BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026395
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
+ ++ S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++
Sbjct: 8 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 67
Query: 168 HARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227
H RWAMLGALG + PE+L G E VW++ G LDYLG P L A Q +
Sbjct: 68 HCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA--QSI 124
Query: 228 IVIAICQALLM 238
+ I CQ +LM
Sbjct: 125 LAIWACQVILM 135
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPV 197
FD GL+ DP AF + EI + R AM G V ++ G A HL +PV
Sbjct: 161 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 217
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 61
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG++ PE+L G E VW++ G LDYLG P L
Sbjct: 62 RELEVIHSRWAMLGALGSVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 121 A--QSILAIWATQVILM 135
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPV 197
FD GL+ DP AF + E+ + R AM G V ++ G A HL +PV
Sbjct: 161 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 217
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 102 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKY 161
K + A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKN 61
Query: 162 FNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHL 221
E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L
Sbjct: 62 RELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 222 AGSQGVIVIAICQALLM 238
A Q ++ I Q +LM
Sbjct: 121 A--QSILAIWATQVILM 135
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG-----AFHLVEPV 197
FD GL+ DP AF + E+ + R AM G V ++ G A HL +PV
Sbjct: 161 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 217
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 93 KKAALQDSSKFKALARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGL 151
+K + S+ + R +RP W G P P +L G LPGD+GFD GL
Sbjct: 36 RKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGL 92
Query: 152 SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
DP + + E++H+RWAMLGA G +PE L +G L P W+ G
Sbjct: 93 GSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI--LNTPSWYTAG 141
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 87 NRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGF 146
NR + + S+ FK A++ WL + P YLTG LPGD GF
Sbjct: 31 NRGVAFRPVGCSPSASFKVEAKKGE------------WLPGL--ASPGYLTGSLPGDNGF 76
Query: 147 DVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
D GL++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G
Sbjct: 77 DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAG 130
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P +L G LPGD+GFD GLS DP + + E++H+RWAMLGA G +PE L +G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-- 58
Query: 193 LVEPVWWRVGYSKLQGET 210
L P W+ G + +T
Sbjct: 59 LNTPSWYTAGEQEYFTDT 76
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 111
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 112 WVKAQEW----AALPGGQATYLGNP 132
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192
P+YL G PGD+GFD GL + P ++Y E++H RWAML G LVPE L G +
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN 63
Query: 193 LVEPVWWRVGYSKLQGETLDYLGIP 217
V+ W + L G YLG P
Sbjct: 64 WVKAQEW----AALPGGQATYLGNP 84
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 100 SSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQ 159
S K L + A + G +RP W SYL G LPGDYGFD GLS DP
Sbjct: 35 SRKASFLVKAAATPPVKQGSDRPLWF--ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTG 91
Query: 160 KYFN------FEILHARWAMLGALGALVPEVLDMVGAFHLVEPV-WWRVGY 203
+ EI++ R+AMLGA+GA+ PE+L G + W+R G+
Sbjct: 92 GFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGF 142
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF-----HLVE 195
PG F+ G KD + + E+ + R AML LG V ++ VG + HL +
Sbjct: 204 PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTD 263
Query: 196 PV 197
PV
Sbjct: 264 PV 265
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 141 PGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200
PGD+GFD GL + P ++Y E++H RWAML G LVPE L G + V+ W
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGNWVKAQEW- 58
Query: 201 VGYSKLQGETLDYLGIP 217
+ L G YLG P
Sbjct: 59 ---AALPGGQATYLGNP 72
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 151 LSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
L++DP + + E+++ RWAMLG G L+PEV +G ++ P W+ G
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAG 50
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 153 KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210
DP + + E++H+RWAMLGA G +PE L +G L P W+ G + +T
Sbjct: 1 SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI--LNTPSWYTAGEQEYFTDT 56
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 48/144 (33%), Gaps = 54/144 (37%)
Query: 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSK----------------------- 153
+ +RP W P YL G L GDYGFD GL K
Sbjct: 7 FSTDRPLWYPGA--KAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGD 64
Query: 154 --------------------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193
+ Q++ E++H RWAML LGAL E L +
Sbjct: 65 IIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI----- 119
Query: 194 VEPVWWRVGYSKLQGETLDYLGIP 217
W G +L E YLG P
Sbjct: 120 ---TWQDAGKVELI-EGSSYLGQP 139
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 146 FDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF-----HLVEPV 197
FD GL+ DP EI HAR AM+G LG V + G HL +P+
Sbjct: 178 FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPL 234
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 155 PMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 202
P + + E+++ RWAMLG G L+PEV +G ++ P W+ G
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAG 46
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 165 EILHARWAMLGALGALVPEVLDMVG 189
E+++ R+AMLGA+GA+ PE L VG
Sbjct: 19 EVINGRFAMLGAVGAIAPEYLGKVG 43
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 165 EILHARWAMLGALGALVPEVLDMVG 189
EI++ R+AMLGA GA+ PE+L G
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAG 30
>pdb|2WJA|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate.
pdb|2WJA|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Phosphate
Length = 168
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNES 114
L+F +I I SP+GE L R+L +KK +S+ AL A +ES
Sbjct: 24 LMFDSILVICTGNICRSPIGERLLRRLLPSKKI---NSAGVGALVDHAADES 72
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 135 YLTGELPGDYGFDVAGL-----SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189
Y +LPG GFD+ G+ D AF+ F E + + W G G LV EVLD G
Sbjct: 419 YKVEDLPGIDGFDILGIPLPENQTDDAAFET-FCREAVASYWHYHG--GCLVGEVLD--G 473
Query: 190 AFHLVEPVWWRVGYSKLQGETLDY 213
F + RV + G T Y
Sbjct: 474 DFRVTGINALRV----VDGSTFPY 493
>pdb|2WMY|A Chain A, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|B Chain B, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|C Chain C, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|D Chain D, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|E Chain E, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|F Chain F, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|G Chain G, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate.
pdb|2WMY|H Chain H, Crystal Structure Of The Tyrosine Phosphatase Wzb From
Escherichia Coli K30 In Complex With Sulphate
Length = 150
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 63 LVFSAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNES 114
L+F +I I SP+GE L R+L +KK +S+ AL +ES
Sbjct: 6 LMFDSILVICTGNICRSPIGERLLRRLLPSKKI---NSAGVGALVDHTADES 54
>pdb|2VX4|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Native Form
pdb|2VX6|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Gal1man4-Bound
Form
Length = 396
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 66 SAIPFTAVKAIANSPLGELLQNRMLETKKAALQDS---SKFKALAR---QARNESLWYGE 119
S P + A+A+S Q+ ET AL D+ ++ +AL R + R + L +G
Sbjct: 2 SEKPAESAAAVADSATTTAPQSGKPETALPALIDTQATAETRALYRNLAKLRYKHLLFGH 61
Query: 120 ERP-----RWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEIL 167
E W G + +TG P YG+++ GL A NFE +
Sbjct: 62 EDSLAYGVHWEGDMDRSDVRDVTGANPAVYGWELGGLELGHTANLDAVNFEKM 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,614,543
Number of Sequences: 62578
Number of extensions: 264142
Number of successful extensions: 627
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 36
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)