BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026399
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 296 bits (757), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 136/153 (88%), Positives = 149/153 (97%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
AE+ERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK+++P+K+FAQ+HYHDLKERPFF
Sbjct: 30 AELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFF 89
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
NGLC+FLSSGPVIAMVWEGEGVITYGRKLIGATDPQKS PGTIRGDLAVVVGRNIIHGSD
Sbjct: 90 NGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSD 149
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239
GPETAKDEIKLWFKPE+LV++TSN+EKW+Y N
Sbjct: 150 GPETAKDEIKLWFKPEELVSFTSNSEKWIYGDN 182
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 210 bits (534), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 120/153 (78%)
Query: 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERP 144
H A ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K + S++ ++HY DLK+RP
Sbjct: 20 HMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRP 79
Query: 145 FFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHG 204
FF GL +++ SGPV+AMVWEG V+ GR ++G T+P S+PGTIRGD + VGRNIIHG
Sbjct: 80 FFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 139
Query: 205 SDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
SD E+A+ EI LWF PE+LV+YTS A+ W+YE
Sbjct: 140 SDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 119/151 (78%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A ERTFIAIKPDGVQRGLI EII RFE+KGF+LVA+K + S++ ++HY DLK+RPFF
Sbjct: 2 ANSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFF 61
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
GL +++ SGPV+AMVWEG V+ GR ++G T+P S+PGTIRGD + VGRNIIHGSD
Sbjct: 62 AGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
E+A+ EI LWF PE+LVNY S A+ W+YE
Sbjct: 122 SVESAEKEIALWFHPEELVNYKSCAQNWIYE 152
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 121/151 (80%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K + S+E ++HY DLK+RPFF
Sbjct: 2 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFF 61
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
GL ++++SGPV+AMVWEG V+ GR ++G T+P S+PGTIRGD + VGRNIIHGSD
Sbjct: 62 PGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
++A+ EI LWFKPE+LV+Y S A WVYE
Sbjct: 122 SVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 120/151 (79%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K + S++ ++HY DLK+RPFF
Sbjct: 1 ANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFF 60
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
GL +++ SGPV+AMVWEG V+ GR ++G T+P S+PGTIRGD + VGRNIIHGSD
Sbjct: 61 AGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 120
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
E+A+ EI LWF+PE+LVNY S A+ W+YE
Sbjct: 121 SVESAEKEIALWFRPEELVNYKSCAQNWIYE 151
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 121/151 (80%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K + S+E ++HY DLK+RPFF
Sbjct: 1 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFF 60
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
GL ++++SGPV+AMVWEG V+ GR ++G T+P S+PGTIRGD + VGRNIIHGSD
Sbjct: 61 PGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 120
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
++A+ EI LWFKPE+LV+Y S A WVYE
Sbjct: 121 SVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 207 bits (526), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 119/151 (78%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K + S++ ++HY DLK+RPFF
Sbjct: 2 ANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFF 61
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
GL +++ SGPV+AMVWEG V+ GR ++G T+P S+PGTIRGD + VGRNIIHGSD
Sbjct: 62 AGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 121
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
E+A+ EI LWF PE+LV+YTS A+ W+YE
Sbjct: 122 SVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 120/151 (79%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K + S+E ++HY DLK+RPFF
Sbjct: 1 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFF 60
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
GL ++++SGPV+AMVWEG V+ G ++G T+P S+PGTIRGD + VGRNIIHGSD
Sbjct: 61 PGLVKYMNSGPVVAMVWEGLNVVKTGAVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 120
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
++A+ EI LWFKPE+LV+Y S A WVYE
Sbjct: 121 SVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/151 (60%), Positives = 118/151 (78%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K + S++ ++HY DLK+RPFF
Sbjct: 2 ANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFF 61
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
GL +++ SGPV+AMVWEG V+ GR ++G T+P S+PGTIRGD + VGRNIIHG D
Sbjct: 62 AGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGGD 121
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
E+A+ EI LWF PE+LV+YTS A+ W+YE
Sbjct: 122 SVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 202 bits (514), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 117/148 (79%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTFIA+KPDGVQR L+ EII RFE+KG+KLVA+K++ PS E AQ+HY DL +PF+ L
Sbjct: 10 ERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQPSAEQAQQHYIDLASKPFYKDL 69
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
+ SSGP++ MVWEG+GV+ GR L+GAT+P S PGTIRGD AV VGRN+ HGSD +
Sbjct: 70 VAYFSSGPIVGMVWEGKGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVD 129
Query: 210 TAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
+AK EI WFKPE+LVN+TS++ K VYE
Sbjct: 130 SAKREIAFWFKPEELVNWTSHSVKQVYE 157
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 118/151 (78%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K + S++ ++HY DLK+RP+F
Sbjct: 2 ANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPWF 61
Query: 147 NGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 206
GL +++ SGPV+AMVWEG V+ GR ++G T+P S+PGTIRGD + VGRNII GSD
Sbjct: 62 AGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIGGSD 121
Query: 207 GPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
E+A+ EI LWF PE+LV+YTS A+ W+YE
Sbjct: 122 SVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 114/152 (75%)
Query: 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPF 145
AA ERTFI +KPDGVQRGL+ +II RFE+KGFKLVA+K SKE +KHY DL RPF
Sbjct: 2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPF 61
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
F GL +++SGPV+ MVWEG V+ GR+++GAT+P S PGTIRGD + VGRNIIHGS
Sbjct: 62 FPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGS 121
Query: 206 DGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
D E+A+ EI LWF ++LV +T A+ W+YE
Sbjct: 122 DAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 116/148 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTFIA+KPDGVQRGL+ EII+RFERKG+KLVA+KI+ P+ E AQ HY DL +PFF L
Sbjct: 4 ERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPAL 63
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
++ SSGP++ MVWEG+ V+ GR L+GAT+P S+PGTIRGD AV VGRN+ HGSD E
Sbjct: 64 VKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQPGTIRGDFAVDVGRNVCHGSDSVE 123
Query: 210 TAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
+A+ EI WFK +++ ++TS++ +YE
Sbjct: 124 SAEREIAFWFKADEIASWTSHSVSQIYE 151
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 88/150 (58%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME+TFI IKPDGVQRGLI E+I RFE+KGF L +K++ + FA+KHY DL + FF+G
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L +++ SGPV+AM+WEG+ V+ GRK+IGAT+P SEPGTIRGD A+ +GRN+IHGSD
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120
Query: 209 ETAKDEIKLWFKPEDLVNYTSNAEKWVYES 238
E+A+ EI LWF P+ VN+ S+ WVYE+
Sbjct: 121 ESARKEIALWF-PDGPVNWQSSVHPWVYET 149
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 153
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 113/152 (74%)
Query: 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPF 145
AA ERTFI +KPDGVQRGL+ +II RFE+KGFKLVA+K SKE +KHY DL RPF
Sbjct: 2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPF 61
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
F GL +++SGPV+ MVWEG V+ GR+++GAT+P S PGTIRGD + VGRNII GS
Sbjct: 62 FPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIXGS 121
Query: 206 DGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
D E+A+ EI LWF ++LV +T A+ W+YE
Sbjct: 122 DAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 111/148 (75%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+ +KPDGVQRGL+ EIISRFER+GFKLVA+K VPSK ++HY + RPFF GL
Sbjct: 8 ERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGL 67
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
C+FLSSGPV AMVWEG V++ R ++G T P +S PGTIRGD + VGRNIIHGS +
Sbjct: 68 CKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLD 127
Query: 210 TAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
A EI LWFKPE++ +++ + E +YE
Sbjct: 128 DAAREIALWFKPEEVASWSCSLESHIYE 155
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 116/148 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTFIA+KPDGVQR L+ EII RFE KG+KLV +K++ P++E A++HY DL +PF++GL
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
+ SSGP++ MVWEG GV+ GR L+GAT+P S PGTIRGD AV VGRN+ HGSD E
Sbjct: 72 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVE 131
Query: 210 TAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
+AK EI WFK E+LV++TS++ K +YE
Sbjct: 132 SAKREIAFWFKAEELVSWTSHSVKQIYE 159
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 116/148 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTFIA+KPDGVQR L+ EII RFE KG+KLV +K++ P++E A++HY DL +PF++GL
Sbjct: 8 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 67
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
+ SSGP++ MVWEG GV+ GR L+GAT+P S PGTIRGD AV VGRN+ HGSD E
Sbjct: 68 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVE 127
Query: 210 TAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
+AK EI WFK E+LV++TS++ K +YE
Sbjct: 128 SAKREIAFWFKAEELVSWTSHSVKQIYE 155
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/150 (59%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME++FI IKPDGVQRGLI +IISRFE+KGF L +K + + FAQ+HY DL ++PFF G
Sbjct: 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 61
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L E++ SGPV+AMVWEG+ V+ GR++IGAT P ++ PGTIR D AV VGRN+IHGSD
Sbjct: 62 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 121
Query: 209 ETAKDEIKLWFKPEDLVNYTSNAEKWVYES 238
+ K EI LWF PE L + SN W+YES
Sbjct: 122 DNGKKEIALWF-PEGLAEWRSNLHPWIYES 150
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 109/150 (72%)
Query: 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFN 147
++E T+I +KPDG+QRGL+ EIISRFE+KGFKL+ +K+ KE A++HY DL + FF
Sbjct: 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 63
Query: 148 GLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDG 207
L E+++SGPV+ M WEG GV+ RKLIG TDP ++EPGTIRGDLAV GRNI+HGSD
Sbjct: 64 NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDS 123
Query: 208 PETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
PE K EI LWFK +L + S W+ E
Sbjct: 124 PENGKREIGLWFKEGELCKWDSALATWLRE 153
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 115/148 (77%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V S+E ++HY +L+ERPF+ L
Sbjct: 22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRL 81
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
++++SGPV+AMVW+G V+ R LIGAT+P + PGTIRGD + VG+N+IHGSD E
Sbjct: 82 VKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVE 141
Query: 210 TAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
+A+ EI LWF+ ++L+ + +A W+YE
Sbjct: 142 SARREIALWFRADELLCWEDSAGHWLYE 169
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 116/152 (76%)
Query: 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPF 145
+++ ERTFIA+KPDGVQRGL+S+I+SRFE+KG+KLVAIK+V + ++HY + +PF
Sbjct: 10 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPF 69
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
F + F+ SGP++A VWEG+ V+ GR ++GAT+P S PGTIRGD + +GRN+ HGS
Sbjct: 70 FPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGS 129
Query: 206 DGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
D ++A+ EI LWFK E+LV++ SN KW+YE
Sbjct: 130 DSVDSAEREINLWFKKEELVDWESNQAKWIYE 161
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 108/136 (79%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 8 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 67
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGRNIIHGSD E
Sbjct: 68 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 127
Query: 210 TAKDEIKLWFKPEDLV 225
+A EI LWFKPE+L+
Sbjct: 128 SANREIALWFKPEELL 143
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Complexed
With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 108/136 (79%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGRNIIHGSD E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLV 225
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 107/136 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+ PDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 9 ERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGRNIIHGSD E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLV 225
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 107/137 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGR IIHGSD E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRAIIHGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLVN 226
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELLT 145
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 107/136 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGRNII GSD E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLV 225
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 107/137 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 4 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+ S PG+IRGD V VGRNIIHGSD E
Sbjct: 64 VSFITSGPVVAMVFEGKGVVASARLMIGVTNSLASAPGSIRGDFGVDVGRNIIHGSDSVE 123
Query: 210 TAKDEIKLWFKPEDLVN 226
+A EI LWFKPE+L+
Sbjct: 124 SANREIALWFKPEELLT 140
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 107/136 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGRNII GSD E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLV 225
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 155
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 107/136 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGRNII GSD E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIXGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLV 225
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 107/136 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGRNII GSD E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIICGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLV 225
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 107/137 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 4 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S G+IRGD V VGRNIIHGSD E
Sbjct: 64 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSIRGDFGVDVGRNIIHGSDSVE 123
Query: 210 TAKDEIKLWFKPEDLVN 226
+A EI LWFKPE+L+
Sbjct: 124 SANREIALWFKPEELLT 140
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase
Length = 155
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 105/136 (77%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+A V+EG+GV+ R IG T+P S PG+IRGD V VGRNII GSD E
Sbjct: 69 VSFITSGPVVAXVFEGKGVVASARLXIGVTNPLASAPGSIRGDFGVDVGRNIIXGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLV 225
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|B Chain B, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|C Chain C, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|D Chain D, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|E Chain E, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|F Chain F, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
Length = 157
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 108/147 (73%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME++FI IKPDGVQRGL+ II RFE+KG+KL+AIK++ P++E ++HY +L ++PFF
Sbjct: 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 68
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L ++S GPV+AMVWEG ++ GRKLIG T+P S GTIRGD + V +N+IHGSD
Sbjct: 69 LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSV 128
Query: 209 ETAKDEIKLWFKPEDLVNYTSNAEKWV 235
+A EI +WFK E+L + + ++W+
Sbjct: 129 ASANKEINIWFKAEELTQWKHHMKEWI 155
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 107/137 (78%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERP+F GL
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPWFGGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+AMV+EG+GV+ R +IG T+P S PG+IRGD V VGR+II GSD E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRSIIGGSDSVE 128
Query: 210 TAKDEIKLWFKPEDLVN 226
+A EI LWFKPE+L+
Sbjct: 129 SANREIALWFKPEELLT 145
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 176 bits (447), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 110/148 (74%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME+TF+ +KPDGVQR I EI++RFE+KGF+LV K++ + E A +HY + +E+PFF
Sbjct: 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L +F++SGPV AMVW+GEGV+ R ++G T P ++ PGTIRGD V V +NIIHGSD
Sbjct: 61 LVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSL 120
Query: 209 ETAKDEIKLWFKPEDLVNYTSNAEKWVY 236
E+A+ EI ++FK E+LV+Y+ +W+Y
Sbjct: 121 ESAEREIGIFFKEEELVDYSKLMNEWIY 148
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 107/137 (78%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
MERTF+ IKPDGV+RGL+ EI++RFERKGF++ A+K++ S+E A++HY + +E+PFF G
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L F++SGPV+AMV EG GV+ RK++GAT P+ + PGTIRGD A + N+IHGS
Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120
Query: 209 ETAKDEIKLWFKPEDLV 225
E A+ EI L+F+PE+L+
Sbjct: 121 EDAQREIALFFRPEELL 137
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 104/149 (69%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
MERTF+ IKPD VQR LI E+ISR ERKG KLV K++ E A+ HY + + +PF+N
Sbjct: 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND 60
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L F++S PV AMV EGE + R +IG+T+P ++ PG+IRGDL + VGRNIIHGSD
Sbjct: 61 LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL 120
Query: 209 ETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
E+A+ EI LWF ++ +Y S + W+YE
Sbjct: 121 ESAEREINLWFNENEITSYASPRDAWLYE 149
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 110/155 (70%), Gaps = 2/155 (1%)
Query: 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERP 144
H +E ERTF+ +KPDGVQRGLI +I+SRFE +G K+V K + +E A++HY + +++P
Sbjct: 20 HMSEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKP 79
Query: 145 FFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHG 204
FF+GL +F++SGPV AMVWEG+ R ++G TDP +S PGTIRGD + +GRN+IHG
Sbjct: 80 FFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIHG 139
Query: 205 SDGPETAKD--EIKLWFKPEDLVNYTSNAEKWVYE 237
SD + + EI+L+F ++LV++ W+YE
Sbjct: 140 SDHEDEGANEREIELFFDEDELVDWDQIDSSWLYE 174
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
Length = 156
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 95/148 (64%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
MERT+I +KPDGVQRGLI EI+ RFE KG KL+A K P+ + +HY + K++PFF
Sbjct: 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKD 68
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
LC+F+S GPV M+WEG I GR L+G T P +S GTIRGD VV NI+H S
Sbjct: 69 LCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSA 128
Query: 209 ETAKDEIKLWFKPEDLVNYTSNAEKWVY 236
E A E LWF PE LV + + W+Y
Sbjct: 129 EDAARECALWFTPEQLVTWERSVGGWIY 156
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 100/143 (69%)
Query: 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERP 144
H ERT +A+KPDGVQR L+ ++I RFER+GF LV +K++ + +HY DL+ +P
Sbjct: 20 HMGTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKP 79
Query: 145 FFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHG 204
F+ L ++SSGPV+AMVWEG V+ R +IG TD ++ PGTIRGD +V + RN+IH
Sbjct: 80 FYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHA 139
Query: 205 SDGPETAKDEIKLWFKPEDLVNY 227
SD E A+ EI+LWF+ +LV++
Sbjct: 140 SDSVEGAQREIQLWFQSSELVSW 162
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/151 (49%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+ +KPDGVQRGLI +I++R E KG K+V K + +E A +HY + +++PFF+GL
Sbjct: 9 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 68
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV AMVWEG R+L+GATD Q + PGTIRGD +G N+IHGSD +
Sbjct: 69 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED 128
Query: 210 TAKD--EIKLWFKPEDLVNYTSNAEKWVYES 238
+ EI L+F ++LV++ +A WVYE
Sbjct: 129 EGANEREIALFFDDDELVDWDRDASAWVYED 159
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 74/151 (49%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+ +KPDGVQRGLI +I++R E KG K+V K + +E A +HY + +++PFF+GL
Sbjct: 26 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 85
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV AMVWEG R+L+GATD Q + PGTIRGD +G N+IHGSD +
Sbjct: 86 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED 145
Query: 210 TAKD--EIKLWFKPEDLVNYTSNAEKWVYES 238
+ EI L+F ++LV++ +A WVYE
Sbjct: 146 EGANEREIALFFDDDELVDWDRDASAWVYED 176
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 4/156 (2%)
Query: 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERP 144
+E ERT + IKPD V RGLI EIISRFE+KG K+V +K++ +E A+KHY + +E+P
Sbjct: 3 QMSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKP 62
Query: 145 FFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR---NI 201
FF L ++++ PV+ MV EG + RK+ GATDP+ + PGTIRGD + V N+
Sbjct: 63 FFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNV 122
Query: 202 IHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237
IH SD E+A+ EI L+FKPE+L Y A+ W Y+
Sbjct: 123 IHASDSKESAEREISLFFKPEELFEYPRAAD-WFYK 157
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
MERTFI IKPD ++R LIS II RFE KG L A K V+P +E + HY L PFF+
Sbjct: 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSE 64
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
+ E + SG V+AMVW G+ ++ GRKLIG T+PQ + GTIRGD V G+NIIHGSD
Sbjct: 65 MVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCV 124
Query: 209 ETAKDEIKLWFKPEDLVNYTSNAEKWVY 236
E A+ EIKLW +D+ + ++W+Y
Sbjct: 125 ENAEKEIKLWIG-DDVQPVSFFDKEWIY 151
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERT + IKPDG++R LI EIISR ERKG + A+++ S E A +HY + + +PFF L
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDP-QKSEPGTIRGDLAVVVGRNIIHGSDGP 208
EF++SGPV+A + EG I R+L G TDP Q + PGTIRGD A+ N++HGSD
Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSA 122
Query: 209 ETAKDEIKLWF 219
E+A+ EI LWF
Sbjct: 123 ESAQREIALWF 133
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
Length = 140
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 91/137 (66%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME+T IKPD V++G+I +I+ RFE G ++ A+K V SKE A+ Y KERPFF
Sbjct: 4 MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKD 63
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L EF+ SGPV+ + EGEG + R L+GAT+P++++ GTIR D A + N +HGSD
Sbjct: 64 LVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSL 123
Query: 209 ETAKDEIKLWFKPEDLV 225
E AK EI+ +FKP ++
Sbjct: 124 ENAKIEIEFFFKPNEIC 140
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 95/137 (69%), Gaps = 2/137 (1%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN LC+F+ SGP+I++V+EG I+ R+L G T+P S PGTIRGDLA +G N+IH S
Sbjct: 64 FNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHAS 123
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 124 DSEDSAVDEISIWF-PE 139
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 90/137 (65%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERT IKPD V + +I EI SRFE+ G K+VA K++ S+E A+ Y + KERPFF L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+ V EGE I R L+GAT+P+++E GTIR D A + N +HGSD PE
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPE 123
Query: 210 TAKDEIKLWFKPEDLVN 226
+A EI +F+ ++ +
Sbjct: 124 SAAREIAYFFEESEICS 140
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 89/137 (64%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERT IKPD V + +I EI SRFE+ G K+VA K++ S+E A+ Y + KERPFF L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
F++SGPV+ V EGE I R L+GAT+P+++E GTIR D A + N +HGSD PE
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPE 123
Query: 210 TAKDEIKLWFKPEDLVN 226
+A EI +F ++ +
Sbjct: 124 SAAREIAYFFAESEICS 140
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 94/137 (68%), Gaps = 2/137 (1%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN C+F+ SGP+I++V+EG I+ R+L G T+P S PGTIRGDLA +G N+IH S
Sbjct: 64 FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHAS 123
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 124 DSEDSAVDEISIWF-PE 139
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 94/137 (68%), Gaps = 2/137 (1%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN LC+F+ SGP+I++V+EG I+ R+L G T+P S PGTIRGDLA + N+IH S
Sbjct: 64 FNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHAS 123
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 124 DSEDSAVDEISIWF-PE 139
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERT IKPD V + +I +I SRFE G K+VA ++ S+ A+K Y ERPFF
Sbjct: 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKD 66
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L EF+ SGPV+ V EGE I R L+GATDP+K+E GTIR D A + N +HGSD P
Sbjct: 67 LVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAP 126
Query: 209 ETAKDEIKLWFKPE 222
ETA+ EI +F PE
Sbjct: 127 ETARVEIAFFF-PE 139
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 93/137 (67%), Gaps = 2/137 (1%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN C+F+ SGP+I++V+EG I+ R+L G T+P S PGTIRGDLA + N+IH S
Sbjct: 64 FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHAS 123
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 124 DSEDSAVDEISIWF-PE 139
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 91/139 (65%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERT IKPDG+++G+I +IISRFE KG K VAI++ S+ A+ Y K RPFF
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L +F+ SGPV+ MV EGE + R ++GAT+P ++ GTIR D A + +N +HGSD
Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121
Query: 209 ETAKDEIKLWFKPEDLVNY 227
E AK EI +F+ ++ +Y
Sbjct: 122 ENAKIEIAYFFRETEIHSY 140
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 85/130 (65%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+ +KPDGVQR L+ E++ RFE KG KL K++V SK+ A HY +L PFF GL
Sbjct: 3 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGL 62
Query: 150 CEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 209
+SGPV AMVWEG R+++GAT+P + PGTIRGD V GRN IHGSD
Sbjct: 63 VGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAG 122
Query: 210 TAKDEIKLWF 219
+A EI +F
Sbjct: 123 SAAKEIGAFF 132
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 91/137 (66%), Gaps = 6/137 (4%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN LC+F+ SGP+I++V+EG I+ R+L G PGTIRGDLA +G N+IH S
Sbjct: 64 FNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIGENLIHAS 119
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 120 DSEDSAVDEISIWF-PE 135
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 90/137 (65%), Gaps = 6/137 (4%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN C+F+ SGP+I++V+EG I+ R+L G PGTIRGDLA +G N+IH S
Sbjct: 64 FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIGENLIHAS 119
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 120 DSEDSAVDEISIWF-PE 135
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 90/137 (65%), Gaps = 6/137 (4%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN LC+F+ SGP+I++V+EG I+ R+L G PGTIRGDLA + N+IH S
Sbjct: 64 FNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHAS 119
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 120 DSEDSAVDEISIWF-PE 135
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 6/137 (4%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 19 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 78
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN C+F+ SGP+I++V+EG I+ R+L G PGTIRGDLA + N+IH S
Sbjct: 79 FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHAS 134
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 135 DSEDSAVDEISIWF-PE 150
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
Length = 142
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 6/137 (4%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPS-KEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 205
FN C+F+ SGP+I++V+EG I+ R+L G PGTIRGDLA + N+IH S
Sbjct: 64 FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHAS 119
Query: 206 DGPETAKDEIKLWFKPE 222
D ++A DEI +WF PE
Sbjct: 120 DSEDSAVDEISIWF-PE 135
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|B Chain B, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|C Chain C, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|D Chain D, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|E Chain E, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|F Chain F, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DZ6|A Chain A, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|B Chain B, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|C Chain C, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|D Chain D, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|E Chain E, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|F Chain F, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
Length = 190
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 15/159 (9%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKH--YHDLKER--- 143
+++T +KPDGV+RGLI +++SRFER G K+VA K+++ + A+KH Y D+ R
Sbjct: 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSE 85
Query: 144 PFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR---- 199
+N L +F+S+ PV V EG I RKL GAT+P+ + PGTIRGD + +
Sbjct: 86 AVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNE 145
Query: 200 ------NIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAE 232
N+IH S A EI +WFK +++NY + E
Sbjct: 146 KGFSIYNVIHASANEADAMREIPIWFKDNEILNYKRDDE 184
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 81/131 (61%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERTF IKP+ V + +I I +RFE GFK+V K++ + E A+ Y + +PFF+G
Sbjct: 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 208
L EF++SGP++ V EGE + R L+GAT+P + GT+R D A + N HGSD
Sbjct: 62 LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSV 121
Query: 209 ETAKDEIKLWF 219
E+A EI +F
Sbjct: 122 ESAAREIAYFF 132
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERT I +KPD +++G + +I+ RF ++GF++ A+K+ + E A + Y+ +ERPFF
Sbjct: 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQE 62
Query: 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQ---KSEPGTIRGDLAVVVGRNIIHGS 205
L EF+SSGPV+A V EGE I R++IG TD + K P +IR G+N IH S
Sbjct: 63 LVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHAS 122
Query: 206 DGPETAKDEIKLWFKPEDLV 225
D PE+A+ EI F ++V
Sbjct: 123 DSPESAQYEICFIFSGLEIV 142
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 43/180 (23%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE------ 142
+E+T + +KPD V RGL+ EIISRF++ G K+VA+K V S E ++ Y +E
Sbjct: 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYPSSEEWLQSAG 74
Query: 143 ---------------------------RPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKL 175
R L ++ +SGP + V +G + RKL
Sbjct: 75 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKL 134
Query: 176 IGATDPQKSEPGTIRG-------DLAVVVGR---NIIHGSDGPETAKDEIKLWFKPEDLV 225
+G T P + PGTIRG DLA GR N++H SD P A+ EI+ WF+ E+++
Sbjct: 135 VGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVL 194
>pdb|2BX6|A Chain A, Crystal Structure Of The Human Retinitis Pigmentosa
Protein 2 (Rp2)
Length = 350
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 103 RGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMV 162
R LI E++ KGF LV K V E AQ+ + + + P F L L+ GPVIA+
Sbjct: 251 RKLIDEMVG----KGFFLVQTKEVSMKAEDAQRVFRE--KAPDFLPL---LNKGPVIALE 301
Query: 163 WEGEGVITYGRKLIG 177
+ G+G + + ++
Sbjct: 302 FNGDGAVEVCQLIVN 316
>pdb|3BH6|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
pdb|3BH7|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 352
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 103 RGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMV 162
R LI E++ KGF LV K V E AQ+ + + + P F L L+ GPVIA+
Sbjct: 253 RKLIDEMVG----KGFFLVQTKEVSMKAEDAQRVFRE--KAPDFLPL---LNKGPVIALE 303
Query: 163 WEGEGVITYGRKLIG 177
+ G+G + + ++
Sbjct: 304 FNGDGAVEVCQLIVN 318
>pdb|1M65|A Chain A, Ycdx Protein
pdb|1M68|A Chain A, Ycdx Protein, Trinuclear Zinc Site
pdb|1PB0|A Chain A, Ycdx Protein In Autoinhibited State
pdb|1PB0|B Chain B, Ycdx Protein In Autoinhibited State
pdb|1PB0|C Chain C, Ycdx Protein In Autoinhibited State
Length = 245
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 106 ISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKER 143
+S+ I++ ++KG KL AI P E A H+H + R
Sbjct: 20 LSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMR 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,727,596
Number of Sequences: 62578
Number of extensions: 270622
Number of successful extensions: 750
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 75
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)