Query 026399
Match_columns 239
No_of_seqs 163 out of 1138
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8u_A Nucleoside diphosphate 100.0 1E-53 3.4E-58 357.9 14.7 149 89-237 1-149 (157)
2 4fkx_A NDK B, nucleoside dipho 100.0 1.1E-53 3.7E-58 358.9 13.9 154 85-238 7-160 (161)
3 3l7u_A Nucleoside diphosphate 100.0 1.6E-53 5.3E-58 361.2 14.7 156 82-237 17-172 (172)
4 3mpd_A Nucleoside diphosphate 100.0 2.5E-53 8.6E-58 353.4 14.8 147 88-236 4-151 (151)
5 1w7w_A Nucleoside diphosphate 100.0 1.9E-53 6.4E-58 363.7 13.5 157 83-239 26-182 (182)
6 2vu5_A Nucleoside diphosphate 100.0 4E-53 1.4E-57 351.0 14.5 148 89-236 1-148 (148)
7 3r9l_A Nucleoside diphosphate 100.0 1.4E-53 4.9E-58 356.3 10.6 150 88-237 6-155 (155)
8 1xiq_A Nucleoside diphosphate 100.0 7.3E-53 2.5E-57 352.6 14.6 152 86-237 6-157 (157)
9 1nb2_A Nucleoside diphosphate 100.0 4.9E-53 1.7E-57 351.3 13.4 149 89-237 2-150 (150)
10 1s57_A Nucleoside diphosphate 100.0 1.4E-52 4.6E-57 349.6 15.2 150 88-237 4-153 (153)
11 3bbb_A Nucleoside diphosphate 100.0 9E-53 3.1E-57 350.0 13.8 150 88-237 2-151 (151)
12 1u8w_A Nucleoside diphosphate 100.0 1.9E-52 6.4E-57 347.4 15.4 148 89-237 1-148 (149)
13 3fkb_A NDP kinase, NDK, nucleo 100.0 1.3E-52 4.6E-57 350.4 14.5 149 88-237 7-155 (155)
14 3js9_A Nucleoside diphosphate 100.0 1.6E-52 5.3E-57 350.3 14.2 151 86-236 6-156 (156)
15 1pku_A Nucleoside diphosphate 100.0 1.3E-52 4.5E-57 348.7 13.6 148 89-237 2-149 (150)
16 3b54_A NDK, NDP kinase, nucleo 100.0 7.5E-53 2.6E-57 353.8 11.9 155 83-237 7-161 (161)
17 1zs6_A Nucleoside diphosphate 100.0 3.1E-52 1.1E-56 352.5 13.7 153 85-237 17-169 (169)
18 2az3_A Nucleoside diphosphate 100.0 4.4E-52 1.5E-56 350.1 14.1 153 85-237 4-158 (164)
19 4hr2_A Nucleoside diphosphate 100.0 7.3E-52 2.5E-56 342.6 14.5 139 88-226 6-144 (145)
20 2dxe_A Nucleoside diphosphate 100.0 5.6E-52 1.9E-56 348.2 13.3 150 88-238 6-158 (160)
21 4dz6_A Nucleoside diphosphate 100.0 3.3E-52 1.1E-56 358.0 10.8 156 82-237 19-189 (190)
22 2hur_A NDK, nucleoside diphosp 100.0 8.3E-51 2.9E-55 335.1 15.5 141 89-229 2-142 (142)
23 1nhk_R Nucleoside diphosphate 100.0 1E-50 3.5E-55 335.3 14.0 141 89-229 2-142 (144)
24 3evo_A NDP kinase, NDK, nucleo 100.0 2.1E-50 7.2E-55 334.2 15.1 139 87-225 4-143 (146)
25 1wkj_A Nucleoside diphosphate 100.0 2.8E-50 9.5E-55 330.1 14.6 136 89-224 1-136 (137)
26 3ztp_A Nucleoside diphosphate 100.0 1.9E-50 6.4E-55 333.0 11.5 136 89-224 3-141 (142)
27 1ehw_A NDPK H4, nucleoside dip 100.0 6.3E-50 2.1E-54 336.4 14.5 140 88-227 23-162 (162)
28 1k44_A Nucleoside diphosphate 100.0 2.8E-49 9.6E-54 323.8 15.0 133 89-221 2-135 (136)
29 1xqi_A Nucleoside diphosphate 100.0 8.6E-46 2.9E-50 319.4 10.3 138 88-225 14-194 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 5.3E-33 1.8E-37 258.0 7.2 116 87-224 233-348 (352)
31 3p04_A Uncharacterized BCR; SE 60.2 8.8 0.0003 28.4 3.8 45 90-138 4-48 (87)
32 3bkw_A MLL3908 protein, S-aden 24.8 1.1E+02 0.0038 24.1 5.3 30 106-135 194-223 (243)
No 1
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=1e-53 Score=357.86 Aligned_cols=149 Identities=52% Similarity=0.951 Sum_probs=147.3
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
|+.||+++|||||.++.|+|||++||.+..+|+|||||++++|++||++||++.|+.+|.+..+.|+|.
T Consensus 81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 149 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCCTTHHHHCC
T ss_pred HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 2
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=1.1e-53 Score=358.88 Aligned_cols=154 Identities=58% Similarity=1.028 Sum_probs=149.2
Q ss_pred hhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEe
Q 026399 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWE 164 (239)
Q Consensus 85 l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~ 164 (239)
+-...|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+
T Consensus 7 ~~~~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 86 (161)
T 4fkx_A 7 HHMPSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWE 86 (161)
T ss_dssp --CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred cCCCcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEe
Confidence 34466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCccccccC
Q 026399 165 GEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 238 (239)
Q Consensus 165 G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~~ 238 (239)
|+|||+.||+++|||||..+.|+|||++||.+..+|+|||||++++|+|||++||+++|+.+|....++|+|..
T Consensus 87 g~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye~ 160 (161)
T 4fkx_A 87 GLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWTSHSVKQIYER 160 (161)
T ss_dssp STTHHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCSC
T ss_pred ccChHHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccchhheecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-53 Score=361.22 Aligned_cols=156 Identities=60% Similarity=1.109 Sum_probs=149.5
Q ss_pred hhhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEE
Q 026399 82 QEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAM 161 (239)
Q Consensus 82 ~~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL 161 (239)
+..+...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|
T Consensus 17 ~~~~~~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvam 96 (172)
T 3l7u_A 17 RGSHMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAM 96 (172)
T ss_dssp ----CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEE
T ss_pred chhhcchhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 162 VWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 162 ~L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
+|+|+|||+.||++||||||..+.|+|||++||.+..+|+|||||++|+|++||++||+++|+.+|.+..++|+|.
T Consensus 97 vleg~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 172 (172)
T 3l7u_A 97 VWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172 (172)
T ss_dssp EEESTTHHHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred EEeCCCHHHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhccccccchhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=2.5e-53 Score=353.43 Aligned_cols=147 Identities=52% Similarity=0.891 Sum_probs=144.2
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
.+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+|
T Consensus 4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n 83 (151)
T 3mpd_A 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKD 83 (151)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCC-CCCccccccCCccccc
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFK-PEDLVNYTSNAEKWVY 236 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~-~~el~~~~~~~~~~~~ 236 (239)
||+.||+++|||||..+.|+|||++||.+..+|+|||||++++|++||++||+ ++|+.+| ..++|+|
T Consensus 84 aV~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~e~~~~--~~~~~~~ 151 (151)
T 3mpd_A 84 AVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSF--FDKEWIY 151 (151)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCCCCCCC--TTHHHHC
T ss_pred HHHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcchheee--ccccccC
Confidence 99999999999999999999999999999999999999999999999999999 9999999 8899998
No 5
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=1.9e-53 Score=363.70 Aligned_cols=157 Identities=87% Similarity=1.414 Sum_probs=149.6
Q ss_pred hhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEE
Q 026399 83 EVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMV 162 (239)
Q Consensus 83 ~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~ 162 (239)
..+...+|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|+++|||++|++||+||||++|+
T Consensus 26 ~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamv 105 (182)
T 1w7w_A 26 MDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMV 105 (182)
T ss_dssp ----CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred ccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEE
Confidence 56777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCccccccCC
Q 026399 163 WEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESN 239 (239)
Q Consensus 163 L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~~~ 239 (239)
|+|+|||+.||+++|||||..+.|+|||++||.+..+|+|||||++|+|++||++||++.|+.+|.+..+.|+|.+|
T Consensus 106 leG~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~~~ 182 (182)
T 1w7w_A 106 WEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNSEKWIYGDN 182 (182)
T ss_dssp EESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCCCCCTTHHHHTC--
T ss_pred EecccHHHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCchhccccccccccceecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988
No 6
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=4e-53 Score=351.03 Aligned_cols=148 Identities=52% Similarity=1.015 Sum_probs=146.3
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCccccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 236 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~ 236 (239)
|+.||+++|||||..+.|+|||++||.+..+|+|||||++|+|++||++||++.|+.+|.+..+.|+|
T Consensus 81 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~ 148 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148 (148)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTC
T ss_pred HHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCchhccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 7
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=1.4e-53 Score=356.26 Aligned_cols=150 Identities=59% Similarity=1.083 Sum_probs=109.4
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
.+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+|
T Consensus 6 ~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n 85 (155)
T 3r9l_A 6 ARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGAN 85 (155)
T ss_dssp CSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTT
T ss_pred chheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
||+.||+++|||||..+.|+|||++||.+..+|+|||||++++|++||++||+++|+.+|.+..++|+|.
T Consensus 86 aV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 155 (155)
T 3r9l_A 86 VVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE 155 (155)
T ss_dssp HHHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTCC------------
T ss_pred HHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhccccccchhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994
No 8
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=7.3e-53 Score=352.64 Aligned_cols=152 Identities=50% Similarity=1.000 Sum_probs=147.4
Q ss_pred hhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEee
Q 026399 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEG 165 (239)
Q Consensus 86 ~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G 165 (239)
-..+|+||+|||||+|++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|
T Consensus 6 ~~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 85 (157)
T 1xiq_A 6 HHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEG 85 (157)
T ss_dssp ---CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEES
T ss_pred cchhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 166 EGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 166 ~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
+|||+.||+++|||||..+.|+|||++||.+..+|+|||||++|+|++||++||++.|+.+|.+..+.|+|.
T Consensus 86 ~naV~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 157 (157)
T 1xiq_A 86 VDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELTQWKHHMKEWICS 157 (157)
T ss_dssp TTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTCC
T ss_pred ccchHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994
No 9
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=4.9e-53 Score=351.27 Aligned_cols=149 Identities=48% Similarity=0.790 Sum_probs=147.1
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
|+.||+++|||||..+.|+|||++||.+..+|+|||||++++|++||++||++.|+.+|.+..+.|+|.
T Consensus 82 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 150 (150)
T 1nb2_A 82 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAASGTPAAAADIYG 150 (150)
T ss_dssp HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSSCCCCCTTGGGTCC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999994
No 10
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=1.4e-52 Score=349.63 Aligned_cols=150 Identities=57% Similarity=1.049 Sum_probs=147.5
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
.+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+|
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 83 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVG 83 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETT
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
||+.||+++|||||..+.|+|||++||.+..+|+|||||++++|.+||++||++.|+.+|.+..+.|+|.
T Consensus 84 aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 153 (153)
T 1s57_A 84 VVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 153 (153)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCCCCCCCTTHHHHCC
T ss_pred HHHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhcccccccchhhhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994
No 11
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=9e-53 Score=350.01 Aligned_cols=150 Identities=63% Similarity=1.142 Sum_probs=147.5
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
.+|+||+|||||++++|++|+||++|+++||+|+++||+++++++|++||.+|+++|||++|++||+||||++|+|+|+|
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 81 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN 81 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
||+.||+++|||||..+.|+|||++||.+..+|+|||||++++|++||++||+++|+.+|.+..+.|+|.
T Consensus 82 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 151 (151)
T 3bbb_A 82 VVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151 (151)
T ss_dssp HHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred HHHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChhhcccccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994
No 12
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=1.9e-52 Score=347.43 Aligned_cols=148 Identities=59% Similarity=1.124 Sum_probs=145.4
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
|+.||+++|||||..+.|+|||++||.+..+|+|||||++++|.+||++|| ++|+.+|.+..+.|+|.
T Consensus 81 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~~~~~~~~~~~ 148 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWF-PDGPVNWQSSVHPWVYE 148 (149)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHC-TTCCCCCCCTTGGGTSC
T ss_pred hHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhC-chhhccccccchhhhhc
Confidence 999999999999999999999999999999999999999999999999999 67899999999999996
No 13
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=1.3e-52 Score=350.42 Aligned_cols=149 Identities=57% Similarity=1.017 Sum_probs=145.4
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
.+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+|
T Consensus 7 ~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n 86 (155)
T 3fkb_A 7 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKG 86 (155)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred ccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
||+.||+++|||||..+.|+|||++||.+..+|+|||||++++|+|||++||+++|+.+|.+.. .|+|.
T Consensus 87 aV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~-~~~~~ 155 (155)
T 3fkb_A 87 VVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPN-PNLYE 155 (155)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCSCCCCC-TTSCC
T ss_pred HHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccc-hhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999887 49984
No 14
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1.6e-52 Score=350.33 Aligned_cols=151 Identities=50% Similarity=0.956 Sum_probs=146.9
Q ss_pred hhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEee
Q 026399 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEG 165 (239)
Q Consensus 86 ~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G 165 (239)
-..+|+|++|||||+|++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|
T Consensus 6 ~~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg 85 (156)
T 3js9_A 6 HHHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEG 85 (156)
T ss_dssp ---CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEE
T ss_pred ccchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCccccc
Q 026399 166 EGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 236 (239)
Q Consensus 166 ~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~ 236 (239)
+|||+.||+++|||||.++.|+|||++||.+..+|+||||||+++|.+||++||++.|+.+|.+..++|+|
T Consensus 86 ~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~~ 156 (156)
T 3js9_A 86 PEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLVTWERSVGGWIY 156 (156)
T ss_dssp TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGGCCCCCCTTGGGTC
T ss_pred cchHHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhhcccccccchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 15
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=1.3e-52 Score=348.68 Aligned_cols=148 Identities=59% Similarity=1.091 Sum_probs=145.6
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
|+.||+++|||||..+.|+|||++||.+..+|+|||||++++|++||++|| ++++.+|.+..+.|+|.
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~~~~~~~~~~~ 149 (150)
T 1pku_A 82 VATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWF-PEGLAEWRSNLHPWIYE 149 (150)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHC-TTCCCCCCCTTHHHHCC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhC-cHHhccccccchhhhhc
Confidence 999999999999999999999999999999999999999999999999999 67999999999999996
No 16
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-53 Score=353.84 Aligned_cols=155 Identities=53% Similarity=1.012 Sum_probs=142.7
Q ss_pred hhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEE
Q 026399 83 EVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMV 162 (239)
Q Consensus 83 ~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~ 162 (239)
.++.+..|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+
T Consensus 7 ~~~~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamv 86 (161)
T 3b54_A 7 HHMSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATV 86 (161)
T ss_dssp ---CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEE
T ss_pred cccccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEE
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 163 WEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 163 L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
|+|+|||+.||+++|||||..+.|+|||++||.+..+|+|||||++++|++||++||++.|+.+|.+..+.|+|.
T Consensus 87 leg~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 161 (161)
T 3b54_A 87 WEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 161 (161)
T ss_dssp EESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTCCCCCCTTHHHHCC
T ss_pred EeccChHHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhcccccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
No 17
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=3.1e-52 Score=352.51 Aligned_cols=153 Identities=54% Similarity=1.030 Sum_probs=149.1
Q ss_pred hhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEe
Q 026399 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWE 164 (239)
Q Consensus 85 l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~ 164 (239)
....+|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|+++|||++|++||+||||++|+|+
T Consensus 17 ~~~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 96 (169)
T 1zs6_A 17 CTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQ 96 (169)
T ss_dssp -CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred hhhhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEe
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccccccCCcccccc
Q 026399 165 GEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 165 G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
|+|||+.||+++|||||..+.|+|||++||.+..+|+|||||++|+|++||++||++.|+.+|.+..+.|+|.
T Consensus 97 g~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 169 (169)
T 1zs6_A 97 GLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169 (169)
T ss_dssp STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGSCCCCCTTHHHHCC
T ss_pred cCCchHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCchhhhcccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999994
No 18
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=4.4e-52 Score=350.12 Aligned_cols=153 Identities=48% Similarity=0.906 Sum_probs=148.3
Q ss_pred hhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEe
Q 026399 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWE 164 (239)
Q Consensus 85 l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~ 164 (239)
+...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+
T Consensus 4 l~~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 83 (164)
T 2az3_A 4 MTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWE 83 (164)
T ss_dssp ---CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred ccCccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEc
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChh--hHHHHHhhcCCCCCccccccCCcccccc
Q 026399 165 GEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE--TAKDEIKLWFKPEDLVNYTSNAEKWVYE 237 (239)
Q Consensus 165 G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e--~A~rEi~~FF~~~el~~~~~~~~~~~~~ 237 (239)
|+|||+.||+++|||||..+.|+|||++||.+..+|+|||||+++ +|.+||++||++.|+.+|.+..+.|+|.
T Consensus 84 g~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e~~~~~~~~~~~~~~ 158 (164)
T 2az3_A 84 GADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVYE 158 (164)
T ss_dssp STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSSCCCCCTTHHHHCC
T ss_pred cccHHHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchhhcccccchHHHHHh
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999997
No 19
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=7.3e-52 Score=342.59 Aligned_cols=139 Identities=47% Similarity=0.756 Sum_probs=136.1
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
.+|+||+|||||+|++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+|
T Consensus 6 ~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~ 85 (145)
T 4hr2_A 6 ALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGED 85 (145)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred hHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCccc
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVN 226 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~ 226 (239)
||+.||+++|||||.++.|+|||++||.+..+|+|||||++|+|++||++|||+.|+.+
T Consensus 86 aV~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~~ei~~ 144 (145)
T 4hr2_A 86 AILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYS 144 (145)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCGGGCCC
T ss_pred cHhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCChhhccc
Confidence 99999999999999999999999999999999999999999999999999999888754
No 20
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=5.6e-52 Score=348.19 Aligned_cols=150 Identities=50% Similarity=0.919 Sum_probs=146.9
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
..|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+|
T Consensus 6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 85 (160)
T 2dxe_A 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRY 85 (160)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCc---cEEEcCCChhhHHHHHhhcCCCCCccccccCCccccccC
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGR---NIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 238 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~---NaVHgSDs~e~A~rEi~~FF~~~el~~~~~~~~~~~~~~ 238 (239)
||+.||+++|||||..+.|+|||++||.+..+ |+|||||++|+|++||++||++.|+.+| +..+.|+|..
T Consensus 86 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~-~~~~~~~~~~ 158 (160)
T 2dxe_A 86 AVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEY-PRAADWFYKK 158 (160)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGCCCC-CCTTHHHHCC
T ss_pred HHHHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCchhhccc-cchhhhHhcc
Confidence 99999999999999999999999999999999 9999999999999999999999999999 9999999973
No 21
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=3.3e-52 Score=357.96 Aligned_cols=156 Identities=40% Similarity=0.663 Sum_probs=149.4
Q ss_pred hhhhhhhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhh-----hhcCCCChHHHHHHHccC
Q 026399 82 QEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYH-----DLKERPFFNGLCEFLSSG 156 (239)
Q Consensus 82 ~~~l~~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~-----~~~~k~~f~~Lv~~mtSG 156 (239)
+..+...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||. +|+++|||++|++||+||
T Consensus 19 ~~~~~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSG 98 (190)
T 4dz6_A 19 PGSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNS 98 (190)
T ss_dssp ----CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTS
T ss_pred cccccchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCC
Confidence 344556789999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cEEEEEEeecCHHHHHHHHhCCCCCCCCCCCCccccccccc----------CccEEEcCCChhhHHHHHhhcCCCCCccc
Q 026399 157 PVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVV----------GRNIIHGSDGPETAKDEIKLWFKPEDLVN 226 (239)
Q Consensus 157 PvvaL~L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~----------~~NaVHgSDs~e~A~rEi~~FF~~~el~~ 226 (239)
||++|+|+|+|||+.||+++|||||.++.|+|||++||.+. .+|+|||||++++|+|||++||++.|+.+
T Consensus 99 PvvamvleG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~~ 178 (190)
T 4dz6_A 99 PVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEILN 178 (190)
T ss_dssp EEEEEEEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGSCC
T ss_pred CEEEEEEecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHhcc
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cccCCcccccc
Q 026399 227 YTSNAEKWVYE 237 (239)
Q Consensus 227 ~~~~~~~~~~~ 237 (239)
|.+..+.|+|.
T Consensus 179 ~~~~~~~~~y~ 189 (190)
T 4dz6_A 179 YKRDDECEHYY 189 (190)
T ss_dssp CCCTTHHHHTC
T ss_pred ccccchhheec
Confidence 99999999996
No 22
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=8.3e-51 Score=335.06 Aligned_cols=141 Identities=40% Similarity=0.694 Sum_probs=138.2
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCcccccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTS 229 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~ 229 (239)
|+.||+++|||||..+.|+|||++||.+..+|+|||||++|+|++||++||++.|+.+|.+
T Consensus 82 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 142 (142)
T 2hur_A 82 VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR 142 (142)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCSCCCCC
T ss_pred HHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999863
No 23
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=1e-50 Score=335.32 Aligned_cols=141 Identities=45% Similarity=0.768 Sum_probs=138.5
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCcccccc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTS 229 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~~~ 229 (239)
|+.||+++|||||..+.|+|||++||.+..+|+|||||++|+|++||++||++.|+.+|.+
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 142 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIHSYPY 142 (144)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999964
No 24
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=2.1e-50 Score=334.17 Aligned_cols=139 Identities=42% Similarity=0.819 Sum_probs=131.1
Q ss_pred hhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEecc-CHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEee
Q 026399 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVP-SKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEG 165 (239)
Q Consensus 87 ~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~L-s~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G 165 (239)
..+|+||+|||||+++++++|+||++|+++||+|+++||++| |+++|++||.+|+++|||++|++||+||||++|+|+|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 357999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCcc
Q 026399 166 EGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 225 (239)
Q Consensus 166 ~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~ 225 (239)
+|||+.||+++|||||..+.|+|||++||.+..+|+|||||++++|++||++||+..++.
T Consensus 84 ~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 143 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKME 143 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcC
Confidence 999999999999999999999999999999999999999999999999999999987664
No 25
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=2.8e-50 Score=330.10 Aligned_cols=136 Identities=56% Similarity=1.023 Sum_probs=133.6
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCc
Q 026399 169 ITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 224 (239)
Q Consensus 169 V~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el 224 (239)
|+.||+++|||||..+.|+|||++||.+..+|+|||||++|+|++||++||+++|+
T Consensus 81 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 136 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEEL 136 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHHHHHHHHHHhCChhhc
Confidence 99999999999999999999999999999999999999999999999999998776
No 26
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=1.9e-50 Score=332.98 Aligned_cols=136 Identities=42% Similarity=0.725 Sum_probs=133.6
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC---CCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCc
Q 026399 169 ITYGRKLIGATDPQKS---EPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 224 (239)
Q Consensus 169 V~~~R~LiGptdp~~a---~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el 224 (239)
|+.||+++|||||..+ .|+|||++||.+..+|+|||||++++|++||++||++.|+
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 141 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGLEI 141 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCGGGC
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCcccc
Confidence 9999999999999998 9999999999999999999999999999999999998775
No 27
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=6.3e-50 Score=336.40 Aligned_cols=140 Identities=49% Similarity=0.957 Sum_probs=137.4
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecC
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEG 167 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~n 167 (239)
.+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+|
T Consensus 23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 102 (162)
T 1ehw_A 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYN 102 (162)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCcccc
Q 026399 168 VITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNY 227 (239)
Q Consensus 168 AV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el~~~ 227 (239)
||+.||+++|||||..+.|+|||++||.+..+|+|||||++|+|++||++||+++|+.+|
T Consensus 103 aV~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 162 (162)
T 1ehw_A 103 VVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSW 162 (162)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGGCCCC
T ss_pred HHHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChhhcccC
Confidence 999999999999999999999999999999999999999999999999999999998876
No 28
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=2.8e-49 Score=323.76 Aligned_cols=133 Identities=50% Similarity=0.860 Sum_probs=131.0
Q ss_pred hceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeecCH
Q 026399 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGV 168 (239)
Q Consensus 89 ~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nA 168 (239)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+||||++|+|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCC-CCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCC
Q 026399 169 ITYGRKLIGATDPQ-KSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKP 221 (239)
Q Consensus 169 V~~~R~LiGptdp~-~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~ 221 (239)
|+.||+++|||||. .+.|+|||++||.+..+|+|||||++|+|++||++||++
T Consensus 82 V~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 135 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPG 135 (136)
T ss_dssp HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCCC
Confidence 99999999999999 999999999999999999999999999999999999985
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=8.6e-46 Score=319.39 Aligned_cols=138 Identities=41% Similarity=0.756 Sum_probs=134.2
Q ss_pred hhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHh-------------h----------------
Q 026399 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHY-------------H---------------- 138 (239)
Q Consensus 88 ~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY-------------~---------------- 138 (239)
.+|+||+|||||++++|++|+||++|+++||+|+++||+++++++|++|| .
T Consensus 14 ~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 93 (195)
T 1xqi_A 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIG 93 (195)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHS
T ss_pred hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhc
Confidence 45999999999999999999999999999999999999999999999999 7
Q ss_pred ----hhcCCCChHHHHHHHccCcEEEEEEeecCHHHHHHHHhCCCCCCCCCCCCcccccccccCc----------cEEEc
Q 026399 139 ----DLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR----------NIIHG 204 (239)
Q Consensus 139 ----~~~~k~~f~~Lv~~mtSGPvvaL~L~G~nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~----------NaVHg 204 (239)
+|++++||+.|++||+||||++|+|+|+|||+.||+++|||||.++.|+|||++||.+..+ |+|||
T Consensus 94 ~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vHg 173 (195)
T 1xqi_A 94 TDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHA 173 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEEE
T ss_pred cccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEEc
Confidence 8999999999999999999999999999999999999999999999999999999999888 99999
Q ss_pred CCChhhHHHHHhhcCCCCCcc
Q 026399 205 SDGPETAKDEIKLWFKPEDLV 225 (239)
Q Consensus 205 SDs~e~A~rEi~~FF~~~el~ 225 (239)
||++++|+|||++||++.|+.
T Consensus 174 SDS~esA~rEi~~~F~~~e~~ 194 (195)
T 1xqi_A 174 SDSPSEAEREIRFWFREEEVL 194 (195)
T ss_dssp CSSHHHHHHHHHHHCCGGGSC
T ss_pred CCCHHHHHHHHHHhCChhhcc
Confidence 999999999999999988875
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.97 E-value=5.3e-33 Score=257.96 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=109.8
Q ss_pred hhhceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhhhhcCCCChHHHHHHHccCcEEEEEEeec
Q 026399 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGE 166 (239)
Q Consensus 87 ~~~E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~~~~~k~~f~~Lv~~mtSGPvvaL~L~G~ 166 (239)
...|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|+ ++|++||+|||+|+|+|+|+
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~ 307 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGD 307 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEEST
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECc
Confidence 4569999999999999999999999999999999999999999999999999998 67999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCcccccccccCccEEEcCCChhhHHHHHhhcCCCCCc
Q 026399 167 GVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 224 (239)
Q Consensus 167 nAV~~~R~LiGptdp~~a~P~sLRa~fG~~~~~NaVHgSDs~e~A~rEi~~FF~~~el 224 (239)
|||+.||+++|+|+| .|+|||||++|+|++||++||+..+.
T Consensus 308 ~av~~~R~l~g~t~p-----------------gN~vHgSds~esA~~Ei~~fF~~~~~ 348 (352)
T 3bh7_B 308 GAVEVCQLIVNEIFN-----------------GTKMFVSESKETASGDVDSFYNFADI 348 (352)
T ss_dssp THHHHHHHHHHHHCT-----------------TSCEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCC-----------------CceEEecCCHHHHHHHHHHhcCcccc
Confidence 999999999999995 29999999999999999999976543
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=60.24 E-value=8.8 Score=28.44 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=37.3
Q ss_pred ceeEEEEcCcccccCcHHHHHHHHHHcCceEEeEEEeccCHHHHHHHhh
Q 026399 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYH 138 (239)
Q Consensus 90 E~Tl~LIKPDav~~g~iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~efY~ 138 (239)
...+++++|..+.. ..+|.+.|.+..-.|+++. .|+.++|+++..
T Consensus 4 ~~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRivD 48 (87)
T 3p04_A 4 QSTIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIVD 48 (87)
T ss_dssp CCSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHHH
T ss_pred CcEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHHH
Confidence 35689999999987 7899999998888888766 678999988753
No 32
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=24.81 E-value=1.1e+02 Score=24.12 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCceEEeEEEeccCHHHHHH
Q 026399 106 ISEIISRFERKGFKLVAIKIVVPSKEFAQK 135 (239)
Q Consensus 106 iG~II~~I~~~Gf~Iv~~Kmv~Ls~e~A~e 135 (239)
..++.+.|++.||.++.......+.+....
T Consensus 194 ~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~ 223 (243)
T 3bkw_A 194 VGTTLNALIRSGFAIEHVEEFCPTDAQITA 223 (243)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHcCCEeeeeccCCCchHhhhh
Confidence 578889999999999999998888776544
Done!