Query 026395
Match_columns 239
No_of_seqs 204 out of 843
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 2.7E-40 9.4E-45 291.1 9.7 129 108-239 8-136 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 2E-32 6.9E-37 243.5 0.9 109 115-239 5-156 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 5.4E-30 1.9E-34 230.4 1.5 85 115-203 58-142 (269)
4 2wsc_3 LHCA3, type II chloroph 99.9 1.4E-29 4.7E-34 228.5 0.6 100 115-218 50-156 (276)
5 2wsc_4 Chlorophyll A-B binding 99.9 2.8E-29 9.4E-34 223.7 1.6 93 114-217 45-138 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 99.9 3.6E-26 1.2E-30 202.9 5.5 105 121-239 45-150 (241)
7 3pl9_A Chlorophyll A-B binding 99.4 2.5E-14 8.4E-19 127.5 3.5 52 139-191 172-223 (243)
8 2wsc_3 LHCA3, type II chloroph 99.4 1.4E-14 4.7E-19 130.9 1.7 55 137-191 200-254 (276)
9 2wsc_2 LHCA2, type II chloroph 99.4 7.4E-14 2.5E-18 125.7 4.5 55 137-191 192-247 (269)
10 2bhw_A Chlorophyll A-B binding 99.4 1.2E-13 4.2E-18 121.6 5.4 54 137-191 153-206 (232)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 8.3E-13 2.8E-17 117.3 2.0 54 137-191 164-218 (241)
12 2wsc_4 Chlorophyll A-B binding 99.1 1.6E-11 5.5E-16 109.4 2.3 47 139-191 183-229 (251)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.7e-40 Score=291.10 Aligned_cols=129 Identities=47% Similarity=0.896 Sum_probs=117.4
Q ss_pred HhhcccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcc
Q 026395 108 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDM 187 (239)
Q Consensus 108 ~~a~~~s~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~ 187 (239)
+++.+++.||+++|++|||+++.+.|+||||++||||||||+||++|+|+++|||++|||||||||||++|+++||++++
T Consensus 8 ~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 8 KVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp --CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 34456789999999999998877899999999999999999999999999999999999999999999999999999988
Q ss_pred cCcccCCCcccccccccccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 188 VGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 188 ~G~i~~~~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
.|+ .+++++||++|.+.++..+++|+++|.+.+ .|.|.+|+++|+++||
T Consensus 88 ~G~-~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~--~q~i~~~~~~q~~~~g 136 (232)
T 2bhw_A 88 NGV-KFGEAVWFKAGSQIFSEGGLDYLGNPSLVH--AQSILAIWATQVILMG 136 (232)
T ss_dssp TTC-CCSCCSGGGSGGGGGSTTCEEGGGCTTSEE--ECCHHHHHHHHHHHHH
T ss_pred CCc-CCcccccccccchhccccchhcccCcchhh--HHHHHHHHHHHHHHHH
Confidence 774 577889999999888877899999998875 7999999999999986
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.97 E-value=2e-32 Score=243.50 Aligned_cols=109 Identities=38% Similarity=0.678 Sum_probs=59.4
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChH--------------------------------------
Q 026395 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM-------------------------------------- 156 (239)
Q Consensus 115 ~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe-------------------------------------- 156 (239)
.+++++|++|++. .++|+||||++||||||||+||++|||
T Consensus 5 ~~~~~~r~~w~pg--~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYPG--AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC--CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 4667899999985 569999999999999999999999987
Q ss_pred -----HHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcccCCCcccccccccccCCCcccccCCCcccccCcchhHHHh
Q 026395 157 -----AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231 (239)
Q Consensus 157 -----~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~~~~~vWf~aGa~~~~~~~l~YlG~P~l~~ag~q~i~aI~ 231 (239)
+++|||++|||||||||||++|+++||+++ |+ +||++|++.+. ++++|+|+|. .++|.+++
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g~------~W~~aG~~~~~-~g~~y~g~p~-----~~~i~~l~ 148 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--GI------TWQDAGKVELI-EGSSYLGQPL-----PFSMTTLI 148 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SC------CTTTHHHHHHH-SCEEETTEEE-----CCCHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--Cc------ccccccccccc-cccccccCcc-----chhhHHHH
Confidence 378999999999999999999999999986 32 59999988765 3589999985 35788999
Q ss_pred hhhhhccC
Q 026395 232 ICQALLMD 239 (239)
Q Consensus 232 ~~qvlLMg 239 (239)
++|+++||
T Consensus 149 ~~qv~lmG 156 (243)
T 3pl9_A 149 WIEVLVIG 156 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999996
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.95 E-value=5.4e-30 Score=230.40 Aligned_cols=85 Identities=40% Similarity=0.834 Sum_probs=44.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcccCC
Q 026395 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194 (239)
Q Consensus 115 ~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~~~ 194 (239)
.+|+++|++||++ .++|+||||++||||||||+||++|+|++++||++|||||||||||++|+++||++++.|.+ .
T Consensus 58 ~~~~~~r~~wlpg--~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~--~ 133 (269)
T 2wsc_2 58 TVAEPDRPLWFPG--STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL--N 133 (269)
T ss_dssp --------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS--S
T ss_pred cccCCCcccccCC--CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc--c
Confidence 4799999999986 46999999999999999999999999999999999999999999999999999999988865 4
Q ss_pred Ccccccccc
Q 026395 195 EPVWWRVGY 203 (239)
Q Consensus 195 ~~vWf~aGa 203 (239)
.+.||++|.
T Consensus 134 ~p~w~~aG~ 142 (269)
T 2wsc_2 134 TPSWYTAGE 142 (269)
T ss_dssp CCCCCSTTS
T ss_pred Cccccccch
Confidence 577999764
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.95 E-value=1.4e-29 Score=228.46 Aligned_cols=100 Identities=39% Similarity=0.703 Sum_probs=52.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHH------HHHHHHHHhhhhhHHHhhhhhhhhhhhccc
Q 026395 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAF------QKYFNFEILHARWAMLGALGALVPEVLDMV 188 (239)
Q Consensus 115 ~wyg~~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~------~r~reaELkHGRwAMLA~lG~vv~Ell~~~ 188 (239)
..||++|++||| +.+.|+||||++||||||||+|| .|++++ +++|++||+||||||||++|++++|++++.
T Consensus 50 ~~~g~~R~~wlP--~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~ 126 (276)
T 2wsc_3 50 VKQGSDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126 (276)
T ss_dssp --------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSC
T ss_pred cccCCCccccCC--CCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccc
Confidence 349999999996 35799999999999999999999 688999 999999999999999999999999999988
Q ss_pred CcccCCCc-ccccccccccCCCcccccCCCc
Q 026395 189 GAFHLVEP-VWWRVGYSKLQGETLDYLGIPG 218 (239)
Q Consensus 189 G~i~~~~~-vWf~aGa~~~~~~~l~YlG~P~ 218 (239)
|+++...+ +||++|+.+ ..+.++|++++.
T Consensus 127 g~~~~~~p~~w~~~g~ip-~aG~~~~~~~~~ 156 (276)
T 2wsc_3 127 GLIPQETALPWFRTGFIP-PAGTYNYWADSY 156 (276)
T ss_dssp CCCCCSSCCSSSSCCCC------CCCSCCCC
T ss_pred ccccccCcchhhhhhccc-chhHHHHhccch
Confidence 87754444 499988754 344578998873
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.95 E-value=2.8e-29 Score=223.69 Aligned_cols=93 Identities=39% Similarity=0.801 Sum_probs=51.3
Q ss_pred CcccCC-CCCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCccc
Q 026395 114 SLWYGE-ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (239)
Q Consensus 114 s~wyg~-~R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~ 192 (239)
..+|+| +|++|+++ .+.|+||||++||||||||+||++|+|++++||++||+||||||||++|++++|+++..|++
T Consensus 45 ~~~~~~~~r~~~~pg--~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~- 121 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG--LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII- 121 (251)
T ss_dssp --------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS-
T ss_pred ccccCcchhhhccCC--CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc-
Confidence 358999 89999985 46999999999999999999999999999999999999999999999999999999988865
Q ss_pred CCCcccccccccccCCCcccccCCC
Q 026395 193 LVEPVWWRVGYSKLQGETLDYLGIP 217 (239)
Q Consensus 193 ~~~~vWf~aGa~~~~~~~l~YlG~P 217 (239)
..+.||++|. .+|++++
T Consensus 122 -~~p~w~~aG~-------~~~~~~~ 138 (251)
T 2wsc_4 122 -NVPKWYAAGK-------EEYFASS 138 (251)
T ss_dssp -CCCCCSCCCS-------SSCSSCS
T ss_pred -CCccccccch-------Hhhhccc
Confidence 4568999764 3578776
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.92 E-value=3.6e-26 Score=202.86 Aligned_cols=105 Identities=35% Similarity=0.634 Sum_probs=71.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcccCCCccccc
Q 026395 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200 (239)
Q Consensus 121 R~~wlg~~~~~~P~yL~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i~~~~~vWf~ 200 (239)
|++|++. .+.|+||||++||||||||+||++|+|+++|||++|||||||||||++|+++||+++. +.|++
T Consensus 45 ~~~w~P~--~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~~~~~ 114 (241)
T 2wsc_1 45 AAHWMPG--EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------GNWVK 114 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C----
T ss_pred ccccCCC--CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------Ccccc
Confidence 4567764 3589999999999999999999999999999999999999999999999999999853 24766
Q ss_pred cccc-ccCCCcccccCCCcccccCcchhHHHhhhhhhccC
Q 026395 201 VGYS-KLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMD 239 (239)
Q Consensus 201 aGa~-~~~~~~l~YlG~P~l~~ag~q~i~aI~~~qvlLMg 239 (239)
++.. .++++..+|+++|.. .+.+.+|+++|+++||
T Consensus 115 a~~~~~~~~g~a~~~~~~~~----~~~~~~i~~iq~l~ig 150 (241)
T 2wsc_1 115 AQEWAALPGGQATYLGNPVP----WGTLPTILAIEFLAIA 150 (241)
T ss_dssp -CCCCSCSSCSSCCSSSCSS----SSSHHHHHHHHHHHTH
T ss_pred ccchhccCCcchhhhcCcch----HHHHHHHHHHHHHHHH
Confidence 6532 355666789998732 3567888899999885
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.45 E-value=2.5e-14 Score=127.46 Aligned_cols=52 Identities=38% Similarity=0.470 Sum_probs=49.3
Q ss_pred CCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 139 ~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
.+|||+ |||+||++|+++++++|.+||+|||+||+|++|+++||+++..|.+
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 589999 9999999999999999999999999999999999999999977765
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.44 E-value=1.4e-14 Score=130.88 Aligned_cols=55 Identities=29% Similarity=0.430 Sum_probs=45.8
Q ss_pred CCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 137 ~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
|..+|||++|||+||++|+++++++|.+||+|||+||+|++|+++||+++..|.+
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~ 254 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPY 254 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCS
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChH
Confidence 4468999999999999888889999999999999999999999999999977654
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.42 E-value=7.4e-14 Score=125.72 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=50.1
Q ss_pred CCCCCCCcCccCCCCC-CChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 137 TGELPGDYGFDVAGLS-KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 137 ~G~~PGD~GFDPLGLs-~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
|..+|||+||||+||. .|+++++++|.+||+|||+||+|++|+++||+++..|.+
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l 247 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSS
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChH
Confidence 4478999999999997 478889999999999999999999999999999987765
No 10
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.41 E-value=1.2e-13 Score=121.57 Aligned_cols=54 Identities=31% Similarity=0.490 Sum_probs=50.1
Q ss_pred CCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 137 ~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
|+.+|||+ |||+||.+|+++++++|.+||+|||+||+|++|+++||+++..|.+
T Consensus 153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 45689999 9999999999999999999999999999999999999999977754
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.27 E-value=8.3e-13 Score=117.26 Aligned_cols=54 Identities=31% Similarity=0.458 Sum_probs=47.9
Q ss_pred CCCCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhh-hcccCcc
Q 026395 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV-LDMVGAF 191 (239)
Q Consensus 137 ~G~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~El-l~~~G~i 191 (239)
++.+||| +|||+||.+|+++++++|.+||+|||+||+|++|+++||. ++..|.+
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl 218 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence 4578999 5999999999999999999999999999999999999994 6765544
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.11 E-value=1.6e-11 Score=109.43 Aligned_cols=47 Identities=26% Similarity=0.375 Sum_probs=41.7
Q ss_pred CCCCCcCccCCCCCCChHHHHHHHHHHHhhhhhHHHhhhhhhhhhhhcccCcc
Q 026395 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (239)
Q Consensus 139 ~~PGD~GFDPLGLs~dpe~~~r~reaELkHGRwAMLA~lG~vv~Ell~~~G~i 191 (239)
.+|||+ |||+|+.+ ++++|.+||||||+ |+|++|+++||+++..|.+
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl 229 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHH
Confidence 479998 99999974 67789999999999 9999999999999866644
Done!