Query 026400
Match_columns 239
No_of_seqs 196 out of 1593
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 1.6E-57 3.4E-62 426.9 22.3 237 1-237 437-673 (759)
2 PLN02993 lupeol synthase 100.0 3.5E-57 7.5E-62 425.4 22.2 236 1-236 437-672 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 2.1E-49 4.6E-54 359.8 16.5 238 1-238 436-673 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 5.5E-48 1.2E-52 362.6 22.3 231 2-235 327-557 (634)
5 TIGR01507 hopene_cyclase squal 100.0 2.9E-44 6.4E-49 337.2 20.7 215 2-235 335-551 (635)
6 TIGR01787 squalene_cyclas squa 100.0 8.5E-44 1.8E-48 333.9 21.7 226 1-236 317-542 (621)
7 cd02892 SQCY_1 Squalene cyclas 100.0 1E-42 2.2E-47 328.7 21.9 231 1-235 327-557 (634)
8 PLN03012 Camelliol C synthase 100.0 1.4E-33 2.9E-38 265.6 17.4 190 3-226 513-724 (759)
9 cd02889 SQCY Squalene cyclase 100.0 1.9E-31 4E-36 235.6 21.8 220 2-228 45-264 (348)
10 PLN02993 lupeol synthase 100.0 4.6E-31 1E-35 249.0 17.3 189 3-225 513-723 (763)
11 TIGR03463 osq_cycl 2,3-oxidosq 100.0 5.5E-30 1.2E-34 241.1 16.8 187 3-226 400-606 (634)
12 TIGR01507 hopene_cyclase squal 100.0 3E-29 6.6E-34 235.9 18.0 182 2-226 402-600 (635)
13 COG1657 SqhC Squalene cyclase 100.0 8.9E-29 1.9E-33 223.1 10.9 214 3-236 221-434 (517)
14 TIGR01787 squalene_cyclas squa 99.9 8.3E-27 1.8E-31 219.3 18.0 186 2-228 387-592 (621)
15 cd02892 SQCY_1 Squalene cyclas 99.9 1E-23 2.2E-28 199.7 17.4 187 3-226 400-606 (634)
16 cd02889 SQCY Squalene cyclase 99.9 6.5E-22 1.4E-26 174.7 15.5 174 5-225 1-213 (348)
17 cd00688 ISOPREN_C2_like This g 99.9 8.8E-21 1.9E-25 161.5 18.0 179 2-226 51-229 (300)
18 PF13249 Prenyltrans_2: Prenyl 99.8 7.6E-21 1.7E-25 141.4 7.4 109 83-224 1-113 (113)
19 cd00688 ISOPREN_C2_like This g 99.8 1E-17 2.2E-22 142.6 17.0 176 2-227 103-282 (300)
20 KOG0497 Oxidosqualene-lanoster 99.8 9.7E-19 2.1E-23 160.4 10.4 189 3-225 512-722 (760)
21 cd02890 PTase Protein prenyltr 99.7 6.2E-17 1.3E-21 139.6 16.3 178 3-235 47-227 (286)
22 PF13249 Prenyltrans_2: Prenyl 99.7 6.5E-18 1.4E-22 125.6 6.9 112 9-174 1-112 (113)
23 cd02896 complement_C3_C4_C5 Pr 99.7 2.4E-16 5.1E-21 136.8 16.9 179 3-228 52-230 (297)
24 PLN03201 RAB geranylgeranyl tr 99.7 1.6E-15 3.5E-20 132.4 16.7 166 4-228 9-177 (316)
25 cd02897 A2M_2 Proteins similar 99.7 3.4E-15 7.3E-20 129.3 18.5 170 4-226 50-221 (292)
26 cd02890 PTase Protein prenyltr 99.7 9.7E-16 2.1E-20 132.2 14.7 175 6-235 2-178 (286)
27 cd02894 GGTase-II Geranylgeran 99.7 1.9E-15 4.2E-20 130.5 15.0 177 5-235 51-228 (287)
28 cd02894 GGTase-II Geranylgeran 99.7 4.3E-15 9.2E-20 128.4 15.4 173 4-235 101-277 (287)
29 cd02896 complement_C3_C4_C5 Pr 99.6 5.7E-15 1.2E-19 128.2 15.8 167 3-225 103-284 (297)
30 PF13243 Prenyltrans_1: Prenyl 99.6 1.1E-16 2.4E-21 118.4 4.0 108 79-218 1-108 (109)
31 TIGR02474 pec_lyase pectate ly 99.6 8E-15 1.7E-19 124.7 12.8 161 45-222 39-225 (290)
32 PLN03201 RAB geranylgeranyl tr 99.6 3.7E-14 8.1E-19 123.9 13.6 174 5-235 58-232 (316)
33 cd02897 A2M_2 Proteins similar 99.6 1.3E-13 2.8E-18 119.3 16.7 166 3-226 102-280 (292)
34 cd02893 FTase Protein farnesyl 99.5 3E-13 6.4E-18 117.4 16.4 178 4-235 48-227 (299)
35 PF13243 Prenyltrans_1: Prenyl 99.5 8.4E-15 1.8E-19 108.3 3.6 107 5-168 1-107 (109)
36 cd02895 GGTase-I Geranylgerany 99.5 8.5E-13 1.8E-17 115.0 15.7 191 6-236 52-249 (307)
37 cd02895 GGTase-I Geranylgerany 99.5 1E-12 2.2E-17 114.4 14.7 182 5-235 114-297 (307)
38 PLN02710 farnesyltranstransfer 99.5 2E-12 4.4E-17 116.4 15.5 177 5-235 94-271 (439)
39 COG1657 SqhC Squalene cyclase 99.5 1.4E-13 3.1E-18 125.0 8.0 183 3-225 281-481 (517)
40 cd02893 FTase Protein farnesyl 99.4 2.4E-12 5.3E-17 111.7 13.6 167 6-231 101-285 (299)
41 KOG0366 Protein geranylgeranyl 99.4 2.6E-12 5.5E-17 106.3 11.1 118 79-227 68-186 (329)
42 cd02891 A2M_like Proteins simi 99.4 9.1E-12 2E-16 106.8 12.1 116 75-217 47-172 (282)
43 cd02891 A2M_like Proteins simi 99.3 1.4E-10 3E-15 99.5 16.7 179 2-226 48-270 (282)
44 PLN02710 farnesyltranstransfer 99.3 6.7E-11 1.4E-15 106.6 12.7 128 74-229 89-217 (439)
45 PF07678 A2M_comp: A-macroglob 99.2 3E-10 6.5E-15 96.0 14.3 179 8-225 2-231 (246)
46 TIGR02474 pec_lyase pectate ly 99.1 1.6E-09 3.5E-14 92.5 12.3 150 1-170 65-222 (290)
47 KOG0366 Protein geranylgeranyl 99.0 4.1E-09 8.8E-14 87.5 11.9 167 6-229 117-285 (329)
48 COG5029 CAL1 Prenyltransferase 98.9 3.3E-08 7.1E-13 84.2 12.6 160 7-227 130-296 (342)
49 PF07678 A2M_comp: A-macroglob 98.9 1.1E-08 2.3E-13 86.6 9.6 108 82-215 2-125 (246)
50 PF09492 Pec_lyase: Pectic aci 98.8 1.1E-08 2.3E-13 87.5 5.8 160 47-223 36-221 (289)
51 KOG0367 Protein geranylgeranyl 98.8 1.1E-07 2.3E-12 80.5 11.1 189 8-235 63-260 (347)
52 COG5029 CAL1 Prenyltransferase 98.7 2.8E-07 6.1E-12 78.6 12.4 151 48-234 103-254 (342)
53 KOG0365 Beta subunit of farnes 98.6 8.9E-07 1.9E-11 76.4 12.9 128 73-228 116-244 (423)
54 PF09492 Pec_lyase: Pectic aci 98.3 1E-06 2.2E-11 75.5 6.3 149 1-173 60-220 (289)
55 KOG0367 Protein geranylgeranyl 98.3 5.2E-06 1.1E-10 70.4 10.0 128 79-231 176-305 (347)
56 KOG0365 Beta subunit of farnes 98.3 9.2E-06 2E-10 70.2 11.5 165 3-226 120-291 (423)
57 PF00432 Prenyltrans: Prenyltr 98.2 3.2E-06 6.9E-11 52.0 5.4 41 156-196 3-44 (44)
58 PF01122 Cobalamin_bind: Eukar 98.2 2E-05 4.4E-10 68.6 11.5 92 126-224 185-279 (326)
59 COG1689 Uncharacterized protei 98.0 3.9E-05 8.5E-10 62.5 8.5 65 5-97 8-74 (274)
60 PF00432 Prenyltrans: Prenyltr 97.8 1.6E-05 3.4E-10 48.9 1.9 31 204-234 2-32 (44)
61 COG1689 Uncharacterized protei 97.7 0.00028 6.1E-09 57.6 9.1 61 124-194 208-270 (274)
62 PF01122 Cobalamin_bind: Eukar 97.2 0.00089 1.9E-08 58.5 6.6 107 48-194 185-292 (326)
63 TIGR01577 oligosac_amyl oligos 96.5 0.026 5.6E-07 54.1 10.5 120 49-194 297-425 (616)
64 TIGR01535 glucan_glucosid gluc 96.2 0.05 1.1E-06 52.2 10.8 155 2-194 250-414 (648)
65 PF07470 Glyco_hydro_88: Glyco 96.1 0.038 8.2E-07 48.7 9.0 96 130-225 189-300 (336)
66 PLN02592 ent-copalyl diphospha 96.1 0.013 2.9E-07 57.1 6.3 58 155-215 116-176 (800)
67 PLN02592 ent-copalyl diphospha 95.4 0.021 4.6E-07 55.8 4.8 63 77-167 115-177 (800)
68 PLN02279 ent-kaur-16-ene synth 94.6 0.038 8.3E-07 54.1 4.2 62 77-164 73-134 (784)
69 PLN02279 ent-kaur-16-ene synth 94.4 0.059 1.3E-06 52.8 4.9 58 154-214 73-135 (784)
70 PF07470 Glyco_hydro_88: Glyco 94.1 0.67 1.5E-05 40.8 10.7 101 76-194 214-331 (336)
71 cd00249 AGE AGE domain; N-acyl 94.0 4.1 8.9E-05 36.2 15.8 139 5-173 16-158 (384)
72 PF07944 DUF1680: Putative gly 93.4 1.5 3.3E-05 41.2 12.1 146 1-163 9-157 (520)
73 TIGR01535 glucan_glucosid gluc 92.4 4.2 9.1E-05 39.3 13.8 73 2-89 313-385 (648)
74 KOG1366 Alpha-macroglobulin [P 91.2 0.8 1.7E-05 47.9 7.9 94 130-225 948-1046(1436)
75 KOG1366 Alpha-macroglobulin [P 91.0 0.41 9E-06 49.9 5.7 71 80-174 974-1044(1436)
76 cd00249 AGE AGE domain; N-acyl 90.3 3.3 7.2E-05 36.8 10.3 128 78-223 15-159 (384)
77 COG2373 Large extracellular al 88.1 3.9 8.4E-05 43.6 10.1 56 47-102 1168-1224(1621)
78 COG2373 Large extracellular al 87.9 2.4 5.2E-05 45.0 8.5 95 122-218 1163-1268(1621)
79 TIGR01577 oligosac_amyl oligos 86.9 2.2 4.8E-05 40.9 7.2 68 154-225 256-336 (616)
80 PF07221 GlcNAc_2-epim: N-acyl 85.4 4.3 9.2E-05 35.7 7.8 94 127-225 20-127 (346)
81 COG4225 Predicted unsaturated 83.7 4.3 9.2E-05 35.9 6.7 78 76-171 231-308 (357)
82 COG4225 Predicted unsaturated 80.6 17 0.00037 32.2 9.3 93 130-222 206-310 (357)
83 PF07944 DUF1680: Putative gly 78.3 7.5 0.00016 36.5 7.0 86 129-218 61-166 (520)
84 COG1331 Highly conserved prote 74.3 38 0.00082 32.8 10.3 66 93-174 251-317 (667)
85 PF10022 DUF2264: Uncharacteri 68.8 88 0.0019 28.1 16.5 101 52-183 158-262 (361)
86 PLN03009 cellulase 61.7 52 0.0011 30.9 8.4 35 140-174 103-137 (495)
87 COG2942 N-acyl-D-glucosamine 2 60.5 49 0.0011 29.9 7.7 84 127-215 54-150 (388)
88 COG3387 SGA1 Glucoamylase and 57.2 99 0.0021 29.9 9.7 38 49-97 287-324 (612)
89 PF00759 Glyco_hydro_9: Glycos 54.4 1.7E+02 0.0037 26.6 10.8 139 76-217 97-249 (444)
90 KOG3760 Heparan sulfate-glucur 52.7 20 0.00043 32.5 3.9 70 153-222 379-463 (594)
91 cd04791 LanC_SerThrkinase Lant 51.3 1.6E+02 0.0034 25.2 10.8 81 73-173 101-182 (321)
92 KOG3760 Heparan sulfate-glucur 50.3 67 0.0015 29.3 6.8 25 3-30 380-404 (594)
93 PLN02909 Endoglucanase 47.8 2.4E+02 0.0053 26.4 11.5 91 76-168 123-223 (486)
94 PF07221 GlcNAc_2-epim: N-acyl 47.5 43 0.00093 29.4 5.4 99 50-172 21-122 (346)
95 cd04794 euk_LANCL eukaryotic L 47.1 2E+02 0.0043 25.2 10.9 25 201-225 186-210 (343)
96 PF03991 Prion_octapep: Copper 41.9 13 0.00027 14.2 0.5 6 219-224 3-8 (8)
97 PF10022 DUF2264: Uncharacteri 40.4 2.6E+02 0.0056 25.1 9.1 67 154-226 132-198 (361)
98 COG1331 Highly conserved prote 38.6 3.9E+02 0.0084 26.2 11.6 41 49-93 410-450 (667)
99 COG3533 Uncharacterized protei 38.5 2.1E+02 0.0045 27.1 8.2 87 72-170 84-170 (589)
100 cd04794 euk_LANCL eukaryotic L 38.2 1.1E+02 0.0023 26.9 6.4 26 150-175 184-209 (343)
101 PF05592 Bac_rhamnosid: Bacter 36.1 2.6E+02 0.0055 26.0 8.9 79 75-169 167-246 (509)
102 PF09282 Mago-bind: Mago bindi 35.2 5.8 0.00013 21.4 -1.3 13 162-174 4-16 (27)
103 PF15144 DUF4576: Domain of un 31.9 51 0.0011 22.6 2.5 26 76-101 55-80 (88)
104 cd04791 LanC_SerThrkinase Lant 30.3 3.4E+02 0.0074 23.1 13.2 44 50-97 139-183 (321)
105 PLN02308 endoglucanase 29.5 3E+02 0.0065 25.9 8.0 90 77-168 116-215 (492)
106 PLN02345 endoglucanase 28.8 3.7E+02 0.008 25.1 8.4 90 76-167 85-184 (469)
107 cd00194 UBA Ubiquitin Associat 28.0 1E+02 0.0022 17.3 3.1 24 185-214 15-38 (38)
108 COG3387 SGA1 Glucoamylase and 27.6 2.1E+02 0.0045 27.7 6.8 47 180-230 535-581 (612)
109 COG2942 N-acyl-D-glucosamine 2 24.6 5.4E+02 0.012 23.4 12.2 95 51-168 56-152 (388)
110 PF00759 Glyco_hydro_9: Glycos 24.5 1E+02 0.0022 28.0 4.0 26 148-173 92-117 (444)
111 cd04792 LanM-like LanM-like pr 24.4 6.6E+02 0.014 25.0 9.9 132 53-222 544-686 (825)
112 KOG2787 Lanthionine synthetase 23.9 5.3E+02 0.011 23.1 10.0 29 76-104 244-272 (403)
113 PF00627 UBA: UBA/TS-N domain; 23.6 1.5E+02 0.0032 16.7 3.4 20 187-212 18-37 (37)
114 PLN02909 Endoglucanase 21.9 97 0.0021 29.0 3.3 21 202-222 123-143 (486)
115 TIGR03046 PS_II_psbV2 photosys 21.3 2.5E+02 0.0054 22.0 5.0 59 153-225 95-153 (155)
116 PF05592 Bac_rhamnosid: Bacter 20.8 6.4E+02 0.014 23.3 8.6 66 153-218 168-246 (509)
117 PF11329 DUF3131: Protein of u 20.4 4.1E+02 0.0088 24.0 6.8 91 49-148 33-126 (367)
118 PLN02266 endoglucanase 20.3 7.4E+02 0.016 23.4 12.1 90 76-167 133-232 (510)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.6e-57 Score=426.92 Aligned_cols=237 Identities=57% Similarity=1.165 Sum_probs=223.3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHH
Q 026400 1 MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFY 80 (239)
Q Consensus 1 ~~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~ 80 (239)
+++.|.||++||+++|++++++|+|..++|+.++|||+|++.+++|||+||||++|+|++.+...++++.+.++..+++.
T Consensus 437 ~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~ 516 (759)
T PLN03012 437 IPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLH 516 (759)
T ss_pred chHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999998777766666566778889999
Q ss_pred hhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHH
Q 026400 81 DAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGV 160 (239)
Q Consensus 81 ~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~ 160 (239)
+||+||+++||+||||++|+.+++..|++.+|++|.|+++|+|++|++||++||.+|..+++..|.++.++++++|+||+
T Consensus 517 ~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv 596 (759)
T PLN03012 517 DAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAA 596 (759)
T ss_pred HHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888788889999999
Q ss_pred HHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccccC
Q 026400 161 KFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNR 237 (239)
Q Consensus 161 ~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~~~ 237 (239)
+||++.|++||||+|+||++++|+|++||.||..+|.++.+++.|+||++||+++|++|||||+++.||.++.|+.+
T Consensus 597 ~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~ 673 (759)
T PLN03012 597 EYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQ 673 (759)
T ss_pred HHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCC
Confidence 99999999999999999999999999999999999987645699999999999999999999999999999999874
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=3.5e-57 Score=425.38 Aligned_cols=236 Identities=53% Similarity=1.124 Sum_probs=222.3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHH
Q 026400 1 MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFY 80 (239)
Q Consensus 1 ~~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~ 80 (239)
+++.|+||++||+++|++++++|+|+.++|+.++|||+|++.+++|||+||||++|+|++.+.+.|++..|.++..+++.
T Consensus 437 ~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~ 516 (763)
T PLN02993 437 TDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLY 516 (763)
T ss_pred cCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999998888877765566677889999
Q ss_pred hhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHH
Q 026400 81 DAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGV 160 (239)
Q Consensus 81 ~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~ 160 (239)
+||+||+++||+||||++|+.+++..|++.+|++|.|+++|+|+++++||++||.+|..+++.+|.++.++++++|+||+
T Consensus 517 ~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv 596 (763)
T PLN02993 517 DSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAV 596 (763)
T ss_pred HHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987678888788899999999
Q ss_pred HHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCcccc
Q 026400 161 KFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 236 (239)
Q Consensus 161 ~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~~ 236 (239)
+||++.|++||||+|+||++++|+|+.||.||..+|.++.+.+.|+||++||+++|++|||||+++.||.++.|+.
T Consensus 597 ~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~ 672 (763)
T PLN02993 597 QFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIP 672 (763)
T ss_pred HHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCccccc
Confidence 9999999999999999999999999999999999998764458999999999999999999999999999999985
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-49 Score=359.77 Aligned_cols=238 Identities=58% Similarity=1.098 Sum_probs=231.0
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHH
Q 026400 1 MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFY 80 (239)
Q Consensus 1 ~~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~ 80 (239)
|+++|++|.+||.++|..++++|+...+||+.++|||+||+.+++|+++||||+++.+++.++.+|.++.+..++.+++.
T Consensus 436 ~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~ 515 (760)
T KOG0497|consen 436 FRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLY 515 (760)
T ss_pred HHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHH
Confidence 57899999999999999999999988999999999999999999999999999999999999988888899999999999
Q ss_pred hhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHH
Q 026400 81 DAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGV 160 (239)
Q Consensus 81 ~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~ 160 (239)
++|+.|+.+|+.+||+..|++.++..||+.+++.|.|.++|+++.|++||+.+|.+|..+.+.+|++++.+++..|.+|+
T Consensus 516 dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av 595 (760)
T KOG0497|consen 516 DAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAV 595 (760)
T ss_pred HHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccccCC
Q 026400 161 KFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRI 238 (239)
Q Consensus 161 ~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~~~~ 238 (239)
+||++.|.+||+|+|.||+|++|+|.+++.+|.++|..+.+.+.++||++||++.|++|||||+++.||.++.|+.+.
T Consensus 596 ~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~ 673 (760)
T KOG0497|consen 596 EFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLE 673 (760)
T ss_pred HHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccccc
Confidence 999999999999999999999999999999999999988789999999999999999999999999999999999864
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=5.5e-48 Score=362.64 Aligned_cols=231 Identities=37% Similarity=0.692 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
+++|+||++||+++|+.++ .|+|..++|+..+|||+|++.+++|||+||||++|+||+.+.+.+... ...+..+++.+
T Consensus 327 ~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~-~~~~~~~~l~~ 404 (634)
T TIGR03463 327 RRMLERAARFLEANQMLED-TAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNP-EERVPQARLQD 404 (634)
T ss_pred hHHHHHHHHHHHHhcCCcC-CCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcc-cccccHHHHHH
Confidence 5789999999999999765 589999999999999999999999999999999999999876532100 01246789999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
||+||+++||+||||+.|+.++++.||+.+|+.|.|++.++|++++++|++||++|..++...+.++.++++++|+||++
T Consensus 405 av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~ 484 (634)
T TIGR03463 405 AVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVR 484 (634)
T ss_pred HHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999876666666788899999999
Q ss_pred HHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 162 FTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
||++.|++||+|++.||.+++|+|++++.||..+|.+. .++.++||++||+++|++||||++.+.++..+.|+
T Consensus 485 ~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~ 557 (634)
T TIGR03463 485 FLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASP-DDMALQRAAAWLRSYQRADGGWGEVYESCLQARYV 557 (634)
T ss_pred HHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCccCccCcccccccc
Confidence 99999999999999999999999999999999999876 57999999999999999999999999998877775
No 5
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=2.9e-44 Score=337.22 Aligned_cols=215 Identities=25% Similarity=0.395 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
++.|+||++||++.|+.. +|+|..++++..+|||+|++.+++|||+||||++|+||..++ .|+ .+...++|++
T Consensus 335 ~p~l~kA~~~L~~~Qi~~--~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~-~~~----~~~~~~~i~r 407 (635)
T TIGR01507 335 HDALVKAGEWLLDKQITV--PGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR-LPD----ERRRRDAMTK 407 (635)
T ss_pred CHHHHHHHHHHHhhcccC--CCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC-CCc----cccchHHHHH
Confidence 468999999999999974 799999999999999999999999999999999999999873 222 2346789999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhh--hhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDE--VIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNG 159 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra 159 (239)
|++||+++||+||||+.|+.+++..+++.+| |++ .|+|++++++|+++|++|..++... .+++|+||
T Consensus 408 a~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~----f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~-------~~~~i~ra 476 (635)
T TIGR01507 408 AFRWIAGMQSSNGGWGAFDVDNTSDLLNHIP----FCDFGAVTDPPTADVTARVLECLGSFGYDD-------AWPVIERA 476 (635)
T ss_pred HHHHHHHhcCCCCCEecccCCcchhHHhcCC----ccccccccCCCCccHHHHHHHHHHHhCCCc-------hhHHHHHH
Confidence 9999999999999999999888888888888 544 7889999999999999999876311 15799999
Q ss_pred HHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 160 VKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 160 ~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
++||++.|++||+|.|.|+++++|+|+.+|.+|...|.+. .++.|+||++||+++|++||||++.+.|++++.|.
T Consensus 477 v~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~-~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~ 551 (635)
T TIGR01507 477 VEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGIDT-REPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYA 551 (635)
T ss_pred HHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCCCCccccccccc
Confidence 9999999999999999999999999999999999998875 57999999999999999999999999998887764
No 6
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=8.5e-44 Score=333.92 Aligned_cols=226 Identities=36% Similarity=0.714 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHH
Q 026400 1 MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFY 80 (239)
Q Consensus 1 ~~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~ 80 (239)
+++.|.+|++||+++|++++++|+|..+.++..+|||+|++.+++|||+|||+.+++++..+... ..+...++++
T Consensus 317 ~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~-----~~~~~~~~l~ 391 (621)
T TIGR01787 317 FHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQE-----DEHVKRDRLR 391 (621)
T ss_pred cCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcC-----cccccHHHHH
Confidence 35789999999999999988889999876666679999999999999999999999887555431 1345789999
Q ss_pred hhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHH
Q 026400 81 DAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGV 160 (239)
Q Consensus 81 ~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~ 160 (239)
++++||+++||+||||++|+.+++..+++.+++.|.|.+.|+|++++++|+++|++|..++. +.++++++|+||+
T Consensus 392 ~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~-----r~~~~~~~i~rAl 466 (621)
T TIGR01787 392 DAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGH-----RADEIRNVLERAL 466 (621)
T ss_pred HHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcC-----ccHhHHHHHHHHH
Confidence 99999999999999999999888888999999999999999999999999999999998752 2234568999999
Q ss_pred HHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCcccc
Q 026400 161 KFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 236 (239)
Q Consensus 161 ~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~~ 236 (239)
+||++.|++||+|++.||.+++|+|++++.+|..+|....+.+.+++|++||+++|++|||||+.+.++.++.|..
T Consensus 467 ~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~ 542 (621)
T TIGR01787 467 EYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVG 542 (621)
T ss_pred HHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCC
Confidence 9999999999999999999999999999999999987643348999999999999999999999999988888753
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=1e-42 Score=328.70 Aligned_cols=231 Identities=47% Similarity=0.881 Sum_probs=202.3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHH
Q 026400 1 MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFY 80 (239)
Q Consensus 1 ~~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~ 80 (239)
+++.|++|++||+++|+ ++.+|+|+.++++.++|||+|++.++++||+||||++|+||+.++..++. +..++.++|.
T Consensus 327 ~~~~l~ka~~wL~~~Q~-~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~--~~~~~~~~i~ 403 (634)
T cd02892 327 FDPALKKALDWLLESQI-LDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPF--GEKVSRERLY 403 (634)
T ss_pred chHHHHHHHHHHHHHHc-CCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCc--chhhHHHHHH
Confidence 35789999999999998 33579999999999999999999999999999999999999998765431 3446789999
Q ss_pred hhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHH
Q 026400 81 DAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGV 160 (239)
Q Consensus 81 ~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~ 160 (239)
+|++||+++||+||||+.|+.+++..|+..+.+.|.+++.++|++++++|+++|++|..++...+.++. +++++++||+
T Consensus 404 ~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~-~i~~~i~rAv 482 (634)
T cd02892 404 DAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRR-EIDPAIRRAV 482 (634)
T ss_pred HHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHH-HHHHHHHHHH
Confidence 999999999999999998988777665666667788888899999999999999999998876555444 7788999999
Q ss_pred HHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 161 KFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 161 ~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
+||++.|++||+|++.|+.+++|.|++++.||..+|.....++.++++++||+++|++||||++.+.++.++.|.
T Consensus 483 ~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~ 557 (634)
T cd02892 483 KYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYA 557 (634)
T ss_pred HHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccC
Confidence 999999999999999999999999999999999998762257899999999999999999999988887766653
No 8
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.4e-33 Score=265.62 Aligned_cols=190 Identities=21% Similarity=0.328 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCccc--------ccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCC
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWT--------FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKM 74 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~--------~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~ 74 (239)
+++.+||+||+++|+.+ |+|++|++.+. ..|. |.+....++.+|||+.+|.||..++..++..+.+.+
T Consensus 513 ~~l~~av~wlL~mQn~d---GGwaafe~~~~-~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i 588 (759)
T PLN03012 513 EQLHDAVNILLSLQSKN---GGMTAWEPAGA-PEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEI 588 (759)
T ss_pred HHHHHHHHHHHhccCCC---CCEeeecCCcc-hHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhh
Confidence 58999999999999985 99999988653 3554 776666788899999999999999876654333333
Q ss_pred ChHHHHhhhhHHhhcccCCccee-eccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhH
Q 026400 75 EPERFYDAANFMLYIQSKTGGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~~dGgw~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
+++|++||+||++.|++||||. .|..+ |..+|+.||.+|..++..+++ .
T Consensus 589 -~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~-----------------------y~YgT~~aL~aL~a~g~~~~~------~ 638 (759)
T PLN03012 589 -NAFIKKAAEYIENIQMLDGSWYGNWGIC-----------------------FTYGTWFALAGLAAAGKTFND------C 638 (759)
T ss_pred -HHHHHHHHHHHHHhcCCCCCCccccccc-----------------------CCcHHHHHHHHHHHhCccCCC------c
Confidence 7899999999999999999995 33321 345899999999999876543 3
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCCc-------------chhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC
Q 026400 154 NFITNGVKFTEDSQKLDGSWYGTWGV-------------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~g~~g~-------------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 220 (239)
++|+||++||++.|++||||++.|+. +.+++|++||+||.++|.+..+.+.++||++||++.|.+||
T Consensus 639 ~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG 718 (759)
T PLN03012 639 EAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENG 718 (759)
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCC
Confidence 79999999999999999999877732 45699999999999999865445789999999999999999
Q ss_pred ccCCCC
Q 026400 221 GWGESY 226 (239)
Q Consensus 221 gWg~~~ 226 (239)
+|.+..
T Consensus 719 ~W~q~~ 724 (759)
T PLN03012 719 DFPQQE 724 (759)
T ss_pred CCCCce
Confidence 998754
No 9
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=100.00 E-value=1.9e-31 Score=235.60 Aligned_cols=220 Identities=46% Similarity=0.883 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
.+.++||++||+++|..... ++|...+++...|||+|+...+.++++|+|+.++.+|+.++..++. +..++.+.|.+
T Consensus 45 ~~~~~ka~~~l~~~q~~~~~-~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~--~~~~~~~~i~~ 121 (348)
T cd02889 45 DPALKKALEWLLKSQIRDNP-DDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPD--GKKVSRERLYD 121 (348)
T ss_pred CHHHHHHHHHHHhcCCCCCC-CchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcc--cchhhHHHHHH
Confidence 46899999999999976543 4477778888999999998877789999999999999998765431 33567899999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||+++|++||||..+.......+++. +.+.+.+...+++.+.+|+++|.+|..++...+.++ .++.+.++++++
T Consensus 122 a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~-~~~~~~i~~a~~ 198 (348)
T cd02889 122 AVDWLLSMQNSNGGFAAFEPDNTYKYLEL--IPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHR-REIDPAIRRAVK 198 (348)
T ss_pred HHHHHHHhccCCCCEeeecCCccHHHHhc--CchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchH-HHHHHHHHHHHH
Confidence 99999999999999987765544333322 111233344566778899999999999876433322 356689999999
Q ss_pred HHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCc
Q 026400 162 FTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS 228 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s 228 (239)
||++.|++||+|.+.|+.+++|.|++++.+|..+|.+. ..+.++++++||+++|++||||+....+
T Consensus 199 ~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~~-~~~~~~~~~~~L~~~Q~~dG~w~~~~~~ 264 (348)
T cd02889 199 YLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGEDE-NSPYVRKACDWLLSKQNPDGGWGESYES 264 (348)
T ss_pred HHHHhCCCCCCccccCCCcchHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCcCCcccc
Confidence 99999999999988888788999999999999998764 4789999999999999999999986543
No 10
>PLN02993 lupeol synthase
Probab=99.97 E-value=4.6e-31 Score=248.99 Aligned_cols=189 Identities=19% Similarity=0.306 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCccc--------ccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCC
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWT--------FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKM 74 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~--------~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~ 74 (239)
++|.+|++||+++|+.+ |+|++|.+.+. ..|. |.+....++.+|||+.+|++|..+++..|..+.+.+
T Consensus 513 ~~l~~av~wlL~mQn~d---GG~aafe~~~~-~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei 588 (763)
T PLN02993 513 EQLYDSVNLLLSLQSEN---GGVTAWEPVRA-YKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEI 588 (763)
T ss_pred HHHHHHHHHHHhhccCC---CCEEeeeCCCc-hhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhH
Confidence 58999999999999985 99999987553 3442 333344578899999999999998764443223333
Q ss_pred ChHHHHhhhhHHhhcccCCcce-eeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhH
Q 026400 75 EPERFYDAANFMLYIQSKTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~~dGgw-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
+++|++||+||++.|++|||| +.|.. .++..|+.+|.+|..++..++. .
T Consensus 589 -~~~i~rAv~yL~~~Q~~DGSW~G~Wgv-----------------------~y~YgT~~aL~aL~a~G~~~~~------~ 638 (763)
T PLN02993 589 -IKSIEKAVQFIESKQTPDGSWYGNWGI-----------------------CFIYATWFALGGLAAAGKTYND------C 638 (763)
T ss_pred -HHHHHHHHHHHHHhcCCCCCccccccc-----------------------ccCcHHHHHHHHHHHcCCCCCC------c
Confidence 688999999999999999999 44432 2455899999999988865332 3
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCC-------------cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC
Q 026400 154 NFITNGVKFTEDSQKLDGSWYGTWG-------------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~g~~g-------------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 220 (239)
++|+||++||++.|++||+|++.+. .+.+++|++|++||.++|.+..+.+.++||++||++.|.+||
T Consensus 639 ~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G 718 (763)
T PLN02993 639 LAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENG 718 (763)
T ss_pred HHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCC
Confidence 6899999999999999999976552 255699999999999999764345789999999999999999
Q ss_pred ccCCC
Q 026400 221 GWGES 225 (239)
Q Consensus 221 gWg~~ 225 (239)
+|.+.
T Consensus 719 ~W~q~ 723 (763)
T PLN02993 719 DFPQQ 723 (763)
T ss_pred CCCCc
Confidence 99885
No 11
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.97 E-value=5.5e-30 Score=241.09 Aligned_cols=187 Identities=18% Similarity=0.263 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcc--------cccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCC
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGW--------TFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKM 74 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw--------~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~ 74 (239)
++|.+|++||+++|+.| |+|+.|.++. .+.| .|.+....++.+|||+.+|.+|..++...+.... ..
T Consensus 400 ~~l~~av~~Ll~~Qn~d---GGw~~y~~~~-~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~-~~ 474 (634)
T TIGR03463 400 ARLQDAVEFILSRQNED---GGFGTYERQR-GPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPD-GR 474 (634)
T ss_pred HHHHHHHHHHHHhcCCC---CCEeccCCCC-cHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhh-hH
Confidence 58999999999999985 9999987654 5666 3444455678899999999999998754332111 11
Q ss_pred ChHHHHhhhhHHhhcccCCcceee-ccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhH
Q 026400 75 EPERFYDAANFMLYIQSKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~~dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
..++|++|++||++.|++||||.. |.. .+...|+.+|++|..++.... +
T Consensus 475 i~~ai~rav~~L~~~Q~~dGsW~g~Wg~-----------------------~~~Y~T~~al~aL~~~G~~~~-------~ 524 (634)
T TIGR03463 475 ITRAISRGVRFLRSRQREDGSFPGSWGV-----------------------CFTYGTFHGVMGLRAAGASPD-------D 524 (634)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccccCCC-----------------------CCcHHHHHHHHHHHHcCCCcC-------c
Confidence 257899999999999999999953 221 123469999999998765322 3
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCC-----------cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCcc
Q 026400 154 NFITNGVKFTEDSQKLDGSWYGTWG-----------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGW 222 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~g~~g-----------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgW 222 (239)
+.++||++||++.|++||+|++.|+ .+..+.|++||+||..+|.. ..+.++|+++||+++|++||||
T Consensus 525 ~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~--~~~~i~rgi~~L~~~Q~~dG~W 602 (634)
T TIGR03463 525 MALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEG--GHDAVQRGVAWLRSRQQEDGRW 602 (634)
T ss_pred HHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCc--CCHHHHHHHHHHHHhCCCCCCC
Confidence 7899999999999999999976553 35678999999999999865 4689999999999999999999
Q ss_pred CCCC
Q 026400 223 GESY 226 (239)
Q Consensus 223 g~~~ 226 (239)
++..
T Consensus 603 ~~~~ 606 (634)
T TIGR03463 603 PREP 606 (634)
T ss_pred CCCc
Confidence 9865
No 12
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.96 E-value=3e-29 Score=235.91 Aligned_cols=182 Identities=22% Similarity=0.361 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCC---CcccccCC--CCCCCCCcchHHHHHHHHHhcCCCCcccCCCCCh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISK---GGWTFSDK--DHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEP 76 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~---ggw~~~~~--~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~ 76 (239)
.++|.+|++||+++|+++ |+|++|.+.... +--+|.+. ...+|++|||+.+|+||..++. ...+
T Consensus 402 ~~~i~ra~~wLl~~Qn~d---Ggw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~--------~~~~ 470 (635)
T TIGR01507 402 RDAMTKAFRWIAGMQSSN---GGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGY--------DDAW 470 (635)
T ss_pred hHHHHHHHHHHHHhcCCC---CCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCC--------Cchh
Confidence 468999999999999985 999887643211 12245432 1346889999999999998753 1237
Q ss_pred HHHHhhhhHHhhcccCCcce-eeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF 155 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~ 155 (239)
++|++|++||+++|++|||| +.|.. .+...|+.+|++|...+.... .+.
T Consensus 471 ~~i~rav~~L~~~Q~~dG~W~g~wg~-----------------------~~~Y~T~~al~aL~~~g~~~~-------~~~ 520 (635)
T TIGR01507 471 PVIERAVEYLKREQEPDGSWFGRWGV-----------------------NYLYGTGAVLSALKAVGIDTR-------EPY 520 (635)
T ss_pred HHHHHHHHHHHHccCCCCCCccCCCC-----------------------ccccHHHHHHHHHHHcCCCcc-------cHH
Confidence 89999999999999999999 44432 234579999999998764211 478
Q ss_pred HHHHHHHHHhcccCCCCccCCC-----------CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCC
Q 026400 156 ITNGVKFTEDSQKLDGSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 156 i~ra~~~L~~~Q~~dG~w~g~~-----------g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
|+||++||++.|++||||+... |.++++.|++||.||..++.. +.+.|+||++||+++|++||||++
T Consensus 521 i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e 598 (635)
T TIGR01507 521 IQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRA--ESEAARRGVQYLVETQRPDGGWDE 598 (635)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999996321 356788999999999999876 468999999999999999999999
Q ss_pred CC
Q 026400 225 SY 226 (239)
Q Consensus 225 ~~ 226 (239)
.+
T Consensus 599 ~~ 600 (635)
T TIGR01507 599 PY 600 (635)
T ss_pred cc
Confidence 75
No 13
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.96 E-value=8.9e-29 Score=223.13 Aligned_cols=214 Identities=30% Similarity=0.566 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA 82 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~a 82 (239)
+++.+++.||+..|... ..+|+.. ++..+|+|+|+..+.++||+|+|+.++++|..... .+.+.++
T Consensus 221 ~aiaka~~~L~~kq~~~--~~~~~~~-~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~-----------~~~~~~~ 286 (517)
T COG1657 221 PAIAKALMFLLDKQVLK--YADWAVK-RKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQS-----------LPNFELG 286 (517)
T ss_pred HhHHhhhhhhHHHHHHH--hhccccc-cccCCCccceeecccCCCCchhhhHHHHHHHhhcc-----------hhhHHhh
Confidence 57899999999999986 5888887 88999999999999999999999999999998753 3556679
Q ss_pred hhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHH
Q 026400 83 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKF 162 (239)
Q Consensus 83 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~ 162 (239)
++|++.+||..|||..++..+...|++.++..+.+ .|+++++++||+.++.+|+.+....+.++ ..-|+++++|
T Consensus 287 l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~s~adct~~~~~~l~a~~~yl~~~~----~~~i~~a~e~ 360 (517)
T COG1657 287 LDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK--AMVDPSTADCTHRVVLALAALNAYLEAYD----GQPIERALEW 360 (517)
T ss_pred hhHhhhcccccCceeeeccccccHHHhhCCHhhcc--ccccCCcccCCCccHHHHhhhhhcccccc----CCcccHHHhh
Confidence 99999999999999999988888899888877644 78999999999999999998766544221 2458999999
Q ss_pred HHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCcccc
Q 026400 163 TEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 236 (239)
Q Consensus 163 L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~~ 236 (239)
|++.|.++|+|.+.|++|++|+|+.++.+++..|....+...+++++.||..+|++||||++.+.++..+.|+.
T Consensus 361 LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~ 434 (517)
T COG1657 361 LLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTG 434 (517)
T ss_pred hhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccccccc
Confidence 99999999999999999999999999999999998765678999999999999999999999999999998875
No 14
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.95 E-value=8.3e-27 Score=219.31 Aligned_cols=186 Identities=22% Similarity=0.328 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcc-----c---ccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCC
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGW-----T---FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEK 73 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw-----~---~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~ 73 (239)
.+++++|++||+++|+++ |+|+.|.+... ..| + |++....++.+|||+.+|+||..++.. .+
T Consensus 387 ~~~l~~a~~~Ll~~Qn~d---GGw~ay~~~~~-~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r------~~ 456 (621)
T TIGR01787 387 RDRLRDAVNWILGMQSSN---GGFAAYDPDNT-GEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHR------AD 456 (621)
T ss_pred HHHHHHHHHHHHHHcCCC---CCEeeeccccc-hHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCc------cH
Confidence 367899999999999985 99998764321 112 3 555444567889999999999987631 11
Q ss_pred CChHHHHhhhhHHhhcccCCccee-eccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhh
Q 026400 74 MEPERFYDAANFMLYIQSKTGGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV 152 (239)
Q Consensus 74 ~~~~~i~~av~~Ll~~Q~~dGgw~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~ 152 (239)
...+.|++|++||+++|++||+|. .|.. .+...|+.++.+|..++.....
T Consensus 457 ~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-----------------------~y~YgT~~al~aL~~~G~~~~~------ 507 (621)
T TIGR01787 457 EIRNVLERALEYLRREQRADGSWFGRWGV-----------------------NYTYGTGFVLSALAAAGRTYRN------ 507 (621)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccCCC-----------------------CCchhHHHHHHHHHHhCCcccC------
Confidence 246889999999999999999994 2221 2345699999999998753221
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCC-----------CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCc
Q 026400 153 NNFITNGVKFTEDSQKLDGSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGG 221 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~dG~w~g~~-----------g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGg 221 (239)
.+.++||++||++.|++||+|+..+ +.+.+..|++||+||..++.. ..+.|+|+++||+++|++||+
T Consensus 508 ~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~--~~~ai~rgv~~L~~~Q~~dG~ 585 (621)
T TIGR01787 508 CPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEA--DSEAIERGVKYLLETQRPDGD 585 (621)
T ss_pred CHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHhCCCCCC
Confidence 2789999999999999999996442 245678999999999999875 357899999999999999999
Q ss_pred cCCCCCc
Q 026400 222 WGESYLS 228 (239)
Q Consensus 222 Wg~~~~s 228 (239)
|++...+
T Consensus 586 w~~~~~~ 592 (621)
T TIGR01787 586 WPQEYIT 592 (621)
T ss_pred CCCcccc
Confidence 9986643
No 15
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.91 E-value=1e-23 Score=199.71 Aligned_cols=187 Identities=24% Similarity=0.375 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcc-----cccC---CCCCCCCCcchHHHHHHHHHhcCCCCcccCCCC
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGW-----TFSD---KDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKM 74 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw-----~~~~---~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~ 74 (239)
+++.+|++||+++|++| |+|..+.+... +.| +++. ....++.+|||+.+|++|..++...+.... .
T Consensus 400 ~~i~~Av~wLl~~Qn~d---Ggf~~y~~~~~-~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~--~ 473 (634)
T cd02892 400 ERLYDAVDWLLGMQNSN---GGFAAFEPDNT-YHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRR--E 473 (634)
T ss_pred HHHHHHHHHHHhccCCC---CCEeeecCCCc-hhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHH--H
Confidence 57999999999999985 88987654332 222 2221 112357899999999999998653221000 1
Q ss_pred ChHHHHhhhhHHhhcccCCccee-eccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhH
Q 026400 75 EPERFYDAANFMLYIQSKTGGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~~dGgw~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
..+++++|++||++.|++||||. .|.. .++..|+.+|.+|..++..+. . +
T Consensus 474 i~~~i~rAv~~L~~~Q~~DGsW~g~wg~-----------------------~~~Y~T~~al~AL~~~G~~~~-~-----~ 524 (634)
T cd02892 474 IDPAIRRAVKYLLREQEPDGSWYGRWGV-----------------------CYIYGTWFALEALAAAGEDYE-N-----S 524 (634)
T ss_pred HHHHHHHHHHHHHHccCCCCCccccCCC-----------------------ccHHHHHHHHHHHHHhCCccc-C-----c
Confidence 24689999999999999999993 2221 134468899999998875311 1 3
Q ss_pred HHHHHHHHHHHhcccCCCCccCCC-----------CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCcc
Q 026400 154 NFITNGVKFTEDSQKLDGSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGW 222 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~g~~-----------g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgW 222 (239)
+.++++++||++.|++||+|.... +.+.++.|++||.+|..++.. +.+.++++++||+++|++||+|
T Consensus 525 ~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~--~~~~i~r~i~wL~~~Q~~~G~w 602 (634)
T cd02892 525 PYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDW 602 (634)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHcCCCCCCC
Confidence 689999999999999999996421 235678899999999999875 4789999999999999999999
Q ss_pred CCCC
Q 026400 223 GESY 226 (239)
Q Consensus 223 g~~~ 226 (239)
.+..
T Consensus 603 ~~~~ 606 (634)
T cd02892 603 PQEE 606 (634)
T ss_pred CCcc
Confidence 8854
No 16
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.88 E-value=6.5e-22 Score=174.71 Aligned_cols=174 Identities=24% Similarity=0.231 Sum_probs=129.9
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
|+++++||.++|++| |+|++.. +++.+|+.+++||...+.. +.+.+.++++++
T Consensus 1 ~~~~~~~L~~~Q~~d---------------G~W~~~~-----~~~~~Ta~~~~al~~~g~~-------~~~~~~~~ka~~ 53 (348)
T cd02889 1 IRRALDFLLSLQAPD---------------GHWPGEY-----SQVWDTALALQALLEAGLA-------PEFDPALKKALE 53 (348)
T ss_pred CchHHHHHHHhccCC---------------CCccccC-----CchHHHHHHHHHHHHcCCC-------CccCHHHHHHHH
Confidence 578999999999984 5565432 5688999999999987642 236789999999
Q ss_pred HHhhcc--------------cCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchh
Q 026400 85 FMLYIQ--------------SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKN 150 (239)
Q Consensus 85 ~Ll~~Q--------------~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~ 150 (239)
||++.| .++|||+ |..... .++.++.|+.++.+|..++...+. ...
T Consensus 54 ~l~~~q~~~~~~~~~~~~~~~~~Ggw~-y~~~~~------------------~~~~~~~Ta~~l~al~~~~~~~~~-~~~ 113 (348)
T cd02889 54 WLLKSQIRDNPDDWKVKYRHLRKGGWA-FSTANQ------------------GYPDSDDTAEALKALLRLQKKPPD-GKK 113 (348)
T ss_pred HHHhcCCCCCCCchhhcCCCCCCCcCc-ccCcCC------------------CCCCCCChHHHHHHHHHhhccCcc-cch
Confidence 999999 6899997 332110 123456899999999988754321 112
Q ss_pred hhHHHHHHHHHHHHhcccCCCCccCCCC--------------------cchhhHHHHHHHHHHHcCccCCC-----HHHH
Q 026400 151 EVNNFITNGVKFTEDSQKLDGSWYGTWG--------------------VCFIYSTWWAISGLVAAEKTYSN-----CLAI 205 (239)
Q Consensus 151 ~~~~~i~ra~~~L~~~Q~~dG~w~g~~g--------------------~~~~~~T~~al~aL~~~g~~~~~-----~~~i 205 (239)
...+.++++++||++.|++||+|..... ......|+++|.+|...+..... .+.+
T Consensus 114 ~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i 193 (348)
T cd02889 114 VSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAI 193 (348)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHH
Confidence 3367999999999999999999963211 12345699999999988764311 1689
Q ss_pred HHHHHHHHhccCCCCccCCC
Q 026400 206 RKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 206 ~~a~~~L~~~Q~~dGgWg~~ 225 (239)
+++++||++.|++||+|...
T Consensus 194 ~~a~~~L~~~q~~dG~w~~~ 213 (348)
T cd02889 194 RRAVKYLEREQEPDGSWYGR 213 (348)
T ss_pred HHHHHHHHHhCCCCCCcccc
Confidence 99999999999999999643
No 17
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.87 E-value=8.8e-21 Score=161.54 Aligned_cols=179 Identities=26% Similarity=0.317 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
...++++++||.+.|+.+ |+|+ +..... .+++.+|+.++++|..++..+ +...+.+.+
T Consensus 51 ~~~~~~~~~~l~~~q~~d---G~~~------------~~~~~~-~~~~~~T~~~~~~l~~~~~~~------~~~~~~~~~ 108 (300)
T cd00688 51 DENIEKGIQRLLSYQLSD---GGFS------------GWGGND-YPSLWLTAYALKALLLAGDYI------AVDRIDLAR 108 (300)
T ss_pred hHHHHHHHHHHHhccCCC---CCcc------------CCCCCC-CcchHhHHHHHHHHHHcCCcc------ccCHHHHHH
Confidence 457899999999999874 5544 322111 578999999999999886521 346788999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||+++|++||||......... ...+.+++..|+.+|.+|..++...+ .+.++++++
T Consensus 109 ~~~~l~~~q~~dG~~~~~~~~~~~--------------~~~~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~ 167 (300)
T cd00688 109 ALNWLLSLQNEDGGFREDGPGNHR--------------IGGDESDVRLTAYALIALALLGKLDP-------DPLIEKALD 167 (300)
T ss_pred HHHHHHHccCCCCCeeeecCCCCc--------------ccCCCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHH
Confidence 999999999999999855432110 01123456789999999999875322 367999999
Q ss_pred HHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCC
Q 026400 162 FTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 226 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~ 226 (239)
||.+.|++||+| ..++....+.|++++.+|...+.. ..+.++++++||+++|.++|||+...
T Consensus 168 ~l~~~q~~~g~~-~~~~~~~~~~t~~~~~aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~ 229 (300)
T cd00688 168 YLLSCQNYDGGF-GPGGESHGYGTACAAAALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGR 229 (300)
T ss_pred HHHHHhcCCCCc-CCCccccHHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCccc
Confidence 999999999999 667778889999999999998865 36889999999999999999998764
No 18
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.83 E-value=7.6e-21 Score=141.44 Aligned_cols=109 Identities=32% Similarity=0.442 Sum_probs=83.6
Q ss_pred hhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHH--HH
Q 026400 83 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN--GV 160 (239)
Q Consensus 83 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~r--a~ 160 (239)
|+||+++||+||||+.+ .. ++.+..|+.+|.+|..++...+ .++ |+
T Consensus 1 v~~L~~~Q~~dGgw~~~--~~--------------------~~~~~~T~~al~aL~~~g~~~~----------~~~~~~~ 48 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF--GG--------------------PSDVWDTAFALLALAALGEEPD----------RDRAAAV 48 (113)
T ss_dssp HHHHHHHB-TTSSBBSS--TS---------------------BEHHHHHHHHHHHHHHTSHHC----------HHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC--CC--------------------CCCHHHHHHHHHHHHHhCCccc----------HHHHHHH
Confidence 68999999999999854 11 2345679999999999875422 233 59
Q ss_pred HHHHhcccCCCCccCCC--CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCC
Q 026400 161 KFTEDSQKLDGSWYGTW--GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 161 ~~L~~~Q~~dG~w~g~~--g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
+||++.|++||+|.... ....++.|..++.+|...+... ..+.++++++||+++|++||||+.
T Consensus 49 ~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~-~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 49 EWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPD-DEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GG-CHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999999999997654 3456888999999999888775 368999999999999999999984
No 19
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.78 E-value=1e-17 Score=142.60 Aligned_cols=176 Identities=21% Similarity=0.187 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
.+.+.++++||++.|+.+ |+|....+...+ .....+++++|+.+|.+|..++..+ ..+.+.+
T Consensus 103 ~~~~~~~~~~l~~~q~~d---G~~~~~~~~~~~-------~~~~~~~~~~t~~al~aL~~~~~~~--------~~~~~~~ 164 (300)
T cd00688 103 RIDLARALNWLLSLQNED---GGFREDGPGNHR-------IGGDESDVRLTAYALIALALLGKLD--------PDPLIEK 164 (300)
T ss_pred HHHHHHHHHHHHHccCCC---CCeeeecCCCCc-------ccCCCCcccHHHHHHHHHHHcCCCC--------CcHHHHH
Confidence 356899999999999984 777644332111 1123467899999999999876411 2578999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||.++|++||||..+. .+++..|+.++.+|..++.. ....++++++
T Consensus 165 ~~~~l~~~q~~~g~~~~~~-----------------------~~~~~~t~~~~~aL~~~~~~--------~~~~~~~~~~ 213 (300)
T cd00688 165 ALDYLLSCQNYDGGFGPGG-----------------------ESHGYGTACAAAALALLGDL--------DSPDAKKALR 213 (300)
T ss_pred HHHHHHHHhcCCCCcCCCc-----------------------cccHHHHHHHHHHHHHcCCc--------chHHHHHHHH
Confidence 9999999999999992110 12345688999999987642 1367899999
Q ss_pred HHHhcccCCCCccCCC----CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCC
Q 026400 162 FTEDSQKLDGSWYGTW----GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL 227 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~----g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~ 227 (239)
||++.|.++|+|...+ .....+.|.+++.+|...+... ..+.++++++||+++|+++|+|+....
T Consensus 214 ~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~-~~~~~~~~~~~L~~~q~~~G~w~~~~~ 282 (300)
T cd00688 214 WLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLG-DLEDAEKLVKWLLSQQNEDGGFSSKPG 282 (300)
T ss_pred HHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhc-CcccHHHHHHHHHhccCCCCCcCcCCC
Confidence 9999999999996543 2344556777778888776531 357889999999999999999998554
No 20
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.78 E-value=9.7e-19 Score=160.36 Aligned_cols=189 Identities=21% Similarity=0.294 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcc--------cccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCC
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGW--------TFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKM 74 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw--------~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~ 74 (239)
+++-.||+.|+..|+.+ |++..+.+-+ ..-| .|.+....++.++||..++.||..+.+.-|.++.++
T Consensus 512 erL~dav~~Ll~lq~~~---Gg~~~~e~~r-~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~E- 586 (760)
T KOG0497|consen 512 ERLYDAVDVLLYLQSEN---GGFAAYEPAR-GYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKE- 586 (760)
T ss_pred HHHHHHHHHHHhhhhcc---Cccccccccc-hHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHH-
Confidence 57889999999999874 7777665532 2334 344445556779999999999999988766554444
Q ss_pred ChHHHHhhhhHHhhcccCCcce-eeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhH
Q 026400 75 EPERFYDAANFMLYIQSKTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~~dGgw-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
...+|.+||+||.+.|.+||+| +.|..+. ...|-.++.+|...|+.+.+ -
T Consensus 587 i~~~i~~av~~ie~~Q~~DGSWyGsWgvCF-----------------------tY~t~Fa~~gl~aaGkty~n------c 637 (760)
T KOG0497|consen 587 IEKSIEKAVEFIEKLQLPDGSWYGSWGVCF-----------------------TYGTWFALRGLAAAGKTYEN------C 637 (760)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccchhhHHH-----------------------HHHHHHhcchhhhcchhhhc------c
Confidence 3688999999999999999999 4454332 23467788899998876544 4
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCC-------------cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC
Q 026400 154 NFITNGVKFTEDSQKLDGSWYGTWG-------------VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~g~~g-------------~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 220 (239)
.+++||++||++.|++||+|+.++- .+.+.+|++|+++|..+|....+.-.+.||++.|++.|.++|
T Consensus 638 ~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nG 717 (760)
T KOG0497|consen 638 EAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENG 717 (760)
T ss_pred HHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccC
Confidence 7899999999999999999965431 245779999999999999875444489999999999999999
Q ss_pred ccCCC
Q 026400 221 GWGES 225 (239)
Q Consensus 221 gWg~~ 225 (239)
-|+..
T Consensus 718 dfpqq 722 (760)
T KOG0497|consen 718 DFPQQ 722 (760)
T ss_pred Ccchh
Confidence 99874
No 21
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.75 E-value=6.2e-17 Score=139.64 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhcc-CCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 3 PILMKAHDFLKNSQ-VTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q-~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
..++++++||+++| +++ |+|+ +. ....++...|..++.+|..++.. ........+
T Consensus 47 ~~~~~~i~~l~~~q~~~~---Ggf~------------~~--~~~~~~~~~T~~al~~l~llg~~-------~~~~~~~~~ 102 (286)
T cd02890 47 ENKDEIIDFIYSCQVNED---GGFG------------GG--PGQDPHLASTYAAVLSLAILGDD-------ALSRIDREK 102 (286)
T ss_pred HHHHHHHHHHHHhhcCCC---CCCC------------CC--CCCCccHHHHHHHHHHHHHcCcc-------ccchhhHHH
Confidence 46789999999999 763 5543 32 22446788999999999988641 012234678
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||.++|++||||....... .+...|-.++.+|..++... +..+++.++
T Consensus 103 ~~~~l~~~q~~dGgf~~~~~~~---------------------~d~~~ty~al~~l~ll~~~~--------~~~~~~~~~ 153 (286)
T cd02890 103 IYKFLSSLQNPDGSFRGDLGGE---------------------VDTRFVYCALSILSLLNILT--------DIDKEKLID 153 (286)
T ss_pred HHHHHHHhcCCCCCcccCCCCC---------------------chHHHHHHHHHHHHHhCCch--------hhhHHHHHH
Confidence 9999999999999996321110 12234566778888776421 256899999
Q ss_pred HHHhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC-ccCCCCCcCCCCccc
Q 026400 162 FTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG-GWGESYLSCPNKLHM 235 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG-gWg~~~~s~~~~~y~ 235 (239)
||++.|++||+|.+.- +.++...|++|+.+|...+.. +.+.+++.++||+++|+++| |+........+..|+
T Consensus 154 ~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~--~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt 227 (286)
T cd02890 154 YILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRL--DLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYS 227 (286)
T ss_pred HHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCC--cccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchh
Confidence 9999999999997553 345566789999999998875 35789999999999999998 887766555555554
No 22
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.73 E-value=6.5e-18 Score=125.59 Aligned_cols=112 Identities=23% Similarity=0.259 Sum_probs=77.9
Q ss_pred HHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhh
Q 026400 9 HDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY 88 (239)
Q Consensus 9 ~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~ 88 (239)
|+||++.|++| |+|. +. ...+++.+|+.+|.+|..++..+ ..+++. +++||++
T Consensus 1 v~~L~~~Q~~d---Ggw~------------~~---~~~~~~~~T~~al~aL~~~g~~~--------~~~~~~-~~~~L~~ 53 (113)
T PF13249_consen 1 VDWLLSRQNPD---GGWG------------GF---GGPSDVWDTAFALLALAALGEEP--------DRDRAA-AVEWLLS 53 (113)
T ss_dssp HHHHHHHB-TT---SSBB------------SS---TS-BEHHHHHHHHHHHHHHTSHH--------CHHHHH-HHHHHHH
T ss_pred CHhhHHHcCCC---CCCc------------CC---CCCCCHHHHHHHHHHHHHhCCcc--------cHHHHH-HHHHHHH
Confidence 79999999985 5544 42 23477899999999999987521 222222 4999999
Q ss_pred cccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhccc
Q 026400 89 IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK 168 (239)
Q Consensus 89 ~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~ 168 (239)
+|++||||....... ++++..|..++.+|..++...+ .+.++|+++||++.|+
T Consensus 54 ~q~~dGg~~~~~~~~--------------------~~~~~~t~~~l~~l~~~~~~~~-------~~~~~~a~~~l~~~Q~ 106 (113)
T PF13249_consen 54 QQNPDGGWGSNPDGG--------------------PPDVYTTYVALAALELLGRPDD-------EEAVRKAVDWLLSCQN 106 (113)
T ss_dssp HB-TTSGBBSSTTTT---------------------BSHHHHHHHHHHHHHHT-GGC-------HTTHCCHHHHHHHTB-
T ss_pred hCCCCCCccCCCCCC--------------------CccHHHHHHHHHHHHHcCCCcc-------cHHHHHHHHHHHHhcC
Confidence 999999998543211 1234568888888887764321 3679999999999999
Q ss_pred CCCCcc
Q 026400 169 LDGSWY 174 (239)
Q Consensus 169 ~dG~w~ 174 (239)
+||+|.
T Consensus 107 ~dGg~~ 112 (113)
T PF13249_consen 107 PDGGWG 112 (113)
T ss_dssp TTSSB-
T ss_pred CCCCCC
Confidence 999994
No 23
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.72 E-value=2.4e-16 Score=136.81 Aligned_cols=179 Identities=13% Similarity=0.071 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA 82 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~a 82 (239)
+.|+++++-|++.|+.| |+|+.+ +-. .+++=.||.++++|..++.. + .+++..|.++
T Consensus 52 ~~i~~g~~r~l~~q~~d---Gsf~~w---------~~~-----~~s~wlTA~v~~~l~~a~~~-----~-~v~~~~l~~a 108 (297)
T cd02896 52 KYIRQGYQRQLSYRKPD---GSYAAW---------KNR-----PSSTWLTAFVVKVFSLARKY-----I-PVDQNVICGS 108 (297)
T ss_pred HHHHHHHHHHHhccCCC---CCccCC---------CCC-----CcchhhHHHHHHHHHHHHHc-----C-CCCHHHHHHH
Confidence 45899999999999985 777643 111 12233699999999988652 2 4678999999
Q ss_pred hhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHH
Q 026400 83 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKF 162 (239)
Q Consensus 83 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~ 162 (239)
++||+++|++||+|....+-... ++.+..--.++.+..||.|+.+|...+...+.. ..++...|.||++|
T Consensus 109 ~~wL~~~Q~~dG~f~e~~~~~~~---------~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~-~~~~~~~i~rA~~y 178 (297)
T cd02896 109 VNWLISNQKPDGSFQEPSPVIHR---------EMTGGVEGSEGDVSLTAFVLIALQEARSICPPE-VQNLDQSIRKAISY 178 (297)
T ss_pred HHHHHhcCCCCCeeCCCCCccCh---------hccCCccccCCCccchHHHHHHHHhhhcccccc-chhhHHHHHHHHHH
Confidence 99999999999999742211000 000000001245678999999999987533221 12345789999999
Q ss_pred HHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCc
Q 026400 163 TEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS 228 (239)
Q Consensus 163 L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s 228 (239)
|.+.|.+ ...+|+++++..||..++.+ ...++.++|++.|+.||+|++.+.+
T Consensus 179 L~~~~~~---------~~~~Y~~Al~ayALal~~~~-----~~~~a~~~L~~~~~~d~~~~~~~~~ 230 (297)
T cd02896 179 LENQLPN---------LQRPYALAITAYALALADSP-----LSHAANRKLLSLAKRDGNGWYWWTI 230 (297)
T ss_pred HHHhccc---------CCChHHHHHHHHHHHHcCCh-----hhHHHHHHHHHHhhhCCCcceeccC
Confidence 9998864 24678999999999887643 6789999999999999999875543
No 24
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.68 E-value=1.6e-15 Score=132.44 Aligned_cols=166 Identities=19% Similarity=0.267 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcc--hHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDC--SSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~--Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
.++|.++||.+.|+. ++.|... .. ...-. +=.+|.+|..++.. .....++
T Consensus 9 ~~~kh~~yl~~~~~~---~~~~~~~------------~~----~~~r~~~~y~~l~~L~lL~~~---------~~~~~~~ 60 (316)
T PLN03201 9 VVDKHVRYIKSLEKK---KDSFESV------------VM----EHLRMNGAYWGLTALDLLGKL---------DDVDRDE 60 (316)
T ss_pred cHHHHHHHHHHhCCC---CCCcccc------------cc----ccchHHHHHHHHHHHHHhCCC---------ccccHHH
Confidence 368899999999985 4554311 00 11222 22255555554431 1233578
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
.++||+++|++||||+.++... ++...|..++.+|..++.. . + --.++.++
T Consensus 61 ~i~~l~~cq~~~GGF~~~~~~~---------------------~h~~~Ty~al~~L~ll~~~-~-----~--id~~~~~~ 111 (316)
T PLN03201 61 VVSWVMRCQHESGGFGGNTGHD---------------------PHILYTLSAVQILALFDRL-D-----L--LDADKVAS 111 (316)
T ss_pred HHHHHHHhcCCCCCcCCCCCCc---------------------ccHHHHHHHHHHHHHhhhh-h-----h--hhHHHHHH
Confidence 9999999999999998543211 1233577788888776431 1 1 12567999
Q ss_pred HHHhcccCCCCccCC-CCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCc
Q 026400 162 FTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS 228 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~-~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s 228 (239)
||.+.|++||+|.+. ++..++..|.+|+.+|.-.+.. +...++++++||+++|++||||+.....
T Consensus 112 ~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~scq~~dGGF~~~p~~ 177 (316)
T PLN03201 112 YVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIVSCKNFDGGFGCTPGG 177 (316)
T ss_pred HHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCCCCCcCCCCCC
Confidence 999999999999874 6666666677777666666543 3467899999999999999999986543
No 25
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.68 E-value=3.4e-15 Score=129.25 Aligned_cols=170 Identities=12% Similarity=0.012 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA 83 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av 83 (239)
.|+++++.|++.|+.| |+|+.+-. ....+++=.||.++.+|..+.. +..+++..|.+++
T Consensus 50 ~l~~g~~~~~~~q~~d---Gsf~~w~~------------~~~~~~~wlTa~v~~~L~~a~~------~~~v~~~~i~ra~ 108 (292)
T cd02897 50 FLRTGYQRQLTYKHSD---GSYSAFGE------------SDKSGSTWLTAFVLKSFAQARP------FIYIDENVLQQAL 108 (292)
T ss_pred HHHHHHHHHHhccCCC---CCeecccC------------CCCCcchhhHHHHHHHHHHHhc------cCCCCHHHHHHHH
Confidence 3666777777899985 77764311 0012345689999999999763 2345789999999
Q ss_pred hHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhc--cCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 84 NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII--EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 84 ~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+||+++|++||||..++.... ..|. .++.+..|+.|+.+|...+.. .+ .+.|+||++
T Consensus 109 ~wL~~~Q~~dG~f~~~~~~~~--------------~~~~~~~~~~~~~TA~vl~aL~~~g~~--~~-----~~~i~~a~~ 167 (292)
T cd02897 109 TWLSSHQKSNGCFREVGRVFH--------------KAMQGGVDDEVALTAYVLIALLEAGLP--SE-----RPVVEKALS 167 (292)
T ss_pred HHHHHhcCCCCCCCCCCcccC--------------hhhcCCCCCCcchHHHHHHHHHhcCCc--cc-----cHHHHHHHH
Confidence 999999999999985543110 0011 123456899999999998742 22 478999999
Q ss_pred HHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCC
Q 026400 162 FTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 226 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~ 226 (239)
||.+.+.+ ...+|.+++++.||..++.+ ....+-+.+.++...++.+|+|++.+
T Consensus 168 yL~~~~~~---------~~~~y~~al~a~AL~~~~~~--~~~~~~~~l~~~~~~~~~~~~W~~~~ 221 (292)
T cd02897 168 CLEAALDS---------ISDPYTLALAAYALTLAGSE--KRPEALKKLDELAISEDGTKHWSRPP 221 (292)
T ss_pred HHHHhccc---------CCCHHHHHHHHHHHHHcCCc--cHHHHHHHHHHHHhccCCCCCCCcCC
Confidence 99998764 35689999999999999843 23444455667777788889998753
No 26
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.68 E-value=9.7e-16 Score=132.17 Aligned_cols=175 Identities=18% Similarity=0.116 Sum_probs=125.7
Q ss_pred HHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhH
Q 026400 6 MKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANF 85 (239)
Q Consensus 6 ~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~ 85 (239)
++=++||.+.+... +..+..+ ..+..-.|=.+|.+|..++. ++....++++++|
T Consensus 2 ~~h~~~l~~~~~~~--~~~~~~~----------------~~~~~~~~y~~l~~l~ll~~--------~~~~~~~~~~i~~ 55 (286)
T cd02890 2 EKHIKYLQRCLKLL--PSSYTSL----------------DASRLWLLYWILSSLDLLGE--------DLDDENKDEIIDF 55 (286)
T ss_pred hHHHHHHHHHhhcC--ChhhhhH----------------HhhHHHHHHHHHHHHHHhCC--------CcchHHHHHHHHH
Confidence 34568888888863 2221111 11334456667777766653 3467889999999
Q ss_pred Hhhcc-cCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 86 MLYIQ-SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 86 Ll~~Q-~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
|+++| ++||||+.... +++++..|..++.+|..++.. ... ....+++++||.
T Consensus 56 l~~~q~~~~Ggf~~~~~---------------------~~~~~~~T~~al~~l~llg~~--~~~----~~~~~~~~~~l~ 108 (286)
T cd02890 56 IYSCQVNEDGGFGGGPG---------------------QDPHLASTYAAVLSLAILGDD--ALS----RIDREKIYKFLS 108 (286)
T ss_pred HHHhhcCCCCCCCCCCC---------------------CCccHHHHHHHHHHHHHcCcc--ccc----hhhHHHHHHHHH
Confidence 99999 99999975321 123445788999999998752 011 123578999999
Q ss_pred hcccCCCCccCC-CCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 165 DSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 165 ~~Q~~dG~w~g~-~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
+.|++||+|.+. ++..+++.|..++.+|...+... .+.+++.++||+++|++||||+..........|+
T Consensus 109 ~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t 178 (286)
T cd02890 109 SLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT--DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYT 178 (286)
T ss_pred HhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch--hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHh
Confidence 999999999765 36677888999999999888763 5789999999999999999999875544444444
No 27
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.67 E-value=1.9e-15 Score=130.50 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=119.4
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
.++.++||.++|... .|+|... + ..-++.-.|-.++.+|..++.. ...++..+++++
T Consensus 51 ~~~~i~fl~~~q~~~--~GgF~~~------------~--~~~~~~~~t~~a~~~L~ll~~~-------~~i~~~~~~~~~ 107 (287)
T cd02894 51 REEIIEFVKSCQDNE--DGGFGGS------------P--GHDPHILSTLSAIQILALYDLL-------NKIDENKEKIAK 107 (287)
T ss_pred HHHHHHHHHHHhcCC--CCCCCCC------------C--CCcchHHHHHHHHHHHHHhhhh-------hhccHHHHHHHH
Confidence 478899999999431 3665421 1 1113344566666666654321 112335788999
Q ss_pred HHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 85 FMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 85 ~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
||+++|++||||+.-.... +.+..|-.++.+|..++... ...++++++||+
T Consensus 108 ~i~~~q~~dGgf~~~~~~e---------------------~d~~~ty~a~~~l~ll~~~~--------~i~~~~~~~~l~ 158 (287)
T cd02894 108 FIKGLQNEDGSFSGDKWGE---------------------VDTRFSYCAVLCLTLLGKLD--------LIDVDKAVDYLL 158 (287)
T ss_pred HHHHHcCCCCCeecCCCCC---------------------chHHHHHHHHHHHHHhCCcc--------hhhHHHHHHHHH
Confidence 9999999999997421111 11223555666666665321 124799999999
Q ss_pred hcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 165 DSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 165 ~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
+.|++||||.++- +..++..|++|+.+|...|... ...++++++||+++|+++||+........+..|+
T Consensus 159 ~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~--~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ys 228 (287)
T cd02894 159 SCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLD--LIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYS 228 (287)
T ss_pred HcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCccc--ccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHh
Confidence 9999999997654 4456677899999999888652 4568999999999999999998766555555554
No 28
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.65 E-value=4.3e-15 Score=128.36 Aligned_cols=173 Identities=19% Similarity=0.238 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcc--hHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDC--SSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~--Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
.++++++||.+.|+.+ |+|+. +. +.++|. |=.++.+|..++.. ....+++
T Consensus 101 ~~~~~~~~i~~~q~~d---Ggf~~------------~~----~~e~d~~~ty~a~~~l~ll~~~---------~~i~~~~ 152 (287)
T cd02894 101 NKEKIAKFIKGLQNED---GSFSG------------DK----WGEVDTRFSYCAVLCLTLLGKL---------DLIDVDK 152 (287)
T ss_pred HHHHHHHHHHHHcCCC---CCeec------------CC----CCCchHHHHHHHHHHHHHhCCc---------chhhHHH
Confidence 4789999999999985 66552 11 112333 44444444443321 2234789
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||+++|++||||+.- ++. .+.+..|..++.+|..++.... .-+++.++
T Consensus 153 ~~~~l~~~q~~dGGF~~~-~~~--------------------es~~~~t~cavasL~llg~~~~--------~~~~~~~~ 203 (287)
T cd02894 153 AVDYLLSCYNFDGGFGCR-PGA--------------------ESHAGQIFCCVGALAILGSLDL--------IDRDRLGW 203 (287)
T ss_pred HHHHHHHcCCCCCCcCCC-CCC--------------------CCchhHHHHHHHHHHHcCcccc--------cCHHHHHH
Confidence 999999999999999732 211 0223457788889988875422 23788999
Q ss_pred HHHhcccCCCCccCCCC-cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhcc-CCCCccCCCCCcCCCCccc
Q 026400 162 FTEDSQKLDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ-CDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q-~~dGgWg~~~~s~~~~~y~ 235 (239)
||.+.|.++|+|.++-+ ...++-|.+++.+|...+... ....++..+||+++| .++|||........+.-|+
T Consensus 204 ~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~--~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht 277 (287)
T cd02894 204 WLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLH--WINKNKLKNFILACQDEEDGGFADRPGNMVDVFHT 277 (287)
T ss_pred HHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhcccc--ccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHH
Confidence 99999999999976643 345666788888888777653 244889999999999 4799998876655555544
No 29
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.65 E-value=5.7e-15 Score=128.17 Aligned_cols=167 Identities=15% Similarity=0.144 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCC---CCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHH
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHIS---KGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERF 79 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~---~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i 79 (239)
+.|.++++||+++|+.+ |+|....+... .||+.. ..++++.||.++.+|++.+...+.. .......|
T Consensus 103 ~~l~~a~~wL~~~Q~~d---G~f~e~~~~~~~~m~gg~~~-----~~~~~~lTA~vl~aL~~~~~~~~~~--~~~~~~~i 172 (297)
T cd02896 103 NVICGSVNWLISNQKPD---GSFQEPSPVIHREMTGGVEG-----SEGDVSLTAFVLIALQEARSICPPE--VQNLDQSI 172 (297)
T ss_pred HHHHHHHHHHHhcCCCC---CeeCCCCCccChhccCCccc-----cCCCccchHHHHHHHHhhhcccccc--chhhHHHH
Confidence 57899999999999985 88886433222 233321 1256889999999999986532210 01235689
Q ss_pred HhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHH
Q 026400 80 YDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNG 159 (239)
Q Consensus 80 ~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra 159 (239)
.+|++||.++|.+ .. ++..++.+..||+.++. +...++
T Consensus 173 ~rA~~yL~~~~~~--------~~-----------------------~~Y~~Al~ayALal~~~-----------~~~~~a 210 (297)
T cd02896 173 RKAISYLENQLPN--------LQ-----------------------RPYALAITAYALALADS-----------PLSHAA 210 (297)
T ss_pred HHHHHHHHHhccc--------CC-----------------------ChHHHHHHHHHHHHcCC-----------hhhHHH
Confidence 9999999998863 00 12346667777777652 356889
Q ss_pred HHHHHhcccCCCCccCCC----------Ccc--hhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCC
Q 026400 160 VKFTEDSQKLDGSWYGTW----------GVC--FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 160 ~~~L~~~Q~~dG~w~g~~----------g~~--~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
.++|.+.|+.||+|...| +.. .+-.|++||+++...+. .+.+.++++||.++||.+|||...
T Consensus 211 ~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~----~~~a~~iv~WL~~qr~~~Ggf~sT 284 (297)
T cd02896 211 NRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD----IEYANPIARWLTEQRNYGGGFGST 284 (297)
T ss_pred HHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC----chhHHHHHHHHHhcCCCCCCeehH
Confidence 999999999999985321 112 46789999999998873 246888999999999999999864
No 30
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.64 E-value=1.1e-16 Score=118.40 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=41.2
Q ss_pred HHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 026400 79 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 158 (239)
Q Consensus 79 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~r 158 (239)
|+++++||++.|++||||. +... .....|+.++.+|..++. +. +.++|+|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~-~~~~----------------------~~~~~t~~~~~al~~~~~--~~-----~~~ai~k 50 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWG-YNWG----------------------SDVFVTAALILALAAAGD--AA-----VDEAIKK 50 (109)
T ss_dssp ---------------------------------------------------------------T--S------SSBSSHH
T ss_pred Ccccccccccccccccccc-cccc----------------------ccccccccccccccccCC--CC-----cHHHHHH
Confidence 5789999999999999996 2211 123457778888887753 22 2478999
Q ss_pred HHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 159 GVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 159 a~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
|++||+++|++||+|... +..+.+.|..++.+|...+... .++.++|+++||+++|..
T Consensus 51 a~~~l~~~Q~~dG~w~~~-~~~~~~~t~~~~~~l~~~~~~~-~~~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 51 AIDWLLSHQNPDGGWGYS-GGEYVSMTAAAIAALALAGVYP-DDEAVERGLEWILSHQLD 108 (109)
T ss_dssp HHHHHHH---TTS--S-T-S--HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHhcCCCCCCCCc-CCCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCC
Confidence 999999999999999644 4444556666666665555544 589999999999999753
No 31
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.61 E-value=8e-15 Score=124.71 Aligned_cols=161 Identities=10% Similarity=0.111 Sum_probs=112.4
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccC
Q 026400 45 GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEH 124 (239)
Q Consensus 45 ~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 124 (239)
.-.|.+-|...|.-|+.+-+. .+.+.+.+++.+|++|||++|+++|||+.|.+.+. .++..|+.-+
T Consensus 39 ~TiDN~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~ITfND--------- 104 (290)
T TIGR02474 39 GTIDNGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAITYND--------- 104 (290)
T ss_pred ccccCccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-CcccccccCc---------
Confidence 335678888888888886543 23467899999999999999999999998887654 3444443111
Q ss_pred CCccchHHHHHHHHHhhhh------CCCCchhhhHHHHHHHHHHHHhcccCCCCccCCCCcchh----------------
Q 026400 125 DYVECTASALKAMTLFQKL------YPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFI---------------- 182 (239)
Q Consensus 125 ~~~~~Ta~~l~aL~~~~~~------~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~~~~---------------- 182 (239)
+...+||.+|..+... .++....++..+++||++||++.|.++|+|.+.|+.+|.
T Consensus 105 ---~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pS 181 (290)
T TIGR02474 105 ---NAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPS 181 (290)
T ss_pred ---HHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcc
Confidence 2355788888665331 112233677899999999999999999999999975431
Q ss_pred ---hHHHHHHHHHHHcCcc-CCCHHHHHHHHHHHHhccCCCCcc
Q 026400 183 ---YSTWWAISGLVAAEKT-YSNCLAIRKATDFLLNIQCDDGGW 222 (239)
Q Consensus 183 ---~~T~~al~aL~~~g~~-~~~~~~i~~a~~~L~~~Q~~dGgW 222 (239)
..|+-++..|+..-.+ .....+|+.|++||.++.-++=-|
T Consensus 182 ls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g~~~ 225 (290)
T TIGR02474 182 LSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRGYAY 225 (290)
T ss_pred cccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCCcee
Confidence 1244556666654322 112468899999999998765444
No 32
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.57 E-value=3.7e-14 Score=123.90 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=117.4
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
.++.++||.++|+++ |+|+... . ..++.-.|-.++.+|..++. ...-..++.++
T Consensus 58 ~~~~i~~l~~cq~~~---GGF~~~~-------------~-~~~h~~~Ty~al~~L~ll~~---------~~~id~~~~~~ 111 (316)
T PLN03201 58 RDEVVSWVMRCQHES---GGFGGNT-------------G-HDPHILYTLSAVQILALFDR---------LDLLDADKVAS 111 (316)
T ss_pred HHHHHHHHHHhcCCC---CCcCCCC-------------C-CcccHHHHHHHHHHHHHhhh---------hhhhhHHHHHH
Confidence 478999999999974 6655321 1 12456667777777776632 12233557899
Q ss_pred HHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 85 FMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 85 ~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
||.++|++||||..-.... .+...|-.++.+|...+... ...++++++||+
T Consensus 112 ~l~s~Q~~dGgF~~~~~ge---------------------~D~r~ty~a~a~l~LL~~~~--------~i~~~~~~~~i~ 162 (316)
T PLN03201 112 YVAGLQNEDGSFSGDEWGE---------------------IDTRFSYCALCCLSLLKRLD--------KINVEKAVDYIV 162 (316)
T ss_pred HHHHhcCCCCCccCCCCCC---------------------ccHHHHHHHHHHHHHhCccc--------hhHHHHHHHHHH
Confidence 9999999999997311110 01112444555566554321 124789999999
Q ss_pred hcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 165 DSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 165 ~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
+.|++||+|.+.- +..+.-.|++++.+|.-.|... ....++.++||+++|..+||+...+....+.-|+
T Consensus 163 scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~--~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys 232 (316)
T PLN03201 163 SCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLH--HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYS 232 (316)
T ss_pred HhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccc--cCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHH
Confidence 9999999997653 4444555888888888777432 1234677899999999999999888776766665
No 33
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.57 E-value=1.3e-13 Score=119.31 Aligned_cols=166 Identities=16% Similarity=0.073 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCC-CCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDK-DHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~-~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
..|.+|++||+++|+.+ |+|..+.+.. .... ....+.++.||.++.||++.+. +.+.+.|.+
T Consensus 102 ~~i~ra~~wL~~~Q~~d---G~f~~~~~~~------~~~~~~~~~~~~~~TA~vl~aL~~~g~--------~~~~~~i~~ 164 (292)
T cd02897 102 NVLQQALTWLSSHQKSN---GCFREVGRVF------HKAMQGGVDDEVALTAYVLIALLEAGL--------PSERPVVEK 164 (292)
T ss_pred HHHHHHHHHHHHhcCCC---CCCCCCCccc------ChhhcCCCCCCcchHHHHHHHHHhcCC--------ccccHHHHH
Confidence 57999999999999985 8877542211 1100 0011346899999999998753 225688999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||.+.+.+ . .++..++.+..+|+.++. +. ...+-+.+.
T Consensus 165 a~~yL~~~~~~--------~-----------------------~~~y~~al~a~AL~~~~~--~~------~~~~~~~l~ 205 (292)
T cd02897 165 ALSCLEAALDS--------I-----------------------SDPYTLALAAYALTLAGS--EK------RPEALKKLD 205 (292)
T ss_pred HHHHHHHhccc--------C-----------------------CCHHHHHHHHHHHHHcCC--cc------HHHHHHHHH
Confidence 99999998764 0 012357788888888762 21 123344466
Q ss_pred HHHhcccCCCCccCC-----------CC-cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCC
Q 026400 162 FTEDSQKLDGSWYGT-----------WG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 226 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~-----------~g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~ 226 (239)
++...++.+|.|... ++ ...+-.|+++|++|...+.+ ..+.+.++++||.++|+++|||+...
T Consensus 206 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~--~~~~~~~~v~WL~~~q~~~Ggf~sTQ 280 (292)
T cd02897 206 ELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGE--DLAEALPIVKWLAKQRNSLGGFSSTQ 280 (292)
T ss_pred HHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCc--cHhHHHHHHHHHHHcCCCCCCcccHH
Confidence 666677777888421 11 23466799999999998753 35788899999999999999998754
No 34
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.54 E-value=3e-13 Score=117.45 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA 83 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av 83 (239)
...+.++||.++|+++ |+|... ....++.-.|=.++.+|..++..+ ........+.+
T Consensus 48 ~~~~~i~~i~~~q~~~---GgF~~~--------------~~~~~h~~~Ty~A~~~L~ll~~~~------~~~~id~~~~~ 104 (299)
T cd02893 48 YADDVISFLRRCQNPS---GGFGGG--------------PGQLPHLATTYAAVNALAIIGTEE------AYDVIDREALY 104 (299)
T ss_pred HHHHHHHHHHHhcCCC---CCCCCC--------------CCCCccHHHHHHHHHHHHHhCCch------hhhHhhHHHHH
Confidence 3578899999999974 665421 112355556666666666664310 01122234588
Q ss_pred hHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHH
Q 026400 84 NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFT 163 (239)
Q Consensus 84 ~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L 163 (239)
+||+++|++||||..-..... +...|-.++..+..++.. + ...++++++||
T Consensus 105 ~~l~~~q~~dGgf~~~~~~e~---------------------D~r~tycava~~~lL~~~-~-------~~~~~~~~~~l 155 (299)
T cd02893 105 KFLLSLKQPDGSFRMHVGGEV---------------------DVRGTYCAISVASLLNIL-T-------DELFEGVAEYI 155 (299)
T ss_pred HHHHHhcCCCCCeeCCCCCCc---------------------hHhHHHHHHHHHHHhCCC-c-------hhhHHHHHHHH
Confidence 999999999999974322111 111233344444544432 1 24578999999
Q ss_pred HhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC-CCccCCCCCcCCCCccc
Q 026400 164 EDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD-DGGWGESYLSCPNKLHM 235 (239)
Q Consensus 164 ~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~-dGgWg~~~~s~~~~~y~ 235 (239)
++.|++||||.+.- ...+.--|.+++.+|.-.+.. +...+++.++||+++|.+ +||+...+.-..+.-|+
T Consensus 156 ~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~--~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys 227 (299)
T cd02893 156 LSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKP--DKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYS 227 (299)
T ss_pred HHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCc--cccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHH
Confidence 99999999997653 334444578888888887754 235688999999999998 99998777555555554
No 35
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.51 E-value=8.4e-15 Score=108.31 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=39.7
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
|+++++||++.|++| |+| .+... .+...|+.++.+|..++. +...++|.++++
T Consensus 1 i~~~~~~l~~~Q~~d---G~W------------~~~~~----~~~~~t~~~~~al~~~~~--------~~~~~ai~ka~~ 53 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPD---GSW------------GYNWG----SDVFVTAALILALAAAGD--------AAVDEAIKKAID 53 (109)
T ss_dssp -----------------------------------------------------------T--------S-SSBSSHHHHH
T ss_pred Ccccccccccccccc---ccc------------ccccc----ccccccccccccccccCC--------CCcHHHHHHHHH
Confidence 678999999999985 555 33211 356788888888888753 246788999999
Q ss_pred HHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 85 FMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 85 ~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
||+++|++||||+.... .+..+|+.++.+|...+. .+ .++.++|+++||+
T Consensus 54 ~l~~~Q~~dG~w~~~~~-----------------------~~~~~t~~~~~~l~~~~~-~~------~~~~~~r~~~wi~ 103 (109)
T PF13243_consen 54 WLLSHQNPDGGWGYSGG-----------------------EYVSMTAAAIAALALAGV-YP------DDEAVERGLEWIL 103 (109)
T ss_dssp HHHH---TTS--S-TS-------------------------HHHHHHHHHHHHHHHHT-T--------HHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCcCC-----------------------CCHHHHHHHHHHHHHhCC-CC------CCHHHHHHHHHHH
Confidence 99999999999984411 012346666666655432 22 1578999999999
Q ss_pred hccc
Q 026400 165 DSQK 168 (239)
Q Consensus 165 ~~Q~ 168 (239)
++|.
T Consensus 104 ~~~~ 107 (109)
T PF13243_consen 104 SHQL 107 (109)
T ss_dssp HH--
T ss_pred HccC
Confidence 9975
No 36
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.50 E-value=8.5e-13 Score=114.97 Aligned_cols=191 Identities=14% Similarity=0.045 Sum_probs=118.5
Q ss_pred HHHHHHHHhccCCC-CCCCCcchhcCCCC-CCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh
Q 026400 6 MKAHDFLKNSQVTD-NPQGDFRSMFRHIS-KGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA 83 (239)
Q Consensus 6 ~~a~~~l~~~Q~~~-~~~g~~~~~~~~~~-~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av 83 (239)
++.++||.++|+.+ ++.|+|+...-+.. .++. ....++.-.|=.++.+|..++. +.......+.+
T Consensus 52 ~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~-----~~~~~~l~~ty~Al~~L~lL~~--------~~~~idr~~i~ 118 (307)
T cd02895 52 DDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTAS-----KYDTGNLAMTYFALLSLLILGD--------DLSRVDRKAIL 118 (307)
T ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCccccccc-----cCCcccHHHHHHHHHHHHHhCC--------chhhhhHHHHH
Confidence 57799999999321 11366653211000 0000 1112444456556656655542 11112346678
Q ss_pred hHHhhcccCCcceeecc---CCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHH
Q 026400 84 NFMLYIQSKTGGITGWE---PAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGV 160 (239)
Q Consensus 84 ~~Ll~~Q~~dGgw~~~~---~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~ 160 (239)
+||+++|++||||+... ... +....|-.++..|..++...+ + ..-.++.+
T Consensus 119 ~~l~~~q~~dGgF~~~~~~~~~e---------------------~d~r~ty~Av~~l~lL~~~~~--~----~~d~~~li 171 (307)
T cd02895 119 NFLSKLQLPDGSFGSVLDSEGGE---------------------NDMRFCYCAVAICYMLDDWSE--E----DIDKEKLI 171 (307)
T ss_pred HHHHHhCCCCCCccCCcCCcCCC---------------------ccHHHHHHHHHHHHHhCCCcc--c----cccHHHHH
Confidence 99999999999997432 111 112235556666776654321 0 02368899
Q ss_pred HHHHhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccC-CCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCcccc
Q 026400 161 KFTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTY-SNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN 236 (239)
Q Consensus 161 ~~L~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~~ 236 (239)
+||.+.|++||+|...- +..+.-.|.+|+.+|...+... .....+++.++||+++|+.+|||+.......+..|+-
T Consensus 172 ~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysf 249 (307)
T cd02895 172 DYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSF 249 (307)
T ss_pred HHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhh
Confidence 99999999999996543 4444556788888888776531 0146788999999999999999998877666666653
No 37
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.48 E-value=1e-12 Score=114.43 Aligned_cols=182 Identities=20% Similarity=0.236 Sum_probs=117.3
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
.++.++||.++|+.+ |+|+... . + ..+-++.--|=.++.+|..++..++ .....++.++
T Consensus 114 r~~i~~~l~~~q~~d---GgF~~~~--------~-~--~~~e~d~r~ty~Av~~l~lL~~~~~-------~~~d~~~li~ 172 (307)
T cd02895 114 RKAILNFLSKLQLPD---GSFGSVL--------D-S--EGGENDMRFCYCAVAICYMLDDWSE-------EDIDKEKLID 172 (307)
T ss_pred HHHHHHHHHHhCCCC---CCccCCc--------C-C--cCCCccHHHHHHHHHHHHHhCCCcc-------ccccHHHHHH
Confidence 367899999999985 7765321 0 0 0111233334334444444432110 1123678899
Q ss_pred HHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 85 FMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 85 ~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
||+++|+.||||+..... | +....|-.++.+|..++.... .. ...+++.++||+
T Consensus 173 ~l~s~Q~~dGGF~~~~~~------------E---------sh~g~Tyca~asL~lL~~~~~-~~----~~~~~~l~~wL~ 226 (307)
T cd02895 173 YIKSSQSYDGGFGQGPGL------------E---------SHGGSTFCAIASLSLLGKLEE-LS----EKFLERLKRWLV 226 (307)
T ss_pred HHHHccCCCCCccCCCCC------------C---------ccccHHHHHHHHHHHcCCccc-cc----cccHHHHHHHHH
Confidence 999999999999732211 1 123357778888888765320 00 134688999999
Q ss_pred hcccCCCCccCCCC-cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccC-CCCccCCCCCcCCCCccc
Q 026400 165 DSQKLDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 165 ~~Q~~dG~w~g~~g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~-~dGgWg~~~~s~~~~~y~ 235 (239)
+.|.++|||.++-+ ...++-|.+++.+|.-.+.. ....+++..+||+++|+ .+||+...+....+.-|+
T Consensus 227 ~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~--~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht 297 (307)
T cd02895 227 HRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAF--QLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHS 297 (307)
T ss_pred HhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcc--cccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHH
Confidence 99999999977642 33455577787777777654 24567899999999886 599999988776666554
No 38
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.46 E-value=2e-12 Score=116.37 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=115.8
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
-++.++||.++|+++ |+|+.. +| ..++.-.|=.++.+|..++... ....-...+.++
T Consensus 94 ~~~ii~~l~~cQ~~d---GGFgg~-----pg---------~~~hl~~TY~Av~~L~iLg~~~------~l~~Idr~~l~~ 150 (439)
T PLN02710 94 ENDTIDFLSRCQDPN---GGYGGG-----PG---------QLPHLATTYAAVNTLVTIGGER------ALSSINREKLYT 150 (439)
T ss_pred HHHHHHHHHHhcCCC---cCCCCC-----CC---------CCccHHHHHHHHHHHHHcCCch------hhcccCHHHHHH
Confidence 367899999999974 665421 11 1244555666666666664310 011112356789
Q ss_pred HHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 85 FMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 85 ~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
||+++|++||||....... ..+..|-.++..+..++... ..-+++.++||+
T Consensus 151 fl~s~q~~dGgF~~~~~gE---------------------~D~R~tYcAlail~LL~~l~--------~~~~e~~~~~I~ 201 (439)
T PLN02710 151 FLLRMKDPSGGFRMHDGGE---------------------MDVRACYTAISVASLLNILD--------DELVKGVGDYIL 201 (439)
T ss_pred HHHHcCCCCCCcccCCCCC---------------------CCcCCcHHHHHHHHHhCcCc--------hhhHHHHHHHHH
Confidence 9999999999997422211 11222333444455554321 135789999999
Q ss_pred hcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 165 DSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 165 ~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
+.|+.||||.+.- ...+.--|.+++.+|.-.+.. +...+++.++||+++|+.+|||.....-..+..|.
T Consensus 202 scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l--~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYS 271 (439)
T PLN02710 202 SCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEV--DRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYS 271 (439)
T ss_pred HhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCc--cccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhh
Confidence 9999999997663 344555577888888877754 23457899999999999999999877666666664
No 39
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.46 E-value=1.4e-13 Score=124.99 Aligned_cols=183 Identities=21% Similarity=0.303 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCccc----ccC--CCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCCh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWT----FSD--KDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEP 76 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~----~~~--~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~ 76 (239)
+.++++++|+..+|+. .|+|..+. .+..++|. ... .....+-+|||+.++.+|.++..--. +. +.
T Consensus 281 ~~~~~~l~~V~~~q~~---~g~~a~~e-~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~---~~--~~ 351 (517)
T COG1657 281 PNFELGLDWVLYMQNK---LGGLAVYE-DRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLE---AY--DG 351 (517)
T ss_pred hhHHhhhhHhhhcccc---cCceeeec-cccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccc---cc--cC
Confidence 4677899999999997 58888764 44455552 111 11234558999999999988754211 01 24
Q ss_pred HHHHhhhhHHhhcccCCccee-eccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF 155 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~ 155 (239)
..|+++++||++.|+++|.|- .|..+ +.+.|+.++.+|...+..+ .....
T Consensus 352 ~~i~~a~e~LL~~Q~~~GsW~g~w~v~-----------------------~iY~~s~a~~~l~~~g~~~------~~~~~ 402 (517)
T COG1657 352 QPIERALEWLLSDQEPDGSWYGRWGVC-----------------------YIYGTSGALSALALVGETD------ENEVL 402 (517)
T ss_pred CcccHHHhhhhhhccccCceeeEEEEE-----------------------EEEehhhhhhhhhccCccc------cchHH
Confidence 669999999999999999994 33321 2456778888888876532 12468
Q ss_pred HHHHHHHHHhcccCCCCccCCC-----------CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCC
Q 026400 156 ITNGVKFTEDSQKLDGSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 156 i~ra~~~L~~~Q~~dG~w~g~~-----------g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
+++++.||...|.++|+|...+ +.+....|.+|+.++..+..+ +.+.+++++++|.+.|.++|.|++
T Consensus 403 v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~--~~~~i~~~~~~~~~~~~~~g~~~~ 480 (517)
T COG1657 403 VRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEP--NQEAIKPGINLLVSDQEPDGSWRE 480 (517)
T ss_pred HHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhccc--chhhhcccccccccCcCCCCcccc
Confidence 9999999999999999997654 123455789999999888877 567799999999999999999987
Q ss_pred C
Q 026400 225 S 225 (239)
Q Consensus 225 ~ 225 (239)
.
T Consensus 481 ~ 481 (517)
T COG1657 481 A 481 (517)
T ss_pred c
Confidence 4
No 40
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.43 E-value=2.4e-12 Score=111.74 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=104.4
Q ss_pred HHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcc----hHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 6 MKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDC----SSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 6 ~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~----Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
++.++||.++|+.+ |+|+. .. ..++|. +|.++..|+.. .....+++
T Consensus 101 ~~~~~~l~~~q~~d---Ggf~~------------~~----~~e~D~r~tycava~~~lL~~-----------~~~~~~~~ 150 (299)
T cd02893 101 EALYKFLLSLKQPD---GSFRM------------HV----GGEVDVRGTYCAISVASLLNI-----------LTDELFEG 150 (299)
T ss_pred HHHHHHHHHhcCCC---CCeeC------------CC----CCCchHhHHHHHHHHHHHhCC-----------CchhhHHH
Confidence 56899999999985 66552 21 112333 35555555432 12345789
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
.++||+++|+.||||+..... .+....|..++.+|..++.... .-+++.++
T Consensus 151 ~~~~l~~cQ~~dGGF~~~p~~---------------------e~h~~yTfcavasL~llg~~~~--------~d~~~l~~ 201 (299)
T cd02893 151 VAEYILSCQTYEGGFGGVPGN---------------------EAHGGYTFCALAALAILGKPDK--------LDLESLLR 201 (299)
T ss_pred HHHHHHHcCCCCCCcCCCCCC---------------------CCCccHHHHHHHHHHHcCCccc--------cCHHHHHH
Confidence 999999999999999742211 1233457788889998875321 13678999
Q ss_pred HHHhcccC-CCCccCCCC-cchhhHHHHHHHHHHHcCccC-----------CCHHHHHHHHHHHHhc-cCCCCccCCCCC
Q 026400 162 FTEDSQKL-DGSWYGTWG-VCFIYSTWWAISGLVAAEKTY-----------SNCLAIRKATDFLLNI-QCDDGGWGESYL 227 (239)
Q Consensus 162 ~L~~~Q~~-dG~w~g~~g-~~~~~~T~~al~aL~~~g~~~-----------~~~~~i~~a~~~L~~~-Q~~dGgWg~~~~ 227 (239)
||++.|.+ +|+|.|+-+ ...++=|.+++.+|...+... ......++..+||+++ |+.+|||.....
T Consensus 202 wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~ 281 (299)
T cd02893 202 WLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPG 281 (299)
T ss_pred HHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCC
Confidence 99999988 899977642 112222344444433332210 0124567899999954 567899987655
Q ss_pred cCCC
Q 026400 228 SCPN 231 (239)
Q Consensus 228 s~~~ 231 (239)
...+
T Consensus 282 ~~~D 285 (299)
T cd02893 282 KPRD 285 (299)
T ss_pred CCCC
Confidence 4444
No 41
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.6e-12 Score=106.27 Aligned_cols=118 Identities=25% Similarity=0.374 Sum_probs=86.6
Q ss_pred HHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 026400 79 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 158 (239)
Q Consensus 79 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~r 158 (239)
-++.|.|+++||+.+|||+.++.. .++ .-.|-.+++.|+.+.... .. -.++
T Consensus 68 ~eeiv~~v~~C~~~~GGfa~~~Gh-d~h--------------------ll~TlsAvQiL~~ydsi~-~~-------d~d~ 118 (329)
T KOG0366|consen 68 REEIVSFVLSCQHEDGGFAGCPGH-DPH--------------------LLYTLSAVQILALYDSIN-VL-------DRDK 118 (329)
T ss_pred HHHHHHHHHheecCCCCcCCCCCC-ChH--------------------HHHHHHHHHHHHHHcccc-cc-------cHHH
Confidence 456789999999999999865532 222 223666778888775431 11 1356
Q ss_pred HHHHHHhcccCCCCccCC-CCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCC
Q 026400 159 GVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL 227 (239)
Q Consensus 159 a~~~L~~~Q~~dG~w~g~-~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~ 227 (239)
-+.|+...|++||+|.|. ||.-.+.-+..|+..|+-.|.- +...+++||+|+++|-|-|||||..+.
T Consensus 119 v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~pG 186 (329)
T KOG0366|consen 119 VASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKL--DTINVEKAVDFVLSCYNFDGGFGCRPG 186 (329)
T ss_pred HHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCCCC
Confidence 689999999999999876 7765555555666666666654 357899999999999999999998653
No 42
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.36 E-value=9.1e-12 Score=106.83 Aligned_cols=116 Identities=21% Similarity=0.168 Sum_probs=91.0
Q ss_pred ChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHH
Q 026400 75 EPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNN 154 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~ 154 (239)
..+.|.+++++|+++|++||||+.|.... .+++..|+.++.+|..+++..+ . ..+
T Consensus 47 ~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~--------------------~~~~~~Ta~~~~~L~~a~~~~~-v----~~~ 101 (282)
T cd02891 47 ALEYIRKGYQRLLTYQRSDGSFSAWGNSD--------------------SGSTWLTAYVVKFLSQARKYID-V----DEN 101 (282)
T ss_pred HHHHHHHHHHHHHhhcCCCCCccccCCCC--------------------CCchHHHHHHHHHHHHHHHcCC-C----CHH
Confidence 36779999999999999999999886541 1234569999999998765331 1 147
Q ss_pred HHHHHHHHHHhcccCCCCccCCCCc----------chhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccC
Q 026400 155 FITNGVKFTEDSQKLDGSWYGTWGV----------CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC 217 (239)
Q Consensus 155 ~i~ra~~~L~~~Q~~dG~w~g~~g~----------~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~ 217 (239)
.++|+++||.+.|.+||+|...+.. .....|++++.+|...|... ...+.++++||.++..
T Consensus 102 ~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~--~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 102 VLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKAC--DASIEKALAYLETQLD 172 (282)
T ss_pred HHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccc--hHHHHHHHHHHHHhcc
Confidence 8999999999999999999654421 22357999999999988752 5789999999998775
No 43
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.31 E-value=1.4e-10 Score=99.52 Aligned_cols=179 Identities=16% Similarity=0.156 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
.+.|.+++++|.+.|+.| |+|+-+ + .. ..+++-.|+.++.+|..+... + .++.+.|.+
T Consensus 48 ~~~i~~~~~~l~~~Q~~d---Ggf~~w---------~---~~-~~~~~~~Ta~~~~~L~~a~~~-----~-~v~~~~i~r 105 (282)
T cd02891 48 LEYIRKGYQRLLTYQRSD---GSFSAW---------G---NS-DSGSTWLTAYVVKFLSQARKY-----I-DVDENVLAR 105 (282)
T ss_pred HHHHHHHHHHHHhhcCCC---CCcccc---------C---CC-CCCchHHHHHHHHHHHHHHHc-----C-CCCHHHHHH
Confidence 357899999999999985 666522 1 11 135667899999999988652 2 457889999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||++.|++||+|........... + ..+.+....|+.++.+|...+... ...+.++++
T Consensus 106 a~~~L~~~q~~~g~~~~~~~~~~~~~---------~---~~~~~~~~~tA~al~~L~~~g~~~--------~~~~~~a~~ 165 (282)
T cd02891 106 ALGWLVPQQKEDGSFRELGPVIHREM---------K---GGVDDSVSLTAYVLIALAEAGKAC--------DASIEKALA 165 (282)
T ss_pred HHHHHHhccCCCCCcCCCCCccCHhh---------c---CCcCCCcchHHHHHHHHHHhcccc--------hHHHHHHHH
Confidence 99999999999999974432110000 0 001123345777777777665311 123444444
Q ss_pred HHHhccc------------------------------------CCCC-------ccCCCC-cchhhHHHHHHHHHHHcCc
Q 026400 162 FTEDSQK------------------------------------LDGS-------WYGTWG-VCFIYSTWWAISGLVAAEK 197 (239)
Q Consensus 162 ~L~~~Q~------------------------------------~dG~-------w~g~~g-~~~~~~T~~al~aL~~~g~ 197 (239)
||.+... ..+. |...++ ......|++++.+....+
T Consensus 166 ~L~~~~~~~~~~~~~a~la~al~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~- 244 (282)
T cd02891 166 YLETQLDGLLDPYALAILAYALALAGDSTRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLG- 244 (282)
T ss_pred HHHHhcccCCChHHHHHHHHHHHHcCccHHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcC-
Confidence 4444332 1121 111112 123445666666655433
Q ss_pred cCCCHHHHHHHHHHHHhccCCCCccCCCC
Q 026400 198 TYSNCLAIRKATDFLLNIQCDDGGWGESY 226 (239)
Q Consensus 198 ~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~ 226 (239)
+.+...+.++||.+.++.+|+|....
T Consensus 245 ---~~~~~~~~~~~L~~~~~~~~~~~sTq 270 (282)
T cd02891 245 ---DLEEAGPIAKWLAQQRNSGGGFLSTQ 270 (282)
T ss_pred ---ChhhHHHHHHHHHHcCCCCCCcccHH
Confidence 23567789999999888999998654
No 44
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.26 E-value=6.7e-11 Score=106.64 Aligned_cols=128 Identities=16% Similarity=0.113 Sum_probs=84.8
Q ss_pred CChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhH
Q 026400 74 MEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 74 ~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
.......+.++||.++|++||||+...... +....|-.++.+|..++... ... .+
T Consensus 89 l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~---------------------~hl~~TY~Av~~L~iLg~~~-~l~--~I- 143 (439)
T PLN02710 89 LDDELENDTIDFLSRCQDPNGGYGGGPGQL---------------------PHLATTYAAVNTLVTIGGER-ALS--SI- 143 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCCcCCCCCCCCC---------------------ccHHHHHHHHHHHHHcCCch-hhc--cc-
Confidence 344556778999999999999997432211 12234666778888776420 010 01
Q ss_pred HHHHHHHHHHHhcccCCCCccCC-CCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcC
Q 026400 154 NFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSC 229 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~g~-~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~ 229 (239)
-.++.++||++.|++||+|.+. ++...+-.|..|+..+.-.+.- ....+++.++||++||+.||||+.....-
T Consensus 144 -dr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l--~~~~~e~~~~~I~scQ~~dGGF~g~P~~E 217 (439)
T PLN02710 144 -NREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL--DDELVKGVGDYILSCQTYEGGIGGEPGAE 217 (439)
T ss_pred -CHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC--chhhHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 1467899999999999999654 2443333444455444444432 35678999999999999999999765433
No 45
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.23 E-value=3e-10 Score=96.05 Aligned_cols=179 Identities=16% Similarity=0.192 Sum_probs=113.3
Q ss_pred HHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHh
Q 026400 8 AHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 87 (239)
Q Consensus 8 a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll 87 (239)
+.+=+++-|+.| |+|+.| . .+..+++=.||.+++.|..+.+. ..++...|.++++||+
T Consensus 2 GYqr~L~y~~~D---Gsfs~f-~------------~~~~~s~WLTAfv~k~f~~a~~~------i~vd~~~i~~a~~wL~ 59 (246)
T PF07678_consen 2 GYQRQLSYRRSD---GSFSAF-S------------SDSPSSTWLTAFVVKVFSQAKKY------IFVDENVICRAVKWLI 59 (246)
T ss_dssp HHHHHHTTB-TT---SSBBSS-T------------TTSSBBHHHHHHHHHHHHHHTTT------S-CEHHHHHHHHHHHH
T ss_pred chHHHhcCCCCC---CCeecc-c------------cCCcccHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHH
Confidence 445566677664 777754 1 11224456899999999988753 3568899999999999
Q ss_pred hcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcc
Q 026400 88 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ 167 (239)
Q Consensus 88 ~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q 167 (239)
+.|++||.|....+-... .+. +. + ...+..||.|+.+|...+...+. ....+..+++||++||++..
T Consensus 60 ~~Q~~dG~F~e~~~~~~~----~~~-----g~--~-~~~~~lTA~VliAL~e~~~~~~~-~~~~~~~~i~kA~~~L~~~~ 126 (246)
T PF07678_consen 60 SQQQPDGSFEEDGPVIHR----EMQ-----GG--V-EDDIALTAYVLIALLEAGSLCDS-EKPEYENAINKALNYLERHL 126 (246)
T ss_dssp HHBETTSEB--SSS-SSG----GGS-----GG--G-THHHHHHHHHHHHHHHCHCCHTT-THHCHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCccccCCCcccc----ccC-----CC--C-CCCeeehHHHHHHHHhhhhhccc-cchhhHHHHHHHHHHHHHhc
Confidence 999999999632211000 000 00 0 12345799999999987632111 12344678888888887652
Q ss_pred c------------------------------------CCC---CccCCC-----------Cc-chhhHHHHHHHHHHHcC
Q 026400 168 K------------------------------------LDG---SWYGTW-----------GV-CFIYSTWWAISGLVAAE 196 (239)
Q Consensus 168 ~------------------------------------~dG---~w~g~~-----------g~-~~~~~T~~al~aL~~~g 196 (239)
. .+| .|...- +. ..+-.|++||+++...+
T Consensus 127 ~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~ 206 (246)
T PF07678_consen 127 DNIQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRG 206 (246)
T ss_dssp GCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence 2 111 121100 00 12457999999988872
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCccCCC
Q 026400 197 KTYSNCLAIRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 197 ~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
+.+...++++||.++|+..|||+..
T Consensus 207 ----~~~~~~~iv~WL~~qr~~~Ggf~ST 231 (246)
T PF07678_consen 207 ----DLEEASPIVRWLISQRNSGGGFGST 231 (246)
T ss_dssp ----CHHHHHHHHHHHHHCTTTTSSTSSH
T ss_pred ----cHHHHHHHHHHHHHhcCCCCccCcH
Confidence 4578889999999999999999864
No 46
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.09 E-value=1.6e-09 Score=92.47 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCc--ccC---CCCC
Q 026400 1 MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPE--IVG---EKME 75 (239)
Q Consensus 1 ~~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~--~~~---~~~~ 75 (239)
++++++||++||+++|.++ |+|.++++... .|...-+ +-| +.+..+|.+|..+.+..+. ... ....
T Consensus 65 y~~A~~rgld~LL~aQypn---GGWPQf~p~~~----~Y~~~IT-fND-~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~ 135 (290)
T TIGR02474 65 YRDAARKGIEYLLKAQYPN---GGWPQFYPLKG----GYSDAIT-YND-NAMVNVLTLLDDIANGKDPFDVFPDSTRTRA 135 (290)
T ss_pred HHHHHHHHHHHHHhhhCCC---CCcCcccCCcC----Ccccccc-cCc-HHHHHHHHHHHHHHhccCCcccccHHHHHHH
Confidence 4678999999999999995 99999987542 2221111 112 4556888888765432110 000 1234
Q ss_pred hHHHHhhhhHHhhcccCCcce-eeccCCCChhhhhhhchhhhhhhhhccCCCcc--chHHHHHHHHHhhhhCCCCchhhh
Q 026400 76 PERFYDAANFMLYIQSKTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVE--CTASALKAMTLFQKLYPKHKKNEV 152 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~Ta~~l~aL~~~~~~~~~~~~~~~ 152 (239)
..++.||++|||+.|-++||| +.|....... .+.| ....-+++++.. -|+.+|..|-.+.. | ..++
T Consensus 136 ~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~---tl~P---a~AR~yE~pSls~~ES~~iv~~LM~~~~--p---s~~i 204 (290)
T TIGR02474 136 KTAVTKGIECILKTQVVQNGKLTVWCQQHDAL---TLQP---KKARAYELPSLSSSESVGILLFLMTQPN--P---SAEI 204 (290)
T ss_pred HHHHHHHHHHHHHhhcccCCcCCchhhccCcc---cccc---ccccccCCcccccccHHHHHHHHhcCCC--C---CHHH
Confidence 678999999999999999988 3455332211 0111 111112344331 24445555444321 2 2467
Q ss_pred HHHHHHHHHHHHhcccCC
Q 026400 153 NNFITNGVKFTEDSQKLD 170 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~d 170 (239)
..+|..|++||.+...++
T Consensus 205 ~~ai~~A~~W~~~~~i~g 222 (290)
T TIGR02474 205 KEAIRAGVAWFDTSRIRG 222 (290)
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 899999999999998765
No 47
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.1e-09 Score=87.51 Aligned_cols=167 Identities=19% Similarity=0.238 Sum_probs=110.0
Q ss_pred HHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhH
Q 026400 6 MKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANF 85 (239)
Q Consensus 6 ~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~ 85 (239)
.+-..|+...|++| |+|.. -.|+ ..++.+ ..+|.+.++|+. . ++..-+++||+|
T Consensus 117 d~v~~yi~gLq~ed---GsF~g-------D~wG--EvDTRf---s~~av~~L~lLg--~---------ld~~nve~aVd~ 170 (329)
T KOG0366|consen 117 DKVASYIKGLQQED---GSFSG-------DIWG--EVDTRF---SYCAVACLALLG--K---------LDTINVEKAVDF 170 (329)
T ss_pred HHHHHHHHhhcCcC---CcccC-------Cccc--ccchhh---hHHHHHHHHHHh--h---------HHHhhHHHHHHH
Confidence 34578999999986 66541 2343 222222 234555444443 2 245678899999
Q ss_pred HhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHh
Q 026400 86 MLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTED 165 (239)
Q Consensus 86 Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~ 165 (239)
+++|-|-||||+.-....+ ...-.-.|+-+|+..++.+-- + .++--.||..
T Consensus 171 ~~~CyN~DGGFG~~pGaES---------------------HagqifcCvgaLai~~~L~~v-d-------~d~lgwwlce 221 (329)
T KOG0366|consen 171 VLSCYNFDGGFGCRPGAES---------------------HAGQIFCCVGALAITGKLHLV-D-------RDLLGWWLCE 221 (329)
T ss_pred HHhhcccCCCcCCCCCccc---------------------ccceehhhHHHHHHccchhhc-C-------HHHHHHHHHh
Confidence 9999999999985433211 111122477788887765321 1 1455679999
Q ss_pred cccCCCCccCCCC-cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccC-CCCccCCCCCcC
Q 026400 166 SQKLDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSC 229 (239)
Q Consensus 166 ~Q~~dG~w~g~~g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~-~dGgWg~~~~s~ 229 (239)
+|.+.|+-.|+-. -..+.-.+|++..|.-.|.-. ....++-++||++||. +.||+...+...
T Consensus 222 RQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~--wId~ekL~~FIl~cQd~~~GGfsDRpgd~ 285 (329)
T KOG0366|consen 222 RQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLH--WIDREKLTKFILACQDEETGGFSDRPGDE 285 (329)
T ss_pred ccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhh--hccHHHHHHHHHhcCCCCCCCcCCCCCCc
Confidence 9999999877641 122333688888888888763 4566789999999999 789999876443
No 48
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.3e-08 Score=84.20 Aligned_cols=160 Identities=23% Similarity=0.348 Sum_probs=106.7
Q ss_pred HHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcc--hHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 7 KAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDC--SSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 7 ~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~--Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
.-.+||.+.|+++ |+|.... | +. .|++. +|..+.+|+. ..+.+-...+|+
T Consensus 130 ~l~~fi~~lk~pd---GsF~~~~-------~--ge-----vDtr~~Y~al~ilsllg-----------~~~~~~~e~~vd 181 (342)
T COG5029 130 SLASFISGLKNPD---GSFRSDL-------E--GE-----VDTRFLYIALSILSLLG-----------DLDKELFEGAVD 181 (342)
T ss_pred HHHHHHHhccCCC---Cceeccc-------C--Cc-----chHHHHHHHHHHHHHHh-----------hcchhhhHHHHH
Confidence 4678999999985 7765321 1 11 22222 3444444442 124455677899
Q ss_pred HHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 85 FMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 85 ~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
||++|||=||||+.... +| +....|..||.+|+.+++.++-. .+++-++||.
T Consensus 182 yl~kCqnyeGGFg~~p~------------aE---------aHag~tFcalaalalL~~Ld~ls-------~~E~l~~Wl~ 233 (342)
T COG5029 182 YLKKCQNYEGGFGLCPY------------AE---------AHAGYTFCALAALALLGKLDKLS-------DVEKLIRWLA 233 (342)
T ss_pred HHHHhhccCCcccCCCc------------hh---------hccchHHHHHHHHHHHhcccccc-------hHHHHHHHHH
Confidence 99999999999984332 12 12345778899999988765432 2788899999
Q ss_pred hcccCCCCccCCC----CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC-CCccCCCCC
Q 026400 165 DSQKLDGSWYGTW----GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD-DGGWGESYL 227 (239)
Q Consensus 165 ~~Q~~dG~w~g~~----g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~-dGgWg~~~~ 227 (239)
++|.+.||+.|+- ..|| ..|++..|+-.+.. .--.-++-.+||+.||.+ .||+.....
T Consensus 234 ~RQ~ssgGl~GR~nKl~D~CY---s~WvlsSl~il~~~--~~in~e~L~~yiL~c~q~~sGGfsdrp~ 296 (342)
T COG5029 234 ERQLSSGGLNGRSNKLVDTCY---SFWVLSSLAILGKL--DFINTEELTDYILDCQQETSGGFSDRPG 296 (342)
T ss_pred HcccccCCcCCCcccCccchh---hhhhcchHHhcchh--hhcCHHHHHHHHHhhcccCCCCCCCCCc
Confidence 9999999998774 2233 45665555555533 223456788999999998 899987653
No 49
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.89 E-value=1.1e-08 Score=86.63 Aligned_cols=108 Identities=22% Similarity=0.150 Sum_probs=77.9
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+..=+++.|++||||+.|..+. ++++-.||.|+..|..+.+...- + ...|.++++
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~--------------------~~s~WLTAfv~k~f~~a~~~i~v-d----~~~i~~a~~ 56 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDS--------------------PSSTWLTAFVVKVFSQAKKYIFV-D----ENVICRAVK 56 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTS--------------------SBBHHHHHHHHHHHHHHTTTS-C-E----HHHHHHHHH
T ss_pred chHHHhcCCCCCCCeeccccCC--------------------cccHHHHHHHHHHHHHHHHhhcC-C----HHHHHHHHH
Confidence 3455788999999999882211 13344699999999988765322 2 478999999
Q ss_pred HHHhcccCCCCccCCC---C-------cchhhHHHHHHHHHHHcC------ccCCCHHHHHHHHHHHHhc
Q 026400 162 FTEDSQKLDGSWYGTW---G-------VCFIYSTWWAISGLVAAE------KTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~---g-------~~~~~~T~~al~aL~~~g------~~~~~~~~i~~a~~~L~~~ 215 (239)
||+++|++||+|...- . ...+.-|++++.||...+ .+. ....++||++||.+.
T Consensus 57 wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~-~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 57 WLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPE-YENAINKALNYLERH 125 (246)
T ss_dssp HHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHC-HHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchh-hHHHHHHHHHHHHHh
Confidence 9999999999996431 1 123557999999999987 222 468999999999876
No 50
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.77 E-value=1.1e-08 Score=87.50 Aligned_cols=160 Identities=11% Similarity=0.150 Sum_probs=93.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCC
Q 026400 47 PVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDY 126 (239)
Q Consensus 47 ~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 126 (239)
.|-+.|...|.-|+.+-.. .+.+.+.+++.+|++|||+.|-++|||+-+-+.... +...|. |.
T Consensus 36 iDN~aT~~ei~fLa~~y~~----t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~~~IT----fN-------- 98 (289)
T PF09492_consen 36 IDNDATTTEIRFLARVYQA----TKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YHDHIT----FN-------- 98 (289)
T ss_dssp -GGGTTHHHHHHHHHHHHH----CG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GGGSEE-----G--------
T ss_pred ccChhHHHHHHHHHHHHHH----hCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CCCceE----Ec--------
Confidence 4678889999988886542 134467899999999999999999999865443221 112221 10
Q ss_pred ccchHHHHHHHHHhhhhCCCC------chhhhHHHHHHHHHHHHhcccC-C---CCccCCCC---------cc------h
Q 026400 127 VECTASALKAMTLFQKLYPKH------KKNEVNNFITNGVKFTEDSQKL-D---GSWYGTWG---------VC------F 181 (239)
Q Consensus 127 ~~~Ta~~l~aL~~~~~~~~~~------~~~~~~~~i~ra~~~L~~~Q~~-d---G~w~g~~g---------~~------~ 181 (239)
-+....+|..|..+....+.. .+.++.++++||+++|++.|-. + -.|...+. .. .
T Consensus 99 Ddam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls 178 (289)
T PF09492_consen 99 DDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLS 178 (289)
T ss_dssp GGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEE
T ss_pred cHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccc
Confidence 123556777776654332222 3456788999999999999982 2 34522111 01 1
Q ss_pred hhHHHHHHHHHHHcCccC-CCHHHHHHHHHHHHhccCCCCccC
Q 026400 182 IYSTWWAISGLVAAEKTY-SNCLAIRKATDFLLNIQCDDGGWG 223 (239)
Q Consensus 182 ~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~~Q~~dGgWg 223 (239)
...|+-++..|+..-.+- ....+|+.|+.||.++.-++.-|-
T Consensus 179 ~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~~ 221 (289)
T PF09492_consen 179 GSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRWE 221 (289)
T ss_dssp CCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE-
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCceeE
Confidence 224666677777654321 124578899999998887776653
No 51
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.1e-07 Score=80.46 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=105.2
Q ss_pred HHHHHHhccCCCCCCCC--cchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh--hh
Q 026400 8 AHDFLKNSQVTDNPQGD--FRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD--AA 83 (239)
Q Consensus 8 a~~~l~~~Q~~~~~~g~--~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~--av 83 (239)
=++||-+.|........ ... ++.......++++.....|....|=.+|..|.-++ . +..+|++ .+
T Consensus 63 ~i~Wiy~~~v~~~dr~~~k~~G-F~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lG--------d--dLsrlDrksil 131 (347)
T KOG0367|consen 63 IIEWIYKLQVTPTDRTNLKICG-FRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILG--------D--DLSRLDRKSIL 131 (347)
T ss_pred HHHHHHhceeccccCCCceeee-eeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHc--------c--hHhhhhHHHHH
Confidence 37999999986310011 111 11222344444432222333334434444444333 2 2233333 35
Q ss_pred hHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHH
Q 026400 84 NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFT 163 (239)
Q Consensus 84 ~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L 163 (239)
+++..+|.+||+|.....+... |-+++.+-+.+.-.|-.+. . --.++++.|+
T Consensus 132 ~~v~~~Q~~dGsF~~~~~GSe~-----------------DmRFvYcA~aI~ymLd~~s----~-------iD~ek~~~yI 183 (347)
T KOG0367|consen 132 RFVSACQRPDGSFVSINVGSES-----------------DMRFVYCAVAICYMLDFWS----G-------IDKEKLIGYI 183 (347)
T ss_pred HHHHHhcCCCCceeecCCCCch-----------------hhHHHHHHHHHHHHhcccc----c-------cCHHHHHHHH
Confidence 8889999999999643322111 1123333222222222221 1 1247889999
Q ss_pred HhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCcc----CCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 164 EDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKT----YSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 164 ~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~----~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
++.|+-||+|.-.- +..+.-.|..||..|.-.|.- ..+...++|-++|++.+|..+||+-....-..++.|.
T Consensus 184 ~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYa 260 (347)
T KOG0367|consen 184 RSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYA 260 (347)
T ss_pred HHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHH
Confidence 99999999995322 444444567777666554421 1123448999999999999999998877666776664
No 52
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.8e-07 Score=78.57 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=91.4
Q ss_pred CCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCc
Q 026400 48 VSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYV 127 (239)
Q Consensus 48 ~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 127 (239)
..-.|-.++.+|..++... -.+...-++-.+||.++|++||+|..-..... |.+.
T Consensus 103 hL~sT~~Ai~~L~~~d~~~------~~~~idr~~l~~fi~~lk~pdGsF~~~~~gev------------------Dtr~- 157 (342)
T COG5029 103 HLASTVFAIQSLAMLDSLD------VLSRIDRDSLASFISGLKNPDGSFRSDLEGEV------------------DTRF- 157 (342)
T ss_pred hHHHHHHHHHHHHHhcccc------ccchhhHHHHHHHHHhccCCCCceecccCCcc------------------hHHH-
Confidence 3456778888888876421 11222223457999999999999963221110 1111
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHH
Q 026400 128 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIR 206 (239)
Q Consensus 128 ~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~ 206 (239)
--.++..|..++... .+..+-+++||.+.|+-||+|+.-- ...+.-.|..|+.+|+-.+.-. .-..++
T Consensus 158 --~Y~al~ilsllg~~~--------~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld-~ls~~E 226 (342)
T COG5029 158 --LYIALSILSLLGDLD--------KELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLD-KLSDVE 226 (342)
T ss_pred --HHHHHHHHHHHhhcc--------hhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhccc-ccchHH
Confidence 112333344444321 2556788899999999999995432 2223334566666665554321 112288
Q ss_pred HHHHHHHhccCCCCccCCCCCcCCCCcc
Q 026400 207 KATDFLLNIQCDDGGWGESYLSCPNKLH 234 (239)
Q Consensus 207 ~a~~~L~~~Q~~dGgWg~~~~s~~~~~y 234 (239)
+-++||..+|-+.||+.....--.+..|
T Consensus 227 ~l~~Wl~~RQ~ssgGl~GR~nKl~D~CY 254 (342)
T COG5029 227 KLIRWLAERQLSSGGLNGRSNKLVDTCY 254 (342)
T ss_pred HHHHHHHHcccccCCcCCCcccCccchh
Confidence 9999999999999998776655555555
No 53
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8.9e-07 Score=76.40 Aligned_cols=128 Identities=19% Similarity=0.156 Sum_probs=87.1
Q ss_pred CCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhh
Q 026400 73 KMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV 152 (239)
Q Consensus 73 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~ 152 (239)
.++++.+.++|+||..+|.|.|||+.- ++. ++ ....|-.++.+|...+... .++
T Consensus 116 ~~dd~v~~~~i~fL~~c~~PeGGfgGG-PGQ-------l~-------------HLA~TYAAVnaL~~~~~e~-A~~---- 169 (423)
T KOG0365|consen 116 WLDDDVKENAIDFLFTCQGPEGGFGGG-PGQ-------LP-------------HLAPTYAAVNALCLCGSED-AYS---- 169 (423)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCC-Ccc-------ch-------------hhhHHHHHHHHHHhcCcHH-HHH----
Confidence 467889999999999999999999732 211 11 1224667888998876431 111
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCc
Q 026400 153 NNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS 228 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s 228 (239)
.-.-++-.+||.+..+|||+|.=-- |...+-+...|+....-.+.+ .++.-+--.+||.+||+-.||+|..+.+
T Consensus 170 ~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~--~deL~eG~~~wi~~CQtyEGG~GG~P~~ 244 (423)
T KOG0365|consen 170 SINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIP--MDELFEGTLDWIASCQTYEGGFGGEPGV 244 (423)
T ss_pred HhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhcccccCCcCCCccc
Confidence 1123567899999999999994211 444444444444333334555 3688888999999999999999976543
No 54
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.34 E-value=1e-06 Score=75.53 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcc--cC---CCCC
Q 026400 1 MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEI--VG---EKME 75 (239)
Q Consensus 1 ~~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~--~~---~~~~ 75 (239)
+++++.||++||+++|.+ .|+|.++||.. +| |.+.-+.. =|....+|..|..+.+....+ .. ....
T Consensus 60 y~~A~~kgl~ylL~aQyp---nGGWPQ~yP~~--~~--Y~~~ITfN--Ddam~~vl~lL~~v~~~~~~~~~v~~~~~~r~ 130 (289)
T PF09492_consen 60 YREAFLKGLDYLLKAQYP---NGGWPQFYPLR--GG--YHDHITFN--DDAMVNVLELLRDVAEGKGDFAFVDESLRARA 130 (289)
T ss_dssp HHHHHHHHHHHHHHHS-T---TS--BSECS----SG--GGGSEE-G--GGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC---CCCCCccCCCC--CC--CCCceEEc--cHHHHHHHHHHHHHHhhcCCccccCHHHHHHH
Confidence 468899999999999998 49999998753 22 43222221 256677788787776543211 00 0023
Q ss_pred hHHHHhhhhHHhhcccCC----ccee-eccCCCChhhhhhhchhhhhhhhhccCCCc--cchHHHHHHHHHhhhhCCCCc
Q 026400 76 PERFYDAANFMLYIQSKT----GGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYV--ECTASALKAMTLFQKLYPKHK 148 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~d----Ggw~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~Ta~~l~aL~~~~~~~~~~~ 148 (239)
.+++.|++++||++|-.- -+|+ -++... ..| ....-+++++. .-|+.+|..|-.+.. |
T Consensus 131 ~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~T------l~P----a~AR~yE~pSls~~ES~~iv~~LM~~~~--p--- 195 (289)
T PF09492_consen 131 RAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVT------LQP----AWARAYEPPSLSGSESVGIVRFLMSLPN--P--- 195 (289)
T ss_dssp HHHHHHHHHHHHHHS-EETTEE----SEE-TTT-------SB-------STT--SSEECCCHHHHHHHHCTSSS------
T ss_pred HHHHHHHHHHHHHHHcccCCCCCchhhccCccc------ccc----cccccCCCcccccccHHHHHHHHhcCCC--C---
Confidence 678999999999999832 4664 122210 001 11111233333 225556666554422 2
Q ss_pred hhhhHHHHHHHHHHHHhcccCCCCc
Q 026400 149 KNEVNNFITNGVKFTEDSQKLDGSW 173 (239)
Q Consensus 149 ~~~~~~~i~ra~~~L~~~Q~~dG~w 173 (239)
..++..+|..|++||.+...++.-|
T Consensus 196 s~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 196 SPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp -HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhCcCCCcee
Confidence 2677899999999999998876653
No 55
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.2e-06 Score=70.43 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=85.6
Q ss_pred HHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 026400 79 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 158 (239)
Q Consensus 79 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~r 158 (239)
-.+++.||+++|+=||||+.-... | +.-..|..+|..|+..++..|..-.. +..++|
T Consensus 176 ~ek~~~yI~~~q~YdgGfg~~pg~------------E---------sHgG~TfCAlAsL~L~~~l~~e~l~~--~~~~er 232 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYDGGFGQHPGG------------E---------SHGGATFCALASLALMGKLIPEELSN--TSKVER 232 (347)
T ss_pred HHHHHHHHHHhhccccccccCCCC------------C---------CCcchhHHHHHHHHHHhhhhhhhhcc--ccCHHH
Confidence 457899999999999999743221 1 23345888899999887764421100 123899
Q ss_pred HHHHHHhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCC-CccCCCCCcCCC
Q 026400 159 GVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD-GGWGESYLSCPN 231 (239)
Q Consensus 159 a~~~L~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~d-GgWg~~~~s~~~ 231 (239)
-++|++.+|..+|||.|+- -+..+.-..|+...|.-.+... -..-++-.+||+++|..= |||...+....+
T Consensus 233 lirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~--~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD 305 (347)
T KOG0367|consen 233 LIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADW--LIDKQVLRKFLLSTQDKLIGGFSKWPEEDPD 305 (347)
T ss_pred HHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchH--hhhHHHHHHHHHHhhhhhcCcccCCCccCch
Confidence 9999999999999998874 2222222345555555444321 234457788999999986 999887665443
No 56
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=9.2e-06 Score=70.25 Aligned_cols=165 Identities=16% Similarity=0.237 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh-
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD- 81 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~- 81 (239)
...+++++||...|.++ |+|. | .+..++....|=.++.||...+... .-.+|.|
T Consensus 120 ~v~~~~i~fL~~c~~Pe---GGfg--------G------GPGQl~HLA~TYAAVnaL~~~~~e~--------A~~~InR~ 174 (423)
T KOG0365|consen 120 DVKENAIDFLFTCQGPE---GGFG--------G------GPGQLPHLAPTYAAVNALCLCGSED--------AYSSINRE 174 (423)
T ss_pred HHHHHHHHHHHhcCCCC---CCCC--------C------CCccchhhhHHHHHHHHHHhcCcHH--------HHHHhhHH
Confidence 46789999999999985 5543 1 2234466777888889998876521 1233433
Q ss_pred -hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHH
Q 026400 82 -AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGV 160 (239)
Q Consensus 82 -av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~ 160 (239)
-.+||.++.++||||.-...+.. |-+.+. +|.++..|... +. ++..+-..
T Consensus 175 ~l~~fL~slK~~dGgFrmh~~GE~------------------DvRs~Y-cA~svasllni----~~------deL~eG~~ 225 (423)
T KOG0365|consen 175 KLYQFLFSLKDPDGGFRMHVEGEV------------------DVRSAY-CALSVASLLNI----PM------DELFEGTL 225 (423)
T ss_pred HHHHHHHHhcCCCCCeEeecCCcc------------------hHHHHH-HHHHHHHHHCC----Cc------HHHHHHHH
Confidence 46999999999999974332211 101111 22222222211 11 25667788
Q ss_pred HHHHhcccCCCCccCCCC----cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccC-CCCccCCCC
Q 026400 161 KFTEDSQKLDGSWYGTWG----VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESY 226 (239)
Q Consensus 161 ~~L~~~Q~~dG~w~g~~g----~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~-~dGgWg~~~ 226 (239)
+||.+.|+-.||++|.-+ ..| |..++.+|+-.+.. +.-.+++-++|...+|. ..|||-...
T Consensus 226 ~wi~~CQtyEGG~GG~P~~EAHGGY---TFCalAalalLn~~--d~ln~~~Ll~W~~~RQm~~E~GFqGRt 291 (423)
T KOG0365|consen 226 DWIASCQTYEGGFGGEPGVEAHGGY---TFCALAALALLNEM--DQLNLEKLLEWAVRRQMRFEGGFQGRT 291 (423)
T ss_pred HHHHhcccccCCcCCCccccccCCe---eHHHHHHHHHHhhh--hhhCHHHHHHHHHHhhhhhhccccccc
Confidence 999999999999976532 133 44455555554433 34567899999999999 689986543
No 57
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.24 E-value=3.2e-06 Score=52.01 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcccCCCCccCCC-CcchhhHHHHHHHHHHHcC
Q 026400 156 ITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAE 196 (239)
Q Consensus 156 i~ra~~~L~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g 196 (239)
++++++||++.|++||+|.+.+ +..+++.|.+++.+|.-.|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 6789999999999999998877 4567889999998887543
No 58
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=98.20 E-value=2e-05 Score=68.58 Aligned_cols=92 Identities=26% Similarity=0.253 Sum_probs=69.3
Q ss_pred CccchHHHHHHHHHhhhhCCC--CchhhhHHHHHHHHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCC-H
Q 026400 126 YVECTASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSN-C 202 (239)
Q Consensus 126 ~~~~Ta~~l~aL~~~~~~~~~--~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~-~ 202 (239)
.+|++|.+++||..+....+. ...+++..+|++.++.|++.|.+||.++ .+|.|..|++||...+..+.. .
T Consensus 185 sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G------NiySTglAmQAL~~~~~~~~~~~ 258 (326)
T PF01122_consen 185 SVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG------NIYSTGLAMQALSVSPSPPSESE 258 (326)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS------STTTHHHHHHHHTT-SS-SSHHH
T ss_pred CccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc------chhhHHHHHHHHhcCCCCCcchh
Confidence 467899999999987654332 2336788899999999999999999984 378999999999999876521 3
Q ss_pred HHHHHHHHHHHhccCCCCccCC
Q 026400 203 LAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 203 ~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
....+++++|++.. ++|.|..
T Consensus 259 w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 259 WNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHHHHH-TTTTT-S
T ss_pred hHHHHHHHHHHHHh-hcCCCCC
Confidence 67889999999865 6999875
No 59
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.00 E-value=3.9e-05 Score=62.49 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCC-cchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVS-DCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA 83 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~-d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av 83 (239)
+.+-++||...|+.| ||.+|-. ..||+ .+|=.++..+-.++. ..++.++.|
T Consensus 8 l~rvi~fi~~Rrhed---------------GGy~f~~---~Lpdti~~TyYAi~i~s~lg~----------evPr~Ekti 59 (274)
T COG1689 8 LNRVIEFIEKRRHED---------------GGYCFVS---QLPDTINDTYYAIKIYSLLGH----------EVPRKEKTI 59 (274)
T ss_pred HHHHHHHHHHhhcCC---------------CCeEEec---cCcchhhhhhhhhhhhhhcCC----------cCchHHHHH
Confidence 567789999999974 4455421 22444 667677766666654 335577899
Q ss_pred hHHhh-cccCCccee
Q 026400 84 NFMLY-IQSKTGGIT 97 (239)
Q Consensus 84 ~~Ll~-~Q~~dGgw~ 97 (239)
+||.+ +|..-+|+.
T Consensus 60 efL~d~~qt~~~~~a 74 (274)
T COG1689 60 EFLYDQMQTAGVGVA 74 (274)
T ss_pred HHHHHHHHHhhhHHH
Confidence 99987 566777764
No 60
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.75 E-value=1.6e-05 Score=48.86 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhccCCCCccCCCCCcCCCCcc
Q 026400 204 AIRKATDFLLNIQCDDGGWGESYLSCPNKLH 234 (239)
Q Consensus 204 ~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y 234 (239)
.++++++||+++|++||||+..+....+..|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~ 32 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCY 32 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHH
Confidence 4789999999999999999998876555444
No 61
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.71 E-value=0.00028 Score=57.59 Aligned_cols=61 Identities=23% Similarity=0.429 Sum_probs=48.2
Q ss_pred CCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccCCC--CcchhhHHHHHHHHHHH
Q 026400 124 HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW--GVCFIYSTWWAISGLVA 194 (239)
Q Consensus 124 ~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~--g~~~~~~T~~al~aL~~ 194 (239)
|||.+.|-.++..|..+++. -.+.+-++|+.+.||+||||.-+. |.+..-.|..|+..|..
T Consensus 208 PPYiE~t~ya~r~lelL~~k----------~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 208 PPYIEPTFYALRGLELLGGK----------YCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLAS 270 (274)
T ss_pred CCccchHHHHHhHHHHHccC----------cCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHH
Confidence 57888899999999998753 246778899999999999996554 67767778888766653
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.22 E-value=0.00089 Score=58.47 Aligned_cols=107 Identities=10% Similarity=0.028 Sum_probs=70.7
Q ss_pred CCcchHHHHHHHHHhcCCCCcccC-CCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCC
Q 026400 48 VSDCSSESFVCCLHLSTMPPEIVG-EKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDY 126 (239)
Q Consensus 48 ~~d~Ta~~l~aL~~~~~~~~~~~~-~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 126 (239)
.+|++|++++||..+.+.-+...+ ...-...|++.++.|++.|.+||.|+.
T Consensus 185 sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN---------------------------- 236 (326)
T PF01122_consen 185 SVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN---------------------------- 236 (326)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS----------------------------
T ss_pred CccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc----------------------------
Confidence 589999999999998764321000 001234566667888999999999971
Q ss_pred ccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHH
Q 026400 127 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVA 194 (239)
Q Consensus 127 ~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~ 194 (239)
+..|+.++.||....... . +-.-...++.++|++.. ++|.|. ....++.+|-+|..
T Consensus 237 iySTglAmQAL~~~~~~~-~----~~~w~C~k~~~~ll~~i-~~G~F~------nP~a~aQiLPaL~g 292 (326)
T PF01122_consen 237 IYSTGLAMQALSVSPSPP-S----ESEWNCQKALDALLKEI-SQGAFQ------NPMAIAQILPALNG 292 (326)
T ss_dssp TTTHHHHHHHHTT-SS-S-S----HHHHHHHHHHHHHHHHH-TTTTT-------SHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhcCCCCC-c----chhhHHHHHHHHHHHHh-hcCCCC------CHHHHHHHHHHHcC
Confidence 235999999998876421 1 11356889999999864 699883 24577788878773
No 63
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=96.46 E-value=0.026 Score=54.06 Aligned_cols=120 Identities=18% Similarity=0.104 Sum_probs=73.9
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceee-ccCCCChhhhhhhchhhhhhhhhcc-CCC
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIE-HDY 126 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~-~~~ 126 (239)
+=|++.+++||+.++ ..+..++.++||++.|.+||+|.. +..+..... +. ..-
T Consensus 297 ~RD~~~~a~Al~~~G-----------~~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~~--------------~~~~~Q 351 (616)
T TIGR01577 297 GRDASYIATALDRAG-----------YHDRVDRFFRWAMQTQSRDGSWQQRYYLNGRLAP--------------LQWGLQ 351 (616)
T ss_pred cccHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhhCcCCCcceEEecCCCCCC--------------CCCCcc
Confidence 468999999999876 357788999999999999999842 223322110 01 122
Q ss_pred ccchHHHHHHHHHhhhhCCC-CchhhhHHHHHHHHHHHHhcccC------CCCccCCCCcchhhHHHHHHHHHHH
Q 026400 127 VECTASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKL------DGSWYGTWGVCFIYSTWWAISGLVA 194 (239)
Q Consensus 127 ~~~Ta~~l~aL~~~~~~~~~-~~~~~~~~~i~ra~~~L~~~Q~~------dG~w~g~~g~~~~~~T~~al~aL~~ 194 (239)
.+.++.+|.++..+.....+ .-.+++-+.++++++|+.....+ .|-|..+.|. +++..+++..||..
T Consensus 352 ~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lWEer~G~-~~~t~a~~~aAL~~ 425 (616)
T TIGR01577 352 IDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLWEEREGV-FTYTASAVYGGLDA 425 (616)
T ss_pred ccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccceecCCc-cCccHHHHHHHHHH
Confidence 35688888887654332111 11234456799999999996532 3445333343 45555555555554
No 64
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.20 E-value=0.05 Score=52.22 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCC----CCC---cccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCC
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHI----SKG---GWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKM 74 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~----~~g---gw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~ 74 (239)
++.+.+++--|+.++..+ +.|..=+- +.. ..| .|.|.. .| +-|.+.++.||+.++
T Consensus 250 ~~~~~rS~lvLK~~~d~~-~~GAiIAA-~Tts~pe~~g~~~n~dYry---vW--~RD~a~~a~AL~~~G----------- 311 (648)
T TIGR01535 250 NSLYYVSMMILKAHEDKT-NPGAYIAS-LSIPWGDGQADDNTGGYHL---VW--PRDLYQVANAFLAAG----------- 311 (648)
T ss_pred HHHHHHHHHHHHHhcCCC-CCCcEEEe-cCCCCCccCCCCCCCceEE---Ee--hhhHHHHHHHHHHCC-----------
Confidence 345677777777777652 23443111 100 011 133321 23 468899999999986
Q ss_pred ChHHHHhhhhHHhhcccCCccee-eccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhH
Q 026400 75 EPERFYDAANFMLYIQSKTGGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~~dGgw~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
+.+...+.++||.+.|.++|.|. .+..+..+.|.+ --.+.|+.+|.++..+.+.. ...+.
T Consensus 312 ~~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~---------------iQlD~~g~~i~~~~~l~~~~----~~~~~ 372 (648)
T TIGR01535 312 DVDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTG---------------IQLDETAFPILLAYRLHRYD----HAFYD 372 (648)
T ss_pred CHHHHHHHHHHHHHHhccCCCcCceeccCCCCCCCC---------------ccccHHHHHHHHHHHHHHcC----cHHHH
Confidence 46778899999999999999983 234443332211 12367899888776654321 13345
Q ss_pred HHHHHHHHHHHhccc--CCCCccCCCCcchhhHHHHHHHHHHH
Q 026400 154 NFITNGVKFTEDSQK--LDGSWYGTWGVCFIYSTWWAISGLVA 194 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~--~dG~w~g~~g~~~~~~T~~al~aL~~ 194 (239)
+.|+++++||.+.-. ..|-|-.+.|. ..|..+.++.||..
T Consensus 373 ~~vk~aadfl~~~~p~p~~d~WEer~g~-~~~T~a~v~aaL~~ 414 (648)
T TIGR01535 373 KMLKPAADFIVKNGPKTGQERWEEIGGY-SPSTLAAEIAGLTA 414 (648)
T ss_pred HHHHHHHHHHHHcCCCCCCCcccccCCc-CchhHHHHHHHHHH
Confidence 789999999998643 23444322233 23444444455544
No 65
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.11 E-value=0.038 Score=48.71 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhhhhCCC--CchhhhHHHHHHHHHHHHhcccCCCCccCCC---C---cchhhHHHHHHHHHHH---cCcc
Q 026400 130 TASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTW---G---VCFIYSTWWAISGLVA---AEKT 198 (239)
Q Consensus 130 Ta~~l~aL~~~~~~~~~--~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~---g---~~~~~~T~~al~aL~~---~g~~ 198 (239)
.+-++.+|...-...|. ..++.+.+.+++.++.|...|.+||.|+-.. . ...+.+|+++..+|.. .|..
T Consensus 189 ~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~ 268 (336)
T PF07470_consen 189 NGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLL 268 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCC
Confidence 45566666664433332 1234567788899999999999999996433 1 1236678888888754 3332
Q ss_pred C--CCHHHHHHHHHHHHhc-cCCCCc--cCCC
Q 026400 199 Y--SNCLAIRKATDFLLNI-QCDDGG--WGES 225 (239)
Q Consensus 199 ~--~~~~~i~~a~~~L~~~-Q~~dGg--Wg~~ 225 (239)
. .-.+.++|+.+.|++. -++||. +-..
T Consensus 269 d~~~y~~~a~~a~~~l~~~~~~~dG~~~~~~~ 300 (336)
T PF07470_consen 269 DPEEYRPAAEKALEALLSNAIDPDGKLGLKGV 300 (336)
T ss_dssp THHHHHHHHHHHHHHHHHCEB-TTSSSBBTCE
T ss_pred ccHHHHHHHHHHHHHHHhCccCCCCCeEEeee
Confidence 1 1246888999999999 888887 5443
No 66
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.06 E-value=0.013 Score=57.12 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcccCCCCccCCCC---cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhc
Q 026400 155 FITNGVKFTEDSQKLDGSWYGTWG---VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 155 ~i~ra~~~L~~~Q~~dG~w~g~~g---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 215 (239)
..-.+++||+..|.+||||+..-+ .....+|..++.||...... ...|+|++.||.+.
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fi~~n 176 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH---PEKCEKGMSFFREN 176 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc---HHHHHHHHHHHHHH
Confidence 455789999999999999954321 23467899999999886554 47789999999764
No 67
>PLN02592 ent-copalyl diphosphate synthase
Probab=95.39 E-value=0.021 Score=55.78 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=43.0
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
+..-.+++||+.+|.+||||+.-.. ... . ...-.|..|+.||...... ...|
T Consensus 115 p~FP~~~~wIl~nQ~~DGsWG~~~~-~~~--------~----------D~ll~TLAcvlAL~~w~~~---------~~~i 166 (800)
T PLN02592 115 PQFPSSLQWIANNQLSDGSWGDAYL-FSA--------H----------DRLINTLACVVALKSWNLH---------PEKC 166 (800)
T ss_pred CCCHHHHHHHHHccCCCCCCCCCCC-cch--------H----------HHHHhHHHHHHHHHHhhcc---------HHHH
Confidence 3455789999999999999984210 000 0 0123588899999887542 2578
Q ss_pred HHHHHHHHhcc
Q 026400 157 TNGVKFTEDSQ 167 (239)
Q Consensus 157 ~ra~~~L~~~Q 167 (239)
.||+.||.+.-
T Consensus 167 ~rGl~fi~~nl 177 (800)
T PLN02592 167 EKGMSFFRENI 177 (800)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 68
>PLN02279 ent-kaur-16-ene synthase
Probab=94.63 E-value=0.038 Score=54.09 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
+.--.+++||+.+|.+||+|+.... .+ ++. ....-.|..|+.||..++.. + ..+
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~--~~-~~~--------------~D~ll~TlAcvlAL~~w~~~-~--------~~~ 126 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHD--HP-LLV--------------KDALSSTLASILALKKWGVG-E--------EQI 126 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCC--Cc-chh--------------HHhhHHHHHHHHHHHHHhcC-c--------ccc
Confidence 3445789999999999999984311 11 000 01223588999999998653 2 234
Q ss_pred HHHHHHHH
Q 026400 157 TNGVKFTE 164 (239)
Q Consensus 157 ~ra~~~L~ 164 (239)
+|++.|+.
T Consensus 127 ~~gl~fi~ 134 (784)
T PLN02279 127 NKGLQFIE 134 (784)
T ss_pred hhhHHHHH
Confidence 55555555
No 69
>PLN02279 ent-kaur-16-ene synthase
Probab=94.40 E-value=0.059 Score=52.80 Aligned_cols=58 Identities=24% Similarity=0.138 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcccCCCCccCCC-C----cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHh
Q 026400 154 NFITNGVKFTEDSQKLDGSWYGTW-G----VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLN 214 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~g~~-g----~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~ 214 (239)
+.--.+++||+..|.+||+|+..- . ...+.+|..++.||...+.. ...+++++.||.+
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~---~~~~~~gl~fi~~ 135 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG---EEQINKGLQFIEL 135 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC---cccchhhHHHHHH
Confidence 345678999999999999995321 1 23467899999999987664 3456888888874
No 70
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=94.10 E-value=0.67 Score=40.76 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=61.3
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhh-hCCCCchhhhHH
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQK-LYPKHKKNEVNN 154 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~-~~~~~~~~~~~~ 154 (239)
.+...+.++.|...|.+||.|.. ..+.+. ...+.+.++.++.+.+.+.. ...-.+..+..+
T Consensus 214 ~~~~~~~~~~l~~~q~~~G~w~~-~~~~~~-----------------~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~ 275 (336)
T PF07470_consen 214 LEIAKKLADALARYQDEDGLWYQ-DLDDPD-----------------PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRP 275 (336)
T ss_dssp HHHHHHHHHHHHTTSTTTSBEBS-BTTTTT-----------------TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcce-ecCCCC-----------------CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 44456667888999999999963 222110 01345667777776665431 111123566778
Q ss_pred HHHHHHHHHHhc-ccCCCC--ccCCC---C----------cchhhHHHHHHHHHHH
Q 026400 155 FITNGVKFTEDS-QKLDGS--WYGTW---G----------VCFIYSTWWAISGLVA 194 (239)
Q Consensus 155 ~i~ra~~~L~~~-Q~~dG~--w~g~~---g----------~~~~~~T~~al~aL~~ 194 (239)
+++|+++.|.+. -++||. +.+.- + ....|+....|+|+.+
T Consensus 276 ~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e 331 (336)
T PF07470_consen 276 AAEKALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAE 331 (336)
T ss_dssp HHHHHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHH
Confidence 999999999999 788887 53221 1 1124677777777664
No 71
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=94.03 E-value=4.1 Score=36.16 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=80.6
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
++.++.|......... .|+|-.+. ...|=+.. ....+-.+|.+|-++..+...- +.+...+...++++
T Consensus 16 ~~~~~~fw~~~~~d~~-~gg~~~~l---~~~g~~~~----~~k~~~~~ar~i~~~a~a~~~~----~~~~~l~~A~~~~~ 83 (384)
T cd00249 16 LEDLLPFWLEAGLDRE-AGGFFECL---DRDGQPFD----TDRRLWLQARQVYCFAVAYLLG----WRPEWLEAAEHGLE 83 (384)
T ss_pred HHHHHHHHHhcCCCCC-CCCeEEEE---CCCCCCCC----CCCeEEEecHHHHHHHHHHHhc----CChhHHHHHHHHHH
Confidence 5677888877654321 24433221 12222221 1133567899999998865431 23345677888899
Q ss_pred HHhhcc-cCC-cceee-ccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 85 FMLYIQ-SKT-GGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 85 ~Ll~~Q-~~d-Ggw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
||.+.- .++ |||-. +..+..+. ........-+++|.+|+.+....+ ..+..+.+++.++
T Consensus 84 fl~~~~~d~~~Gg~~~~~~~~g~~~---------------~~~~~l~~~a~~l~ala~~~~at~---d~~~l~~A~~~~~ 145 (384)
T cd00249 84 YLDRHGRDPDHGGWYFALDQDGRPV---------------DATKDLYSHAFALLAAAQAAKVGG---DPEARALAEETID 145 (384)
T ss_pred HHHHhCcCCCCCCEEEEEcCCCCCc---------------ccccchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 999854 446 99952 32222110 011234557788999888665432 2345678889999
Q ss_pred HHHhccc-CCCCc
Q 026400 162 FTEDSQK-LDGSW 173 (239)
Q Consensus 162 ~L~~~Q~-~dG~w 173 (239)
+|.+... ++|++
T Consensus 146 ~l~~~~~~~~g~~ 158 (384)
T cd00249 146 LLERRFWEDHPGA 158 (384)
T ss_pred HHHHHhccCCCcc
Confidence 9988874 45654
No 72
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=93.36 E-value=1.5 Score=41.17 Aligned_cols=146 Identities=9% Similarity=0.004 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHhccCCC-CCCCCcch--hcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChH
Q 026400 1 MIPILMKAHDFLKNSQVTD-NPQGDFRS--MFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPE 77 (239)
Q Consensus 1 ~~~~l~~a~~~l~~~Q~~~-~~~g~~~~--~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~ 77 (239)
|++.++...++++..|... ...+-..+ .......|||.-......+. ..+++.-|.|+..+-... +.+.-.+
T Consensus 9 ~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~-~~~~g~wl~a~a~~~~~~----~D~~l~~ 83 (520)
T PF07944_consen 9 WKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFR-GHDVGKWLEAAAYAYAYT----GDPELKA 83 (520)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccC-CCcHHHHHHHHHHHHHHC----CCHHHHH
Confidence 3567778888888777521 00111111 11123457776222333333 346777777766643321 2333577
Q ss_pred HHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHH
Q 026400 78 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 157 (239)
Q Consensus 78 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ 157 (239)
++++.|+.|+++|.+||-.+++...... ..-..+.. +.....+..++|++|..+.... ..+++.+++.
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~~~~~------~~~~~w~~---~~he~Y~~~~ll~gl~~~y~~t---G~~~~L~v~~ 151 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPEERNF------NPDDRWAP---DMHELYCLGKLLEGLIDYYEAT---GNERALDVAT 151 (520)
T ss_pred HHHHHHHHHHHhccCCceeccccccccc------ccccCCCC---CccceehHhHHHHHHHHHHHHH---CcHHHHHHHH
Confidence 8899999999999999977765432200 00000100 0011245667888888765432 2345678899
Q ss_pred HHHHHH
Q 026400 158 NGVKFT 163 (239)
Q Consensus 158 ra~~~L 163 (239)
|..+|+
T Consensus 152 k~ad~~ 157 (520)
T PF07944_consen 152 KLADWV 157 (520)
T ss_pred HHHHHH
Confidence 999999
No 73
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=92.42 E-value=4.2 Score=39.31 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
.+..++.++||.+.|..+ |.|-+.| ...|-+.-. + .-.|.||..|.++..+.+. +.....+.|++
T Consensus 313 ~~~a~~~~~~l~~~~~~~---G~~lq~y---~vdG~~~~~---~-iQlD~~g~~i~~~~~l~~~-----~~~~~~~~vk~ 377 (648)
T TIGR01535 313 VDSALRSLDYLAKVQQDN---GMFPQNS---WVDGKPYWT---G-IQLDETAFPILLAYRLHRY-----DHAFYDKMLKP 377 (648)
T ss_pred HHHHHHHHHHHHHHhccC---CCcCcee---ccCCCCCCC---C-ccccHHHHHHHHHHHHHHc-----CcHHHHHHHHH
Confidence 456789999999999974 6654332 122222211 1 1268999999988766542 12224567999
Q ss_pred hhhHHhhc
Q 026400 82 AANFMLYI 89 (239)
Q Consensus 82 av~~Ll~~ 89 (239)
+++||...
T Consensus 378 aadfl~~~ 385 (648)
T TIGR01535 378 AADFIVKN 385 (648)
T ss_pred HHHHHHHc
Confidence 99999986
No 74
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.8 Score=47.88 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccCCCCc----chhhHHHHHHHHHHHcCccC-CCHHH
Q 026400 130 TASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV----CFIYSTWWAISGLVAAEKTY-SNCLA 204 (239)
Q Consensus 130 Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~----~~~~~T~~al~aL~~~g~~~-~~~~~ 204 (239)
+-.++.-|..-.+..|..+ +.....++.|..=.+..+++||++. .||. ..+--|+++|.-|..+.... -+...
T Consensus 948 ni~v~~YL~~t~q~~~~~k-~ka~~~l~~GyqrqL~yk~~DgSyS-aFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~ 1025 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLTPELK-RKALKFLEQGYQRQLTYKRADGSYS-AFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNV 1025 (1436)
T ss_pred hhhHHHHHhhhhccChhHH-HHHHHHHHHHHHHHHhhhccCCChh-hhcCCCCcccHHHHHHHHHHhhhccCceEecHHH
Confidence 4445555555544444332 3345678888888888899999983 5543 23556888988888875432 14678
Q ss_pred HHHHHHHHHhccCCCCccCCC
Q 026400 205 IRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 205 i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
+.+|++||..+|.++|+|-+.
T Consensus 1026 i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1026 ITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred HHHHHHHHHHhhccCceEecc
Confidence 999999999999999999764
No 75
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.41 Score=49.90 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=49.8
Q ss_pred HhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHH
Q 026400 80 YDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNG 159 (239)
Q Consensus 80 ~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra 159 (239)
..+..-++..+++||+|+.|...... .....|+.+|..|+...... ..+ ...+.++
T Consensus 974 ~~GyqrqL~yk~~DgSySaFg~~~~~-------------------~stWLtafvlr~f~~a~~~i-~id----~~~i~~a 1029 (1436)
T KOG1366|consen 974 EQGYQRQLTYKRADGSYSAFGSSDRS-------------------GSTWLTAFVLRVFSQAKEYI-FID----PNVITQA 1029 (1436)
T ss_pred HHHHHHHHhhhccCCChhhhcCCCCc-------------------ccHHHHHHHHHHhhhccCce-Eec----HHHHHHH
Confidence 33444446778899999988762211 12346889999998874321 111 3679999
Q ss_pred HHHHHhcccCCCCcc
Q 026400 160 VKFTEDSQKLDGSWY 174 (239)
Q Consensus 160 ~~~L~~~Q~~dG~w~ 174 (239)
++||..+|.++|+|.
T Consensus 1030 ~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 1030 LNWLSQQQKENGSFK 1044 (1436)
T ss_pred HHHHHHhhccCceEe
Confidence 999999999999995
No 76
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=90.26 E-value=3.3 Score=36.76 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=78.8
Q ss_pred HHHhhhhHHhhcc--cCCcceee-ccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHH
Q 026400 78 RFYDAANFMLYIQ--SKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNN 154 (239)
Q Consensus 78 ~i~~av~~Ll~~Q--~~dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~ 154 (239)
-++.++.|+.... ..+|||.. .+.+..+ .+ ....+..++++|.+|+.+..... ..+..+
T Consensus 15 ~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~--------~~-------~~k~~~~~ar~i~~~a~a~~~~~---~~~~l~ 76 (384)
T cd00249 15 LLEDLLPFWLEAGLDREAGGFFECLDRDGQP--------FD-------TDRRLWLQARQVYCFAVAYLLGW---RPEWLE 76 (384)
T ss_pred HHHHHHHHHHhcCCCCCCCCeEEEECCCCCC--------CC-------CCCeEEEecHHHHHHHHHHHhcC---ChhHHH
Confidence 3567788887743 34689863 3333211 00 12345678999999998765432 233457
Q ss_pred HHHHHHHHHHhccc-CC-CCccCCC---C----c-chhhHHHHHHHHHHHcCcc---CCCHHHHHHHHHHHHhccC-CCC
Q 026400 155 FITNGVKFTEDSQK-LD-GSWYGTW---G----V-CFIYSTWWAISGLVAAEKT---YSNCLAIRKATDFLLNIQC-DDG 220 (239)
Q Consensus 155 ~i~ra~~~L~~~Q~-~d-G~w~g~~---g----~-~~~~~T~~al~aL~~~g~~---~~~~~~i~~a~~~L~~~Q~-~dG 220 (239)
.++++++||.+.-. ++ |+|.-.. | . ...+.-++++.||..+... ..-.+..++.+++|.+..- ++|
T Consensus 77 ~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g 156 (384)
T cd00249 77 AAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHP 156 (384)
T ss_pred HHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCC
Confidence 88999999999654 46 8885332 2 1 2366777777777764321 1124567788889988874 457
Q ss_pred ccC
Q 026400 221 GWG 223 (239)
Q Consensus 221 gWg 223 (239)
++-
T Consensus 157 ~~~ 159 (384)
T cd00249 157 GAF 159 (384)
T ss_pred ccc
Confidence 653
No 77
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=88.07 E-value=3.9 Score=43.59 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=41.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCcc-cCCCCChHHHHhhhhHHhhcccCCcceeeccCC
Q 026400 47 PVSDCSSESFVCCLHLSTMPPEI-VGEKMEPERFYDAANFMLYIQSKTGGITGWEPA 102 (239)
Q Consensus 47 ~~~d~Ta~~l~aL~~~~~~~~~~-~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~ 102 (239)
..+.=|+..++.|+.+.+..... ...+--+.+++.++.=|+++|..+|+|+.|...
T Consensus 1168 gc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~ 1224 (1621)
T COG2373 1168 GCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGN 1224 (1621)
T ss_pred cchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCC
Confidence 34567788888888876654432 122334678999999999999999999988764
No 78
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=87.91 E-value=2.4 Score=45.05 Aligned_cols=95 Identities=22% Similarity=0.198 Sum_probs=61.5
Q ss_pred ccCCCc--cchHHHHHHHHHhhhhCCCC--chhhhHHHHHHHHHHHHhcccCCCCccCCCCc---chhhHHHHHHHHHHH
Q 026400 122 IEHDYV--ECTASALKAMTLFQKLYPKH--KKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV---CFIYSTWWAISGLVA 194 (239)
Q Consensus 122 ~~~~~~--~~Ta~~l~aL~~~~~~~~~~--~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~---~~~~~T~~al~aL~~ 194 (239)
.++||. +-|++.++.|.......... .....+..++.++.=|.+.|..+|+| +.|+. ....-|++++..|..
T Consensus 1163 ~~YPygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F-~~W~~~~~~d~~ltaYa~~Fl~~ 1241 (1621)
T COG2373 1163 DDYPYGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAF-GLWGGNGSGDPWLTAYAVDFLLR 1241 (1621)
T ss_pred HhCCccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCce-eecCCCCCcchhhhHHHHHHHhh
Confidence 345543 55777666665544332222 33456778999999999999999998 57743 344567777777766
Q ss_pred c---CccCCCHHHHHHHHHHH-HhccCC
Q 026400 195 A---EKTYSNCLAIRKATDFL-LNIQCD 218 (239)
Q Consensus 195 ~---g~~~~~~~~i~~a~~~L-~~~Q~~ 218 (239)
+ |..+ +...+.++.+++ ...||+
T Consensus 1242 A~e~g~~v-p~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1242 AREQGYSV-PSDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred hhhcCcCC-CHHHHHHHHHHHHHHHhCc
Confidence 5 4444 578899986654 444543
No 79
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=86.88 E-value=2.2 Score=40.91 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcccCC-CCccC------------CCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC
Q 026400 154 NFITNGVKFTEDSQKLD-GSWYG------------TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~d-G~w~g------------~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 220 (239)
..+++.+-=|+.++.++ |+.-. .++-+..--++++++||..+|.+ +..++.++||.+.|.+||
T Consensus 256 ~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~G 331 (616)
T TIGR01577 256 SLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYH----DRVDRFFRWAMQTQSRDG 331 (616)
T ss_pred HHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcCC
Confidence 56677766666666655 65211 12223334578889999999864 678899999999999999
Q ss_pred ccCCC
Q 026400 221 GWGES 225 (239)
Q Consensus 221 gWg~~ 225 (239)
+|-..
T Consensus 332 ~~~~~ 336 (616)
T TIGR01577 332 SWQQR 336 (616)
T ss_pred CcceE
Confidence 98543
No 80
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=85.43 E-value=4.3 Score=35.75 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhccc--CCCCccCCC-------CcchhhHHHHHHHHHHHc--
Q 026400 127 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK--LDGSWYGTW-------GVCFIYSTWWAISGLVAA-- 195 (239)
Q Consensus 127 ~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~--~dG~w~g~~-------g~~~~~~T~~al~aL~~~-- 195 (239)
+-.+++.|-+++.+.. .. ..+..+.++++++||.+.-. .+|+|.-.. .....|..++++.||..+
T Consensus 20 ~~~q~R~~~~fa~a~~-~g---~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~ 95 (346)
T PF07221_consen 20 LWVQARQLYTFARAYR-LG---RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARA 95 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TT---SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHC
T ss_pred eeeeHHHHHHHHHHHh-cC---chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHH
Confidence 3467888888887654 22 23467889999999999885 558885322 134578889999998874
Q ss_pred -CccCCCHHHHHHHHHHHHhcc-CCC-CccCCC
Q 026400 196 -EKTYSNCLAIRKATDFLLNIQ-CDD-GGWGES 225 (239)
Q Consensus 196 -g~~~~~~~~i~~a~~~L~~~Q-~~d-GgWg~~ 225 (239)
+.+. ..+.+++++++|.+.- +++ |++.+.
T Consensus 96 tg~~~-~~~~A~~~~~~l~~~~~d~~~g~~~~~ 127 (346)
T PF07221_consen 96 TGDPE-ALELAEQTLEFLERRFWDPEGGGYRES 127 (346)
T ss_dssp TT-TT-HHHHHHHHHHHHHHHTEETTTTEE--E
T ss_pred hCChh-HHHHHHHHHHHHHHHhcccccCcceec
Confidence 3332 3567788999998875 554 555543
No 81
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=83.72 E-value=4.3 Score=35.86 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=50.8
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHH
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF 155 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~ 155 (239)
...+.+-|+-|+++|..+|-|-+.--+..+ .++++.++.|+.+.+.+.....++-..+..+.
T Consensus 231 ~~~l~d~v~al~r~Qde~GlW~tiLDd~~~------------------~sy~EsSaSa~faYallkgi~~G~l~~~~~~~ 292 (357)
T COG4225 231 LNVLRDLVDALIRYQDESGLWHTILDDGRP------------------GSYLESSASAGFAYALLKGINLGILDPEYAPV 292 (357)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhccCCC------------------CCchhhhHHHHHHHHHHHHHhcCCCCchhhHH
Confidence 455677789999999999999643211000 14566777777776654322122222333578
Q ss_pred HHHHHHHHHhcccCCC
Q 026400 156 ITNGVKFTEDSQKLDG 171 (239)
Q Consensus 156 i~ra~~~L~~~Q~~dG 171 (239)
++||++-|+.+-.++|
T Consensus 293 ~~kA~~aLl~~i~~~g 308 (357)
T COG4225 293 AEKALDALLGHIDEEG 308 (357)
T ss_pred HHHHHHHHHhhccccc
Confidence 9999999999998776
No 82
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=80.62 E-value=17 Score=32.19 Aligned_cols=93 Identities=19% Similarity=0.116 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhhhhCCC-C-chhhhHHHHHHHHHHHHhcccCCCCccCCC--Cc----chhhHHHHHHHHHHH---cCcc
Q 026400 130 TASALKAMTLFQKLYPK-H-KKNEVNNFITNGVKFTEDSQKLDGSWYGTW--GV----CFIYSTWWAISGLVA---AEKT 198 (239)
Q Consensus 130 Ta~~l~aL~~~~~~~~~-~-~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~--g~----~~~~~T~~al~aL~~---~g~~ 198 (239)
.+-+.++|..+-+..|. + .+..+...++.-++-|++.|.++|-|.-.- |. .-+.+|+.-+.||.. .|.-
T Consensus 206 ~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l 285 (357)
T COG4225 206 NGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGIL 285 (357)
T ss_pred cchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCC
Confidence 34455666554333332 2 445677889999999999999999995221 11 124466666677766 4431
Q ss_pred -CCCHHHHHHHHHHHHhccCCCCcc
Q 026400 199 -YSNCLAIRKATDFLLNIQCDDGGW 222 (239)
Q Consensus 199 -~~~~~~i~~a~~~L~~~Q~~dGgW 222 (239)
....++++||.+=|+.+-.++|--
T Consensus 286 ~~~~~~~~~kA~~aLl~~i~~~g~~ 310 (357)
T COG4225 286 DPEYAPVAEKALDALLGHIDEEGEV 310 (357)
T ss_pred CchhhHHHHHHHHHHHhhccccccc
Confidence 123579999999999999887743
No 83
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=78.31 E-value=7.5 Score=36.53 Aligned_cols=86 Identities=16% Similarity=0.085 Sum_probs=54.2
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccC-----------CCCc--chhhHHHHHHHHHHHc
Q 026400 129 CTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG-----------TWGV--CFIYSTWWAISGLVAA 195 (239)
Q Consensus 129 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g-----------~~g~--~~~~~T~~al~aL~~~ 195 (239)
.+++-|.+++.+.... +..++++.+++.|+.|.+.|.+||-... .|.+ ...|+....+.||.+.
T Consensus 61 ~~g~wl~a~a~~~~~~---~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~ 137 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYT---GDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDY 137 (520)
T ss_pred cHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHH
Confidence 3667777777654332 2356778899999999999999994321 2322 1246666666666653
Q ss_pred ----CccCCCHHHHHHHHHHH---HhccCC
Q 026400 196 ----EKTYSNCLAIRKATDFL---LNIQCD 218 (239)
Q Consensus 196 ----g~~~~~~~~i~~a~~~L---~~~Q~~ 218 (239)
|.+. .-+.+.|..+|+ .+...+
T Consensus 138 y~~tG~~~-~L~v~~k~ad~~~~~~~~~~~ 166 (520)
T PF07944_consen 138 YEATGNER-ALDVATKLADWVYRRLSRLGP 166 (520)
T ss_pred HHHHCcHH-HHHHHHHHHHHHHHHhccCCH
Confidence 4332 346777889999 544443
No 84
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.28 E-value=38 Score=32.82 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=39.1
Q ss_pred CcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhc-ccCCC
Q 026400 93 TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS-QKLDG 171 (239)
Q Consensus 93 dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~-Q~~dG 171 (239)
.|||-+|..+.. | .+||.|. - ....|..+.++..+... .+++.+...++.-++||.+- ..|+|
T Consensus 251 gGGF~RYStD~~--W--lvPHFEK---M------LyDnA~l~~~y~~ay~~---tgd~~y~~~a~~i~~~l~rel~sp~g 314 (667)
T COG1331 251 GGGFFRYSTDRE--W--LVPHFEK---M------LYDNALLLRAYAEAYRA---TGDDLYRRAAEGILDYLLRELYSPEG 314 (667)
T ss_pred CCceeeeecCCc--e--echhHHH---H------HHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 488866665532 2 2466553 1 22355666666655432 23345567889999997664 45788
Q ss_pred Ccc
Q 026400 172 SWY 174 (239)
Q Consensus 172 ~w~ 174 (239)
+|+
T Consensus 315 gFy 317 (667)
T COG1331 315 GFY 317 (667)
T ss_pred cee
Confidence 875
No 85
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.80 E-value=88 Score=28.07 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchH
Q 026400 52 SSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTA 131 (239)
Q Consensus 52 Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta 131 (239)
.+.+..+|..++ .+.+..+|+..++-+.+.-..| ||..-+..... -...+
T Consensus 158 ~v~v~~~L~~~G--------~~~d~~~i~~~l~~~e~~Y~Gd-GWY~DG~~~~~---------------------DYYns 207 (361)
T PF10022_consen 158 RVMVEAFLKKVG--------EEYDEERIDYDLERIEEWYLGD-GWYSDGPEFQF---------------------DYYNS 207 (361)
T ss_pred HHHHHHHHHHcC--------CCCcHHHHHHHHHHHHHHhccC-CccccCCccCC---------------------cchHH
Confidence 356666676654 4567899999999999888644 56422221110 01134
Q ss_pred HHHHHHHHh-hhhCCCCchhhhHHHHHHHHHHHHhcc---cCCCCccCCCCcchhh
Q 026400 132 SALKAMTLF-QKLYPKHKKNEVNNFITNGVKFTEDSQ---KLDGSWYGTWGVCFIY 183 (239)
Q Consensus 132 ~~l~aL~~~-~~~~~~~~~~~~~~~i~ra~~~L~~~Q---~~dG~w~g~~g~~~~~ 183 (239)
.++.-+... .+..+..+..+.+...+|+.+|+.... .+||... -+|.+-+|
T Consensus 208 ~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~-~~GRSltY 262 (361)
T PF10022_consen 208 WAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP-PFGRSLTY 262 (361)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC-CccccHHH
Confidence 444443331 112223332345667788888877655 4899864 56766555
No 86
>PLN03009 cellulase
Probab=61.67 E-value=52 Score=30.90 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=24.0
Q ss_pred hhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCcc
Q 026400 140 FQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWY 174 (239)
Q Consensus 140 ~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~ 174 (239)
+...++....+++.+.|+=+++||+++|..+|...
T Consensus 103 f~d~~~~~~~~diLdeikw~~D~llkm~~~~~~~y 137 (495)
T PLN03009 103 FGDLMPSSELRNSLVAIRWATDYLLKTVSQPNRIF 137 (495)
T ss_pred hHhhCCccccHHHHHHHHHHHHHHHHcccCcCeEE
Confidence 33333333345677889999999999987776553
No 87
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=60.55 E-value=49 Score=29.90 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHh-cccCCCCccCCC----C-----cchhhHHHHHHHHHHHc-
Q 026400 127 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTED-SQKLDGSWYGTW----G-----VCFIYSTWWAISGLVAA- 195 (239)
Q Consensus 127 ~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~-~Q~~dG~w~g~~----g-----~~~~~~T~~al~aL~~~- 195 (239)
.-++++-|-+++.++... .+ ....+++.-|++|+.+ ..+++|+|+ .+ | ....|+-++||+|+..+
T Consensus 54 ~~~~~Rqvy~fA~A~~~g--~~-~~~~~~v~hG~~y~~~~~R~~~gg~~-~~~~~dg~~~Dat~d~Y~haFallA~A~~a 129 (388)
T COG2942 54 LRVQARQVYCFAVAGLLG--WR-GPWLDAVAHGIAYLARVGRDPEGGWY-FALDNDGGPVDATKDLYGHAFALLAAAHAA 129 (388)
T ss_pred eeeehhHHHHHHHHHHhc--CC-ccHHHHHHhHHHHHHhcCcCCCCCeE-EEecCCCCcccccHhHHHHHHHHHHHHHHH
Confidence 345677777777765432 11 1246899999999995 456889884 33 1 23578999999988774
Q ss_pred --CccCCCHHHHHHHHHHHHhc
Q 026400 196 --EKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 196 --g~~~~~~~~i~~a~~~L~~~ 215 (239)
+.+. .++...++.+.|.++
T Consensus 130 ~a~~~~-a~~~~~~a~~~l~~~ 150 (388)
T COG2942 130 TAGPPR-ADELLDEALDVLERR 150 (388)
T ss_pred hcCChh-HHHHHHHHHHHHHHH
Confidence 3332 246667777666544
No 88
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=57.22 E-value=99 Score=29.88 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCccee
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGIT 97 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~ 97 (239)
+-+++.+..||..++ +.+...+..+||.+.|+++|-|.
T Consensus 287 ~RD~~~~~~AL~~~G-----------~~~~a~~~f~~l~~~~~~~~~~~ 324 (612)
T COG3387 287 PRDASYAALALLAIG-----------YKKEALRFFEFLPDVQTPNGKLY 324 (612)
T ss_pred cCcHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhCCCCcee
Confidence 357888899999876 46778889999999999998763
No 89
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=54.43 E-value=1.7e+02 Score=26.59 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=62.9
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCCC-h--hhh--hhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCC---
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAGA-P--SWI--ELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH--- 147 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~-~--~~~--~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~--- 147 (239)
.+.++=+++||++||.++|.+-.-..+.. . .|- +.++..+.-.......+..+.|+.+..+|+.....+...
T Consensus 97 lde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d~~ 176 (444)
T PF00759_consen 97 LDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFDPA 176 (444)
T ss_dssp HHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCCHH
Confidence 34455578999999999777632111110 0 000 011100000001112223445666556666543322221
Q ss_pred chhhhHHHHHHHHHHHHhcccC---C--CCccCCCCc-chhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccC
Q 026400 148 KKNEVNNFITNGVKFTEDSQKL---D--GSWYGTWGV-CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC 217 (239)
Q Consensus 148 ~~~~~~~~i~ra~~~L~~~Q~~---d--G~w~g~~g~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~ 217 (239)
-.++..++.+++-+|+.+.... + ....+.+.. .+.-.-.+|..-|..+-. +....+.+.++......
T Consensus 177 ~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De~~wAA~~Ly~aTg---~~~Y~~~a~~~~~~~~~ 249 (444)
T PF00759_consen 177 YAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDELAWAAAELYRATG---DESYLDYAKEYYDDLEA 249 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHHHHHHHHHHHHHHT----HHHHHHHHHHCCTSSB
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccHHHHHHHHHHHhcC---cHHHHHHHHHhHHhhcc
Confidence 2245667888899999887621 1 111122211 111123444334444321 25677777777755543
No 90
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=52.65 E-value=20 Score=32.49 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCC----C-------cc--hhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHH--hccC
Q 026400 153 NNFITNGVKFTEDSQKLDGSWYGTW----G-------VC--FIYSTWWAISGLVAAEKTYSNCLAIRKATDFLL--NIQC 217 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~dG~w~g~~----g-------~~--~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~--~~Q~ 217 (239)
..+.-.|.+||...|++.|||.-.- + +. ..++...|+..|.++-....++...+.|.+-|. +.-.
T Consensus 379 ~aaFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~pyk~~S 458 (594)
T KOG3760|consen 379 SAAFYAAADWLVKNQDDKGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPYKINS 458 (594)
T ss_pred HHHHHHHHHHHhhCCCCCCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCeEeec
Confidence 3567789999999999999996211 1 11 122333344444443221124566666666553 4556
Q ss_pred CCCcc
Q 026400 218 DDGGW 222 (239)
Q Consensus 218 ~dGgW 222 (239)
+|||-
T Consensus 459 ~dgGV 463 (594)
T KOG3760|consen 459 SDGGV 463 (594)
T ss_pred CCCce
Confidence 78884
No 91
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=51.32 E-value=1.6e+02 Score=25.22 Aligned_cols=81 Identities=10% Similarity=0.019 Sum_probs=43.2
Q ss_pred CCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhh
Q 026400 73 KMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV 152 (239)
Q Consensus 73 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~ 152 (239)
+...+.+.+.+++|++...++..+..|...... ........+-++.+|..+.+.. ...++
T Consensus 101 ~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~G~~hG~aGi~~~L~~l~~~t---~d~~~ 160 (321)
T cd04791 101 PALLEAAAKIAELLAEALERGDPALLWPDFDRV-----------------DHGLLHGWAGIALFLLRLYKAT---GDSRY 160 (321)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccccCCCC-----------------CCccccCcHHHHHHHHHHHHHH---CCHHH
Confidence 335667788889988765444333333111000 0122334455556665554432 22345
Q ss_pred HHHHHHHHHHHHhcccC-CCCc
Q 026400 153 NNFITNGVKFTEDSQKL-DGSW 173 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~-dG~w 173 (239)
.+.+.++++++.+...+ +++|
T Consensus 161 l~~A~~~~~~~~~~~~~~~~g~ 182 (321)
T cd04791 161 LELAEEALDKELARAVVDDGGL 182 (321)
T ss_pred HHHHHHHHHHHHHhhccCCCCc
Confidence 67788889988776543 4555
No 92
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=50.27 E-value=67 Score=29.25 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcC
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFR 30 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~ 30 (239)
.+.-.|.+||+.+|++ .|+|+...+
T Consensus 380 aaFyaAadWlV~NQd~---kGGW~~pV~ 404 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDD---KGGWSVPVE 404 (594)
T ss_pred HHHHHHHHHHhhCCCC---CCCCcchhh
Confidence 4567899999999997 499986643
No 93
>PLN02909 Endoglucanase
Probab=47.79 E-value=2.4e+02 Score=26.44 Aligned_cols=91 Identities=13% Similarity=0.063 Sum_probs=45.9
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCC-Ch--hhhhhhchhh-hhhhh-hcc--CCCccchHHHHHHHHHhhhhCCCCc
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAG-AP--SWIELLNPIE-FLDEV-IIE--HDYVECTASALKAMTLFQKLYPKHK 148 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~-~~--~~~~~~~~~e-~~~~~-~~~--~~~~~~Ta~~l~aL~~~~~~~~~~~ 148 (239)
.+.|+=+++||++||..+|++-.--.+. .+ .| ..|... ..|-. .++ ++..+.|+....+|+.....+...+
T Consensus 123 ldeikw~~D~llk~~~~~~~~y~qVg~~~~Dh~~W--~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vfk~~D 200 (486)
T PLN02909 123 RAAIRWGTDYFLKAASRKNRLYVQVGDPNLDHQCW--VRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVFRHVD 200 (486)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccC--CChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhhccCC
Confidence 4556668999999999998884211111 01 11 011000 00101 111 2333456666666665433322211
Q ss_pred ---hhhhHHHHHHHHHHHHhccc
Q 026400 149 ---KNEVNNFITNGVKFTEDSQK 168 (239)
Q Consensus 149 ---~~~~~~~i~ra~~~L~~~Q~ 168 (239)
..++.++.+++.+|..+...
T Consensus 201 ~~yA~~lL~~Ak~~y~fA~~~~g 223 (486)
T PLN02909 201 HKYSRRLLNKAKLLFKFAKAHKG 223 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 23456677888999988753
No 94
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=47.51 E-value=43 Score=29.36 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=58.6
Q ss_pred cchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhccc--CCcceeeccCCCChhhhhhhchhhhhhhhhccCCCc
Q 026400 50 DCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQS--KTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYV 127 (239)
Q Consensus 50 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~--~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 127 (239)
-.++..|-++..+.+. |.+-..+.+.++++||.+.-. .+|||...-....+ .+ .....
T Consensus 21 ~~q~R~~~~fa~a~~~-----g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~--------~~-------~~~~~ 80 (346)
T PF07221_consen 21 WVQARQLYTFARAYRL-----GRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGP--------LD-------PQKDL 80 (346)
T ss_dssp HHHHHHHHHHHHHHHT-----TSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEE--------EE---------EEH
T ss_pred eeeHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCC--------Cc-------cccch
Confidence 3567777777655442 233366778889999998774 55888532211111 00 11123
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcc-cCCCC
Q 026400 128 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-KLDGS 172 (239)
Q Consensus 128 ~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q-~~dG~ 172 (239)
...+.+|.+|+.+... ...+..+.+++++++|.+.- .++++
T Consensus 81 Y~~af~l~ala~~~~t----g~~~~~~~A~~~~~~l~~~~~d~~~g 122 (346)
T PF07221_consen 81 YDQAFALLALAEARAT----GDPEALELAEQTLEFLERRFWDPEGG 122 (346)
T ss_dssp HHHHHHHHHHHHHHCT----T-TTHHHHHHHHHHHHHHHTEETTTT
T ss_pred HHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHhcccccC
Confidence 4567888998885322 12234678889999998885 45433
No 95
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=47.10 E-value=2e+02 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHhccCCCCccCCC
Q 026400 201 NCLAIRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 201 ~~~~i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
..+.++++++|+.+.+.++|.|...
T Consensus 186 ~~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 186 LAPLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCc
Confidence 4678999999999999999988654
No 96
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=41.90 E-value=13 Score=14.16 Aligned_cols=6 Identities=67% Similarity=1.985 Sum_probs=3.9
Q ss_pred CCccCC
Q 026400 219 DGGWGE 224 (239)
Q Consensus 219 dGgWg~ 224 (239)
-|+||.
T Consensus 3 gG~Wgq 8 (8)
T PF03991_consen 3 GGGWGQ 8 (8)
T ss_pred CCcCCC
Confidence 477873
No 97
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.40 E-value=2.6e+02 Score=25.11 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCC
Q 026400 154 NFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESY 226 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~ 226 (239)
+.-++-++||.+.....-. ..+...-..++..+|...|.+. +...++.+++-+.+....||..+...
T Consensus 132 ~~k~~l~~wL~~~~~~~~~-----~nNW~lF~v~v~~~L~~~G~~~-d~~~i~~~l~~~e~~Y~GdGWY~DG~ 198 (361)
T PF10022_consen 132 EEKENLVDWLKQIRGIKPP-----DNNWLLFRVMVEAFLKKVGEEY-DEERIDYDLERIEEWYLGDGWYSDGP 198 (361)
T ss_pred HHHHHHHHHHHhcCcCCCc-----cchhHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHhccCCccccCC
Confidence 4556778899876543222 1233445667778899999887 78999999999999999898877654
No 98
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.63 E-value=3.9e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCC
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKT 93 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~d 93 (239)
+|-.+..+.||+.++.. .+.+.+-+...++.+||++....|
T Consensus 410 t~wNglmi~aLa~a~~~----~~d~~~l~~A~~~~~fi~~~l~~~ 450 (667)
T COG1331 410 TDWNGLMIAALAEAGRV----LGDPEYLEAAERAADFILDNLYVD 450 (667)
T ss_pred eccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhccc
Confidence 44568888899887653 345556778888999999999877
No 99
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.50 E-value=2.1e+02 Score=27.07 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=55.2
Q ss_pred CCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhh
Q 026400 72 EKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNE 151 (239)
Q Consensus 72 ~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~ 151 (239)
.+.-+++|++.|+-+.+.|..||--++|.....+ .+ ...++-+.....|-++.++++..+.+.. .+++
T Consensus 84 dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~p--------e~-Rw~nlr~~HelY~aghLieg~va~~qaT---Gkr~ 151 (589)
T COG3533 84 DPELEKRIDEVVEELARAQDEDGYLGGWFQADFP--------EE-RWGNLRPNHELYCAGHLIEGGVAAHQAT---GKRR 151 (589)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCcccceeeccCc--------hh-hhhccccchHHHHhHHHHhhhhHHHHhh---Ccch
Confidence 3445889999999999999999755544321111 01 1112223344567788888887765433 2344
Q ss_pred hHHHHHHHHHHHHhcccCC
Q 026400 152 VNNFITNGVKFTEDSQKLD 170 (239)
Q Consensus 152 ~~~~i~ra~~~L~~~Q~~d 170 (239)
+.+.+.|-.+|+.+.-.+.
T Consensus 152 lldV~~rlADhi~tvfgp~ 170 (589)
T COG3533 152 LLDVVCRLADHIATVFGPE 170 (589)
T ss_pred HHHHHHHHHHhhhhhcCcc
Confidence 5678888899999886543
No 100
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=38.24 E-value=1.1e+02 Score=26.92 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHhcccCCCCccC
Q 026400 150 NEVNNFITNGVKFTEDSQKLDGSWYG 175 (239)
Q Consensus 150 ~~~~~~i~ra~~~L~~~Q~~dG~w~g 175 (239)
.++.+.++++++|+.+.+.++|.|+.
T Consensus 184 ~~~~~~i~~~i~~~~~~~~~~g~w~~ 209 (343)
T cd04794 184 PSLAPLIKRSLDYLLSLQFPSGNFPS 209 (343)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 45678999999999999999999864
No 101
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=36.11 E-value=2.6e+02 Score=25.97 Aligned_cols=79 Identities=6% Similarity=-0.116 Sum_probs=41.6
Q ss_pred ChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCC-CCchhhhH
Q 026400 75 EPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYP-KHKKNEVN 153 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~-~~~~~~~~ 153 (239)
...-++++++.+...|.++|.++...+.... ... ..+.-+...+..+..+..... ..-.++.-
T Consensus 167 ~~~l~~~~l~~~~~~q~~~G~~p~~~P~~~~-~~~---------------~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~ 230 (509)
T PF05592_consen 167 DAALYRKWLRDFADSQRPDGLLPSVAPSYGG-GGF---------------GIPDWSLAWIIIPWDYYLYTGDREFLEEYY 230 (509)
T ss_dssp -HHHHHHHHHHHHGGTTTSTT-SSBSS---S-SGG---------------GBHHHHHHHHHHHHHHHHHHT-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcccCCceEEecccCC-CCC---------------CCccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3567889999999999999999753332100 000 011112223333333222211 11113345
Q ss_pred HHHHHHHHHHHhcccC
Q 026400 154 NFITNGVKFTEDSQKL 169 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~ 169 (239)
+.+++.++|+.+..++
T Consensus 231 ~~~~~~l~~~~~~~~~ 246 (509)
T PF05592_consen 231 PAMKRYLDYLERRVDD 246 (509)
T ss_dssp HHHHHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHHhCCc
Confidence 6899999999998877
No 102
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=35.21 E-value=5.8 Score=21.38 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=7.1
Q ss_pred HHHhcccCCCCcc
Q 026400 162 FTEDSQKLDGSWY 174 (239)
Q Consensus 162 ~L~~~Q~~dG~w~ 174 (239)
++-..|.+||+|.
T Consensus 4 ~I~~s~RpDGt~R 16 (27)
T PF09282_consen 4 IIPASQRPDGTWR 16 (27)
T ss_dssp EE--EE-TTS-EE
T ss_pred CcCcccCCCCCcc
Confidence 4567899999994
No 103
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=31.89 E-value=51 Score=22.64 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.1
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccC
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEP 101 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~ 101 (239)
.+-|+.||+|||+.-.+.-||..++.
T Consensus 55 teIiEnAVefiLrSMtR~tgF~E~~d 80 (88)
T PF15144_consen 55 TEIIENAVEFILRSMTRSTGFMEFED 80 (88)
T ss_pred HHHHHHHHHHHHHHhhcccCceecCC
Confidence 36799999999999999999976663
No 104
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=30.32 E-value=3.4e+02 Score=23.05 Aligned_cols=44 Identities=18% Similarity=0.063 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccC-Cccee
Q 026400 50 DCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSK-TGGIT 97 (239)
Q Consensus 50 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~-dGgw~ 97 (239)
..++-++.+|+.+.+. .+.+.+.+.+.++++++++...+ ++||.
T Consensus 139 hG~aGi~~~L~~l~~~----t~d~~~l~~A~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 139 HGWAGIALFLLRLYKA----TGDSRYLELAEEALDKELARAVVDDGGLL 183 (321)
T ss_pred cCcHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHhhccCCCCce
Confidence 3455555566655432 12334566777888888776543 57774
No 105
>PLN02308 endoglucanase
Probab=29.45 E-value=3e+02 Score=25.88 Aligned_cols=90 Identities=10% Similarity=0.066 Sum_probs=45.1
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCC--C-hhhhhhhchhhh-hhhh-hcc--CCCccchHHHHHHHHHhhhhCCCCc-
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAG--A-PSWIELLNPIEF-LDEV-IIE--HDYVECTASALKAMTLFQKLYPKHK- 148 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~--~-~~~~~~~~~~e~-~~~~-~~~--~~~~~~Ta~~l~aL~~~~~~~~~~~- 148 (239)
+.|+=+++||++||.++|++-.--.+. . ..| ..|..+. -|-. .++ .+..+.++....+|+.....+...+
T Consensus 116 deikw~~D~llkm~~~~~~vy~qVg~~~~dh~~W--~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~D~ 193 (492)
T PLN02308 116 KAVKWATDYLMKATAIPNVVYVQVGDAYSDHNCW--ERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKRDP 193 (492)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEecCCCCCccCC--CChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhccccCH
Confidence 445667899999999998874211111 0 111 0111000 0111 111 1223455555556665433322111
Q ss_pred --hhhhHHHHHHHHHHHHhccc
Q 026400 149 --KNEVNNFITNGVKFTEDSQK 168 (239)
Q Consensus 149 --~~~~~~~i~ra~~~L~~~Q~ 168 (239)
.+++..+.+++.+|+.+.+.
T Consensus 194 ~YA~~lL~~Ak~ly~fa~~~~g 215 (492)
T PLN02308 194 AYSRLLLDRAVRVFAFADKYRG 215 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 24556678889999999763
No 106
>PLN02345 endoglucanase
Probab=28.82 E-value=3.7e+02 Score=25.13 Aligned_cols=90 Identities=8% Similarity=0.048 Sum_probs=44.8
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCC-Ch--hhhhhhchhh-hhhhh-hcc--CCCccchHHHHHHHHHhhhhCCCCc
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAG-AP--SWIELLNPIE-FLDEV-IIE--HDYVECTASALKAMTLFQKLYPKHK 148 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~-~~--~~~~~~~~~e-~~~~~-~~~--~~~~~~Ta~~l~aL~~~~~~~~~~~ 148 (239)
.+.|+=+++||++||..+|++-.--.+. .+ .| .+|... ..|-. .++ .+..+.|+....+|+.....+...+
T Consensus 85 ldelkw~~Dyllk~~~~~~~~y~qVg~~~~Dh~~W--~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk~~D 162 (469)
T PLN02345 85 KDSLKWITDYLINAHPSENVLYIQVGDPKLDHKCW--ERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFKSSD 162 (469)
T ss_pred HHHHhHHHHHHHHhcCCCCeEEEEecCCCCCcccC--CChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhccCC
Confidence 3446668899999999998884211111 00 11 011000 00111 111 1233455555555655433222211
Q ss_pred ---hhhhHHHHHHHHHHHHhcc
Q 026400 149 ---KNEVNNFITNGVKFTEDSQ 167 (239)
Q Consensus 149 ---~~~~~~~i~ra~~~L~~~Q 167 (239)
..++.++.+++.+|+.+.+
T Consensus 163 ~~YA~~lL~~Ak~ly~fa~~~~ 184 (469)
T PLN02345 163 STYSDTLLKHAKQLFNFADKYR 184 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 2455677888999999875
No 107
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=28.00 E-value=1e+02 Score=17.30 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHh
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLN 214 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~ 214 (239)
-..++.||...+.. +.+|++||++
T Consensus 15 ~~~~~~AL~~~~~d------~~~A~~~L~~ 38 (38)
T cd00194 15 REEARKALRATNNN------VERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHhC
Confidence 34566777766543 6788888863
No 108
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.55 E-value=2.1e+02 Score=27.71 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCC
Q 026400 180 CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCP 230 (239)
Q Consensus 180 ~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~ 230 (239)
.+...|.+-..++...|.. ...++.++||+++++++|=..|+.....
T Consensus 535 ~w~i~t~Wl~~~~~~~g~~----~~a~~ll~~l~~~a~~~gll~EQv~~~~ 581 (612)
T COG3387 535 PWIITTLWLSEYYLALGRL----DEAKKLLEWLLAFASPLGLLPEQVDDGS 581 (612)
T ss_pred cceeehhHHHHHHHHccch----HHHHHHHHHHHHhcCCCCCcchhhcCCC
Confidence 4566788888888888864 4667789999999999999988765444
No 109
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=24.65 E-value=5.4e+02 Score=23.43 Aligned_cols=95 Identities=9% Similarity=-0.001 Sum_probs=57.0
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhh-cccCCcceeeccCCCChhhhhhhchhhhhhhhhccCC-Ccc
Q 026400 51 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLY-IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD-YVE 128 (239)
Q Consensus 51 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~-~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~ 128 (239)
+++..+-++..++..- ..+...+.+..++.|+.+ ..+++|||...-...+. ++|.+ ...
T Consensus 56 ~~~Rqvy~fA~A~~~g----~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~---------------~~Dat~d~Y 116 (388)
T COG2942 56 VQARQVYCFAVAGLLG----WRGPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGG---------------PVDATKDLY 116 (388)
T ss_pred eehhHHHHHHHHHHhc----CCccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCC---------------cccccHhHH
Confidence 5677777776655421 134478889999999984 45678999754432221 11222 224
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhccc
Q 026400 129 CTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK 168 (239)
Q Consensus 129 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~ 168 (239)
.-+.||+|++.+....+ .+.++....+.+.|...-.
T Consensus 117 ~haFallA~A~~a~a~~----~~a~~~~~~a~~~l~~~~~ 152 (388)
T COG2942 117 GHAFALLAAAHAATAGP----PRADELLDEALDVLERRFW 152 (388)
T ss_pred HHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHh
Confidence 56778888887654322 1224567777777666553
No 110
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=24.54 E-value=1e+02 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=21.1
Q ss_pred chhhhHHHHHHHHHHHHhcccCCCCc
Q 026400 148 KKNEVNNFITNGVKFTEDSQKLDGSW 173 (239)
Q Consensus 148 ~~~~~~~~i~ra~~~L~~~Q~~dG~w 173 (239)
...++.+.++=+++||+++|.++|.+
T Consensus 92 ~~~dllde~kwg~D~llkm~~~~~~~ 117 (444)
T PF00759_consen 92 GIPDLLDEAKWGLDWLLKMQDSDGTF 117 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHTBSCTTEE
T ss_pred cHHHHHHHHHHHHHHHHhccCCCCce
Confidence 34567889999999999999995544
No 111
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=24.44 E-value=6.6e+02 Score=24.98 Aligned_cols=132 Identities=8% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHH
Q 026400 53 SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTAS 132 (239)
Q Consensus 53 a~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~ 132 (239)
+-.+.+|..+.+ ..+.+...+.+.+.++.+.....++.......+ .+-
T Consensus 544 aGi~~~L~~l~~----~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G----------------------------~aG 591 (825)
T cd04792 544 GGILYALTHLGK----LLKDDRLLNLAKEILDLIDELIEKDEKLDFISG----------------------------AAG 591 (825)
T ss_pred hHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhhccccCCCEeee----------------------------cHH
Q ss_pred HHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCc--------cCCC--CcchhhHHHHHHHHHHHcCccCCCH
Q 026400 133 ALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSW--------YGTW--GVCFIYSTWWAISGLVAAEKTYSNC 202 (239)
Q Consensus 133 ~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w--------~g~~--g~~~~~~T~~al~aL~~~g~~~~~~ 202 (239)
++.+|..+.+ .....++.+.+.+++++|.+.+..+..| ...| |.. +.++++.-+........-.
T Consensus 592 ii~~Ll~l~~---~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~s---Gi~~aL~~l~~~~~d~~~~ 665 (825)
T cd04792 592 LILVLLSLYE---LFLSERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGAS---GIAWALLRLYKVTGDSRYL 665 (825)
T ss_pred HHHHHHHHHh---ccCChHHHHHHHHHHHHHHHhhhhccCCcccccccccccccccHH---HHHHHHHHHHHHcCcHHHH
Q ss_pred HHHHHHHHHHHhccCCC-Ccc
Q 026400 203 LAIRKATDFLLNIQCDD-GGW 222 (239)
Q Consensus 203 ~~i~~a~~~L~~~Q~~d-GgW 222 (239)
+.+.+++++..+...++ +.|
T Consensus 666 ~~a~~~l~~~~~~~~~~~~~w 686 (825)
T cd04792 666 KLAHKALKYERRLFSEEGWNW 686 (825)
T ss_pred HHHHHHHHHHHHhcCHhhcCC
No 112
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=23.86 E-value=5.3e+02 Score=23.06 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=23.3
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCCC
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAGA 104 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~ 104 (239)
.+.|...++|+++.|-++|-++.-+.++.
T Consensus 244 ~~dVK~sldym~~~rfpsGNyP~s~~~~~ 272 (403)
T KOG2787|consen 244 LKDVKGSLDYMIQNRFPSGNYPSSEGNKR 272 (403)
T ss_pred HHhhhhHHHHHHHccCCCCCCCcccCCCc
Confidence 46688889999999999999986665443
No 113
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=23.64 E-value=1.5e+02 Score=16.67 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=12.3
Q ss_pred HHHHHHHHcCccCCCHHHHHHHHHHH
Q 026400 187 WAISGLVAAEKTYSNCLAIRKATDFL 212 (239)
Q Consensus 187 ~al~aL~~~g~~~~~~~~i~~a~~~L 212 (239)
.+..||...+.. +++|++||
T Consensus 18 ~~~~AL~~~~~n------ve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGN------VERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTS------HHHHHHHH
T ss_pred HHHHHHHHcCCC------HHHHHHhC
Confidence 455666666543 56777776
No 114
>PLN02909 Endoglucanase
Probab=21.85 E-value=97 Score=29.03 Aligned_cols=21 Identities=29% Similarity=0.348 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhccCCCCcc
Q 026400 202 CLAIRKATDFLLNIQCDDGGW 222 (239)
Q Consensus 202 ~~~i~~a~~~L~~~Q~~dGgW 222 (239)
.+.++=+++||+++|.++|+.
T Consensus 123 ldeikw~~D~llk~~~~~~~~ 143 (486)
T PLN02909 123 RAAIRWGTDYFLKAASRKNRL 143 (486)
T ss_pred HHHHHHHHHHHHHhccCCCeE
Confidence 456777999999999998875
No 115
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=21.32 E-value=2.5e+02 Score=22.04 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCC
Q 026400 153 NNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
++.|..-++|++..|.-+|.=...+.....+ .. .+++.++.-+.||+..-...++||..
T Consensus 95 Rd~I~~Lv~~iknP~s~kG~~~~~~~~mp~~-------------~~-LsdeEL~aIAaYLl~qa~~~~~Wg~~ 153 (155)
T TIGR03046 95 RDTIQSLVAYQRDPMSYDGSEESYGCRPVPE-------------DW-MDDEEVENLAAFILRAAQKAPGWGVE 153 (155)
T ss_pred hHHHHHHHHHhhCCcccCcccccccccCCcc-------------cC-CCHHHHHHHHHHHHHhhhhcCCCCCC
Confidence 3577888889998887776421111111111 11 25789999999999988888999864
No 116
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=20.81 E-value=6.4e+02 Score=23.31 Aligned_cols=66 Identities=18% Similarity=0.074 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCC-------CcchhhHHHHHHHH---HHHcCccC---CCHHHHHHHHHHHHhccCC
Q 026400 153 NNFITNGVKFTEDSQKLDGSWYGTW-------GVCFIYSTWWAISG---LVAAEKTY---SNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~dG~w~g~~-------g~~~~~~T~~al~a---L~~~g~~~---~~~~~i~~a~~~L~~~Q~~ 218 (239)
...++|.++.+...|.++|.++... .....+...+++.. ....|... ..-+.+++.++|+.+..++
T Consensus 168 ~~l~~~~l~~~~~~q~~~G~~p~~~P~~~~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~~~ 246 (509)
T PF05592_consen 168 AALYRKWLRDFADSQRPDGLLPSVAPSYGGGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRVDD 246 (509)
T ss_dssp HHHHHHHHHHHHGGTTTSTT-SSBSS---SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHHHhhcccCCceEEecccCCCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3689999999999999999987522 11223333332211 11123210 0246889999999998877
No 117
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=20.40 E-value=4.1e+02 Score=23.99 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceee--ccCCCChhhhhhhc-hhhhhhhhhccCC
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG--WEPAGAPSWIELLN-PIEFLDEVIIEHD 125 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~--~~~~~~~~~~~~~~-~~e~~~~~~~~~~ 125 (239)
.=+++.-|.||+++... .++..+....+|.+.+..|..+..-+|+.+. +... +...+...+ +.+ . .+.+
T Consensus 33 ~wdiG~yL~al~AA~~l--glIs~~e~~~Rl~~~L~tL~~lpl~~g~lPn~~Y~t~-T~~~~~~~~~p~~----~-~gwS 104 (367)
T PF11329_consen 33 MWDIGSYLMALVAAREL--GLISREEFDQRLEKTLATLEKLPLFRGHLPNKWYNTQ-TGQPVDYGNQPGE----R-IGWS 104 (367)
T ss_pred hHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhCcccCCcCccceeecC-cCcccccCCCCCc----c-CCcc
Confidence 34568888888887653 1223334578899999999999988888753 2211 111111000 000 0 0111
Q ss_pred CccchHHHHHHHHHhhhhCCCCc
Q 026400 126 YVECTASALKAMTLFQKLYPKHK 148 (239)
Q Consensus 126 ~~~~Ta~~l~aL~~~~~~~~~~~ 148 (239)
.-..+..+.+|..+...+|.+.
T Consensus 105 -avD~GrLl~~L~il~~~~P~~a 126 (367)
T PF11329_consen 105 -AVDIGRLLIALRILKQRYPEYA 126 (367)
T ss_pred -HhhHHHHHHHHHHHHHHCchHH
Confidence 2347888999998887777653
No 118
>PLN02266 endoglucanase
Probab=20.29 E-value=7.4e+02 Score=23.44 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=45.6
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCC--Ch-hhhhhhchhhhh-hhh-hcc--CCCccchHHHHHHHHHhhhhCCCCc
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAG--AP-SWIELLNPIEFL-DEV-IIE--HDYVECTASALKAMTLFQKLYPKHK 148 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~--~~-~~~~~~~~~e~~-~~~-~~~--~~~~~~Ta~~l~aL~~~~~~~~~~~ 148 (239)
.+.|+=+++||++||.++|++-.--.+. .. .| ..|..+.. |-. .++ .+..+.++.+..+|+.....+...+
T Consensus 133 Ldelkw~~D~llk~~~~~~~vy~qVg~~~~Dh~~W--~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk~~D 210 (510)
T PLN02266 133 KDAIRWATDYLLKATAHPDTIYVQVGDANKDHACW--ERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFRKSD 210 (510)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccC--CChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhccCC
Confidence 4556668999999999988874211111 00 11 01100000 111 112 2333456555555655433222221
Q ss_pred ---hhhhHHHHHHHHHHHHhcc
Q 026400 149 ---KNEVNNFITNGVKFTEDSQ 167 (239)
Q Consensus 149 ---~~~~~~~i~ra~~~L~~~Q 167 (239)
.++..++.+++.+|..+..
T Consensus 211 ~~yA~~~L~~Ak~ly~fa~~~~ 232 (510)
T PLN02266 211 PTYSKLLVRRAIRVFQFADKYR 232 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 2455677888999998765
Done!