Query 026399
Match_columns 239
No_of_seqs 163 out of 1138
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02619 nucleoside-diphosphat 100.0 8.2E-74 1.8E-78 505.8 18.3 237 1-239 1-238 (238)
2 PTZ00093 nucleoside diphosphat 100.0 1.5E-49 3.3E-54 331.0 15.4 148 89-236 2-149 (149)
3 PRK14543 nucleoside diphosphat 100.0 7E-49 1.5E-53 333.1 14.9 151 87-237 3-168 (169)
4 PRK14542 nucleoside diphosphat 100.0 1.7E-48 3.6E-53 320.8 15.1 136 89-224 1-136 (137)
5 COG0105 Ndk Nucleoside diphosp 100.0 1.9E-48 4E-53 316.5 13.6 133 89-221 2-134 (135)
6 PRK14541 nucleoside diphosphat 100.0 4.4E-48 9.5E-53 319.3 15.1 138 89-226 1-138 (140)
7 PRK14545 nucleoside diphosphat 100.0 3.8E-47 8.3E-52 313.2 15.6 137 88-224 2-138 (139)
8 PRK14540 nucleoside diphosphat 100.0 2.4E-46 5.2E-51 306.6 15.4 133 89-221 2-134 (134)
9 PRK00668 ndk mulitfunctional n 100.0 4.5E-46 9.8E-51 304.3 14.9 134 89-222 1-134 (134)
10 PLN02931 nucleoside diphosphat 100.0 8.9E-46 1.9E-50 316.2 14.9 157 69-225 9-168 (177)
11 cd04415 NDPk7A Nucleoside diph 100.0 1.3E-45 2.8E-50 301.3 13.7 128 90-219 1-131 (131)
12 cd04418 NDPk5 Nucleoside dipho 100.0 4.8E-45 1E-49 298.0 14.1 129 90-220 1-132 (132)
13 cd04413 NDPk_I Nucleoside diph 100.0 6.4E-45 1.4E-49 296.2 14.7 130 90-219 1-130 (130)
14 PF00334 NDK: Nucleoside dipho 100.0 2.6E-45 5.7E-50 298.6 12.1 135 90-224 1-135 (135)
15 cd04414 NDPk6 Nucleoside dipho 100.0 1.1E-44 2.3E-49 297.1 14.4 131 90-220 1-135 (135)
16 cd04412 NDPk7B Nucleoside diph 100.0 1.2E-44 2.6E-49 296.1 14.3 130 90-219 1-134 (134)
17 cd00595 NDPk Nucleoside diphos 100.0 2.2E-44 4.9E-49 293.4 14.3 130 90-219 1-133 (133)
18 KOG0888 Nucleoside diphosphate 100.0 5.2E-45 1.1E-49 305.3 9.4 149 89-237 5-156 (156)
19 cd04416 NDPk_TX NDP kinase dom 100.0 2.7E-44 5.9E-49 293.0 13.1 129 90-219 1-132 (132)
20 smart00562 NDK These are enzym 100.0 6.3E-44 1.4E-48 290.7 14.7 134 90-223 1-134 (135)
21 PRK14544 nucleoside diphosphat 100.0 5.5E-43 1.2E-47 300.3 14.9 138 88-225 2-182 (183)
22 COG1799 Uncharacterized protei 46.3 42 0.0009 29.0 4.8 46 88-137 71-116 (167)
23 PF04472 DUF552: Protein of un 41.8 52 0.0011 23.8 4.2 44 93-140 1-44 (73)
24 TIGR00640 acid_CoA_mut_C methy 34.8 1.1E+02 0.0023 24.9 5.4 43 92-136 6-49 (132)
25 KOG0328 Predicted ATP-dependen 34.2 93 0.002 29.7 5.5 92 103-194 150-262 (400)
26 PF13673 Acetyltransf_10: Acet 32.1 1.8E+02 0.0039 21.2 6.0 46 91-140 67-115 (117)
27 cd06335 PBP1_ABC_ligand_bindin 28.1 2.4E+02 0.0053 25.4 7.2 74 90-176 138-214 (347)
28 PF14454 Prok_Ub: Prokaryotic 27.8 46 0.001 24.4 1.9 28 127-159 23-50 (65)
29 PF03162 Y_phosphatase2: Tyros 26.2 3.6E+02 0.0078 22.6 7.4 75 89-177 32-117 (164)
30 PF04273 DUF442: Putative phos 25.8 2.9E+02 0.0063 21.8 6.3 73 90-173 28-104 (110)
31 COG1844 Uncharacterized protei 25.0 1.4E+02 0.0031 24.5 4.4 79 91-179 1-82 (125)
32 PF01408 GFO_IDH_MocA: Oxidore 24.7 2E+02 0.0043 21.5 5.1 48 89-140 62-109 (120)
33 cd06355 PBP1_FmdD_like Peripla 24.2 3.7E+02 0.008 24.3 7.6 41 90-130 133-174 (348)
34 TIGR03738 PRTRC_C PRTRC system 24.2 39 0.00084 24.9 1.0 28 127-159 22-49 (66)
35 COG3473 Maleate cis-trans isom 22.8 1.5E+02 0.0032 26.9 4.5 60 70-131 98-157 (238)
36 TIGR02990 ectoine_eutA ectoine 22.6 2.4E+02 0.0052 25.2 5.9 67 71-139 101-176 (239)
37 COG4996 Predicted phosphatase 21.3 1E+02 0.0022 26.2 3.0 71 54-131 54-125 (164)
38 KOG3846 L-kynurenine hydrolase 20.0 1.1E+02 0.0025 29.4 3.4 53 70-122 163-217 (465)
No 1
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=8.2e-74 Score=505.84 Aligned_cols=237 Identities=86% Similarity=1.307 Sum_probs=233.6
Q ss_pred CchHHHHHhhHHHHHHhhhhhcccccccccchhhhhhhhhhccCCcchhhhhhcc-cCCcchhhhhhhhhhhhhhhhhhh
Q 026399 1 MSSQIVRSASRAATARSLLSASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGR-AGSSTASRSWLSGAIAIPAAAYTL 79 (239)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (239)
|+|||||+++|+ ||++++++++++++.+||++++++++++++|.|++++.|+. +++++++.+|+++++++||++||+
T Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (238)
T PLN02619 1 MSSQICRSASRA--ARSLLSSAKNASFLSEGRAVAAAAAVSAGGKPPLLASAFGRATGSSTASAQWISGALALPAAVYML 78 (238)
T ss_pred CchHHHHHHHHH--HHHHHHHHhhhhhhhcchHHHHHHHHHcCCCCchHHHHHHhhcCCCchHHHHHHHhhcchhhhhhc
Confidence 899999999999 99999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred hhhhhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEE
Q 026399 80 QEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVI 159 (239)
Q Consensus 80 ~~~~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvv 159 (239)
||++.+...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++
T Consensus 79 ~~~~~~a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvv 158 (238)
T PLN02619 79 QEQEAHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVV 158 (238)
T ss_pred cccccccchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCccccccCC
Q 026399 160 AMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239 (239)
Q Consensus 160 aL~L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~~~ 239 (239)
+|+|+|+|+|++||++||||||.++.|+|||++||.+.++|+|||||++|+|++||+|||+++|+.+|.++.++|+|++|
T Consensus 159 amvL~GenaV~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ei~~y~~~~~~~~y~~~ 238 (238)
T PLN02619 159 AMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSYTSNAEKWIYGVN 238 (238)
T ss_pred EEEEECCcHHHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHhccCCcccchhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=1.5e-49 Score=330.97 Aligned_cols=148 Identities=63% Similarity=1.159 Sum_probs=145.1
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
.|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+|+
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCccccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 236 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~ 236 (239)
|++||++|||+||..+.|+|||++||.+.++|+|||||++++|.+|++|||++.|+.+|..+.+.|+|
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~~~~~~~~~~~~~ 149 (149)
T PTZ00093 82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEELVSWTSHSSKWIY 149 (149)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhccCccccchhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 3
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=7e-49 Score=333.14 Aligned_cols=151 Identities=39% Similarity=0.677 Sum_probs=146.3
Q ss_pred hhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhh-----hhcCCCChHHHHHHHccCcEEEE
Q 026399 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYH-----DLKERPFFNGLCEFLSSGPVIAM 161 (239)
Q Consensus 87 ~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~-----~~~~k~~f~~Lv~~mtSGPvvaL 161 (239)
...|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||. +|++++||++|++||+|||+++|
T Consensus 3 ~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~val 82 (169)
T PRK14543 3 TLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVF 82 (169)
T ss_pred CccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEE
Confidence 4679999999999999999999999999999999999999999999999995 79999999999999999999999
Q ss_pred EEeecCHHHHHHHHhCCCCCCCCCCCCcccccccc----------cCccEEEcCCChhhHHHHHhhcCCCCCccccccCC
Q 026399 162 VWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVV----------VGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNA 231 (239)
Q Consensus 162 ~L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~----------~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~ 231 (239)
+|.|+|+|+.||++|||+||..+.|+|||++||.+ .++|+|||||++++|.|||+||||+.|+.+|...+
T Consensus 83 vl~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~~~~~~~ 162 (169)
T PRK14543 83 VVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEILTYKRDD 162 (169)
T ss_pred EEECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCccccccccccc
Confidence 99999999999999999999999999999999986 78999999999999999999999999999999999
Q ss_pred cccccc
Q 026399 232 EKWVYE 237 (239)
Q Consensus 232 ~~~~~~ 237 (239)
+.|+|-
T Consensus 163 ~~~~~~ 168 (169)
T PRK14543 163 ECEHYY 168 (169)
T ss_pred ceeEee
Confidence 999994
No 4
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.7e-48 Score=320.82 Aligned_cols=136 Identities=42% Similarity=0.715 Sum_probs=133.2
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+|+
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 224 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el 224 (239)
|++||++|||+||..+.|+|||++||.+.++|+|||||++++|++|+++||++.|+
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~~ 136 (137)
T PRK14542 81 VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNEL 136 (137)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHHHHHHHHHHcCChhhc
Confidence 99999999999999999999999999999999999999999999999999998765
No 5
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=316.50 Aligned_cols=133 Identities=59% Similarity=1.006 Sum_probs=131.6
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||+|+++++|+||++++++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCC
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKP 221 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~ 221 (239)
|+.+|+++|+|||..+.|||||++||.+..+|.|||||++|+|+|||.+||++
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~ 134 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999985
No 6
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.4e-48 Score=319.27 Aligned_cols=138 Identities=44% Similarity=0.707 Sum_probs=134.5
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|.|+|+
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVN 226 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~ 226 (239)
|++||++|||+||..+.|+|||++||.+.++|+|||||++++|.+|++|||+++|+.+
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~~~~~~ 138 (140)
T PRK14541 81 VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEEVVR 138 (140)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHHHHHHHHHHcCChhhhcc
Confidence 9999999999999999999999999999999999999999999999999999987643
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.8e-47 Score=313.21 Aligned_cols=137 Identities=39% Similarity=0.623 Sum_probs=133.5
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|.|+|
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~n 81 (139)
T PRK14545 2 AGNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKEN 81 (139)
T ss_pred CcceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCc
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 224 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el 224 (239)
+|++||++|||+||..+.|+|||++||.+.++|+|||||++++|.+|++|||++.|.
T Consensus 82 av~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~~ 138 (139)
T PRK14545 82 AVEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAGREM 138 (139)
T ss_pred HHHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHHHHHHHHHHhCCcccc
Confidence 999999999999999999999999999999999999999999999999999998764
No 8
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.4e-46 Score=306.55 Aligned_cols=133 Identities=49% Similarity=0.844 Sum_probs=130.7
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
.|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|++++||+.|++||+|||+++|+|.|+|+
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCC
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKP 221 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~ 221 (239)
|++||++|||+||+.+.|+|||++||.+.++|+|||||++++|.+|+++||++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134 (134)
T ss_pred HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999984
No 9
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=4.5e-46 Score=304.31 Aligned_cols=134 Identities=59% Similarity=1.005 Sum_probs=131.1
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|++||+++|+|.|+|+
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCC
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPE 222 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~ 222 (239)
|++||++|||+||..+.|+|||++||.+.++|+|||||++++|.+|++||||++
T Consensus 81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~~ 134 (134)
T PRK00668 81 IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREIALFFSEE 134 (134)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999863
No 10
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=8.9e-46 Score=316.22 Aligned_cols=157 Identities=32% Similarity=0.506 Sum_probs=141.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHH
Q 026399 69 AIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148 (239)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~ 148 (239)
+|.+|.+++-..-..--.+..|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~ 88 (177)
T PLN02931 9 LFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPS 88 (177)
T ss_pred HHHHHHcccccccCCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHH
Confidence 45555555433222223446799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCcEEEEEEeecCHHHHHHHHhCCCCCCCC---CCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCcc
Q 026399 149 LCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 225 (239)
Q Consensus 149 Lv~~mtSGPvvaL~L~G~nAV~~~R~LiGptdp~~a---~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~ 225 (239)
|++||+|||+++|+|.|+|||++||++|||+||..+ .|+|||++||.+.++|+|||||++++|++|+++||+.....
T Consensus 89 Lv~~mtSGP~vam~L~g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~~~~~ 168 (177)
T PLN02931 89 LVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDVSSG 168 (177)
T ss_pred HHHHHHhCCeEEEEEecCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCccccc
Confidence 999999999999999999999999999999999886 69999999999999999999999999999999999975543
No 11
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.3e-45 Score=301.28 Aligned_cols=128 Identities=36% Similarity=0.626 Sum_probs=125.5
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCHH
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVI 169 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV 169 (239)
|+||+|||||++++ +|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+|+|
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 68999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCCcccccccccCccEEEcCCChhhHHHHHhhcC
Q 026399 170 TYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 219 (239)
Q Consensus 170 ~~~R~LiGptdp~~a---~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF 219 (239)
++||++|||+||..+ .|+|||++||.+.++|+|||||++++|++|+++||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence 999999999999886 79999999999999999999999999999999998
No 12
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=4.8e-45 Score=298.03 Aligned_cols=129 Identities=34% Similarity=0.545 Sum_probs=126.4
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCHH
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVI 169 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV 169 (239)
|+||+|||||++++ +|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCCcccccccccCccEEEcCCChhhHHHHHhhcCC
Q 026399 170 TYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFK 220 (239)
Q Consensus 170 ~~~R~LiGptdp~~a---~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~ 220 (239)
++||++|||+||..+ .|+|||++||.+.++|+|||||++++|++|+++|||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 999999999999887 799999999999999999999999999999999997
No 13
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=6.4e-45 Score=296.16 Aligned_cols=130 Identities=61% Similarity=1.050 Sum_probs=128.3
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCHH
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVI 169 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV 169 (239)
|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|+|+|
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 68999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcC
Q 026399 170 TYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 219 (239)
Q Consensus 170 ~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF 219 (239)
++||++|||+||+.+.|+|||++||.+.++|+|||||++++|.+|+++||
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999998
No 14
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=2.6e-45 Score=298.56 Aligned_cols=135 Identities=44% Similarity=0.790 Sum_probs=124.5
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCHH
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVI 169 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV 169 (239)
|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+++++++|+.|+++|++||+++|+|+|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCc
Q 026399 170 TYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 224 (239)
Q Consensus 170 ~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el 224 (239)
++||+++||+||+++.|+|||++||.+..+|+|||||++++|.||+++|||..|+
T Consensus 81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~~~~ 135 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPEFEI 135 (135)
T ss_dssp HHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTGGGS
T ss_pred HHHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHHHHHHHHHcCCcccC
Confidence 9999999999999999999999999999999999999999999999999998764
No 15
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=1.1e-44 Score=297.06 Aligned_cols=131 Identities=34% Similarity=0.522 Sum_probs=125.4
Q ss_pred ceeEEEEcCcccccCcH-HHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 90 ERTFIAIKPDGVQRGLI-SEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~i-G~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
|+||+|||||++++++. |.|++.|+++||.|+++||++||+++|++||.+|++++||++|++||++||+++|+|.|+|+
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 68999999999999877 55667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC---CCCCcccccccccCccEEEcCCChhhHHHHHhhcCC
Q 026399 169 ITYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFK 220 (239)
Q Consensus 169 V~~~R~LiGptdp~~a---~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~ 220 (239)
|++||++|||+||..+ .|+|||++||.+.++|+|||||++++|++||++|||
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP 135 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 9999999999999764 799999999999999999999999999999999997
No 16
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.2e-44 Score=296.06 Aligned_cols=130 Identities=29% Similarity=0.485 Sum_probs=127.5
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCC-CChHHHHHHHccCcEEEEEEeecCH
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKER-PFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k-~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
++||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|+++ +||++|+++|+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC---CCCCcccccccccCccEEEcCCChhhHHHHHhhcC
Q 026399 169 ITYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 219 (239)
Q Consensus 169 V~~~R~LiGptdp~~a---~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF 219 (239)
|++||+++||+||..+ .|+|||++||.+.++|+|||||++++|++|+++||
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence 9999999999999875 79999999999999999999999999999999998
No 17
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=2.2e-44 Score=293.37 Aligned_cols=130 Identities=45% Similarity=0.758 Sum_probs=127.2
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCHH
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVI 169 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV 169 (239)
|+||+|||||++++|++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|+|
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCC---CCCCCcccccccccCccEEEcCCChhhHHHHHhhcC
Q 026399 170 TYGRKLIGATDPQK---SEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 219 (239)
Q Consensus 170 ~~~R~LiGptdp~~---a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF 219 (239)
++||+++||+||+. ..|+|||++||.+.++|+|||||++++|.+|+++||
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence 99999999999985 479999999999999999999999999999999998
No 18
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.2e-45 Score=305.27 Aligned_cols=149 Identities=62% Similarity=1.061 Sum_probs=146.1
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||++||||+|++|++++||.+++++||+|++.|+++++++++++||.+|+++|||+.||.||+|||+++|+|+|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC---CCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 169 ITYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 169 V~~~R~LiGptdp~~a---~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
|+.||+++|||+|..+ .|+|||++||.+.++|++||||+.++|+|||.+||+..++..|..+.+.|+|.
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~~~~~~~~~~~~~e 156 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFELVVYESQPERWLYE 156 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhheecccchhhhhcC
Confidence 9999999999999887 89999999999999999999999999999999999999999999999999984
No 19
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=2.7e-44 Score=292.97 Aligned_cols=129 Identities=35% Similarity=0.621 Sum_probs=126.3
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCHH
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVI 169 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV 169 (239)
|+||+|||||++.+ ++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 68999999999987 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCCcccccccccCccEEEcCCChhhHHHHHhhcC
Q 026399 170 TYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 219 (239)
Q Consensus 170 ~~~R~LiGptdp~~a---~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF 219 (239)
++||+++||+||..+ .|+|||++||.+.++|+|||||++++|++||++||
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence 999999999999876 79999999999999999999999999999999998
No 20
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=6.3e-44 Score=290.68 Aligned_cols=134 Identities=57% Similarity=0.982 Sum_probs=131.1
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCHH
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVI 169 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV 169 (239)
|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|.++++|++|+++|++||+++|+|.|+|+|
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 68999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCC
Q 026399 170 TYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPED 223 (239)
Q Consensus 170 ~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~e 223 (239)
++||++|||+||..+.|+|||++||.+.++|+|||||++++|.+|+++|||..+
T Consensus 81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~~~ 134 (135)
T smart00562 81 KTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPESE 134 (135)
T ss_pred HHHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHHHHHHHHHHcCCccc
Confidence 999999999999888999999999999999999999999999999999999865
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.5e-43 Score=300.29 Aligned_cols=138 Identities=44% Similarity=0.825 Sum_probs=131.6
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhh---------------------------
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDL--------------------------- 140 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~--------------------------- 140 (239)
..|+||+|||||+++++++|+||++|++.||+|+++||++||+++|++||.+|
T Consensus 2 ~~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (183)
T PRK14544 2 PIERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLG 81 (183)
T ss_pred CcceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccc
Confidence 46899999999999999999999999999999999999999999999999954
Q ss_pred ------cCCCChHHHHHHHccCcEEEEEEeecCHHHHHHHHhCCCCCCCCCCCCcccccccc----------cCccEEEc
Q 026399 141 ------KERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVV----------VGRNIIHG 204 (239)
Q Consensus 141 ------~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~----------~~~NaVHg 204 (239)
.+++||++|++||+||||++|+|.|+|||++||++|||+||..+.|+|||++||.+ .++|+|||
T Consensus 82 ~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~ 161 (183)
T PRK14544 82 TDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHA 161 (183)
T ss_pred cccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccceeeEEEC
Confidence 67899999999999999999999999999999999999999999999999999987 37999999
Q ss_pred CCChhhHHHHHhhcCCCCCcc
Q 026399 205 SDGPETAKDEIKLWFKPEDLV 225 (239)
Q Consensus 205 SDs~e~A~rEi~~FF~~~el~ 225 (239)
||++++|++||++||+++|+.
T Consensus 162 Sds~e~A~rEi~~fF~~~~~~ 182 (183)
T PRK14544 162 SDSPEEAEREIKFWFREEEIL 182 (183)
T ss_pred CCCHHHHHHHHHHhCChhhcc
Confidence 999999999999999988774
No 22
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.35 E-value=42 Score=28.98 Aligned_cols=46 Identities=9% Similarity=0.171 Sum_probs=37.2
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHh
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHY 137 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY 137 (239)
....++++++|..+.. ..+|.+.|......++++. .|++++|++.-
T Consensus 71 ~~~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~--~m~~~qArRiv 116 (167)
T COG1799 71 QDSSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQ--RMDPAQARRIV 116 (167)
T ss_pred CCceEEEEecCccHHH--HHHHHHHHhcCceEEEEee--eCCHHHHHHHH
Confidence 4568999999999987 7899999988777777655 46889888764
No 23
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=41.82 E-value=52 Score=23.82 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=28.5
Q ss_pred EEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhh
Q 026399 93 FIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDL 140 (239)
Q Consensus 93 l~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~ 140 (239)
+++++|.-+.. +.+|.+.|.+....|++ +-.|+.++++++....
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivn--l~~l~~~~~~Ri~Dfl 44 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVN--LENLDDEEAQRILDFL 44 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE---TTS-HHHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEE--CCCCCHHHHHHHHHHH
Confidence 36889999876 78899999877555554 5667888877775443
No 24
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.84 E-value=1.1e+02 Score=24.89 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=29.2
Q ss_pred eEEEEcCcccccCcHHHHH-HHHHHcCceEEeEEEeccCHHHHHHH
Q 026399 92 TFIAIKPDGVQRGLISEII-SRFERKGFKLVAIKIVVPSKEFAQKH 136 (239)
Q Consensus 92 Tl~LIKPDav~~g~iG~II-~~I~~~Gf~Iv~~Kmv~Ls~e~A~ef 136 (239)
-+.-+++|....| -+|+ ..|+..||+++.....+-.++.++..
T Consensus 6 ~~a~~g~D~Hd~g--~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa 49 (132)
T TIGR00640 6 LVAKMGQDGHDRG--AKVIATAYADLGFDVDVGPLFQTPEEIARQA 49 (132)
T ss_pred EEEeeCCCccHHH--HHHHHHHHHhCCcEEEECCCCCCHHHHHHHH
Confidence 3556677777654 2555 44689999999998876555555544
No 25
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=34.17 E-value=93 Score=29.69 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=54.8
Q ss_pred cCcHHHHHHHHHHcCceEEeEEEeccCHHHH-------HHHhhhhcCCC----------Ch----HHHHHHHccCcEEEE
Q 026399 103 RGLISEIISRFERKGFKLVAIKIVVPSKEFA-------QKHYHDLKERP----------FF----NGLCEFLSSGPVIAM 161 (239)
Q Consensus 103 ~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A-------~efY~~~~~k~----------~f----~~Lv~~mtSGPvvaL 161 (239)
.|-.|.|++.|++..+.-.++||+.|++.+- ++.|..++--| -+ -++.+.+...|+-.+
T Consensus 150 sGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvril 229 (400)
T KOG0328|consen 150 SGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRIL 229 (400)
T ss_pred eCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEE
Confidence 3556999999999999999999999987653 34455444322 12 234555556788777
Q ss_pred EEeecCHHHHHHHHhCCCCCCCCCCCCcccccc
Q 026399 162 VWEGEGVITYGRKLIGATDPQKSEPGTIRGDLA 194 (239)
Q Consensus 162 ~L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG 194 (239)
+=+.+-..+-++++.=..+.+...-++|-..|.
T Consensus 230 vkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd 262 (400)
T KOG0328|consen 230 VKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYD 262 (400)
T ss_pred EecCCCchhhhhhheeeechhhhhHhHHHHHhh
Confidence 766554444333333333333333333434443
No 26
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=32.06 E-value=1.8e+02 Score=21.21 Aligned_cols=46 Identities=20% Similarity=0.439 Sum_probs=31.0
Q ss_pred eeEEEEcCcccccCcHHHHHHHHHHc---CceEEeEEEeccCHHHHHHHhhhh
Q 026399 91 RTFIAIKPDGVQRGLISEIISRFERK---GFKLVAIKIVVPSKEFAQKHYHDL 140 (239)
Q Consensus 91 ~Tl~LIKPDav~~g~iG~II~~I~~~---Gf~Iv~~Kmv~Ls~e~A~efY~~~ 140 (239)
-..+.|.|+.-.+|.-..+++.+++. |+....+. +...+..||..+
T Consensus 67 i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~~ 115 (117)
T PF13673_consen 67 ISHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRKL 115 (117)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHHT
T ss_pred EEEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHhC
Confidence 66688999988877544555555332 88877777 778888888753
No 27
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.07 E-value=2.4e+02 Score=25.37 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=46.6
Q ss_pred ceeEEEEcCcc-cccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHH-HHHHHccCc-EEEEEEeec
Q 026399 90 ERTFIAIKPDG-VQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG-LCEFLSSGP-VIAMVWEGE 166 (239)
Q Consensus 90 E~Tl~LIKPDa-v~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~-Lv~~mtSGP-vvaL~L~G~ 166 (239)
-+.+++|-+|. .-+.....+.+.+++.|.+|+....+.++. ..|.. +.+...+|| +|.+...+.
T Consensus 138 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~-------------~d~s~~i~~i~~~~~d~v~~~~~~~ 204 (347)
T cd06335 138 FKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGD-------------KDMTAQLLRAKAAGADAIIIVGNGP 204 (347)
T ss_pred CCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCC-------------ccHHHHHHHHHhCCCCEEEEEecCh
Confidence 46788887764 444456778888999999999877665442 22333 233345677 455555666
Q ss_pred CHHHHHHHHh
Q 026399 167 GVITYGRKLI 176 (239)
Q Consensus 167 nAV~~~R~Li 176 (239)
+++.-++++-
T Consensus 205 ~~~~~~~~~~ 214 (347)
T cd06335 205 EGAQIANGMA 214 (347)
T ss_pred HHHHHHHHHH
Confidence 7776665443
No 28
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=27.84 E-value=46 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=22.9
Q ss_pred ccCHHHHHHHhhhhcCCCChHHHHHHHccCcEE
Q 026399 127 VPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVI 159 (239)
Q Consensus 127 ~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvv 159 (239)
.|+.+++++||... |++|...--.||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 57899999999776 89988777778864
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=26.19 E-value=3.6e+02 Score=22.58 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=38.4
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEec-------cCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEE
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVV-------PSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAM 161 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~-------Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL 161 (239)
.=+|++-+.|+... ++..+.++++|.++..+++-. +++++..+...... + =...|+++.
T Consensus 32 ~LKTII~L~~e~~~----~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~il---------d-~~n~PvLiH 97 (164)
T PF03162_consen 32 GLKTIINLRPEPPS----QDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIIL---------D-PRNYPVLIH 97 (164)
T ss_dssp T-SEEEE--SS-------HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-----------GGG-SEEEE
T ss_pred CCceEEEecCCCCC----HHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHh---------C-CCCCCEEEE
Confidence 35899999998654 466667799999999988753 33333333322111 1 135799999
Q ss_pred EEeecC----HHHHHHHHhC
Q 026399 162 VWEGEG----VITYGRKLIG 177 (239)
Q Consensus 162 ~L~G~n----AV~~~R~LiG 177 (239)
+..|.+ +|.-+|++-|
T Consensus 98 C~~G~~rTG~vvg~lRk~Q~ 117 (164)
T PF03162_consen 98 CNHGKDRTGLVVGCLRKLQG 117 (164)
T ss_dssp -SSSSSHHHHHHHHHHHHTT
T ss_pred eCCCCcchhhHHHHHHHHcC
Confidence 999987 4556675543
No 30
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=25.77 E-value=2.9e+02 Score=21.75 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=42.3
Q ss_pred ceeEEEEcCcccccCc--HHHHHHHHHHcCceEEeEEEe--ccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEee
Q 026399 90 ERTFIAIKPDGVQRGL--ISEIISRFERKGFKLVAIKIV--VPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEG 165 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~--iG~II~~I~~~Gf~Iv~~Kmv--~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G 165 (239)
=+|++=+.||.-..+. ..++-...++.|+..+.+-+. .+++++++.|.. +++.+ .||+++.+-.|
T Consensus 28 fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~----------~l~~~-~~Pvl~hC~sG 96 (110)
T PF04273_consen 28 FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFAD----------ALESL-PKPVLAHCRSG 96 (110)
T ss_dssp --EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHH----------HHHTT-TTSEEEE-SCS
T ss_pred CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHH----------HHHhC-CCCEEEECCCC
Confidence 4899999999754332 233445668999998887554 677777777743 33333 58999999999
Q ss_pred cCHHHHHH
Q 026399 166 EGVITYGR 173 (239)
Q Consensus 166 ~nAV~~~R 173 (239)
..+..-|.
T Consensus 97 ~Ra~~l~~ 104 (110)
T PF04273_consen 97 TRASALWA 104 (110)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 88877663
No 31
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.99 E-value=1.4e+02 Score=24.45 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=46.1
Q ss_pred eeEEEEcCcccccCcHHHHHHHHHH-cCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeec--C
Q 026399 91 RTFIAIKPDGVQRGLISEIISRFER-KGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGE--G 167 (239)
Q Consensus 91 ~Tl~LIKPDav~~g~iG~II~~I~~-~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~--n 167 (239)
.||+||.-|-..+ +-.-|..|++ .|++|.+. --.+.++.|.+.+...-|.. -+...-..+.++.++ .
T Consensus 1 ~t~vliR~Ds~~K--il~ALaDleRyagiki~gk-Prii~p~~aD~~~~~ilGe~-------R~k~~~aa~a~v~~~a~~ 70 (125)
T COG1844 1 MTIVLIRADSYDK--ILTALADLERYAGIKIRGK-PRIIPPELADEILSSILGEV-------RKKCKVAAVAEVEEPASK 70 (125)
T ss_pred CeEEEEecCcHHH--HHHHHHHHHHhcCceeecC-CcccChhhHHHHHHHHHHHH-------hcccchhheeeecCccHH
Confidence 3899999998874 5566667765 56777765 33356666666655443321 011111233444443 4
Q ss_pred HHHHHHHHhCCC
Q 026399 168 VITYGRKLIGAT 179 (239)
Q Consensus 168 AV~~~R~LiGpt 179 (239)
+|.++|++=-|.
T Consensus 71 aI~rIr~IHPPA 82 (125)
T COG1844 71 AIGRIRKIHPPA 82 (125)
T ss_pred HHHHHHhcCCCc
Confidence 788888875443
No 32
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.65 E-value=2e+02 Score=21.53 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=39.3
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhh
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDL 140 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~ 140 (239)
.-..++|.-|+..+ .+++..+.+.|..|.--|-+.++.++++++....
T Consensus 62 ~~D~V~I~tp~~~h----~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 62 DVDAVIIATPPSSH----AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp TESEEEEESSGGGH----HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred cCCEEEEecCCcch----HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 34667777777554 5888888899999999999999999999997644
No 33
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=24.23 E-value=3.7e+02 Score=24.31 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=28.7
Q ss_pred ceeEEEEcCcc-cccCcHHHHHHHHHHcCceEEeEEEeccCH
Q 026399 90 ERTFIAIKPDG-VQRGLISEIISRFERKGFKLVAIKIVVPSK 130 (239)
Q Consensus 90 E~Tl~LIKPDa-v~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~ 130 (239)
-+++++|-+|. +-......+.+.+++.|++|+....+....
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~ 174 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGH 174 (348)
T ss_pred CCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCCh
Confidence 47899998884 333344555677899999999876665443
No 34
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=24.22 E-value=39 Score=24.92 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=22.2
Q ss_pred ccCHHHHHHHhhhhcCCCChHHHHHHHccCcEE
Q 026399 127 VPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVI 159 (239)
Q Consensus 127 ~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvv 159 (239)
.|+.++.++||... |++|...--+||++
T Consensus 22 ~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 22 AMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 67899999999764 88887666677764
No 35
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.82 E-value=1.5e+02 Score=26.92 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=41.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHH
Q 026399 70 IAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKE 131 (239)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e 131 (239)
-..|..+-+..--+.|..-.-+.+.++.|....- -...++.|+.+||+|+..+-+-++.+
T Consensus 98 ~~v~vvTts~Avv~aL~al~a~ri~vlTPY~~ev--n~~e~ef~~~~Gfeiv~~~~Lgi~dn 157 (238)
T COG3473 98 KGVPVVTTSTAVVEALNALGAQRISVLTPYIDEV--NQREIEFLEANGFEIVDFKGLGITDN 157 (238)
T ss_pred cCCceeechHHHHHHHHhhCcceEEEeccchhhh--hhHHHHHHHhCCeEEEEeeccCCccc
Confidence 3445444444444444444557899999987653 35788999999999999988766554
No 36
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=22.63 E-value=2.4e+02 Score=25.22 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=47.7
Q ss_pred hhhhhhhhhhhhhhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEE---------EeccCHHHHHHHhhh
Q 026399 71 AIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIK---------IVVPSKEFAQKHYHD 139 (239)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~K---------mv~Ls~e~A~efY~~ 139 (239)
..|+.+-+..-.+.|..---+-+.|+.|..-. .-..+.+.|++.||+|+..+ +-+++++...++-.+
T Consensus 101 g~p~tt~~~A~~~AL~alg~~RIalvTPY~~~--v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~ 176 (239)
T TIGR02990 101 GTPVVTPSSAAVDGLAALGVRRISLLTPYTPE--TSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALA 176 (239)
T ss_pred CCCeeCHHHHHHHHHHHcCCCEEEEECCCcHH--HHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHH
Confidence 46776666666677776677899999997543 24678888999999999984 444556655555443
No 37
>COG4996 Predicted phosphatase [General function prediction only]
Probab=21.33 E-value=1e+02 Score=26.22 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=49.5
Q ss_pred cccCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhceeEEEEcCcccccCcHHHHHHHH-HHcCceEEeEEEeccCHH
Q 026399 54 GRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRF-ERKGFKLVAIKIVVPSKE 131 (239)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I-~~~Gf~Iv~~Kmv~Ls~e 131 (239)
-++|.--+..+|+. ..- .++.-+++.-..=--+.+|+|+-.+...+.++|.+| .+.|.+|.-.+.+-++..
T Consensus 54 rnsG~i~~~~sWN~---~~k----A~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR 125 (164)
T COG4996 54 RNSGYILGLASWNF---EDK----AIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDR 125 (164)
T ss_pred HhCCcEEEEeecCc---hHH----HHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecc
Confidence 34566666778862 222 122334555555567899999999887788999999 578999988888876654
No 38
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=20.00 E-value=1.1e+02 Score=29.44 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=39.5
Q ss_pred hhhhhhhhhhhhh-hhhhhhhceeEEEEcCccccc-CcHHHHHHHHHHcCceEEe
Q 026399 70 IAIPAAAYTLQEQ-EVHAAEMERTFIAIKPDGVQR-GLISEIISRFERKGFKLVA 122 (239)
Q Consensus 70 ~~~~~~~~~~~~~-~~l~~~~E~Tl~LIKPDav~~-g~iG~II~~I~~~Gf~Iv~ 122 (239)
-+||.=-|..-+| +-++-..|.+++.|+|.-=.. =++++|++.|+++|=+|.-
T Consensus 163 kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~ 217 (465)
T KOG3846|consen 163 KAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIAL 217 (465)
T ss_pred CCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEE
Confidence 3678777888777 556667899999999963221 1378999999999966543
Done!