Query 026395
Match_columns 239
No_of_seqs 204 out of 843
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00171 photosystem light-ha 100.0 1.3E-65 2.9E-70 472.4 16.2 220 18-239 6-226 (324)
2 PLN00025 photosystem II light 100.0 2.8E-39 6.1E-44 291.3 7.3 125 112-239 42-166 (262)
3 PLN00187 photosystem II light- 100.0 1E-33 2.2E-38 257.9 5.7 113 111-239 42-197 (286)
4 PLN00048 photosystem I light h 100.0 3.1E-30 6.8E-35 232.7 7.5 113 113-239 34-153 (262)
5 PLN00098 light-harvesting comp 100.0 4.7E-30 1E-34 232.1 6.9 107 112-239 53-159 (267)
6 PLN00097 photosystem I light h 100.0 1.6E-29 3.4E-34 226.3 6.5 102 118-239 41-142 (244)
7 PLN00101 Photosystem I light-h 99.9 1.9E-28 4.1E-33 220.0 6.4 106 113-239 45-150 (250)
8 PLN00147 light-harvesting comp 99.9 1.8E-27 3.8E-32 213.9 8.4 90 113-206 37-126 (252)
9 PLN00099 light-harvesting comp 99.9 1.7E-27 3.7E-32 213.0 7.3 107 119-239 42-149 (243)
10 PLN00170 photosystem II light- 99.9 9.5E-27 2.1E-31 209.6 6.5 99 119-239 49-151 (255)
11 PLN00100 light-harvesting comp 99.9 5.7E-26 1.2E-30 203.7 5.9 77 118-204 32-108 (246)
12 PF00504 Chloroa_b-bind: Chlor 99.8 1.1E-20 2.3E-25 155.3 7.0 92 132-236 1-94 (156)
13 PLN00089 fucoxanthin-chlorophy 99.7 1.8E-17 4E-22 145.6 6.0 58 132-190 46-104 (209)
14 PLN00147 light-harvesting comp 99.6 1.2E-15 2.7E-20 137.6 5.2 59 133-191 172-230 (252)
15 PLN00089 fucoxanthin-chlorophy 99.6 2E-15 4.2E-20 132.9 5.3 54 138-191 153-207 (209)
16 PLN00048 photosystem I light h 99.5 4.2E-15 9E-20 134.8 4.0 55 137-191 186-240 (262)
17 PLN00025 photosystem II light 99.5 2.6E-14 5.7E-19 129.7 4.7 54 137-191 183-236 (262)
18 PLN00187 photosystem II light- 99.5 2.8E-14 6E-19 131.0 4.2 55 137-191 211-265 (286)
19 PLN00099 light-harvesting comp 99.4 6.8E-14 1.5E-18 125.8 4.7 53 138-191 164-217 (243)
20 PF00504 Chloroa_b-bind: Chlor 99.4 7.3E-14 1.6E-18 114.8 4.2 50 135-184 107-156 (156)
21 PLN00098 light-harvesting comp 99.4 1.2E-13 2.5E-18 125.8 4.9 54 138-191 191-245 (267)
22 PLN00171 photosystem light-ha 99.4 2.2E-13 4.7E-18 126.8 4.6 52 140-191 252-303 (324)
23 PLN00120 fucoxanthin-chlorophy 99.4 3.2E-13 6.9E-18 118.3 4.4 87 141-236 43-133 (202)
24 PLN00097 photosystem I light h 99.3 1.3E-12 2.9E-17 117.7 4.8 51 140-191 177-227 (244)
25 PLN00120 fucoxanthin-chlorophy 99.3 1.7E-12 3.7E-17 113.8 4.9 49 138-186 142-193 (202)
26 PLN00100 light-harvesting comp 99.3 2.5E-12 5.4E-17 116.1 3.7 49 139-192 143-191 (246)
27 PLN00101 Photosystem I light-h 99.2 1.3E-11 2.8E-16 111.6 3.4 48 139-191 183-230 (250)
28 PLN00170 photosystem II light- 99.2 2.2E-11 4.8E-16 110.4 4.2 48 139-187 190-246 (255)
29 PHA02337 putative high light i 97.6 4E-05 8.7E-10 51.3 2.3 29 162-190 3-31 (35)
30 PLN00014 light-harvesting-like 97.5 3.3E-05 7.1E-10 70.2 0.5 32 161-192 159-190 (250)
31 PLN00084 photosystem II subuni 95.1 0.01 2.2E-07 52.6 1.5 36 157-192 131-167 (214)
32 PF14672 LCE: Late cornified e 50.4 8.9 0.00019 30.3 1.3 11 18-28 23-33 (83)
No 1
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.3e-65 Score=472.36 Aligned_cols=220 Identities=77% Similarity=1.275 Sum_probs=205.6
Q ss_pred ccccCC-CCCcchhHHHhcCccccccccCCCCcchhhhhHhhhhhhheecccchhHHHHhhcCchhHHHHHhHHHhhHHh
Q 026395 18 SCCSSS-SGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAA 96 (239)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~p~ta~~a~a~s~fg~~l~~r~~~~k~~a 96 (239)
||-+|+ ++.-+++++++.++|++.. +++.+++|||||||+|||+||||+|||+++|||||+||++||+||+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (324)
T PLN00171 6 SSSSSSFSGQHSLPRILASKPRRRRA--TRRPASSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAA 83 (324)
T ss_pred cccccccccccccchhhccccccccc--cCCCCccchhhHHhhhheeeeecccHHHHHHHhcCcHHHHHHHHHHHhhHHH
Confidence 343333 3445789999999999988 7778899999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHhhcccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhh
Q 026395 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176 (239)
Q Consensus 97 ~~~a~~~~~~~~~a~~~s~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~ 176 (239)
+++++++++.++.+++.+.|||++|++|||++++++|+||||++||||||||+||++||+++++||++|||||||||||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~ 163 (324)
T PLN00171 84 VEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAA 163 (324)
T ss_pred HHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccCcccCCCcccccccccccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 177 lG~vv~Ell~~~G~i~~~~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
+|+++||++++.|++.+.+++||++|...++++.++|+++|++++++.|.+.+|.++|+++|+
T Consensus 164 ~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~ 226 (324)
T PLN00171 164 LGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMV 226 (324)
T ss_pred hhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhh
Confidence 999999999988887778899999999888888899999998877788999999999999985
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=291.29 Aligned_cols=125 Identities=50% Similarity=0.980 Sum_probs=116.8
Q ss_pred ccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 112 ~~s~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
+.+.|||+||++||||++.++|+||||++||||||||+||++||+++++||++||+||||||||++|+++||++++.| +
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g-~ 120 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG-V 120 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC-c
Confidence 577899999999999988889999999999999999999999999999999999999999999999999999998766 4
Q ss_pred cCCCcccccccccccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 192 ~~~~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
++++++||++|++.++.++++|+++|.+++ .|++.+++++|+++||
T Consensus 121 ~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~--~~~~~a~~~~qv~lmg 166 (262)
T PLN00025 121 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVH--AQSILAIWACQVVLMG 166 (262)
T ss_pred CcCcccccccccccccccccccccCcccch--hhhHHHHHHHHHHHHH
Confidence 677889999999988888999999998886 6889999999999996
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1e-33 Score=257.92 Aligned_cols=113 Identities=36% Similarity=0.669 Sum_probs=97.8
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHH---------------------------------
Q 026395 111 RNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA--------------------------------- 157 (239)
Q Consensus 111 ~~~s~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~--------------------------------- 157 (239)
...+.+|+++|++||+. .++|+||||++||||||||+||++|||.
T Consensus 42 ~~~~~~~~~~r~~w~p~--~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (286)
T PLN00187 42 KKKSSKVGADRPLWFPG--AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKST 119 (286)
T ss_pred ccCccCCCCCccccCCC--CCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhccccccccccccccccccc
Confidence 34678999999999986 4799999999999999999999999986
Q ss_pred ----------HHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcccCCCcccccccccccCCCcccccCCCcccccCcchh
Q 026395 158 ----------FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGV 227 (239)
Q Consensus 158 ----------~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~~~~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i 227 (239)
++|||++||+||||||||++||++||+++ |+ .||++|.+.+..+ .+|+|+|. ..++
T Consensus 120 ~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~------~W~~aG~~~~~~g-~~y~g~~~-----p~~~ 185 (286)
T PLN00187 120 PFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV------TWQDAGKVELVDG-SSYLGQPL-----PFSI 185 (286)
T ss_pred ccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC------ccccccccccccc-cccccccc-----chhH
Confidence 69999999999999999999999999985 43 4999998765433 57999983 2367
Q ss_pred HHHhhhhhhccC
Q 026395 228 IVIAICQALLMD 239 (239)
Q Consensus 228 ~aI~~~qvlLMg 239 (239)
.+++.+|++|||
T Consensus 186 ~~l~~iqvllmG 197 (286)
T PLN00187 186 TTLIWIEVLVIG 197 (286)
T ss_pred HHHHHHHHHHHH
Confidence 889999999997
No 4
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.96 E-value=3.1e-30 Score=232.67 Aligned_cols=113 Identities=36% Similarity=0.602 Sum_probs=94.2
Q ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChH------HHHHHHHHHHhhhhhHHHhhhhhhhhhhhc
Q 026395 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM------AFQKYFNFEILHARWAMLGALGALVPEVLD 186 (239)
Q Consensus 113 ~s~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe------~~~r~reaELkHGRwAMLA~lG~vv~Ell~ 186 (239)
....|+++|++|++. .++|+||||++||||||||+||+ ||+ +.+++|++||+||||||||++|+++||+++
T Consensus 34 ~~~~~~~~r~~w~p~--~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 34 PPAKQGADRQLWFAS--KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCCCceecCC--CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 456788999999975 47999999999999999999997 443 568899999999999999999999999999
Q ss_pred ccCcccCC-CcccccccccccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 187 MVGAFHLV-EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 187 ~~G~i~~~-~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
+.|+++.. ...||++|+.+ ..+..+|+++| .+++++|+++||
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~-~~~~~~y~~~p----------~~l~~~~~~lmg 153 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIP-PAGTYDYWADP----------YTLFVLEMALMG 153 (262)
T ss_pred cCCccccccccccccccccc-cccccccccch----------hHHHHHHHHHhh
Confidence 88887643 23699999743 34457899986 256778888886
No 5
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.96 E-value=4.7e-30 Score=232.10 Aligned_cols=107 Identities=35% Similarity=0.709 Sum_probs=91.4
Q ss_pred ccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 112 ~~s~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
....+|+++|++|+|+. ++|+||||++||||||||+||++|++++++||++|||||||||||++|+++||++++.|.+
T Consensus 53 ~~~~~~~~~r~~w~Pg~--~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~ 130 (267)
T PLN00098 53 SVCEPLPPDRPLWFPGS--SPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI 130 (267)
T ss_pred cccccCCCCccccCCCC--CCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence 34567999999999864 6999999999999999999999999999999999999999999999999999999887764
Q ss_pred cCCCcccccccccccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 192 ~~~~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
.++.||++|.. +|+++|. .++++|+++||
T Consensus 131 --~~~~w~~Ag~~-------~~~~~~~----------~l~~~q~~lmG 159 (267)
T PLN00098 131 --ENFSWYDAGAR-------EYFADPT----------TLFVVQMVLMG 159 (267)
T ss_pred --cccccccccch-------hhccCch----------HHHHHHHHHHH
Confidence 45679999863 5777762 34566777775
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.96 E-value=1.6e-29 Score=226.33 Aligned_cols=102 Identities=33% Similarity=0.607 Sum_probs=86.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcccCCCcc
Q 026395 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197 (239)
Q Consensus 118 g~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~~~~~v 197 (239)
+++|++|+|. .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||++++.|.+ ..++
T Consensus 41 ~~~R~~w~Pg--~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~--~~p~ 116 (244)
T PLN00097 41 AADRPTWLPG--KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA--DLPN 116 (244)
T ss_pred CCCCcccCCC--CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc--cCCc
Confidence 5899999975 46999999999999999999999999999999999999999999999999999999987763 3568
Q ss_pred cccccccccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 198 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 198 Wf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
||++|+.. .|+.. ..+++.+|++|||
T Consensus 117 W~~Ag~~~------~~~~~----------~~~l~~i~~~lmg 142 (244)
T PLN00097 117 WIDAAKWD------GYWAG----------AGPLFFIQMAMFN 142 (244)
T ss_pred cccCCcch------hcccc----------chhHHHHHHHHHH
Confidence 99998541 24431 1356778888885
No 7
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.95 E-value=1.9e-28 Score=220.02 Aligned_cols=106 Identities=34% Similarity=0.748 Sum_probs=90.6
Q ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCccc
Q 026395 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (239)
Q Consensus 113 ~s~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~ 192 (239)
.+.+++++|++|++.. ++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||++++.|.+
T Consensus 45 ~~~~~~~~r~~W~P~~--~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~- 121 (250)
T PLN00101 45 RSFKVEAKKGEWLPGL--ASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII- 121 (250)
T ss_pred ccccccccccccCCCC--CCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc-
Confidence 4567788999999764 6999999999999999999999999999999999999999999999999999999988875
Q ss_pred CCCcccccccccccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 193 ~~~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
..+.||++|+. +|++.+ ..++++|+++||
T Consensus 122 -~~p~w~~ag~~-------~~~~~~----------~~l~~ie~~~mg 150 (250)
T PLN00101 122 -NAPQWYDAGKA-------EYFASS----------STLFVIEFILFH 150 (250)
T ss_pred -CCCccccccch-------hhcccc----------hHHHHHHHHHHH
Confidence 35679999853 476544 256667777775
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.94 E-value=1.8e-27 Score=213.90 Aligned_cols=90 Identities=39% Similarity=0.749 Sum_probs=80.0
Q ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCccc
Q 026395 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (239)
Q Consensus 113 ~s~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~ 192 (239)
.+..++++|++|+|.. ++|+||||++||||||||+||++|++++++||++|||||||||||++|+++||+++..|.+
T Consensus 37 ~~~~~~~~R~~wlP~~--~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~- 113 (252)
T PLN00147 37 INPVVAQERPTWLPGL--DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR- 113 (252)
T ss_pred CcccCCCCccccCCCC--CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc-
Confidence 3457789999999864 6999999999999999999999999999999999999999999999999999999887764
Q ss_pred CCCccccccccccc
Q 026395 193 LVEPVWWRVGYSKL 206 (239)
Q Consensus 193 ~~~~vWf~aGa~~~ 206 (239)
..+.||++|..++
T Consensus 114 -~~p~w~~ag~~~~ 126 (252)
T PLN00147 114 -NLPVWYEAGAVKF 126 (252)
T ss_pred -CCcchhhcccchh
Confidence 3567999886543
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.94 E-value=1.7e-27 Score=212.98 Aligned_cols=107 Identities=33% Similarity=0.592 Sum_probs=89.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcccCCCccc
Q 026395 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198 (239)
Q Consensus 119 ~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~~~~~vW 198 (239)
++|..|++.. +.|+||||++||||||||+||+++++++++||++|||||||||||++|+++||+++. +.|
T Consensus 42 ~~~~~w~P~~--~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~--------~~w 111 (243)
T PLN00099 42 TMSADWMPGQ--PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--------GNW 111 (243)
T ss_pred cccccccCCC--CCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------CCc
Confidence 5667888754 599999999999999999999999999999999999999999999999999999752 248
Q ss_pred cccccc-ccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 199 WRVGYS-KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 199 f~aGa~-~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
|+++.. .+.++..+|+|+|-. ...+.+++.+|+++||
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~~----~~~l~~~~~iqvl~ig 149 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPVP----WGTLPTILAIEFLAIA 149 (243)
T ss_pred ccccchhccCcchhhhccCccc----hhhHHHHHHHHHHHHH
Confidence 888753 355666789998832 2357778888988875
No 10
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.93 E-value=9.5e-27 Score=209.57 Aligned_cols=99 Identities=33% Similarity=0.660 Sum_probs=82.9
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcccCC
Q 026395 119 EERPRWLGPIP----YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194 (239)
Q Consensus 119 ~~R~~wlg~~~----~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~~~ 194 (239)
.+|++|++... ...|+||||++||||||||+||++|++++++||++||+||||||||++||++||+++ |.
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g~---- 122 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GI---- 122 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--CC----
Confidence 56777887542 257999999999999999999999999999999999999999999999999999986 32
Q ss_pred CcccccccccccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 195 ~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
.||++|++. .|+. ..++.+|+++|++|||
T Consensus 123 --~w~~aG~~~------~~~~--------p~~~~~l~~~q~~lmg 151 (255)
T PLN00170 123 --PWFEAGADP------GAIA--------PFSFGSLLGTQLLLMG 151 (255)
T ss_pred --ChhhCCccc------cccC--------ccchHHHHHHHHHHhh
Confidence 499998752 1211 2457899999999997
No 11
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.92 E-value=5.7e-26 Score=203.72 Aligned_cols=77 Identities=32% Similarity=0.737 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcccCCCcc
Q 026395 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197 (239)
Q Consensus 118 g~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~~~~~v 197 (239)
..+|++|++. .+.|+||||++||||||||+||++|++++++||++||+||||||||++|+++||+++. |.
T Consensus 32 ~~~r~~W~P~--~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~--------P~ 101 (246)
T PLN00100 32 ARARPMWYPG--ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL--------PK 101 (246)
T ss_pred cCCCcccCCC--CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc--------cc
Confidence 3678899865 3699999999999999999999999999999999999999999999999999999752 35
Q ss_pred ccccccc
Q 026395 198 WWRVGYS 204 (239)
Q Consensus 198 Wf~aGa~ 204 (239)
||++|..
T Consensus 102 w~~ag~~ 108 (246)
T PLN00100 102 FWEAGAE 108 (246)
T ss_pred hhhcchh
Confidence 9998753
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.82 E-value=1.1e-20 Score=155.26 Aligned_cols=92 Identities=38% Similarity=0.622 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCccc-C-CCcccccccccccCCC
Q 026395 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH-L-VEPVWWRVGYSKLQGE 209 (239)
Q Consensus 132 ~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~-~-~~~vWf~aGa~~~~~~ 209 (239)
+|+||||+++||+||||+||++++ +++++|++||||||+||||++|++++|+++..+..+ + ..+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 499999999999999999999887 999999999999999999999999999987543321 1 2345776541
Q ss_pred cccccCCCcccccCcchhHHHhhhhhh
Q 026395 210 TLDYLGIPGLHLAGSQGVIVIAICQAL 236 (239)
Q Consensus 210 ~l~YlG~P~l~~ag~q~i~aI~~~qvl 236 (239)
++ .|.... .|.+++|.++|..
T Consensus 74 -~~---~~~~~~--~~~l~~ig~~e~~ 94 (156)
T PF00504_consen 74 -IP---VPAAGW--AQILLFIGALEPW 94 (156)
T ss_dssp -SS---SHSHHH--HHHHHHHHHHHHH
T ss_pred -hh---hhhHHH--HHHHHHHhHhhhh
Confidence 11 333222 3666666666654
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.70 E-value=1.8e-17 Score=145.62 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCcCccCCCCCC-ChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCc
Q 026395 132 YPSYLTGELPGDYGFDVAGLSK-DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190 (239)
Q Consensus 132 ~P~yL~G~~PGD~GFDPLGLs~-dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~ 190 (239)
.|..|+|. .||+||||+||++ +++++++||++||||||+||||++|+++||+++.+|.
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 36679999 9999999999985 6788999999999999999999999999999887664
No 14
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.58 E-value=1.2e-15 Score=137.62 Aligned_cols=59 Identities=29% Similarity=0.326 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 133 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 133 P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
+..+++.+|||++|||+||++|++++++++.+||||||+||+|++|+++|++++..|.+
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~ 230 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Confidence 34566779999999999999999999999999999999999999999999999977754
No 15
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.57 E-value=2e-15 Score=132.86 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=49.7
Q ss_pred CCCCCCcCccCCCC-CCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 138 GELPGDYGFDVAGL-SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 138 G~~PGD~GFDPLGL-s~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
+++||||||||+|| .+|+++++++|.+||+|||+||+|++|+++||++++.|.+
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 57899999999999 4689999999999999999999999999999999877653
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.53 E-value=4.2e-15 Score=134.80 Aligned_cols=55 Identities=29% Similarity=0.445 Sum_probs=51.0
Q ss_pred CCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 137 ~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
|..+|||++|||+||++|+|+++++|.+||+||||||+|++|+++|++++..|.+
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 3469999999999999999999999999999999999999999999999977654
No 17
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.48 E-value=2.6e-14 Score=129.70 Aligned_cols=54 Identities=31% Similarity=0.480 Sum_probs=50.3
Q ss_pred CCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 137 ~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
|..+|||+ |||+||++|++++++++.+|||||||||+|++|+++|++++..|.+
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPl 236 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 45799999 9999999999999999999999999999999999999999977654
No 18
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.47 E-value=2.8e-14 Score=130.96 Aligned_cols=55 Identities=35% Similarity=0.373 Sum_probs=50.6
Q ss_pred CCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 137 ~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
+..+|||++|||+||++|+++++++|.+|||||||||+|++|+++|++++..|.+
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 3458999999999999999999999999999999999999999999999876643
No 19
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.44 E-value=6.8e-14 Score=125.77 Aligned_cols=53 Identities=36% Similarity=0.547 Sum_probs=47.3
Q ss_pred CCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhh-hcccCcc
Q 026395 138 GELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV-LDMVGAF 191 (239)
Q Consensus 138 G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~El-l~~~G~i 191 (239)
+.+||| +|||+||++|++++++++.+||||||+||+|++|+++|+. ++..|.+
T Consensus 164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 479999 8999999999999999999999999999999999999995 5544543
No 20
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.44 E-value=7.3e-14 Score=114.84 Aligned_cols=50 Identities=38% Similarity=0.499 Sum_probs=46.4
Q ss_pred CCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhh
Q 026395 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184 (239)
Q Consensus 135 yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~El 184 (239)
+.++.+|||++|||+|+.+|+++.++++.+||+|||+||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999989999999999999999999999999999983
No 21
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.42 E-value=1.2e-13 Score=125.78 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=49.6
Q ss_pred CCCCCCcCccCCCCC-CChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 138 GELPGDYGFDVAGLS-KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 138 G~~PGD~GFDPLGLs-~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
..+|||++|||+||. +|++++++++.+||||||+||+|++|+++|++++..|.+
T Consensus 191 ~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl 245 (267)
T PLN00098 191 VGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 245 (267)
T ss_pred CCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChH
Confidence 468999999999997 489999999999999999999999999999999877654
No 22
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.39 E-value=2.2e-13 Score=126.85 Aligned_cols=52 Identities=38% Similarity=0.517 Sum_probs=47.1
Q ss_pred CCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 140 ~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
+||+++|||+||++|++++++++.+||||||+||+|++|+++|+++++.|.+
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPl 303 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 303 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChH
Confidence 4666679999999999999999999999999999999999999999866643
No 23
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.38 E-value=3.2e-13 Score=118.35 Aligned_cols=87 Identities=26% Similarity=0.341 Sum_probs=56.8
Q ss_pred CCCcCccCCCCC--CChHHHHHHHHHHHhhhhhHHHhhhhhhhhhh-hcccCcccCCCcccccccccccCCCccc-ccCC
Q 026395 141 PGDYGFDVAGLS--KDPMAFQKYFNFEILHARWAMLGALGALVPEV-LDMVGAFHLVEPVWWRVGYSKLQGETLD-YLGI 216 (239)
Q Consensus 141 PGD~GFDPLGLs--~dpe~~~r~reaELkHGRwAMLA~lG~vv~El-l~~~G~i~~~~~vWf~aGa~~~~~~~l~-YlG~ 216 (239)
|..+ |||+||+ .|++++++||++|||||||||||++|+++||+ ++.+|.+.+.. ..|.. .. ..+. .-..
T Consensus 43 p~g~-fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g-~~~~~---~p--~~~~a~~~v 115 (202)
T PLN00120 43 PLGF-FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSG-TSFSD---IP--NGFAALDAI 115 (202)
T ss_pred CCCC-CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCcccccc-ccccc---cc--cchhhhhhc
Confidence 4433 9999997 47899999999999999999999999999997 44444332111 12221 00 0111 1122
Q ss_pred CcccccCcchhHHHhhhhhh
Q 026395 217 PGLHLAGSQGVIVIAICQAL 236 (239)
Q Consensus 217 P~l~~ag~q~i~aI~~~qvl 236 (239)
|.... .|.+++|.++|+.
T Consensus 116 p~~g~--~qi~~~ig~~E~~ 133 (202)
T PLN00120 116 PTAGL--LQILAFIGFLELA 133 (202)
T ss_pred chhHH--HHHHHHHHHHHHH
Confidence 33222 4888888888875
No 24
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.32 E-value=1.3e-12 Score=117.65 Aligned_cols=51 Identities=29% Similarity=0.338 Sum_probs=45.9
Q ss_pred CCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 140 LPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 140 ~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
|||.. |||+||.+|++++++++.+||||||+||+|++|+++|++++..|.+
T Consensus 177 YPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl 227 (244)
T PLN00097 177 YPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPV 227 (244)
T ss_pred CCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHH
Confidence 44443 9999999999999999999999999999999999999999977754
No 25
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.31 E-value=1.7e-12 Score=113.81 Aligned_cols=49 Identities=31% Similarity=0.328 Sum_probs=39.0
Q ss_pred CCCCCCcCcc--CCCCC-CChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhc
Q 026395 138 GELPGDYGFD--VAGLS-KDPMAFQKYFNFEILHARWAMLGALGALVPEVLD 186 (239)
Q Consensus 138 G~~PGD~GFD--PLGLs-~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~ 186 (239)
+++||||+++ ++||. .|+++.+++|++||||||+||+|++|+++||+++
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~ 193 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLG 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4667754322 33333 2789999999999999999999999999999986
No 26
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.27 E-value=2.5e-12 Score=116.09 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=43.1
Q ss_pred CCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCccc
Q 026395 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (239)
Q Consensus 139 ~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~ 192 (239)
..||||+|||+||+. ++++.+||||||+||+|++|+++|++++..|.+.
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPle 191 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLE 191 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHH
Confidence 479999999999963 5688999999999999999999999998777553
No 27
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.17 E-value=1.3e-11 Score=111.65 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=41.2
Q ss_pred CCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 139 ~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
.|||+. ||||||++++ +++.+||||||+||+|++|+++|++++..|.+
T Consensus 183 ~YPGG~-FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi 230 (250)
T PLN00101 183 GYPGGI-FNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 230 (250)
T ss_pred cCCCCc-cCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence 367764 9999998653 68899999999999999999999999977654
No 28
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.16 E-value=2.2e-11 Score=110.42 Aligned_cols=48 Identities=31% Similarity=0.264 Sum_probs=43.4
Q ss_pred CCCCCcCccCCCCCC---------ChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcc
Q 026395 139 ELPGDYGFDVAGLSK---------DPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187 (239)
Q Consensus 139 ~~PGD~GFDPLGLs~---------dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~ 187 (239)
-+||+..|||+||++ |+++++++|.+||||||+||+|++|+++|. .+.
T Consensus 190 ~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g 246 (255)
T PLN00170 190 GYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQG 246 (255)
T ss_pred ccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccC
Confidence 479988899999985 789999999999999999999999999999 443
No 29
>PHA02337 putative high light inducible protein
Probab=97.61 E-value=4e-05 Score=51.28 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=26.0
Q ss_pred HHHHHhhhhhHHHhhhhhhhhhhhcccCc
Q 026395 162 FNFEILHARWAMLGALGALVPEVLDMVGA 190 (239)
Q Consensus 162 reaELkHGRwAMLA~lG~vv~Ell~~~G~ 190 (239)
..+|..|||+||+|++-.+..|+++.+++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 35899999999999999999999997764
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.46 E-value=3.3e-05 Score=70.24 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhHHHhhhhhhhhhhhcccCccc
Q 026395 161 YFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (239)
Q Consensus 161 ~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~ 192 (239)
+.++|+.|||+||+|++-.++.|+++..|++.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~ 190 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVD 190 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHH
Confidence 45689999999999999999999999888753
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=95.09 E-value=0.01 Score=52.60 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhhHHHhhhhhhhhhhhc-ccCccc
Q 026395 157 AFQKYFNFEILHARWAMLGALGALVPEVLD-MVGAFH 192 (239)
Q Consensus 157 ~~~r~reaELkHGRwAMLA~lG~vv~Ell~-~~G~i~ 192 (239)
..+..+..|+-|||+||||++-.++.|+++ ..|++.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~ 167 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLE 167 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 445566789999999999999999999999 777764
No 32
>PF14672 LCE: Late cornified envelope
Probab=50.42 E-value=8.9 Score=30.33 Aligned_cols=11 Identities=82% Similarity=1.724 Sum_probs=7.3
Q ss_pred ccccCCCCCcc
Q 026395 18 SCCSSSSGGCS 28 (239)
Q Consensus 18 ~~~~~~~~~~~ 28 (239)
+||.++||||-
T Consensus 23 sCC~~ssGgCc 33 (83)
T PF14672_consen 23 SCCGSSSGGCC 33 (83)
T ss_pred ccccCCCCCcc
Confidence 67776666663
Done!