGFD GL +DP + + Y E++HAR+AMLG G
Sbjct: 2 QPRPTWLPGL--DPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFG 59
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
LV ++L + G + PVW+ G K + L I L L G
Sbjct: 60 ILVTDLLRVTGLSKI--PVWFEAGAVKYEFTNTQTLIIVQLLLMG 102
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
++RP WL + D P YL G L GD+GFD GL +DP + Y E++HAR+AM G G
Sbjct: 54 QQRPTWLPGL--DPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAG 111
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
LV ++L + G +L PVW+ G K + + + L I L L G
Sbjct: 112 ILVTDLLRVTGISNL--PVWYEAGAVKFEFASTEALFIVQLILMG 154
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 10/115 (8%)
Query: 94 KAALQDSSKFKALARQARNES------LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++A S LAR+ R S + E + WL + PSYL G LPGD GFD
Sbjct: 19 RSAFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGL--SSPSYLNGSLPGDNGFD 76
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
GL++DP + + Y E+++ RWAMLG G L+PEVL +G ++ P W+ G
Sbjct: 77 PLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINV--PKWYDAG 129
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
+ A L SS+ A + E + WL +P P+YL G LPGD GFD GL
Sbjct: 17 SSSAFLGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPS--PAYLDGSLPGDNGFDPLGL 74
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
++DP + Y E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 75 AEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE 126
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
+ A L SS+ A + E + WL +P P+YL G LPGD GFD GL
Sbjct: 17 SSSAFLGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPS--PAYLDGSLPGDNGFDPLGL 74
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
++DP + Y E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 75 AEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE 126
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 13/121 (10%)
Query: 91 ETKKAALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELP 141
T AAL+ S+ K+ LAR E + WL +P P+YL G LP
Sbjct: 7 RTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLP 64
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GD GFD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+
Sbjct: 65 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDA 122
Query: 202 G 202
G
Sbjct: 123 G 123
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 13/121 (10%)
Query: 91 ETKKAALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELP 141
T AAL+ S+ K+ LAR E + WL +P P+YL G LP
Sbjct: 7 RTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLP 64
Query: 142 GDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
GD GFD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+
Sbjct: 65 GDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDA 122
Query: 202 G 202
G
Sbjct: 123 G 123
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIF 59
Query: 207 QGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L A Q ++ I CQ +LM
Sbjct: 60 SEGGLDYLGNPSLIHA--QSILAIWACQVILM 89
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
+ A L SS+ A + E + WL +P P+YL G LPGD GFD GL
Sbjct: 17 SSSAFLGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPS--PAYLDGSLPGDNGFDPLGL 74
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
++DP + Y E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 75 AEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE 126
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGP---IPYDYPSYLTGELPGDYGFDV 148
T K ++ ++ K + A + S WYG +R +L D PSYL G+L GDYGFD
Sbjct: 44 TVKKTVKKAAPVKTTVKTA-DLSKWYGPQRKLYLPSGLLTTADIPSYLDGKLAGDYGFDP 102
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
GL D A ++Y E++HARWAML G ++PE L++ G W G L+G
Sbjct: 103 LGLGAD-GAIKQYRVAEVIHARWAMLAVPGIVIPEALNIAGG------DWRETGKVFLEG 155
Query: 209 ET 210
T
Sbjct: 156 ST 157
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
++RP WL + D P YL G L GDYGFD GL +DP + + Y E++HAR+AMLG G
Sbjct: 58 QQRPTWLPGL--DSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAG 115
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L ++L + G L PVW+ G K +
Sbjct: 116 ILFTDLLRVTGIRKL--PVWYEAGAVKYE 142
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
++RP WL + D P YL G L GD+GFD GL +DP + + Y E++H+R+AM G G
Sbjct: 62 QQRPTWLPGL--DPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223
L ++L G +L PVW+ G +K Q L I + L G
Sbjct: 120 ILFTDLLRTTGLSNL--PVWYEAGATKFQFANTTTLFIVQMLLMG 162
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 50 ERPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAG 106
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 107 IFIPEFLTKIGI--LNTPSWYTAG 128
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 63 LVFSAIPFTAVKAIANSP-----LGELLQNRMLETKKAALQDSSKFKALARQARNESLWY 117
LV ++ FTAV A+ +P LG ++ L ++A + A+ A + +W+
Sbjct: 4 LVSNSSSFTAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWF 63
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
P P +L G LPGD+GFD GL DP + + +++H RWAMLGA
Sbjct: 64 PGSTP----------PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAA 113
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
G +PE L +G L P W+ G + +T
Sbjct: 114 GIFIPEFLTKIGI--LNTPSWYTAGEHQYFTDT 144
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL +G +
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 115 V--PKWYDAG 122
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 85/198 (42%), Gaps = 19/198 (9%)
Query: 37 PSRKNLLLKPKSSLVCK-ASWQELAGVLVFSAIPFTAVKAIANSP-----LGELLQNRML 90
P++K + K S V K A V P VK A +P + +++
Sbjct: 23 PAKKPVPAKKPSPFVKKTAPAPAKKTAPVKKTAPVKTVKKAAPAPKKTVPMKTVVRKAAP 82
Query: 91 ETKKAALQDSSKFKALARQARNESLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGF 146
K A ++ + K + + ++S WYG R P L I D PSY+ G L GDYGF
Sbjct: 83 VRKAAPVRKAGKASGVNQAGSDKSKWYGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGF 142
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
D L KD +Y E+ HARWAML G ++PE L + G W G L
Sbjct: 143 DPLQLGKD-GKIAQYRIAEVQHARWAMLAVPGVVIPEALGVPGGN------WTETGKVFL 195
Query: 207 QGET--LDYLGIPGLHLA 222
GE + LG P L A
Sbjct: 196 DGEAGRPEILGNPYLFTA 213
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L KAAL F+A A QAR + E+R W P P YL GEL GDYGFD
Sbjct: 4 LVANKAAL----GFRAPA-QARRSVVARAEQRASWFPGNPA--PEYLKGELAGDYGFDPL 56
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG----AFHLVEPVWWRVG 202
G +P + E++H RWAMLGA G L+PE+ + G A L P WW G
Sbjct: 57 GFGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAG 113
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 76 IANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSY 135
A +P+ LL + L K L SS LAR E + WL +P P+Y
Sbjct: 5 TARTPVAALLSSASL--KSTFLGQSST--RLARAPTTRRNVRAEAKGEWLPGLPS--PTY 58
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVE 195
L G LPGD GFD GL++DP + + E+++ RWAMLG G L+PEVL +G
Sbjct: 59 LNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--A 116
Query: 196 PVWWRVG 202
P W+ G
Sbjct: 117 PQWYDAG 123
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 50 ERPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 106
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 107 IFIPEFLTKIGI--LNTPSWYTAG 128
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
G+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQ 59
Query: 205 KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P +L +Q ++ I Q +LM
Sbjct: 60 IFSEGGLDYLGNP--NLIHAQSILAIWASQVVLM 91
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L SS+ A + E + WL +P P+YL G LPGD GFD GL++DP
Sbjct: 30 LGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPS--PAYLDGSLPGDNGFDPLGLAEDPE 87
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
+ Y E+++ RWAMLG G L+PEVL G + P W+ G S+
Sbjct: 88 NLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN--APQWYDAGKSE 134
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
GE+RP W G P P+YLTGE P D GFD GL+KDP +++ + E+ H+R AMLG
Sbjct: 67 GEKRPVWFPGATP---PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGV 123
Query: 177 LGALVPEV 184
+G+L+PE+
Sbjct: 124 VGSLIPEL 131
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +LTGE PGD GFD + +P +F++ E+ H R AMLG G L+PE+L
Sbjct: 263 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLG------ 316
Query: 193 LVEPVWWRVGYS 204
VW++ G S
Sbjct: 317 --RGVWFQAGES 326
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 71 TAVKAIAN-SPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWY-GEERPRWLGPI 128
+A KA+++ S + + L + K + + F A QA LW+ G P WL
Sbjct: 19 SATKAVSSGSAVKAAFFGKTLRSAKVSAVSKASFSVRA-QATERPLWFPGSTAPEWL--- 74
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
G LPGD+GFD GL +P + + EI+H RWAMLGA G +PE+L +
Sbjct: 75 --------DGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKI 126
Query: 189 GAFHLVEPVWWRVG 202
G + P W+ G
Sbjct: 127 GILN--TPSWYTAG 138
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 82 GELLQNRMLETKKAALQDSSKFKALARQARNESLWYG-EERPRWLGPIPYDYPSYLTGEL 140
G L N+ L+ A + S A R G ++RP WL + D P +L G L
Sbjct: 14 GSLFNNKSLDRGSPAGRLSWLGDGAAATPRYRQTCVGAQQRPTWLPGL--DPPPHLDGTL 71
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
GD+GFD GL++DP + + Y E++H R+AMLG G LV ++L + G + PVW+
Sbjct: 72 AGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKI--PVWFE 129
Query: 201 VGYSK 205
G K
Sbjct: 130 AGAVK 134
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 94 KAALQDSSKFKALARQARNESLWYGEERPRWLGP---IPYDYPSYLTGELPGDYGFDVAG 150
KAA Q + A+A+ WYG R +L D PSYL G L GDYGFD G
Sbjct: 78 KAARQPVDQKAAIAK-------WYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLG 130
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
L D + Y EILHARWAML G ++PE L++ G VW G L GET
Sbjct: 131 LGAD-GKVKDYRVAEILHARWAMLAVPGVVIPEALNIPGG------VWTETGKVFLDGET 183
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S + A ++SL ++ WL +P P+YL G L GD GFD GL++DP A
Sbjct: 30 SRNVQVAAAPISSQSLKVEAKKGEWLPGLPS--PAYLNGSLAGDNGFDPLGLAEDPAALN 87
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
Y E+ + RWAMLG G LVPEVL +G + P+W+ G
Sbjct: 88 WYVQAELQNGRWAMLGVAGMLVPEVLTKIGLIN--APLWYDAG 128
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
GE+RP W G P P+YLTGE P D GFD GL+KDP +++ + E+ H+R AMLG
Sbjct: 67 GEKRPVWFPGATP---PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGV 123
Query: 177 LGALVPEV 184
+G+L+PE+
Sbjct: 124 VGSLIPEL 131
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
GE+RP W G P P+YLTGE P D GFD GL+KDP +++ + E+ H+R AMLG
Sbjct: 429 GEKRPVWFPGATP---PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGV 485
Query: 177 LGALVPEV 184
+G+L+PE+
Sbjct: 486 VGSLIPEL 493
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +LTGE PGD GFD + +P +F++ E+ H R AMLG G L+PE+L
Sbjct: 263 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLG------ 316
Query: 193 LVEPVWWRVGYS 204
VW++ G S
Sbjct: 317 --RGVWFQAGES 326
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +LTGE PGD GFD + +P +F++ E+ H R AMLG G L+PE+L
Sbjct: 625 PPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLG------ 678
Query: 193 LVEPVWWRVGYS 204
VW++ G S
Sbjct: 679 --RGVWFQAGES 688
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 95 AALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
AAL+ S+ K+ LAR E + WL +P P+YL G LPGD G
Sbjct: 11 AALRPSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPGDNG 68
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
FD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+ G
Sbjct: 69 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAG 123
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 105 ALARQ-ARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
A++RQ A ++ +RP W G P P +L G LPGD+GFD GLS DP + +
Sbjct: 35 AVSRQDASVRAVAADPDRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNV 91
Query: 163 NFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
EI+H RWAMLGA G +PE L +G L P W+ G
Sbjct: 92 QAEIVHCRWAMLGAAGIFIPEFLTKIGI--LNTPSWYTAG 129
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 24/132 (18%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
+ LWYG +R ++LGP ++ P AF + E+
Sbjct: 39 GKYTMGNELWYGPDRVKYLGPFS----------------------AQTPFAFARNRALEV 76
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226
+H RWAMLGALG + PEVL+ EP+W++ G LDYLG P +L +Q
Sbjct: 77 IHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP--NLVHAQS 134
Query: 227 VIVIAICQALLM 238
++ + Q +LM
Sbjct: 135 ILAVLGFQVVLM 146
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 95 AALQDSSKFKA---------LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
AAL+ S+ K+ LAR E + WL +P P+YL G LPGD G
Sbjct: 11 AALRPSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPS--PTYLNGSLPGDNG 68
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
FD GL++DP + + E+++ RWAMLG G L+PEVL +G P W+ G
Sbjct: 69 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID--APQWYDAG 123
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +RP WL + D P +L G LPGD+GFD GL +DP + + Y E++H R+AM G
Sbjct: 56 GTQRPTWLPGL--DPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVA 113
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
G L ++L + G L PVW+ G +K +
Sbjct: 114 GILFTDLLRVSGNSDL--PVWFEAGAAKFE 141
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
+ ++RP WL + D P YL G L GD+GFD GL +DP + + Y E++HAR+AM G
Sbjct: 53 HAQQRPTWLPGL--DPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGV 110
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
G L ++L + G L PVW+ G K +
Sbjct: 111 AGILFTDLLRVTGIRKL--PVWYEAGAVKFE 139
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 79 SPLGE---LLQNRMLE--TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYP 133
SPLG L R L+ T A + S A + LW+ P P
Sbjct: 25 SPLGTTKAFLSGRKLKVNTFTAPVGARSTTTVCAAAEPDRPLWFPGSTP----------P 74
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193
+L G LPGD+GFD GLS DP + + E++H RWAMLGA G +PE L +G L
Sbjct: 75 PWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGI--L 132
Query: 194 VEPVWWRVGYSKLQGET 210
P W+ G + +T
Sbjct: 133 NTPSWYTAGEQEYFTDT 149
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G +
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGIIN 61
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 62 V--PKWYDAG 69
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPI 128
P A K + +P + L T+K+A + A + S WYG +R ++LGP
Sbjct: 11 PTLAGKPVKLTPSSQELGASRFTTRKSATTK--------KVASSGSPWYGPDRVKYLGPF 62
Query: 129 PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHAR---WAMLGALGALVPEVL 185
+ PSYLTGE PGDYG+D AGLS DP F K + W + +
Sbjct: 63 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCWVPW----DVSSQSF 118
Query: 186 DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
V + V+ ++ G LDYLG P L Q ++ I Q +LM
Sbjct: 119 CPVTVLNSVKLCGFKAGSQIFSEGGLDYLGNP--SLGSRQSILAIWATQVILM 169
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GLS DP + + EI+H RWAMLGA G
Sbjct: 51 DRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 108 IFIPEFLTKIGI--LNTPSWYTAG 129
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 66 SAIPFTAVKAIA---------NSPLGELLQNRMLETKK--AALQDSSKFKALARQARNES 114
SA +A+ A+A N G L R L KK AA+ S + A
Sbjct: 3 SACASSAITAVAISTPSSGQKNGSGGCFLSGRKLRVKKERAAIGGRSMGTTVCAVAE--- 59
Query: 115 LWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAM
Sbjct: 60 ----PDRPLWFPGSTP---PPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAM 112
Query: 174 LGALGALVPEVLDMVGAFHLVEPVWWRVG 202
LGA G +PE L +G L P W+ G
Sbjct: 113 LGAAGIFIPEFLTKIGV--LNTPSWYSAG 139
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDY 144
+ L T KAA + S + A ERP W G P P +L G LPGD+
Sbjct: 24 RTSFLGTGKAATRSSFTVRTAA-----------PERPIWFPGSTP---PPWLDGSLPGDF 69
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
GFD GL DP + + E++H RWAMLGA G +PE+L +G L P W+ G
Sbjct: 70 GFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGI--LNTPSWYTAGEQ 127
Query: 205 KLQGET 210
+ +T
Sbjct: 128 EYFTDT 133
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G +
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 193 LVEPVWWRVGYSK 205
+ P W+ G ++
Sbjct: 62 V--PKWYDAGKAE 72
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 53/99 (53%), Gaps = 12/99 (12%)
Query: 116 WYGEERPRWLGP----IPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARW 171
WYG +R +L P D PSYL G L GDYGFD GL D A ++Y E++HARW
Sbjct: 102 WYGPDRKLYL-PGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARW 159
Query: 172 AMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
AML G ++PE L + G VW G L GET
Sbjct: 160 AMLAIPGVVIPEALGLPGG------VWTETGKVFLDGET 192
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 62 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG 118
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 119 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDT 148
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 62 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG 118
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 119 IFIPEFLTKIGI--LNTPSWYTAGEQEYFTDT 148
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G +
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 62 V--PKWYDAG 69
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G +
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 62 V--PKWYDAG 69
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 121 IFIPEFLTKIGV--LNTPSWYTAGEQEYFTDT 150
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R L L F ++ A+ S ++ WL + P YLTG L GD GFD
Sbjct: 21 RFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLAS--PDYLTGSLAGDNGFD 78
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G
Sbjct: 79 PLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PEWYDAG 131
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G
Sbjct: 2 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFS 60
Query: 208 GETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
LDYLG P L +Q ++ I CQ +LM
Sbjct: 61 EGGLDYLGNP--SLVHAQSILAIWACQVVLM 89
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 80 PLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGE 139
P L + + + L S+ ++L +A+ E WL +P P+YL G+
Sbjct: 15 PSASLNSGFLGHSSRLGLASSTSRRSLRVEAKGE----------WLPGLPS--PAYLDGK 62
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG G L PE+L +G + P W+
Sbjct: 63 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN--APEWY 120
Query: 200 RVGYS 204
G S
Sbjct: 121 DAGKS 125
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 59 LAGVLVFSAIPFTAVKAIANSPLGELL---QNRMLETKKAALQDSSKFKALARQARNESL 115
+A V SA+ A + ++ G ++ + L K+ +L+ + A R +
Sbjct: 1 MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAA 60
Query: 116 WYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
RP W G P P +L G LPGD+GFD GL DP + EI+H RWAML
Sbjct: 61 AADPNRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAML 117
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVG 202
GA G +PE L +G L P W+ G
Sbjct: 118 GAAGIFIPEFLTKIGI--LNTPSWYTAG 143
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 69 PFTAVKAIANSPLGELLQNRMLETKK---AALQDSSKFKALARQARNESLWY-GEERPRW 124
P + V + S L R L T + AA D + L + LW G E P+W
Sbjct: 18 PTSKVVSNVGSARTSFLAGRALRTTQVCGAAKGDMTVSATLTGNKTDRPLWLPGSEAPKW 77
Query: 125 LGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184
L G LPGDYGFD L+ +P E++H RWAMLGA G +PE+
Sbjct: 78 L-----------DGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPEL 126
Query: 185 LDMVGAFHLVEPVWWRVG 202
L +G + P W++ G
Sbjct: 127 LTKIGILN--TPSWYKAG 142
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 86 QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYG 145
++R L + L FK ++ S ++ WL +P P+YL G LPGD G
Sbjct: 19 KSRFLSGSPSKLNREVAFKPMSSSP--ASFKVEAKKGEWLPGLPS--PAYLNGSLPGDNG 74
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
FD GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G
Sbjct: 75 FDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PKWYDAG 129
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
NR L K A S FK A++ WL +P PSYL G LPGD GF
Sbjct: 31 NRELSIKPMA-SSSPSFKVEAKKGE------------WLPGLPS--PSYLNGSLPGDNGF 75
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
D GL++DP + + E+++ RWAMLG G L+PEV +G + P W+ G ++
Sbjct: 76 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN--APQWYDAGKAE 132
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
NR L K A S FK A++ WL +P PSYL G LPGD GF
Sbjct: 31 NRELSIKPMA-SSSPSFKVEAKKGE------------WLPGLPS--PSYLNGSLPGDNGF 75
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
D GL++DP + + E+++ RWAMLG G L+PEV +G + P W+ G ++
Sbjct: 76 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN--APQWYDAGKAE 132
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
NR L K + FK A++ WL +P P+YL G LPGD GF
Sbjct: 31 NRALSVKPTTSSIPNAFKVEAKKGE------------WLPGLPS--PTYLDGSLPGDNGF 76
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
D GL++DP + Y E+++ RWAMLG G ++PEVL G ++ P W+ G
Sbjct: 77 DPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINV--PKWYDAG 130
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 57 DRPIWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G + P W+ G
Sbjct: 114 IFIPEFLTKIGILNT--PSWYTAG 135
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G +P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 56 DRPIWFPGSVP---PPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAG 112
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 113 IFIPEFLTKIGI--LSTPSWYTAGEQQYFTDT 142
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GLS DP + + E++H RWAMLGA G
Sbjct: 51 DRPIWFPGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGAAG 107
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 108 IFIPEFLTKIGI--LNTPSWYTAG 129
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 193 LVEPVWWRVGYSK 205
P W+ G S+
Sbjct: 123 --APQWYDAGKSE 133
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P++L G LP D+GFD GL +P + + EI+H+RWAMLGA G
Sbjct: 62 ERPLWFPGSTP---PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG 118
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 119 IFIPEALTKLGI--LNTPFWYTAG 140
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 49 ERPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 105
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE+L +G L P W+ G + +T
Sbjct: 106 IFIPELLTKIGI--LNTPSWYTAGEQEYFTDT 135
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
EER W + P+YLTGE PGD GFD AGLS DP F + EI+H R AML +G
Sbjct: 83 EERLLWFPNV--TPPAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVG 140
Query: 179 ALVPEVL 185
ALVP+ L
Sbjct: 141 ALVPDFL 147
>gi|413946552|gb|AFW79201.1| light harvesting complex mesophyll7 [Zea mays]
Length = 244
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAM 173
S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+
Sbjct: 48 SPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSPLGH 107
Query: 174 LG 175
G
Sbjct: 108 AG 109
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL G
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 122 V--PKWYDAG 129
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P++L G LP D+GFD GL +P + + EI+H+RWAMLGA G
Sbjct: 62 ERPLWFPGSTP---PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAG 118
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 119 IFIPEALTKLGI--LNTPFWYTAG 140
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD GL++DP + Y E+++ARWAMLG G LVPEVL +G +
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIIN 115
Query: 193 LVEPVWWRVGYS 204
P W+ G S
Sbjct: 116 --APQWYDAGKS 125
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G LPGD GFD GL++DP + Y E++++RWAMLG G L+PEV +G +
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 193 LVEPVWWRVG 202
P W+ G
Sbjct: 120 --APQWYDAG 127
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G LPGD GFD GL++DP + Y E++++RWAMLG G L+PEV +G +
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 193 LVEPVWWRVG 202
P W+ G
Sbjct: 123 --APQWYDAG 130
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYTAG 142
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 66 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 122
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 123 IFIPEFLTKIGI--LNTPSWYTAG 144
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 52 ERPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 108
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE+L +G L P W+ G +T
Sbjct: 109 IFIPELLTKIGI--LNTPSWYTAGEQTYFADT 138
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
RP W G P P +L G LPGD+GFD GL DP + EI+H RWAMLGA G
Sbjct: 66 NRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAG 122
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 123 IFIPEFLTKIGI--LNTPSWYTAG 144
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 57 DRPIWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 113
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 114 IFIPEFLTKIGI--LNTPSWYTAGEQQYFTDT 143
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P YL G+L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--DPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGI 102
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L ++L G +L PVW+ G K
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD 128
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + + Y E+++ RWAMLG G L+PEVL G
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 122 V--PKWYDAG 129
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 149 AGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQG 208
AGLS DP F +Y E++HARWAMLGALG + PE+L G E VW++ G Q
Sbjct: 1 AGLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNG-IPFGEAVWFKAGAQIFQD 59
Query: 209 ETLDYLGIPGLHLAGSQGVIVIAICQALLM 238
L+YLG L +Q ++ Q LLM
Sbjct: 60 GGLNYLGNE--SLVHAQSILATLAVQVLLM 87
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 74 KAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYP 133
K +N G+ L+ R L A+ A + LW+ P P
Sbjct: 27 KLASNFLTGKKLRLRNLNAAATAVVAPRTVPVCAAADPDRPLWFPGSTP----------P 76
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193
+L G LPGD+GFD GL+ DP + + E++H RWAMLGA G +PE L +G L
Sbjct: 77 PWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGI--L 134
Query: 194 VEPVWWRVG 202
P W+ G
Sbjct: 135 NTPSWYTAG 143
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 104 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN 163
K R R+ S+ +P W + D P +L GELPGDYGFD L K+P + Y
Sbjct: 17 KTTKRSQRSVSV-RASTQPMWFPGM--DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQ 73
Query: 164 FEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
E+ H RWAMLG GA PE+L +G L P W
Sbjct: 74 AELQHGRWAMLGVAGAAAPEILTKMGISDL--PNW 106
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 120 IFIPEFLTKLGI--LNTPSWYTAGEQEYFTDT 149
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 120 IFIPEFLTKLGI--LNTPSWYTAGEQEYFTDT 149
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL+ DP + + E++H RWAMLGA G
Sbjct: 75 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 132 IFIPEFLTKIGI--LNTPSWYTAG 153
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R L L FK++ ++ S ++ WL + P YL G L GD GFD
Sbjct: 21 RFLTGSSGRLNRELSFKSIGSSSKTASFKVEAKKGEWLPGL--ASPGYLNGSLAGDNGFD 78
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G
Sbjct: 79 PLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PEWYDAG 131
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYTAG 142
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 123 V--PKWYDAG 130
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV +G +
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 193 LVEPVWWRVGYSK 205
+ P W+ G ++
Sbjct: 121 V--PKWYDAGKAE 131
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 64 DRPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 121 IFIPEFLTKIGV--LNTPFWYTAGEQQYFTDT 150
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 64 VFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPR 123
+ + I + + ++IA L R T+ + + S++ ++ Q EER
Sbjct: 103 LITTILYKSKQSIA---LAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGSAPEEERLV 159
Query: 124 WL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVP 182
W P P +LTGE PGD GFD GLSKDP+ F++ E+ H R AMLG +G +VP
Sbjct: 160 WFPNATP---PDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVP 216
Query: 183 EVLDMVGA-FHLVEPVWWRVGYSKLQ 207
E+ G F L R+G LQ
Sbjct: 217 ELFFSQGPWFDLSSFNLTRLGLVALQ 242
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
EER W I P YLTGE GD GFD AGL+ DP+ F++ E+ H R +ML +G
Sbjct: 716 EERELWFPNIVP--PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVG 773
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
LVPE+L F +W +V +++
Sbjct: 774 CLVPELLGNGAWFQ----IWDKVDFNRF 797
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 119 EERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
+ERP W P PS+LTGE GD GFD AGL+ DP F++ E+ H R AML +
Sbjct: 347 DERPLWF---PNTLAPSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIV 403
Query: 178 GALVPEVL 185
GALVP+ L
Sbjct: 404 GALVPDYL 411
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 76 IANSPLGEL---LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
+ SPL L LQ + ++ A + LW+ P
Sbjct: 494 VGGSPLANLADHLQQPLQHNIADSIMHQWPVAMFASSGHKDGLWFPNAEP---------- 543
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P++LTGE P D GFD L+ DP + + E+ H R AML +G +VPE+L
Sbjct: 544 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 596
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A + LW+ P P++LTGE P D GFD L+ DP + + E
Sbjct: 901 FASSGHKDGLWFPNAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 950
Query: 166 ILHARWAMLGALGALVPEVL 185
+ H R AML +G +VPE+L
Sbjct: 951 VFHGRLAMLCMVGCIVPELL 970
>gi|169261094|gb|ACA52195.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 94
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
L +L T K ++ ++ + A + S WYG +R ++LGP + PSYLTGE PGDY
Sbjct: 24 LSPEVLGTGKVTMRKTAGKTKQTKSASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDY 83
Query: 145 GFDVAGLSKDP 155
G+D AGLS DP
Sbjct: 84 GWDTAGLSADP 94
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 19 ERPLWFPGNTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAG 75
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE+L +G + P W+ G
Sbjct: 76 IFIPELLTKLGILN--TPSWYTAG 97
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
R+L K + SS FK A++ WL +P P YL G LPGD GFD
Sbjct: 32 RVLSVKPVSASSSSSFKVEAKKGE------------WLPGLPS--PMYLNGSLPGDNGFD 77
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSK 205
GL++DP + Y E+++ RWAMLG G L+PEV +G + P W+ G ++
Sbjct: 78 PLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN--APQWYDAGKAE 133
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 54 NRPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 110
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 111 IFIPEFLTKIGV--LNTPFWYTAGEQQYFTDT 140
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE+L +G + P W+ G
Sbjct: 129 IFIPELLTKLGILN--TPSWYTAG 150
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 75 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAG 131
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 132 IFIPEFLTKIGI--LNTPSWYTAG 153
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGNTP---PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAG 128
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE+ +G + P W+ G
Sbjct: 129 IFIPELCTKLGILN--TPSWYTAG 150
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 122
Query: 193 LVEPVWWRVGYSK 205
+ P W+ G S+
Sbjct: 123 V--PKWYDAGKSE 133
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 64 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 120
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 121 IFIPEFLTKIGI--LNTPSWYDAG 142
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
F A N +W+ P P +L G LPGD+GFD GL DP + +
Sbjct: 44 SFAVRAAADPNRPIWFPGSTP----------PPWLDGSLPGDFGFDPWGLGSDPESLRWN 93
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
E++H RWAMLGA G +PE L +G + P W+ G + +T
Sbjct: 94 VQAELVHCRWAMLGAAGIFIPEFLTKIGVLN--TPFWYTAGEQQYFTDT 140
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYTAG 141
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 123 V--PKWYAAG 130
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 114 SLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHA 169
S WYG R P L I D PSYL G L GDYGFD L KD ++Y E++HA
Sbjct: 82 SKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKD-GKVEQYRAAEVIHA 140
Query: 170 RWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
RWAML G ++PE L + G VW G L GE
Sbjct: 141 RWAMLAIPGIVIPEALGIPGG------VWTETGKVFLDGE 174
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YLTG LPGD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 123 V--PKWYAAG 130
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYSAG 141
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++H RWAMLGA G
Sbjct: 63 DRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAG 119
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE L +G L P W+ G
Sbjct: 120 IFIPEFLTKIGI--LNTPSWYSAG 141
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD GFD GL+ DP + Y E+ + RWAM+G G L+PEVL +G +
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 193 LVEPVWWRVG 202
P+W+ G
Sbjct: 119 --APLWYDAG 126
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 54 NRPIWFPGSTP---PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAG 110
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
+PE L +G L P W+ G + +T
Sbjct: 111 IFIPEFLTKIGV--LNTPFWYTAGEQQYFTDT 140
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM 156
L +S+ R + E+P WL + + P +L LP DYGFD GL +P
Sbjct: 6 LGQTSRVTPTNSTRRMSPVTQATEQPVWLPGV--NVPQHLNRNLPADYGFDPLGLGSEPE 63
Query: 157 AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGE 209
A + Y E++H R+AMLG G L+P +L VG ++ P W+ G ++ +
Sbjct: 64 ALKWYVQAELVHCRFAMLGVAGILIPGLLTKVGILNV--PQWYEAGKVAIESQ 114
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G LPGD G D GL++DP + + Y E+++ RWAMLG G +PEVL +G +
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 122 V--PKWYDAG 129
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD GFD GL+ DP + Y E+ + RWAM+G G L+PEVL +G +
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 193 LVEPVWWRVG 202
P+W+ G
Sbjct: 119 --APLWYDAG 126
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD GL++DP + Y E+++ RWAMLG G L+PEV G +
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 193 LVEPVWWRVGYSK 205
P W+ G S+
Sbjct: 123 --APQWYDAGKSE 133
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 59 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 116
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
G L ++L + G L PVW+ G +K
Sbjct: 117 GILFTDLLRVSGNSDL--PVWFEAGAAKFD 144
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 105 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 162
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
G L ++L + G L PVW+ G +K
Sbjct: 163 GILFTDLLRVSGNSDL--PVWFEAGAAKFD 190
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
+PE+L +G + +P++ +KL G + Y G
Sbjct: 129 IFIPELLTKLGILN-TDPIF---PNNKLTGTDVGYPG 161
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +R WL + D P YL G LPGD+GFD GL ++P A + Y E++H R+AM G
Sbjct: 59 GTQRATWLPGL--DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVA 116
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
G L ++L + G L PVW+ G +K
Sbjct: 117 GILFTDLLRVSGNSDL--PVWFEAGAAKFD 144
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
E + WL +P PSYL G L GD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 47 EAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSK 205
L+PEVL G + P W+ G S+
Sbjct: 105 MLIPEVLTKAGLIN--APQWYDAGKSE 129
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE+L +G + P W+ G
Sbjct: 129 IFIPELLTKLGILN--TPSWYTAG 150
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
E + WL +P PSYL G L GD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 47 EAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSK 205
L+PEVL G + P W+ G S+
Sbjct: 105 MLIPEVLTKAGLIN--APQWYDAGKSE 129
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W G P P +L G LP D+GFD GL DP + E++H RWAMLGA G
Sbjct: 72 ERPLWFPGTTP---PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAG 128
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
+PE+L +G + P W+ G
Sbjct: 129 IFIPELLTKLGILN--TPSWYTAG 150
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G LPGD+GFD GLS DP + + E++H+RWAMLGA G +PE L +G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-- 58
Query: 193 LVEPVWWRVGYSKLQGET 210
L P W+ G + +T
Sbjct: 59 LNTPSWYTAGEQEYFTDT 76
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQ----ARNESLWYGEERPRWL-GPIPYDYPSYLTGE 139
L+ L ++ AA+ + +A A + A E L G +RP W G P P +L G
Sbjct: 21 LRAPTLPSQNAAVARMAGHRAGATKGGVSAVCEPL--GPDRPLWFPGSSP---PPWLDGS 75
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD+GFD GL DP + + E++H+RWAML A G LVPEVL+ G
Sbjct: 76 LPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILVPEVLEKWGFME------- 128
Query: 200 RVGYSKLQGETLDYLGIP 217
YS + DY P
Sbjct: 129 --DYSWIDAGARDYFADP 144
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L ++L G +L PVW+ G K
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD 128
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L ++L G +L PVW+ G K
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD 128
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 45 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L ++L G +L PVW+ G K
Sbjct: 103 LFTDLLRTTGIRNL--PVWYEAGAVKFD 128
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + + P YL G L GDYGFD GL +DP + + Y E++H+R+AMLG G
Sbjct: 37 ERATWLPGL--NPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 94
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L ++L G +L PVW+ G K
Sbjct: 95 LFTDLLRTTGIRNL--PVWYEAGAVKFD 120
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFG 111
Query: 179 ALVPEVLDMVG 189
LVPE+L+ +G
Sbjct: 112 ILVPELLEKIG 122
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++HARWAMLG G
Sbjct: 61 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 179 ALVPEVLDMVG 189
L+PE+L+ +G
Sbjct: 118 ILIPEILEKIG 128
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 82 GELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPS-YLTGEL 140
G++ +R L+ + + S + ++ +A G ERP W P P+ +L G L
Sbjct: 7 GDIGAHRRLKARATTTRASRRSVVVSAEA-------GAERPVWY---PGKAPAPHLDGSL 56
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
PGD+GFD LS DP + E+ HARWAMLG GA+ PE+L +G L P W
Sbjct: 57 PGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGVADL--PNWVD 114
Query: 201 VG 202
G
Sbjct: 115 AG 116
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+RP WL + P +L G LPGDYGFD L+ +P E++H RWAMLGA G
Sbjct: 13 DRPLWL--PGSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGI 70
Query: 180 LVPEVLDMVGAFHLVEPVWWRVG 202
+PE+L +G + P W++ G
Sbjct: 71 FIPELLTKIGILN--TPSWYKAG 91
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++HARWAMLG G
Sbjct: 61 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 179 ALVPEVLDMVG 189
L+PE+L+ +G
Sbjct: 118 ILIPEILEKIG 128
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 119 EERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
+RP W G P P +L G LPGD+GFD GL DP + + E++H RWAMLGA
Sbjct: 63 NDRPLWFPGSQP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAA 119
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVG 202
G +PE L G + P W G
Sbjct: 120 GIFIPEALTKAGILN--TPSWTVAG 142
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML
Sbjct: 21 GPDRPLWFPGSSP---PPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAV 77
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
G LVPEVL+ G YS + DY P
Sbjct: 78 AGILVPEVLEKWGFME---------DYSWIDAGARDYFADP 109
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 64 VFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPR 123
+ + I + + ++IA L R T+ + + S++ ++ Q EER
Sbjct: 103 LITTILYKSKQSIA---LAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGNAPEEERLV 159
Query: 124 WL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVP 182
W P P +LTGE PGD GFD GLS DP+ F++ E+ H R AMLG +G +VP
Sbjct: 160 WFPNATP---PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVP 216
Query: 183 EVL 185
E+
Sbjct: 217 ELF 219
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
EER W I P YLTGE GD GFD AGL+ DP+ F++ E+ H R +ML +G
Sbjct: 716 EERELWFPNIVP--PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVG 773
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
LVPE+L F +W +V +++
Sbjct: 774 CLVPELLGNGAWFQ----IWDKVDFNRF 797
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 9/84 (10%)
Query: 103 FKALARQARNESLWYGEERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
F A R+++ +ERP W P PS+L GE GD GFD AGL+ DP F++
Sbjct: 336 FAASGRKSQKS-----DERPLWF---PNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERM 387
Query: 162 FNFEILHARWAMLGALGALVPEVL 185
E+ H R AML +GALVP+ L
Sbjct: 388 RIAEVYHGRLAMLAVVGALVPDYL 411
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 76 IANSPLGEL---LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
+ SPL L LQ + ++ A + LW+ P
Sbjct: 494 VGGSPLANLAEHLQQPLQRNIADSIMHQWPVAMFASSGHKDGLWFPNAEP---------- 543
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P++LTGE P D GFD L+ DP + + E+ H R AML +G +VPE+L
Sbjct: 544 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 596
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A + LW+ P P++LTGE P D GFD L+ DP + + E
Sbjct: 901 FASSGHKDGLWFPNAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 950
Query: 166 ILHARWAMLGALGALVPEVL 185
+ H R AML +G +VPE+L
Sbjct: 951 VFHGRLAMLCMVGCIVPELL 970
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 119 EERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
+ERP WL G P P +L G L GD+GFD L KDP + Y E++H+R+AM G
Sbjct: 41 DERPIWLPGLSP---PQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMAGIA 97
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
G LV ++L VG L PVW+ G ++ +
Sbjct: 98 GILVTDLLRTVGGRDL--PVWYEAGATEFE 125
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFG 111
Query: 179 ALVPEVLDMVG 189
LVPE+L+ +G
Sbjct: 112 ILVPELLERIG 122
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD L++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIIN 122
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 123 V--PKWYDAG 130
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFG 111
Query: 179 ALVPEVLDMVG 189
LVPE+L+ +G
Sbjct: 112 ILVPELLERIG 122
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQ----ARNESLWYGEERPRWL-GPIPYDYPSYLTGE 139
L+ L ++ AA+ + +A A + A E L G +RP W G P P +L G
Sbjct: 21 LRAPTLPSQNAAVARMAGHRAGATKGGVSAVCEPL--GPDRPLWFPGSSP---PPWLDGS 75
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD+GFD GL DP + + E++H+RWAML G LVPEVL+ G
Sbjct: 76 LPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFME------- 128
Query: 200 RVGYSKLQGETLDYLGIP 217
YS + DY P
Sbjct: 129 --DYSWIDAGARDYFADP 144
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 67 AIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLG 126
A+ F+A A+ P ++ L+ S+ L A++E R WL
Sbjct: 2 AVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSE------HRQTWLP 55
Query: 127 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186
+ D P +L G L GD+GFD GL +DP + + Y E++H R+AMLG G L+ ++L
Sbjct: 56 GL--DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLR 113
Query: 187 MVGAFHLVEPVWWRVG 202
+ G L PVW+ G
Sbjct: 114 VTGISEL--PVWYNAG 127
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G LPGD GFD GL++DP + + E+ + RWAMLG G L+PEV +G +
Sbjct: 62 PDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGIIN 121
Query: 193 LVEPVWWRVG 202
P W+ G
Sbjct: 122 --APQWYDAG 129
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P YL G LPGDYGFD GL ++P + Y E++H R+AM G G
Sbjct: 51 ERATWLPGL--DPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGI 108
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L +++ + G +L PVW+ G +K
Sbjct: 109 LGTDLIRVSGISNL--PVWFEAGATKFD 134
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P+YL G LPGDYGFD GL + P + Y E++H R+AM G G
Sbjct: 49 ERATWLPGL--DPPAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGI 106
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L +++ + G +L PVW+ G +K
Sbjct: 107 LGTDLIRVSGIGNL--PVWFEAGATKFD 132
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + E++HARWAMLG G
Sbjct: 53 DRPLWFPGSSP---PEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
L+PE+L+ +G YS + T +Y P
Sbjct: 110 ILIPELLEKMGYVE---------NYSWYEAGTQEYFADP 139
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P YL GEL GDYG+D GL DP+A + Y E++HARWAMLG G LV EV+
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVV 94
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
E + WL +P PSYL G L GD GFD GL++DP + + E+++ RWAMLG G
Sbjct: 47 EAKGEWLPGLPS--PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAG 104
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSK 205
L+PEVL G + P W+ S+
Sbjct: 105 MLIPEVLTKAGLIN--APQWYDASKSE 129
>gi|240064638|gb|ACS44644.1| putative chlorophyll a/b binding protein [Lemna minor]
Length = 49
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 49
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER W P P++L G LPGD+G+D GL+KDP++ +Y E+++ RWAMLG G
Sbjct: 37 ERKLW-APGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGVAGM 95
Query: 180 LVPEVL 185
L PE++
Sbjct: 96 LAPELV 101
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPG++GFD GL DP + E++HARWAMLG G
Sbjct: 61 DRPLWFPGSSP---PEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSG 117
Query: 179 ALVPEVLDMVG 189
L+PE+L+ +G
Sbjct: 118 ILIPEILEKIG 128
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + + E++H RWAML A G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 179 ALVPEVLDMVG 189
L+PE L+ +G
Sbjct: 112 ILIPEWLERLG 122
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + + E++H RWAML A G
Sbjct: 55 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 179 ALVPEVLDMVG 189
L+PE L+ +G
Sbjct: 112 ILIPEWLERLG 122
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 104 KALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYF 162
+ LA A N ++ R W+ G P P++LTG LP DYGFD GL K+P ++
Sbjct: 20 RKLATNATNGTVGKVSARAVWMPGSTP---PAHLTGTLPCDYGFDPLGLGKEPANLARFQ 76
Query: 163 NFEILHARWAMLGALGALVPEVLDMV 188
EI+H+RWAMLG GA E + V
Sbjct: 77 EAEIIHSRWAMLGVAGAAGQEAITGV 102
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L ELPGDYGFD L KDP + Y E+ H RWAMLG GA PE+L +G +
Sbjct: 9 PAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEILTNMGISN 68
Query: 193 LVEPVW 198
L P W
Sbjct: 69 L--PNW 72
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P +L G LPGD+GFD GL ++P + Y E++H R+AM G G
Sbjct: 53 ERATWLPGL--DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGI 110
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L +++ + G +L PVW+ G +K
Sbjct: 111 LATDLIRVSGINNL--PVWFEAGATKFD 136
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 63 DRPLWFPGSAP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 119
Query: 179 ALVPEVLDMVG 189
L+PE L+ +G
Sbjct: 120 ILIPECLERLG 130
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YLTG L GD GFD GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 125 V--PEWYDAG 132
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + N E++H RWAMLG G + PEVL
Sbjct: 69 SYLDGSLPGDYGFDPLGLS-DPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGG 127
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIP 217
+G VW++ G QG T DY P
Sbjct: 128 LGIIPQETGLVWYKAGMIPAQG-TYDYWANP 157
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GFD L++DP + + E+++ RWA LG G L+PEVL +G +
Sbjct: 63 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLIN 122
Query: 193 LVEPVWWRVGYSK 205
+ P W+ G ++
Sbjct: 123 V--PKWYDAGKAE 133
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 124 WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPE 183
WL P PY P++L G + GDYGFD GL DP + Y E+++ARWAM+ G + E
Sbjct: 2 WL-PAPYKAPAHLDGTVAGDYGFDPLGLGSDPTRLKYYQEAELMNARWAMMAVAGIVGTE 60
Query: 184 VLDMVGAFHLVEPVWWRVG 202
+ +EP WW G
Sbjct: 61 IAG-------IEPRWWEAG 72
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
R L +AA+ + AR+ + ER WL + PSYL GELPGD+GF
Sbjct: 4 ERPLHASRAAILRHLELLLTVSAARSARVVVRAERASWL--PGSEIPSYLKGELPGDFGF 61
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D L +DP A + Y E+ + RWAML A G L ++L +GA
Sbjct: 62 DPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLGA 105
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
ER WL + D P +L G LPGD+GFD GL ++P + Y E++H R+AM G G
Sbjct: 53 ERATWLPGL--DPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGI 110
Query: 180 LVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L + + + G +L PVW+ G +K
Sbjct: 111 LATDFIRVSGINNL--PVWFEAGATKFD 136
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 120 ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
+RP W P +L G LPGD+GFD GL DP + + E++H RWAMLGA G
Sbjct: 1 DRPLWF--PGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGI 58
Query: 180 LVPEVLDMVGAFHLVEPVW 198
+PE L G + P W
Sbjct: 59 FIPEALTKAGILN--TPSW 75
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEER----PRWLGPIPYDYPSYLTGELPGDYGFD 147
KKAA S K ++ + + WYG+ R P L D PSY+ G L GDYGFD
Sbjct: 59 VKKAAPVKKSSGKP-SQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGFD 117
Query: 148 VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L D Y E++HARWAML G ++PE L + G VW G L
Sbjct: 118 PLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEALGIPGG------VWTETGKVFLD 170
Query: 208 GE 209
GE
Sbjct: 171 GE 172
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 179 ALVPEVLDMVG 189
++PE L+ +G
Sbjct: 121 IIIPECLERLG 131
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 179 ALVPEVLDMVG 189
++PE L+ +G
Sbjct: 121 IIIPECLERLG 131
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 64 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 179 ALVPEVLDMVG 189
++PE L+ +G
Sbjct: 121 IIIPECLERLG 131
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
L+T+ A +S+ + +WY + P ++L G LPGDYGFD
Sbjct: 13 LKTRVATKTRASRGPVAVSANADRPVWYPGKAPA----------AHLDGSLPGDYGFDPL 62
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198
LS DP Q E+ HARWAMLG G + PE+L +G L P W
Sbjct: 63 SLSADPEMRQWMVQAELQHARWAMLGVAGCVAPELLTKIGVADL--PNW 109
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 53 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG 109
Query: 179 ALVPEVLDMVG 189
L+PE L+ +G
Sbjct: 110 ILIPECLERLG 120
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP WL G P P++L G L GD+GFD GL +DP + Y E++H+R+AM G G
Sbjct: 1 ERPLWLPGTTP---PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAG 57
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKLQ 207
L ++L G + PVW+ G +K
Sbjct: 58 ILFTDLLRASGRTDI--PVWFEAGATKFD 84
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G LPGD GF GL++DP + + E+++ RWAMLG G L+PEV +G +
Sbjct: 12 PTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLPEVFTNIGILN 71
Query: 193 LVEPVWWRVG 202
+ P W+ G
Sbjct: 72 V--PKWYDAG 79
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + N E++H RWAMLG G + PEVL
Sbjct: 60 SYLDGSLPGDYGFDPLGLS-DPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGG 118
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIP 217
+G VW++ G QG T DY P
Sbjct: 119 MGIIPQETGLVWFKAGMIPAQG-TYDYWASP 148
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 23 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAG 79
Query: 179 ALVPEVLDMVG 189
L+PE L+ +G
Sbjct: 80 ILIPECLERLG 90
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 120 ERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W P Y PSYLTG+ GD GFD AGL+ DP F++ E+ H R AML +G
Sbjct: 194 DRPLWF---PGGYAPSYLTGQYFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLAIVG 250
Query: 179 ALVPEVL 185
A+VP++L
Sbjct: 251 AVVPDIL 257
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 36/58 (62%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
P++LTGE PGD GFD GLSKDP F + E+ H R AMLG +G + E L GA
Sbjct: 18 PAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVGCVGQEWLFNKGA 75
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P+YLTGE P D GFD AGL+ DP +++ E+ + R AML +G + PE+L
Sbjct: 573 PAYLTGEFPADRGFDPAGLAADPKVYERMRVAEVFNGRLAMLAIVGCVYPELL 625
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A + +W+ +P P++LTGE P D GFD L+ DP + + E
Sbjct: 373 FAATGHKDGVWFPGAQP----------PAHLTGEYPADRGFDPLSLAADPTVYARMRVSE 422
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
+ HAR +ML +G++VPE+L + W+ VG S
Sbjct: 423 VFHARLSMLAIVGSIVPELLG--------KGAWFEVGNS 453
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A + +W+ +P P++LTGE P D GFD L+ DP + + E
Sbjct: 746 FATTGHKDGVWFPGAQP----------PAHLTGEYPADRGFDPLSLAADPTVYARMRVSE 795
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYS 204
+ HAR +ML +G+++PE+L + W+ VG S
Sbjct: 796 VFHARLSMLAIVGSILPELLG--------KGAWFEVGNS 826
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL +LPG YGFD L +DP + + Y E++H+R+AM G L+PEVL GA +
Sbjct: 45 PAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEVLKAFGAVN 103
Query: 193 LVEPVWWRVG 202
L PVW+ G
Sbjct: 104 L--PVWYEAG 111
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 116 WYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWA 172
WYG +R +L D P YL GE+PGDYG+D GLSK P F KY +E++HARW
Sbjct: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWV 124
Query: 173 ML 174
+L
Sbjct: 125 VL 126
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL +P + + E++H+RWAML
Sbjct: 64 GPDRPVWFPGTSP---PPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAMLAV 120
Query: 177 LGALVPEVLDMVG 189
G L+PE+L G
Sbjct: 121 AGILIPEILQKWG 133
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
D P++L +LPG+YGFD L KDP + +++ E++H RWAMLG GAL E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGALAVELL 98
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P+YL G PGD+GFD GL++ P F +Y E++H RWAML G L+PE L +
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALGL 109
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGAL 180
RP WL P P++L G LP DYGFD L DP + + E++H RWAMLG G +
Sbjct: 42 RPTWLPGSPA--PAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMV 99
Query: 181 VPEVLDMVGAFHLVEPVWWRVG 202
PE+L +G L P W G
Sbjct: 100 GPELLTKIGMADL--PNWIDAG 119
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P YL GEL GDYG+D GL DP A + Y E+ HARWAMLG G LV E++
Sbjct: 30 PEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV 82
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 59 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 179 ALVPEVLDMVG 189
L+PE + +G
Sbjct: 116 ILLPEWFESLG 126
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++H+RWAML G
Sbjct: 91 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAG 147
Query: 179 ALVPEVLDMVG 189
L+PE L+ +G
Sbjct: 148 ILIPEWLESLG 158
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL 106
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 120 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
+RP W G P P +L G LPGD+GFD GL DP + + E++HARWAML G
Sbjct: 59 DRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAG 115
Query: 179 ALVPEVLDMVG 189
L+PE + +G
Sbjct: 116 ILLPEWFESLG 126
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
D P YL G LPGD+GFD L +DP+ + Y E+++AR+AML G LVPE+L +G
Sbjct: 66 DLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIG 124
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
D P YL G LPGD+GFD L +DP+ + Y E+++AR+AML G LVPE+L +G
Sbjct: 66 DLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIG 124
>gi|210162154|gb|ACJ09675.1| putative chlorophyll a/b-binding protein [Cupressus sempervirens]
Length = 129
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 116 WYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLG 175
WY ++R +L P+ + PSYLTGE DYG D A S D K E++H+R +ML
Sbjct: 14 WYEQDRVLYLTPMS-EPPSYLTGEFTSDYGCDTAS-STDTETCAKNRELEVIHSR-SMLS 70
Query: 176 ALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQA 235
AL +V L G +VE VW+ G LDYLG +H +Q ++ I CQ
Sbjct: 71 ALRCVV--ALATYGV-SIVEAVWFAGALFSEGG--LDYLGSSLIH---AQSILAIWACQV 122
Query: 236 LLM 238
+LM
Sbjct: 123 ILM 125
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K ++++RQ+ S +R W + D P++L G LPGD+GFD GLS DP +
Sbjct: 15 KSRSVSRQSARASFVVKAQRDVWWPGV--DAPAHLDGSLPGDFGFDPLGLSVDPEMKKWM 72
Query: 162 FNFEILHARWAMLGALGALVPEV 184
E+ HARWAMLG G + P++
Sbjct: 73 VQAELQHARWAMLGVAGMVGPDL 95
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
D P YL G LPGD+GFD L +DP+ + Y E+++AR+AML G LVPE+L +G
Sbjct: 52 DLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIG 110
>gi|116783810|gb|ABK23091.1| unknown [Picea sitchensis]
Length = 110
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDP 155
A ++S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP
Sbjct: 56 ASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 101
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 65 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 121
Query: 177 LGALVPEVLDMVG 189
G L+PE+L G
Sbjct: 122 AGILIPEILQKWG 134
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 154 DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
D F K E++H+RWAMLGALG + PE+L G E VW++ G LDY
Sbjct: 1 DTETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGAQIFSEGGLDY 59
Query: 214 LGIPGLHLAGSQGVIVIAICQALLM 238
LG P L A Q ++ I CQ +LM
Sbjct: 60 LGNPSLIHA--QSILAIWACQVVLM 82
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 65 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 121
Query: 177 LGALVPEVLDMVG 189
G L+PE+L G
Sbjct: 122 AGILIPEILQKWG 134
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD G +P + + + E++H RWAML
Sbjct: 62 GPDRPVWFPGTAP---PPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAMLAV 118
Query: 177 LGALVPEVLDMVG 189
G L+PE+L G
Sbjct: 119 AGILIPEILQKWG 131
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
PSYL G PGD+GFD GL + P ++Y E++H RWAML G +VPE L +
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL 110
>gi|126251|sp|P08976.1|LH18_EUGGR RecName: Full=Light-harvesting complex I LH38 proteins; Contains:
RecName: Full=LH38 protein 1; Contains: RecName:
Full=LH38 protein 2; Contains: RecName: Full=LH38
protein 3; Flags: Precursor
gi|755729|emb|CAA31338.1| unnamed protein product [Euglena gracilis]
Length = 530
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 119 EERPRWLGPI-PYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
EER W I P P YLTGE GD GFD AGL+ DP+ F++ E+ H R +ML +
Sbjct: 369 EERELWFPNIVP---PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALV 425
Query: 178 GALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
G LVPE+L F +W +V +++
Sbjct: 426 GCLVPELLGNGAWFQ----IWDKVDFNRF 450
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
PS+L GE GD GFD AGL+ DP F++ E+ H R AML +GALVP+ L
Sbjct: 12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL 64
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 76 IANSPLGEL---LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
+ SPL L LQ + ++ A + LW+ P
Sbjct: 147 VGGSPLANLAEHLQQPLQRNIADSIMHQWPVAMFASSGHKDGLWFPNAEP---------- 196
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P+ LTGE P D GFD L+ DP + + E+ H R AML +G +VPE+L
Sbjct: 197 PALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL 249
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
PSYL G PGD+GFD GL + P ++Y E++H RWAML G +VPE L +
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL 110
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL 63
>gi|30694148|ref|NP_850706.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645786|gb|AEE79307.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 164
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP 132
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL------SKDPMAFQKYFNFEILHARWA 172
ERP W P +L G LPGD+GFD GL DP + + E++H RWA
Sbjct: 62 NERPLWF--PGSQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWA 119
Query: 173 MLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
MLGA G +PE L +G + P W G
Sbjct: 120 MLGAAGIFIPEALTKMGILN--TPSWTVAG 147
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P YL G+L GDYG+D GL DP A + Y E+ HARWAMLG G LV E++
Sbjct: 42 PEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGVAGVLVQEIV 94
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P +L G +PGDYGFD GL +D +A + Y E+ HARWAMLG G PE++
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELI 104
>gi|157965819|gb|ABW06946.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 823
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
EER W I P YLTGE GD GFD AGL+ DP+ F++ E+ H R +ML +G
Sbjct: 458 EERELWFPNIVP--PRYLTGEAFGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVG 515
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVGYSKL 206
LVPE+L F +W +V +++
Sbjct: 516 CLVPELLGNGAWFQ----IWDKVDFNRF 539
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 119 EERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
E+RP W P PS+LTGE GD GFD AGL+ DP F++ E+ H R AML +
Sbjct: 89 EDRPLWF---PNTLAPSWLTGEYFGDRGFDPAGLAADPETFERMRIAEVYHGRLAMLAVV 145
Query: 178 GALVPEVL 185
GALVP+ L
Sbjct: 146 GALVPDYL 153
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 76 IANSPLGEL---LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDY 132
+ SPL L LQ + ++ A + LW+ + P
Sbjct: 236 VGGSPLANLADHLQQPLQRNIADSIMHQWPVAMFASSGHKDGLWFPDAEP---------- 285
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P++LTGE P D GFD L+ DP + + E+ H R AML +G +VPE+L
Sbjct: 286 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELL 338
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 106 LARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
A + LW+ + P P++LTGE P D GFD L+ DP + + E
Sbjct: 643 FASSGHKDGLWFPDAEP----------PAHLTGEYPADRGFDPLNLAADPDVYARMRVAE 692
Query: 166 ILHARWAMLGALGALVPEVL 185
+ H R AML +G +VPE+L
Sbjct: 693 VFHGRLAMLCMVGCIVPELL 712
>gi|207853272|gb|ACI25421.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G LPGD+GFD GL DP + Y E+++ARWAM+ G EVL
Sbjct: 60 PAHLDGTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAGITATEVLG------ 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGI 216
+ P W+ VG + L L I
Sbjct: 114 -IGPAWYDVGAADFDFPPLALLAI 136
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 127 PIPYDYP---------SYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
P+P D P ++L G LPGD+GFD GL DP + + E++H+RWAML
Sbjct: 61 PLPPDRPYGSLVALHLNWLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVT 120
Query: 178 GALVPEVLDMVG 189
G ++PE L+ +G
Sbjct: 121 GIIIPECLERLG 132
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAML 174
LW+ + P P++L G LP DYGFD L DP E++H RWAM+
Sbjct: 1 LWFPGDTP----------PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMM 50
Query: 175 GALGALVPEVLDMVGAFHLVEPVWWRVG 202
G G LVP +L +GA ++ PVW+ G
Sbjct: 51 GVAGILVPALLTKLGAMNV--PVWFEAG 76
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PEVL G
Sbjct: 56 PAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-- 113
Query: 193 LVEPVWWRVG 202
L P W+ G
Sbjct: 114 LNAPEWYDAG 123
>gi|305377034|dbj|BAJ15880.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 96
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 155 PMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYL 214
P F K E++H RWAMLGALG + PE+L G E VW++ G LDYL
Sbjct: 1 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYL 59
Query: 215 GIPGLHLAGSQGVIVIAICQALLM 238
G P L A Q ++ I CQ +LM
Sbjct: 60 GNPSLIHA--QSILAIWACQVILM 81
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP 132
>gi|207853256|gb|ACI25413.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP 132
>gi|207853258|gb|ACI25414.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|207853262|gb|ACI25416.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|207853246|gb|ACI25408.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P +++ E++H RWAML G L+PE L G +
Sbjct: 58 PAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEAL---GLGN 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
VE W + G YLG P
Sbjct: 115 WVEAQQW----AATPGGQATYLGTP 135
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
PSYL G PGD+GFD GL + P +++ E++HARWAML G L+PE L
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL 63
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 121 RPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
RP + G P P +L G +PGDYGFD GL +D A Y E++HARWAMLG G
Sbjct: 41 RPNYFPGSTP---PKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGM 97
Query: 180 LVPEVL 185
PE+
Sbjct: 98 AAPEIF 103
>gi|207853236|gb|ACI25403.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP 132
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 133 PSYLTGELPGDYGFD--VAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
P+YLTGELPGD G+D G +D K E++H RWAML A+G L PE+ +G
Sbjct: 1339 PAYLTGELPGDVGWDPLQMGAQRD---LTKLRERELIHGRWAMLAAVGVLTPELTAKLGV 1395
Query: 191 FHLVEPVWWRVGYS-----KLQGETLDYLG 215
F WW + L G L YLG
Sbjct: 1396 FGAPGSHWWNTAINFPTEGGLAGAELTYLG 1425
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
VE W + + G YLG+P
Sbjct: 114 WVEAQKW----AAIPGGQATYLGVP 134
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 62 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 118
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
G LVP++L G G+S + +Y P
Sbjct: 119 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP 151
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 62 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 118
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
G LVP++L G G+S + +Y P
Sbjct: 119 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP 151
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PEVL G
Sbjct: 39 PAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL-- 96
Query: 193 LVEPVWWRVG 202
L P W+ G
Sbjct: 97 LNAPEWYDAG 106
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
+AR RP W + P++L G+LP DYGFD L + P +Y E++H
Sbjct: 19 KARARVTARASARPMWFPGA--EAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMH 76
Query: 169 ARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVI 228
ARWAM+G GA+ E+ G + +P W L ET P + G GV+
Sbjct: 77 ARWAMMGVAGAVGVEIAGQ-GDWASAQPTTWDATAKYLGNETH----APLFAVIGVNGVL 131
Query: 229 V 229
V
Sbjct: 132 V 132
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP 132
>gi|207853266|gb|ACI25418.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|207853232|gb|ACI25401.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|207853250|gb|ACI25410.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PRWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|207853200|gb|ACI25385.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853202|gb|ACI25386.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853204|gb|ACI25387.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853218|gb|ACI25394.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853220|gb|ACI25395.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853222|gb|ACI25396.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853224|gb|ACI25397.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853226|gb|ACI25398.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853228|gb|ACI25399.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853230|gb|ACI25400.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853234|gb|ACI25402.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853238|gb|ACI25404.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853240|gb|ACI25405.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853248|gb|ACI25409.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853252|gb|ACI25411.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853254|gb|ACI25412.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853260|gb|ACI25415.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853264|gb|ACI25417.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853268|gb|ACI25419.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853274|gb|ACI25422.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853276|gb|ACI25423.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853282|gb|ACI25426.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|207853244|gb|ACI25407.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP 132
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGY 203
+ EI++ R+AMLGA+GA+ PE+L G + W+R G+
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGF 142
>gi|207853208|gb|ACI25389.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVG 202
G
Sbjct: 59 DAG 61
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 63
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 64 WVKAQEW----AALPGGQATYLGNP 84
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
PSYL G +P DYGFD GL K+P ++ E++HARWAMLG GA E++
Sbjct: 46 PSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSGAAGAEII 98
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L +
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGL 110
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 118 GEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176
G +RP W G P P +L G LPGD+GFD GL +P + + E++H RWAML A
Sbjct: 23 GPDRPIWFPGSSP---PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAA 79
Query: 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIP 217
G LVP++L G G+S + +Y P
Sbjct: 80 AGILVPDLLARWGFID--------AGFSWFDAGSREYFADP 112
>gi|207853280|gb|ACI25425.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPGNLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL 98
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL 134
>gi|207853278|gb|ACI25424.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL 98
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
D P++L +LPG+YGFD L KDP + +++ E++H RWAMLG G+L E+L
Sbjct: 8 DAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELL 62
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 107
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD L++DP + + E+++ RWAMLG G L+PE+L G
Sbjct: 58 PAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGL-- 115
Query: 193 LVEPVWWRVG 202
L P W+ G
Sbjct: 116 LSAPEWYDAG 125
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 107 ARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
AR AR + RP WL G P P++L GELPGD+GFD GL + + + + E
Sbjct: 15 ARSARRSVVSKASSRPLWLPGSTP---PAHLKGELPGDFGFDPLGLGANAESLKWFKESE 71
Query: 166 ILHARWAMLGALGALVPEVL 185
++H RWAM G LV E++
Sbjct: 72 LVHCRWAMAAVAGILVQEIV 91
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL 106
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL 106
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 85 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGD 143
+Q + T+ A + SS+ +A R+ + Y RP W G P P++L G LPGD
Sbjct: 1 MQASLAPTRVALGRTSSRVQA----RRSAVVVYAASRPLWQPGVTP---PAHLDGTLPGD 53
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGY 203
+GFD L + A Y N E+ + RWAMLG G + P L VG ++ P W G
Sbjct: 54 FGFDPLNLGVNKEALDWYRNAELQNGRWAMLGVAGIIFPAELTRVGLLNV--PDWADAGK 111
Query: 204 SKLQGET 210
+ E
Sbjct: 112 VYAESEN 118
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 25/121 (20%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFN--- 163
A+Q + LW+ ++ SYL G LPGDYGFD GLS DP +
Sbjct: 48 AKQGADRQLWFASKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPSW 96
Query: 164 ---FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VWWRVGYSKLQGETLDYLGI 216
EI++ R+AMLGA+GA+ PE+L G L+ P W++ G G T DY
Sbjct: 97 LAYGEIINGRYAMLGAVGAIAPEILGKAG---LIPPETALPWFKTGVIPPAG-TYDYWAD 152
Query: 217 P 217
P
Sbjct: 153 P 153
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L G +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEAL---GLGN 112
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + + G YLG P
Sbjct: 113 WVKAQEW----AAVPGGQATYLGAP 133
>gi|157965825|gb|ABW06949.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 342
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 119 EERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
+ RP W P Y PS+LTG+ GD GFD AGL+ DP F++ E+ H R AML +
Sbjct: 162 DRRPLWF---PGGYAPSWLTGQHFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLAIV 218
Query: 178 GALVPEV 184
GA+VP++
Sbjct: 219 GAVVPDI 225
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
GL+KDP +Q+ E+ H R AMLG +G + PE+ GA
Sbjct: 2 GLAKDPKVYQRMRISEVFHGRLAMLGIVGCVAPELFFSKGA 42
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 115
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E ++ + G YLG P
Sbjct: 116 AQE-------WAAVPGGQATYLGAP 133
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 44 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL 98
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P+YL G LPG +GFD GL P Q++ E++H+RWAM G GAL E+L
Sbjct: 42 DTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELLG---- 96
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLGIP 217
+ W++ + G YLGIP
Sbjct: 97 ----QGDWYQAPLWAVNGGAPTYLGIP 119
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
D P++L +LPG+YGFD L K+P + +++ E++H RWAMLG G+L E+L
Sbjct: 40 DAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELL 94
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL 110
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL 114
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 110 ARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILH 168
AR + RP WL G P P++L GELPGD+GFD GL +P + + + E++H
Sbjct: 17 ARRSVVAKASSRPLWLPGSTP---PAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVH 73
Query: 169 ARWAMLGALGALVPEVL 185
+RWAM G LV E++
Sbjct: 74 SRWAMAAVAGILVQEIV 90
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWF--ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVG 202
+ EI++ R+AMLGA+GA+ PE+L G + W+R G
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTG 141
>gi|207853206|gb|ACI25388.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853210|gb|ACI25390.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853212|gb|ACI25391.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853214|gb|ACI25392.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853216|gb|ACI25393.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PEV +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIINV--PKWY 58
Query: 200 RVG 202
G
Sbjct: 59 DAG 61
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PEVL
Sbjct: 96 TYLDGTLPGDFGFDPLGMS-DPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGG 154
Query: 188 VGAFHL-VEPVWWRVGYSKLQGETLDYLGIP 217
+G VW++ G QG T DY P
Sbjct: 155 MGIIPADTGLVWFKSGAIPPQG-TFDYWADP 184
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G L GD GFD L++DP + + ++++ RWAMLG G L+PEVL G +
Sbjct: 43 PAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMN 102
Query: 193 LVEPVWWRV 201
P W R+
Sbjct: 103 --APEWLRL 109
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWF--ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVG 202
+ EI++ R+AMLGA+GA+ PE+L G + W+R G
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTG 141
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWF--ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVG 202
+ EI++ R+AMLGA+GA+ PE+L G + W+R G
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTG 141
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL 111
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 21/130 (16%)
Query: 83 ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPG 142
++L +R L++ + SS F + R A + G +RP W +YL G LPG
Sbjct: 20 QILGSRPLQSPS---RKSSSF--VVRAASTPPVKQGADRPLWF--ASKQSLTYLDGSLPG 72
Query: 143 DYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196
DYGFD GLS DP + E+++ R+AMLGA+GA+ PE+L +G L+ P
Sbjct: 73 DYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLG---LIPP 128
Query: 197 ----VWWRVG 202
W++ G
Sbjct: 129 ETALPWFKTG 138
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 31/49 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
PS+L G LPGDYGFD GL KDP + Y EI+H RWAM LG V
Sbjct: 38 PSWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEIIHGRWAMAAVLGIFV 86
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL 109
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ EI H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL 111
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 121 RPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGA 179
RP + G P P +L G + GDYGFD GL +D +A Q Y E++HARWAMLG G
Sbjct: 42 RPNFFPGSTP---PKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAGM 98
Query: 180 LVPEVL 185
PE++
Sbjct: 99 AAPELV 104
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF 117
>gi|157965827|gb|ABW06950.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 610
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 77 ANSPLGELLQN--RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPS 134
A P+ L+++ L A D A + +W+ P P+
Sbjct: 399 AQGPVANLMEHLRHPLAANIGANHDQWPVAMFATTGHKDGVWFPGATP----------PA 448
Query: 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
+LTGE P D GFD L+ DP + + E+ HAR +ML +GA+VPEVL
Sbjct: 449 HLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVL 499
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P++LTGE P D GFD L+ DP + + E+ HAR +ML +GA+VPEVL
Sbjct: 76 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVL 128
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P+YLTGE P D GFD AGL+ DP +++ E+ + R AML +G + PE+L
Sbjct: 259 PAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGCVYPELL 311
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P YL G PGD+GFD GL + P +++ E++H RWAML G LVPE L +
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL 111
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
L +++ +A S F+ A ++ LW + PSYL GEL GD
Sbjct: 15 LTGRKVVSKARAGPAPRSTFQVSAAASQGRRLWAPG----------VEAPSYLNGELAGD 64
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
YG+D GL P A + Y E++HARWAML G L E++
Sbjct: 65 YGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIV 106
>gi|207853270|gb|ACI25420.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y ++++ RWAMLG +G L+PEVL +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAKLVNGRWAMLGVVGMLLPEVLTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 107 ARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFE 165
AR AR + RP WL G P P++L G+LPGD+GFD GL + + + + E
Sbjct: 15 ARSARRSVVAKASSRPLWLPGSTP---PAHLKGDLPGDFGFDPLGLGANAESLKWFKESE 71
Query: 166 ILHARWAMLGALGALVPEVL 185
++H+RWAM G LV E++
Sbjct: 72 LVHSRWAMAAVAGILVQEIV 91
>gi|207853242|gb|ACI25406.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWW 199
LPGD GFD GL++DP + Y E+++ RWAMLG +G L+PE L +G ++ P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIINV--PKWY 58
Query: 200 RVGYSK 205
G ++
Sbjct: 59 DAGKAE 64
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL P F+++ E+ H RWAML G LVPE L +
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E ++ + G Y G+P
Sbjct: 117 AQE-------WAAVPGGQATYFGVP 134
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMV 188
YL G LPGD+GFD GL DP + E++H RWAMLG G L PEVL +
Sbjct: 63 YLDGTLPGDFGFDPLGLC-DPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATI 121
Query: 189 GAFHLV--EPVWWRVG 202
GA E VW+R G
Sbjct: 122 GAIPASPEEAVWFRSG 137
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P++L G PGD+GFD GL+ P F+++ E+ H RWAML G LVPE L +
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL 61
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PE+L
Sbjct: 80 AYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGG 138
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIP 217
+G VW+ G QG T DY P
Sbjct: 139 MGVIPESTGLVWFTSGAIPPQG-TFDYWANP 168
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PSYL G PGD+GFD L + P +++ E++H RWAML G LVPE L G +
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL---GLGN 112
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 113 WVKAQEW----AALPGGQATYLGNP 133
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
P YL G LPGD+GFD L +P + Y E++HAR+AML G LVPE+L +G
Sbjct: 68 PGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
>gi|145079211|tpg|DAA05904.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Acetabularia acetabulum]
Length = 202
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNE---SLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
NR + A + S+ ALA+ R + LW+ E+ SYL G L GD
Sbjct: 28 NRSYKFSVRAEEQSTDL-ALAKSERTKLGTDLWFASEQSL----------SYLDGSLAGD 76
Query: 144 YGFDVAGLSKDP-----MAFQKYFNF-EILHARWAMLGALGALVPEVLDMVGAF-HLVEP 196
+GFD GL DP + ++ + EI++ RWAMLGA G + PE L +GA
Sbjct: 77 FGFDPLGL-LDPEGAGGLVTPEWLKYAEIMNGRWAMLGAAGCIAPEFLGKLGAIPESTAL 135
Query: 197 VWWRVGYSKLQGETLDYLG 215
+WW+ G G+T Y G
Sbjct: 136 IWWKSGVIPPAGDTDIYWG 154
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
P YL G LPGD+GFD L +P + Y E++HAR+AML G LVPE+L +G
Sbjct: 68 PGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
>gi|242070955|ref|XP_002450754.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
gi|241936597|gb|EES09742.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
Length = 88
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGAL 177
G +RP WL + D P +L G LPGD+GFD GL +DP + + Y E++H R+AM G
Sbjct: 25 GTQRPTWLPGL--DPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVA 82
Query: 178 GAL 180
G L
Sbjct: 83 GIL 85
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 105 ALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNF 164
+ARQ RP W P P++L G L GDYGFD L ++P + Y
Sbjct: 14 GVARQTPRSVRVKAATRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQA 71
Query: 165 EILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
E++H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 72 ELVHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF 117
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF 117
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 107 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEI 166
ARQA RP W P P++L G L GDYGFD L ++P + Y E+
Sbjct: 16 ARQAPRAVRAQAAVRPVWFPGNPP--PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAEL 73
Query: 167 LHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDY 213
+H R+AMLGA G ++ + VG L P W+ G ++ +D+
Sbjct: 74 VHGRFAMLGAAGIILTSIGAKVG---LGFPEWYDAGKVVVEKNNIDF 117
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P++L G PGD+GFD GL P F+++ E+ H RWAML G LVPE L +
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 84
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E ++ + G Y G+P
Sbjct: 85 AQE-------WAAVPGGQATYFGVP 102
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAAIPPVKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVG 202
+ EI++ R+AMLGA+GA+ PE+L G + W+R G
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTG 141
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
+YL G LPGD+GFD G+S DP + N E++H RWAMLG G + PE+L
Sbjct: 73 AYLDGTLPGDFGFDPLGMS-DPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGQ 131
Query: 188 VGAF-HLVEPVWWRVGYSKLQGETLDYLGIP 217
G VW+ G QG T DY P
Sbjct: 132 AGLIPESTGLVWFTSGAIPPQG-TFDYWANP 161
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E ++ + G YLG P
Sbjct: 115 AQE-------WAAIPGGQATYLGNP 132
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 131 DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190
D P+YL LP YGFD GL+K+ + Q++ E++H RWAMLGA G L EVL
Sbjct: 36 DTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAMLGAAGVLGVEVLGYGN- 93
Query: 191 FHLVEPVWWRVGYSKLQGETLDYLG 215
W+ +QG + Y G
Sbjct: 94 -------WYDAPLPLVQGGSATYFG 111
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 81 LGELLQ-NRMLETKKAALQDSSKFKALAR----QARNESLWYGEERPRWLGPIPYDYPSY 135
+ +++Q + L +K A++ ++ KA A+ + N +W+ PR ++
Sbjct: 2 VSQMIQASTFLGSKVASVARATPAKAQAKFVVSASSNRPVWFPGNAPR----------AW 51
Query: 136 LTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
L G LPGD+G+D GLS DP + E+ +ARWAMLG G L ++ + VG
Sbjct: 52 LDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVG 105
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 101 SKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQK 160
S +L QA N LW + P++L G LPGD+GFD GL DP +
Sbjct: 38 SARASLKVQAANRELWLKDSTV---------APAHLDGTLPGDFGFDPLGLGADPERLKY 88
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVG 189
Y E+++ARWAM+ G E+L + G
Sbjct: 89 YQEAELMNARWAMMAVAGICTTEILGIGG 117
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|361068309|gb|AEW08466.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P
Sbjct: 2 KNRELEVIHSRWAMLGALGCVFPELLAKTGV-KFGEAVWFKAGAQIFSEGGLDYLGNP-- 58
Query: 220 HLAGSQGVIVIAICQALLM 238
+L +Q ++ I CQ +LM
Sbjct: 59 NLIHAQSILAIWACQVVLM 77
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE L+ GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALG 178
ERP W P +L G LPGDYGFD G P + + + E++HARWAMLG G
Sbjct: 52 SERPLWYPGT--KAPEWLNGSLPGDYGFDPVGFGSSPSSLRWMVHAELVHARWAMLGVAG 109
Query: 179 ALVPEVLDMVGAFHLVEPVWWRVG 202
L E++ + P W+ G
Sbjct: 110 VLGQELVHVTNG---SIPHWYEAG 130
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 89 MLETKKAALQDSSKFKALAR----QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDY 144
L +K A++ ++ KA A+ + N +W+ PR ++L G LPGD+
Sbjct: 7 FLGSKVASVARATPAKAQAKFVVSASSNRPVWFPGNAPR----------AWLDGSLPGDF 56
Query: 145 GFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
G+D GLS DP + E+ +ARWAMLG G L ++ + VG
Sbjct: 57 GYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVG 101
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE++HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGD+GFD GL KDP + Y E++H RWAML LG V
Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV 121
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYD----YPSYLTGE 139
+L+N L ++A +S A R + ++ W+ D PS+L G
Sbjct: 14 VLKNPFLGARRALANAASLGAAKPVTRRVVVVAAAADKKSWIPAFKSDAEFINPSWLDGS 73
Query: 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
LPGD+GFD GL KDP + Y E++H RWAM LG + + V F
Sbjct: 74 LPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFIGQAYSGVPWFE 126
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 110 ARNESLWYGEERPRWLGPIPYDY------PSYLTGELPGDYGFD--VAGLSKDPMAFQKY 161
AR + L YGE R ++L + P YLTGE+PGD G+D G +D M ++
Sbjct: 1234 ARVDDL-YGERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQRDIMKLRER 1292
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRV 201
E++H RWAML A+G LVPE + F WW
Sbjct: 1293 ---ELIHGRWAMLAAIGVLVPESTARLSLFGTPGQHWWNT 1329
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V
Sbjct: 72 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 120
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + EI++ R+AMLGA GA+ PE+
Sbjct: 70 SYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEIFGK 128
Query: 188 VGAF-HLVEPVWWRVG 202
+G VW++ G
Sbjct: 129 IGIIPQQTAVVWFKTG 144
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 20 QIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWF--ASSQSLSYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVG 189
GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG 124
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVL 185
SYL G LPGDYGFD GLS DP + N E++H RWAMLG GA PE +
Sbjct: 76 SYLDGTLPGDYGFDPLGLS-DPEGAGGFINPGWLAYAEVIHGRWAMLGVAGATAPETM 132
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 20 QIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWF--ASSQSLSYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVG 189
GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG 124
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P ++Y E++H RWAML G LVPE L +
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 71
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E ++ + G YLG P
Sbjct: 72 AQE-------WAAIPGGQATYLGNP 89
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 90 LETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVA 149
+ + A S+KF +A Q + + P G + P +L G LPGDYGFD
Sbjct: 31 IGANRTASGASTKFVVMAAQPKKSWI------PAVKGGGNFIDPEWLDGSLPGDYGFDPL 84
Query: 150 GLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
GL KDP + Y E++H RWAM +G V
Sbjct: 85 GLGKDPAFLKWYREAELIHGRWAMAAVIGIFV 116
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V
Sbjct: 73 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 121
>gi|168009690|ref|XP_001757538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009894|ref|XP_001757640.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691232|gb|EDQ77595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691334|gb|EDQ77697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 219
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL +DP A + Y E++H RWAM +G V
Sbjct: 31 PEWLDGSLPGDYGFDPLGLGRDPAALKWYREAELIHGRWAMAAVVGIFV 79
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ +K A K + + A + G RP W SYL G LPGDYGFD
Sbjct: 20 QIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFAS--SQSLSYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVG 189
GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG 124
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V
Sbjct: 73 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 121
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDM 187
SYL G LPGDYGFD GLS DP + EI++ R+AMLGA GA+ PE+
Sbjct: 70 SYLDGTLPGDYGFDPLGLS-DPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEIFGK 128
Query: 188 VGAF-HLVEPVWWRVG 202
+G VW++ G
Sbjct: 129 IGIIPQETAVVWFKTG 144
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 117
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
PS+L G LPGD+GFD GL KDP + Y E++H RWAM LG V + V F
Sbjct: 68 PSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAYSGVPWFE 127
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE+ HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 215
Y FE+ HARWAMLGA G ++PE + GA E VW++ G L G TL+Y G
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFG 55
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
VE W + + G YLG P
Sbjct: 114 WVEAQKW----AAIPGNQATYLGAP 134
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V + V
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV 123
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEAL---GLGN 113
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
VE W + + G YLG P
Sbjct: 114 WVEAQKW----AAIPGNQATYLGAP 134
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 117
>gi|383145055|gb|AFG54073.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145056|gb|AFG54074.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145057|gb|AFG54075.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145058|gb|AFG54076.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145059|gb|AFG54077.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145060|gb|AFG54078.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145061|gb|AFG54079.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145062|gb|AFG54080.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145063|gb|AFG54081.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145064|gb|AFG54082.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145065|gb|AFG54083.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145066|gb|AFG54084.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145067|gb|AFG54085.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145068|gb|AFG54086.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145069|gb|AFG54087.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145070|gb|AFG54088.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145071|gb|AFG54089.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145072|gb|AFG54090.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 160 KYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGL 219
K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P
Sbjct: 2 KNRELEVIHSRWAMLGALGCVFPELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP-- 58
Query: 220 HLAGSQGVIVIAICQALLM 238
+L +Q ++ I CQ +LM
Sbjct: 59 NLIHAQSILAIWACQVVLM 77
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Query: 134 SYLTGELPGDYGFDVAGLSKDPMAFQKYF-------NFEILHARWAMLGALGALVPEVLD 186
SYLTG LP DYGFD GL DP F E++HARWAMLGA G + PE+L
Sbjct: 34 SYLTGALPADYGFDPLGL-LDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILA 92
Query: 187 MVGAFHLV--EPVWWRVG 202
G E +W++ G
Sbjct: 93 TAGVIPQTPDEVIWFKSG 110
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 84 LLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGD 143
+ Q L + A +++ A+ A + +WY P++L G + GD
Sbjct: 2 IAQRSALSARSIATPKATRRSAVVAAAADRKMWYA--------------PAHLDGSIAGD 47
Query: 144 YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
YGFD GL +P + Y E+++ARWAM+ G + EV +EP WW G
Sbjct: 48 YGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTEVAG-------IEPRWWEAG 99
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187
P YL G PGD+GFD L + P ++Y E++H RWAML G L+PE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILIPEALGL 109
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ +K A K + + A + G RP W+ SYL G LPGDYGFD
Sbjct: 20 QIFGSKPVASASQKKSSFVVKAAAAPPVKQGANRPLWVAS--SQSLSYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVG 189
GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG 124
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
T+KA+ + +Q N LW+ ++ SYL G LPGD+GFD GL
Sbjct: 32 TRKASFVVRAASTPPVKQGANRQLWFASKQSL----------SYLDGSLPGDFGFDPLGL 81
Query: 152 SKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVG 189
S DP + E+++ R+AMLGA GA+ PE+L G
Sbjct: 82 S-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAG 124
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G PGD+GFD L P ++Y E++H RWAML G L+PE L G +
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEAL---GLGN 112
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
VE W + + G Y G+P
Sbjct: 113 WVEAQKW----AAIPGSQATYFGVP 133
>gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type I [Malus x domestica]
Length = 147
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 58 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 117
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E ++ + G YLG P
Sbjct: 118 AQE-------WAAVPGGQATYLGNP 135
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 92 TKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGL 151
T+KA+ + +Q N LW+ ++ SYL G LPGD+GFD GL
Sbjct: 32 TRKASFVVRAASTPPVKQGANRQLWFASKQSL----------SYLDGRLPGDFGFDPLGL 81
Query: 152 SKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVG 189
S DP + E+++ R+AMLGA GA+ PE+L G
Sbjct: 82 S-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAG 124
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 59/124 (47%), Gaps = 30/124 (24%)
Query: 95 AALQDSSKF--KALA----RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDV 148
+A Q S F KA A +Q N LW+ + SYL G LPGDYGFD
Sbjct: 29 SASQKKSSFVVKATATPPVKQGANRPLWFASSQSL----------SYLDGSLPGDYGFDP 78
Query: 149 AGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEP----VW 198
GLS DP + EI++ R+AMLGA GA+ PE+L G L+ P W
Sbjct: 79 LGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG---LIPPETALPW 134
Query: 199 WRVG 202
++ G
Sbjct: 135 FQTG 138
>gi|157965823|gb|ABW06948.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 582
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P++LTGE P D GFD L+ DP + + E+ HAR +ML +GA+VPEVL
Sbjct: 46 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGAIVPEVL 98
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P+YLTGE P D GFD AGL+ DP +++ E+ + R AML +G + PE+L
Sbjct: 229 PAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGCVYPELL 281
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185
P++LTGE P D GFD L+ DP + + E+ HAR ML +GA+VPEVL
Sbjct: 419 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLCMLAIVGAIVPEVL 471
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L G +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL---GLGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP 132
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P YL G PGD+GFD L + P +++ E++H RWAML G LVPE L +
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVK 114
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
E ++ L G YLG P
Sbjct: 115 AQE-------WAALPGGQATYLGNP 132
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V
Sbjct: 64 PPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIFV 112
>gi|192764705|gb|ACF05896.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764725|gb|ACF05906.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 166 ILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQ 225
++H RWAMLGALG + PEVL+ EPVW++ G LDYLG P +L +Q
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP--NLVHAQ 58
Query: 226 GVIVIAICQALLM 238
++ + Q +LM
Sbjct: 59 SILAVLGFQVVLM 71
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM LG V
Sbjct: 62 PPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIFV 110
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 88 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFD 147
++ TK A K + + + G RP W +YL G LPGDYGFD
Sbjct: 20 QIFGTKPAVSTSRRKSSFVVKATSTPPVKQGANRPLWFASS--QSLTYLDGSLPGDYGFD 77
Query: 148 VAGLSKDPMAFQKYFN------FEILHARWAMLGALGALVPEVLDMVG 189
GLS DP + EI++ R+AMLGA GA+ PE+L G
Sbjct: 78 PLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAG 124
>gi|296081542|emb|CBI20065.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPE 183
P +L G LPGDYGFD GL KDP + Y E++H RWAM +G V +
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 119
>gi|192764577|gb|ACF05832.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALV 181
P +L G LPGDYGFD GL KDP + Y E++H RWAM +G V
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFV 83
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,916,878,400
Number of Sequences: 23463169
Number of extensions: 160651225
Number of successful extensions: 379330
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 376655
Number of HSP's gapped (non-prelim): 2149
length of query: 239
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 101
effective length of database: 9,121,278,045
effective search space: 921249082545
effective search space used: 921249082545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)