Query 026400
Match_columns 239
No_of_seqs 196 out of 1593
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 5.1E-41 1.7E-45 320.0 20.1 232 2-235 408-642 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 2.9E-36 9.9E-41 283.9 16.6 214 2-234 330-545 (631)
3 2sqc_A Squalene-hopene cyclase 99.9 1.4E-26 4.9E-31 217.9 17.6 184 2-228 397-597 (631)
4 1r76_A Pectate lyase; A-helica 99.9 4.5E-26 1.5E-30 200.5 12.6 202 4-224 82-335 (408)
5 1gxm_A Pectate lyase; mechanis 99.9 3.4E-25 1.1E-29 190.0 5.6 187 8-217 36-251 (332)
6 2h6f_B Protein farnesyltransfe 99.9 5E-24 1.7E-28 191.7 11.4 169 5-228 75-245 (437)
7 1w6k_A Lanosterol synthase; cy 99.9 4.9E-23 1.7E-27 196.3 15.6 192 2-226 480-691 (732)
8 3dss_B Geranylgeranyl transfer 99.9 1.2E-21 4.2E-26 170.7 12.2 174 5-235 68-242 (331)
9 2h6f_B Protein farnesyltransfe 99.9 7.9E-22 2.7E-26 177.4 11.1 179 3-235 121-301 (437)
10 3dss_B Geranylgeranyl transfer 99.9 3.8E-21 1.3E-25 167.6 12.3 170 5-231 116-287 (331)
11 3q7a_B Farnesyltransferase bet 99.8 3.2E-21 1.1E-25 174.5 12.0 131 73-224 105-236 (520)
12 1n4q_B Geranyltransferase type 99.8 3.8E-21 1.3E-25 170.0 9.6 136 79-227 69-215 (377)
13 1qqf_A Protein (complement C3D 99.8 1.9E-18 6.6E-23 147.1 16.9 185 3-225 38-260 (277)
14 2wy7_A Complement C3D fragment 99.8 7.2E-18 2.5E-22 145.8 17.0 185 3-225 54-276 (310)
15 1n4q_B Geranyltransferase type 99.8 3.2E-18 1.1E-22 151.2 13.9 188 5-235 69-273 (377)
16 1hzf_A Complement factor C4A; 99.8 2E-17 6.8E-22 146.3 17.3 188 3-225 91-346 (367)
17 3q7a_B Farnesyltransferase bet 99.6 1.9E-15 6.7E-20 136.8 13.9 184 4-234 110-326 (520)
18 1qqf_A Protein (complement C3D 99.6 2.1E-15 7.1E-20 128.3 11.9 116 76-218 37-173 (277)
19 1hzf_A Complement factor C4A; 99.6 2.6E-16 8.9E-21 139.1 5.9 151 33-215 50-226 (367)
20 2wy7_A Complement C3D fragment 99.6 3.1E-15 1.1E-19 129.2 11.7 115 77-218 54-189 (310)
21 1r76_A Pectate lyase; A-helica 99.5 3.5E-15 1.2E-19 131.4 5.8 153 2-174 174-334 (408)
22 2hr0_B Complement C3 alpha' ch 99.5 3E-13 1E-17 132.1 15.8 183 3-224 299-520 (915)
23 1gxm_A Pectate lyase; mechanis 99.4 1.4E-13 4.7E-18 118.2 7.6 130 83-223 37-189 (332)
24 4acq_A Alpha-2-macroglobulin; 99.4 2.4E-12 8.1E-17 130.7 14.4 182 4-225 984-1228(1451)
25 2pn5_A TEP1R, thioester-contai 99.4 5.5E-12 1.9E-16 127.5 15.5 180 3-225 872-1088(1325)
26 4acq_A Alpha-2-macroglobulin; 99.3 2.9E-11 9.9E-16 122.8 12.5 116 77-215 983-1108(1451)
27 2pn5_A TEP1R, thioester-contai 99.2 2.8E-11 9.7E-16 122.3 10.3 124 77-225 872-1007(1325)
28 2hr0_B Complement C3 alpha' ch 99.2 1.2E-10 4.1E-15 113.8 11.3 116 77-218 299-434 (915)
29 2bb6_A TCII, TC II, transcobal 99.1 3.5E-10 1.2E-14 100.1 11.5 130 51-224 138-270 (414)
30 2pmv_A Gastric intrinsic facto 99.1 2.2E-10 7.5E-15 100.9 9.7 124 53-224 118-246 (399)
31 3dra_B Geranylgeranyltransfera 99.0 3.4E-09 1.2E-13 93.6 12.3 125 78-232 192-347 (390)
32 3dra_B Geranylgeranyltransfera 98.9 3.3E-09 1.1E-13 93.7 9.3 132 76-227 52-215 (390)
33 4fxk_B Complement C4-A alpha c 98.8 1.3E-07 4.5E-12 90.7 17.8 187 4-225 369-623 (767)
34 2bb6_A TCII, TC II, transcobal 98.8 8E-09 2.7E-13 91.5 7.4 106 47-196 176-285 (414)
35 2b39_A C3; thioester, immune d 98.5 2.1E-06 7.3E-11 88.6 17.0 185 4-225 1047-1268(1661)
36 3prx_B Cobra venom factor; imm 98.5 1.2E-08 3.9E-13 104.7 0.0 186 5-226 1032-1251(1642)
37 2pmv_A Gastric intrinsic facto 98.5 1.2E-07 4.2E-12 83.5 5.1 106 48-197 151-262 (399)
38 3cu7_A Complement C5; Mg domai 98.4 7.5E-06 2.6E-10 84.7 17.0 70 5-97 1049-1119(1676)
39 4fxk_B Complement C4-A alpha c 98.4 2.9E-06 1E-10 81.3 12.6 113 78-216 369-504 (767)
40 2b39_A C3; thioester, immune d 98.3 6.8E-06 2.3E-10 84.9 13.2 113 78-216 1047-1179(1661)
41 3cu7_A Complement C5; Mg domai 98.2 9.1E-06 3.1E-10 84.0 11.9 111 79-215 1049-1178(1676)
42 3prx_B Cobra venom factor; imm 98.0 7.6E-07 2.6E-11 91.4 0.0 114 77-215 1030-1162(1642)
43 3k11_A Putative glycosyl hydro 96.7 0.022 7.5E-07 51.1 12.3 153 49-224 144-315 (445)
44 3pya_A ENT-copalyl diphosphate 96.6 0.0032 1.1E-07 59.7 7.0 58 156-216 52-112 (727)
45 3p5p_A Taxadiene synthase; cla 96.6 0.0035 1.2E-07 59.9 6.9 58 156-216 55-115 (764)
46 3sdr_A Alpha-bisabolene syntha 96.6 0.0036 1.2E-07 60.2 6.9 59 155-216 102-163 (817)
47 3s9v_A Abietadiene synthase, c 96.6 0.0032 1.1E-07 60.3 6.5 59 155-216 75-136 (785)
48 3pya_A ENT-copalyl diphosphate 96.0 0.0073 2.5E-07 57.2 5.5 61 79-167 52-112 (727)
49 3s9v_A Abietadiene synthase, c 95.9 0.0087 3E-07 57.3 5.7 63 77-167 74-136 (785)
50 3p5p_A Taxadiene synthase; cla 95.8 0.009 3.1E-07 57.0 5.5 62 78-167 54-115 (764)
51 3k11_A Putative glycosyl hydro 95.8 0.12 4.2E-06 46.2 12.5 95 130-224 268-373 (445)
52 3sdr_A Alpha-bisabolene syntha 95.8 0.011 3.6E-07 57.0 5.8 63 77-167 101-163 (817)
53 3pmm_A Putative cytoplasmic pr 95.4 0.094 3.2E-06 46.0 9.8 124 52-195 235-377 (382)
54 2gz6_A N-acetyl-D-glucosamine 94.4 0.15 5E-06 44.3 8.5 126 79-222 17-158 (388)
55 1nc5_A Hypothetical protein YT 93.3 0.59 2E-05 40.5 10.3 92 130-221 215-323 (373)
56 1ulv_A Glucodextranase; GH fam 93.2 0.52 1.8E-05 46.5 10.6 114 49-194 331-449 (1020)
57 3pmm_A Putative cytoplasmic pr 93.1 0.74 2.5E-05 40.2 10.6 97 130-226 235-343 (382)
58 1lf6_A Glucoamylase; (alpha/al 92.6 0.34 1.2E-05 45.6 8.2 112 49-194 342-457 (684)
59 3gt5_A N-acetylglucosamine 2-e 92.4 0.71 2.4E-05 40.4 9.6 130 76-223 12-157 (402)
60 1nc5_A Hypothetical protein YT 92.2 0.37 1.3E-05 41.8 7.4 103 53-172 216-323 (373)
61 1fp3_A N-acyl-D-glucosamine 2- 91.2 1.1 3.9E-05 38.8 9.5 128 79-222 19-166 (402)
62 2gz6_A N-acetyl-D-glucosamine 91.1 1.2 4.1E-05 38.4 9.5 153 49-222 52-216 (388)
63 2vn4_A Glucoamylase; hydrolase 90.9 0.87 3E-05 42.2 8.7 119 49-194 52-198 (599)
64 2fba_A Glucoamylase Glu1; (alp 89.6 0.95 3.3E-05 40.9 7.7 162 8-194 29-229 (492)
65 1wgn_A UBAP1, ubiquitin associ 87.0 0.76 2.6E-05 29.1 3.7 30 185-220 33-62 (63)
66 1gai_A Glucoamylase-471; hydro 82.2 4.8 0.00016 36.1 8.2 121 49-194 53-197 (472)
67 2dna_A Unnamed protein product 78.0 2.8 9.4E-05 27.1 3.8 28 187-220 36-63 (67)
68 3h7l_A Endoglucanase; dehydrog 76.8 14 0.00047 34.1 9.5 83 130-219 252-342 (586)
69 2ahf_A Unsaturated glucuronyl 76.6 36 0.0012 29.3 11.9 85 3-95 171-262 (377)
70 3gt5_A N-acetylglucosamine 2-e 76.3 7.2 0.00025 33.8 7.4 101 50-173 52-156 (402)
71 2zbl_A Putative isomerase; N-a 74.8 15 0.00052 32.0 9.1 128 78-225 16-157 (421)
72 2zzr_A Unsaturated glucuronyl 73.7 43 0.0015 29.1 11.6 168 3-195 196-389 (397)
73 2ahf_A Unsaturated glucuronyl 71.3 14 0.00049 32.0 7.9 132 72-221 106-262 (377)
74 2zzr_A Unsaturated glucuronyl 68.0 61 0.0021 28.2 11.4 164 2-195 136-317 (397)
75 2vn4_A Glucoamylase; hydrolase 67.8 15 0.00053 33.8 7.7 88 128-225 53-181 (599)
76 1vej_A Riken cDNA 4931431F19; 66.9 7.3 0.00025 25.6 3.9 28 187-220 46-73 (74)
77 1ulv_A Glucodextranase; GH fam 65.6 27 0.00093 34.4 9.4 74 150-227 280-373 (1020)
78 3k7x_A LIN0763 protein; Q92DQ0 65.1 40 0.0014 28.7 9.4 146 49-221 91-254 (349)
79 1lf6_A Glucoamylase; (alpha/al 64.8 11 0.00036 35.4 6.1 72 152-227 294-383 (684)
80 2cpw_A CBL-interacting protein 64.1 9.4 0.00032 24.2 4.0 29 185-218 33-61 (64)
81 2zbl_A Putative isomerase; N-a 61.3 39 0.0013 29.3 8.9 142 51-217 52-209 (421)
82 1vg5_A RSGI RUH-014, rhomboid 61.0 10 0.00034 24.8 3.7 29 185-219 43-71 (73)
83 1wiv_A UBP14, ubiquitin-specif 60.6 12 0.0004 24.4 4.0 28 185-218 43-70 (73)
84 1wji_A Tudor domain containing 60.0 11 0.00038 23.7 3.8 30 185-220 23-52 (63)
85 2crn_A Ubash3A protein; compac 59.2 9.9 0.00034 24.1 3.4 29 185-218 23-51 (64)
86 2knz_A Ubiquilin-4; cytoplasm, 58.2 11 0.00037 22.8 3.3 26 185-216 26-51 (53)
87 3gzk_A Cellulase; fold from GH 57.9 55 0.0019 29.7 9.4 89 76-168 191-286 (537)
88 3e6u_A LANC-like protein 1; al 57.0 21 0.00071 31.1 6.3 40 133-175 236-275 (411)
89 1fp3_A N-acyl-D-glucosamine 2- 56.0 51 0.0018 28.1 8.7 107 49-174 55-167 (402)
90 3h7l_A Endoglucanase; dehydrog 55.9 54 0.0018 30.2 9.0 45 130-174 164-214 (586)
91 2dah_A Ubiquilin-3; UBA domain 55.7 13 0.00045 22.6 3.4 26 187-218 26-51 (54)
92 1whc_A RSGI RUH-027, UBA/UBX 3 46.9 21 0.0007 22.5 3.4 29 185-218 23-51 (64)
93 1veg_A NEDD8 ultimate buster-1 44.8 23 0.00079 23.7 3.5 27 185-217 43-69 (83)
94 2ekk_A UBA domain from E3 ubiq 42.8 28 0.00095 20.2 3.3 23 186-215 24-46 (47)
95 2dag_A Ubiquitin carboxyl-term 42.4 25 0.00085 22.8 3.4 29 185-218 23-51 (74)
96 2bwb_A Ubiquitin-like protein 42.1 22 0.00074 20.8 2.7 22 187-214 24-45 (46)
97 1vek_A UBP14, ubiquitin-specif 40.9 30 0.001 23.1 3.7 28 186-218 44-71 (84)
98 2dak_A Ubiquitin carboxyl-term 40.6 22 0.00075 22.2 2.8 28 185-218 23-50 (63)
99 2dai_A Ubadc1, ubiquitin assoc 40.3 33 0.0011 22.8 3.8 27 186-218 44-70 (83)
100 1wr1_B Ubiquitin-like protein 39.4 27 0.00091 21.6 3.0 23 187-215 34-56 (58)
101 2jy5_A Ubiquilin-1; UBA, alter 39.1 23 0.00077 21.3 2.6 24 186-215 28-51 (52)
102 2okx_A Rhamnosidase B; alpha b 38.8 1.1E+02 0.0038 29.6 8.8 80 76-173 594-674 (956)
103 2g3q_A Protein YBL047C; endocy 37.8 33 0.0011 19.3 3.1 24 186-215 19-42 (43)
104 4fnv_A Heparinase III protein, 36.2 2.7E+02 0.0093 26.0 11.3 84 134-220 266-361 (702)
105 1ify_A HHR23A, UV excision rep 32.7 42 0.0014 19.7 3.0 25 185-215 22-46 (49)
106 1cb8_A Protein (chondroitinase 31.1 71 0.0024 29.8 5.7 28 147-174 78-105 (678)
107 3e6u_A LANC-like protein 1; al 29.6 1.9E+02 0.0065 24.9 8.0 24 202-225 253-276 (411)
108 3rrs_A Cellobiose phosphorylas 29.5 1.8E+02 0.0061 27.8 8.3 97 51-171 368-479 (822)
109 2dkl_A Trinucleotide repeat co 28.5 65 0.0022 21.5 3.7 27 186-218 36-62 (85)
110 2cos_A Serine/threonine protei 28.2 85 0.0029 19.1 3.8 28 187-219 25-52 (54)
111 3eu8_A Putative glucoamylase; 27.6 75 0.0026 28.0 4.9 105 51-167 66-170 (430)
112 1ks8_A Endo-B-1,4-glucanase; c 27.2 3.1E+02 0.011 23.8 11.7 91 76-167 93-192 (433)
113 1clc_A Endoglucanase CELD; EC: 26.4 3.8E+02 0.013 24.6 11.2 87 76-168 235-330 (639)
114 3eu8_A Putative glucoamylase; 25.2 1.5E+02 0.0053 26.0 6.4 87 128-215 65-169 (430)
115 3a0o_A Oligo alginate lyase; a 23.8 80 0.0027 29.7 4.7 67 153-221 335-410 (776)
116 3s88_J GP2, GP2, envelope glyc 22.7 73 0.0025 23.6 3.3 37 49-91 90-126 (167)
117 1q02_A Sequestosome 1; helical 21.6 66 0.0023 19.4 2.4 23 75-97 6-29 (52)
118 2cwb_A Chimera of immunoglobul 20.3 1E+02 0.0034 21.6 3.5 24 186-215 82-105 (108)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=5.1e-41 Score=319.96 Aligned_cols=232 Identities=38% Similarity=0.782 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
.+.+++|++||+++|++++ +|+|...||+..+|||+|++.++++|++||||.+|+||..+.+.+++ .+..++.++|.+
T Consensus 408 ~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~-~g~~~~~~~i~~ 485 (732)
T 1w6k_A 408 SSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCD 485 (732)
T ss_dssp HHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTT-CCSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhccccc-ccchhhHHHHHH
Confidence 5689999999999999764 57888899999999999999888999999999999999998653321 134567899999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||+++|++||||+.|+.+++..+++.+++.|.|++.+++++++++|+.+|.+|..++...|.++..+++++|+||++
T Consensus 486 av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~ 565 (732)
T 1w6k_A 486 AVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLE 565 (732)
T ss_dssp HHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHH
Confidence 99999999999999999999888889999999998988899999999999999999999877777776677889999999
Q ss_pred HHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCH---HHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 162 FTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNC---LAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~---~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
||++.|++||+|.+.||.+++|+|++++.||..+|....+. +.++||++||+++|++||||++.+.|+.++.|.
T Consensus 566 yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~ 642 (732)
T 1w6k_A 566 FCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYV 642 (732)
T ss_dssp HHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCC
T ss_pred HHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccC
Confidence 99999999999999999999999999999999999764223 799999999999999999999987665554443
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=2.9e-36 Score=283.88 Aligned_cols=214 Identities=24% Similarity=0.373 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD 81 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~ 81 (239)
.+.++||++||++.|+.+ +|+|..++++.++|||+|++.++++|++||||.+++||..++. ++ ..+..+.+.+
T Consensus 330 ~~~~~ka~~~L~~~q~~~--~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~-~~----~~~~~~~l~~ 402 (631)
T 2sqc_A 330 HDRLVKAGEWLLDRQITV--PGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRL-PD----ERRRRDAMTK 402 (631)
T ss_dssp CHHHHHHHHHHHHTCCCS--CCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCC-SC----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC--CCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCC-Cc----cchhHHHHHH
Confidence 468999999999999953 6999999999999999999999999999999999999998764 21 1124678999
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhh--hhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDE--VIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNG 159 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra 159 (239)
+++||+++|++||||+.|+.+++..+++.++ |.+ .++|++++++|+.+|++|..++. +.+ .+.++||
T Consensus 403 a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~----F~~~~~~~d~~~vd~Ta~vl~aL~~~g~--~~~-----~~~i~ra 471 (631)
T 2sqc_A 403 GFRWIVGMQSSNGGWGAYDVDNTSDLPNHIP----FSDFGEVTDPPSEDVTAHVLECFGSFGY--DDA-----WKVIRRA 471 (631)
T ss_dssp HHHHHHHTCCTTSCBCSSCSSCCCSGGGGST----TCSSSCSSCCCBHHHHHHHHHHHHTTTC--CTT-----SHHHHHH
T ss_pred HHHHHHhhcCCCCCCCccCCCCccccccccc----cccCCcccCCCCchHHHHHHHHHHhcCC--Ccc-----HHHHHHH
Confidence 9999999999999999888777666666665 332 36688899999999999998863 222 4789999
Q ss_pred HHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCcc
Q 026400 160 VKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLH 234 (239)
Q Consensus 160 ~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y 234 (239)
++||++.|++||+|++.|+.+++|.|+.++.+|..+|... +.+.++|+++||+++|++||||++.+.++.++.|
T Consensus 472 i~~L~~~Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~~-~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~ 545 (631)
T 2sqc_A 472 VEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDT-REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAY 545 (631)
T ss_dssp HHHHHHHCCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCT-TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGG
T ss_pred HHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHhCcCCCCcCCcccccccccc
Confidence 9999999999999999999999999999999999998765 5789999999999999999999998777665444
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.94 E-value=1.4e-26 Score=217.92 Aligned_cols=184 Identities=21% Similarity=0.342 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCC---CCCcccccCCCC--CCCCCcchHHHHHHHHHhcCCCCcccCCCCCh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHI---SKGGWTFSDKDH--GLPVSDCSSESFVCCLHLSTMPPEIVGEKMEP 76 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~---~~ggw~~~~~~~--~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~ 76 (239)
.+.+.++++||+++|+.+ |+|+.+.... ..++++|.+.+. .++++|||+.+|++|..++. +...
T Consensus 397 ~~~l~~a~~wLls~Q~~d---Ggf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~--------~~~~ 465 (631)
T 2sqc_A 397 RDAMTKGFRWIVGMQSSN---GGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGY--------DDAW 465 (631)
T ss_dssp HHHHHHHHHHHHHTCCTT---SCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTC--------CTTS
T ss_pred HHHHHHHHHHHHhhcCCC---CCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCC--------CccH
Confidence 357899999999999985 8887764432 236788876432 24789999999999998753 2356
Q ss_pred HHHHhhhhHHhhcccCCccee-eccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGIT-GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF 155 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~ 155 (239)
+.++++++||+++|++||||. .+.. .++.+|+.++.+|..++... ..+.
T Consensus 466 ~~i~rai~~L~~~Q~~DGsw~g~wg~-----------------------~~~y~Ta~~l~aL~~~g~~~-------~~~~ 515 (631)
T 2sqc_A 466 KVIRRAVEYLKREQKPDGSWFGRWGV-----------------------NYLYGTGAVVSALKAVGIDT-------REPY 515 (631)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCCSSBS-----------------------SHHHHHHHHHHHHHHTTCCT-------TSHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCC-----------------------CchHHHHHHHHHHHHhCCcc-------cHHH
Confidence 889999999999999999993 2221 13457999999999886421 1478
Q ss_pred HHHHHHHHHhcccCCCCccCC-----------CCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCC
Q 026400 156 ITNGVKFTEDSQKLDGSWYGT-----------WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 156 i~ra~~~L~~~Q~~dG~w~g~-----------~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
++|+++||++.|++||+|... ++.+.++.|++||.+|..+|.. +.+.++|+++||+++|++||||++
T Consensus 516 i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~--~~~~i~rav~wL~~~Q~~dGgw~~ 593 (631)
T 2sqc_A 516 IQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRA--ESEAARRGVQYLVETQRPDGGWDE 593 (631)
T ss_dssp HHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHCCTTSCCCC
T ss_pred HHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHhccCCCCCcCC
Confidence 999999999999999999432 2456678899999999999876 358899999999999999999998
Q ss_pred CCCc
Q 026400 225 SYLS 228 (239)
Q Consensus 225 ~~~s 228 (239)
...+
T Consensus 594 ~~~t 597 (631)
T 2sqc_A 594 PYYT 597 (631)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7643
No 4
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.93 E-value=4.5e-26 Score=200.52 Aligned_cols=202 Identities=12% Similarity=0.078 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCC-----------Cccc----------cc---CCCCCCCCCcchHHHHHHH
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISK-----------GGWT----------FS---DKDHGLPVSDCSSESFVCC 59 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~-----------ggw~----------~~---~~~~~~~~~d~Ta~~l~aL 59 (239)
..++..+.|+.-|.++ |+|......... .+|. .. ..+..++|.|+|+.+|++|
T Consensus 82 ~A~~iAd~ll~~Q~~~---GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL 158 (408)
T 1r76_A 82 AARHVADVIVSFQTPA---GGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFL 158 (408)
T ss_dssp HHHHHHHHHHHHCCTT---SCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHccccC---CCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHH
Confidence 4678899999999984 999764221111 1111 11 1234678999999999999
Q ss_pred HHhcCC-CCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHH
Q 026400 60 LHLSTM-PPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMT 138 (239)
Q Consensus 60 ~~~~~~-~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~ 138 (239)
..+... .. ...+.+.+++.||++||+++|++||||+.|.+++ ..+++.|++.+ ++|++||+.|.
T Consensus 159 ~rv~~~~t~--~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~IpFnD------------Dvt~rvle~L~ 223 (408)
T 1r76_A 159 AQVVSQLAP--EEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAITYND------------DALVHVAELLS 223 (408)
T ss_dssp HHHHHHSCG--GGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEECGG------------GHHHHHHHHHH
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCCcCc------------HHHHHHHHHHH
Confidence 987542 10 0123478999999999999999999999999887 45667666222 67999999999
Q ss_pred HhhhhCC------CCchhhhHHHHHHHHHHHHhcccC-CCCccCCCCcchhhHHHH-------------------HHHHH
Q 026400 139 LFQKLYP------KHKKNEVNNFITNGVKFTEDSQKL-DGSWYGTWGVCFIYSTWW-------------------AISGL 192 (239)
Q Consensus 139 ~~~~~~~------~~~~~~~~~~i~ra~~~L~~~Q~~-dG~w~g~~g~~~~~~T~~-------------------al~aL 192 (239)
.++...+ ...+.+..++++||++||++.|.+ ||+|+ .||++|.|+|.. +|..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~L 302 (408)
T 1r76_A 224 DIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFL 302 (408)
T ss_dssp HHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHH
T ss_pred HHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHH
Confidence 8765211 111234568999999999999999 99998 999888776554 45556
Q ss_pred HHcCccC-CCHHHHHHHHHHHHhccCCCCccCC
Q 026400 193 VAAEKTY-SNCLAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 193 ~~~g~~~-~~~~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
+....+. ...++|++|++||.++|++||+|-.
T Consensus 303 M~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 303 MEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhcCCCceee
Confidence 6554321 0134899999999999999999973
No 5
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.91 E-value=3.4e-25 Score=190.01 Aligned_cols=187 Identities=14% Similarity=0.170 Sum_probs=137.6
Q ss_pred HHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHh
Q 026400 8 AHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFML 87 (239)
Q Consensus 8 a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll 87 (239)
..+-|+.-|.++ |+|....-....+.-. ...+..++|.|+|+.+|++|..+...+ +.+.+.+++.||++||+
T Consensus 36 ~Ad~~l~~Q~~~---GGW~kn~d~~~~~~~~-~~~~~~t~DnddTa~vl~~Larv~~~~----~~~~y~~Ai~Rgl~wlL 107 (332)
T 1gxm_A 36 RADVVLSYQQNN---GGWPKNLDYNSVGNGG-GGNESGTIDNGATITEMVFLAEVYKSG----GNTKYRDAVRKAANFLV 107 (332)
T ss_dssp GHHHHHHTCCTT---SCCCSCCCTTTCCCCC-CCCSCEECGGGTTHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCC---CCCCcceecccccccC-CCCCCCCccCccHHHHHHHHHHHhccc----cchHHHHHHHHHHHHHH
Confidence 467889999984 9998643211111000 112345689999999999999865421 12347899999999999
Q ss_pred hcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCc--------hhhhHHHHHHH
Q 026400 88 YIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHK--------KNEVNNFITNG 159 (239)
Q Consensus 88 ~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~--------~~~~~~~i~ra 159 (239)
++|.+||||+.|.+++ ..+++.|++.+ ++|++||+.|..++...+.+. ..+..++++||
T Consensus 108 ~mQ~~nGGWpqFdpd~-~~Yl~~IpFnD------------DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rg 174 (332)
T 1gxm_A 108 NSQYSTGALPQFYPLK-GGYSDHATFND------------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKG 174 (332)
T ss_dssp HHCCTTSCCBSEESCC-SGGGGSEECGG------------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHH
T ss_pred hccCCCCCccccCCCc-ccccccCCcch------------HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHH
Confidence 9999999999999876 45667666322 679999999999864222110 13456899999
Q ss_pred HHHHHhcccCCCCccCCCCcchhhHHHH----------HHHHHHHc-------CccCCCHH----HHHHHHHHHHhccC
Q 026400 160 VKFTEDSQKLDGSWYGTWGVCFIYSTWW----------AISGLVAA-------EKTYSNCL----AIRKATDFLLNIQC 217 (239)
Q Consensus 160 ~~~L~~~Q~~dG~w~g~~g~~~~~~T~~----------al~aL~~~-------g~~~~~~~----~i~~a~~~L~~~Q~ 217 (239)
++||++.|.++|+|.+.||+.|.|.|.. +|.++..+ +.+. ++ +|++|++||.++|+
T Consensus 175 id~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~--~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 175 TDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ--TAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp HHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC--CHHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999998887 55554444 2332 23 79999999999999
No 6
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.90 E-value=5e-24 Score=191.66 Aligned_cols=169 Identities=16% Similarity=0.097 Sum_probs=127.7
Q ss_pred HHHHHHHHHhc-cCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh
Q 026400 5 LMKAHDFLKNS-QVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA 83 (239)
Q Consensus 5 l~~a~~~l~~~-Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av 83 (239)
.++.++||+++ |+. +|+|..+..++ .| .+-.+|.+|..++ ..+..+.++++|
T Consensus 75 ~~~hi~~l~~~lq~~---~gg~~a~D~~r---~~-------------l~y~~l~aL~lLg--------~~~~~~~~~r~v 127 (437)
T 2h6f_B 75 REKHFHYLKRGLRQL---TDAYECLDASR---PW-------------LCYWILHSLELLD--------EPIPQIVATDVC 127 (437)
T ss_dssp HHHHHHHHHHHTTEE---CGGGGGGTTCH---HH-------------HHHHHHHHHHHTT--------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---CCCcccccCCC---cc-------------HHHHHHHHHHHhC--------CCCCHHHHHHHH
Confidence 47899999999 876 46766553321 01 1223455665554 234678899999
Q ss_pred hHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHH
Q 026400 84 NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFT 163 (239)
Q Consensus 84 ~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L 163 (239)
+||+++|++||||+.++.. .+++..|..+|.+|..++.... . . ...++|+++||
T Consensus 128 ~~l~s~Q~~dGGf~g~~~~---------------------~~~i~~T~~Al~aL~~lg~~~~-~--~--~i~i~kav~~L 181 (437)
T 2h6f_B 128 QFLELCQSPEGGFGGGPGQ---------------------YPHLAPTYAAVNALCIIGTEEA-Y--D--IINREKLLQYL 181 (437)
T ss_dssp HHHHHHBCTTSSBBSSTTC---------------------CBCHHHHHHHHHHHHHHCCHHH-H--T--TSCHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCccCC---------------------CcchhHHHHHHHHHHHhCCccc-c--c--chHHHHHHHHH
Confidence 9999999999999865532 1345679999999999875310 0 0 12378999999
Q ss_pred HhcccCCCCccCC-CCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCc
Q 026400 164 EDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLS 228 (239)
Q Consensus 164 ~~~Q~~dG~w~g~-~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s 228 (239)
++.|++||||.+. ||..+++.|..|+.+|...|.. +.+.++|+++||+++|++|||||+....
T Consensus 182 ~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~pg~ 245 (437)
T 2h6f_B 182 YSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGVPGM 245 (437)
T ss_dssp HTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSSTTS
T ss_pred HHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCCCCC
Confidence 9999999999886 8888888888888888888764 4678999999999999999999997643
No 7
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.90 E-value=4.9e-23 Score=196.29 Aligned_cols=192 Identities=22% Similarity=0.292 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcc----c----ccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCC
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGW----T----FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEK 73 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw----~----~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~ 73 (239)
.+.+.++++||+++|+.| |+|..+.++.. ..| + |.+....++.+++|+.+|++|..++...+.. +.+
T Consensus 480 ~~~i~~av~wLls~Q~~D---Ggw~a~~~~~~-~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~-~~~ 554 (732)
T 1w6k_A 480 RERLCDAVAVLLNMRNPD---GGFATYETKRG-GHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEH-RAA 554 (732)
T ss_dssp HHHHHHHHHHHHTTCCTT---SCBCSSSCCCS-CGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTS-SHH
T ss_pred HHHHHHHHHHHHHhcCCC---CCEEeecCCCc-hHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccc-cch
Confidence 357899999999999985 99987755421 112 1 2222223356789999999999886421110 001
Q ss_pred CChHHHHhhhhHHhhcccCCcceee-ccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhh
Q 026400 74 MEPERFYDAANFMLYIQSKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV 152 (239)
Q Consensus 74 ~~~~~i~~av~~Ll~~Q~~dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~ 152 (239)
...+.|++|++||+++|++||||.. |.. .+...|+.++.+|..++..... .++
T Consensus 555 ~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-----------------------~~~Y~T~~al~AL~~aG~~~~~---~~~ 608 (732)
T 1w6k_A 555 EIRETLTQGLEFCRRQQRADGSWEGSWGV-----------------------CFTYGTWFGLEAFACMGQTYRD---GTA 608 (732)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCCCCSSBS-----------------------SHHHHHHHHHHHHHHTTCCCBT---TBC
T ss_pred hhHHHHHHHHHHHHhhcCCCCCccCcCCC-----------------------ccchHHHHHHHHHHHhCCcccc---cch
Confidence 1357899999999999999999952 211 1123588899999998753211 112
Q ss_pred HHHHHHHHHHHHhcccCCCCccCCC-----------CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCc
Q 026400 153 NNFITNGVKFTEDSQKLDGSWYGTW-----------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGG 221 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~dG~w~g~~-----------g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGg 221 (239)
.+.++||++||++.|++||+|.... +.+.+..|++||++|..++.. +.+.++++++||+++|++|||
T Consensus 609 ~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Gg 686 (732)
T 1w6k_A 609 CAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGD 686 (732)
T ss_dssp CHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSC
T ss_pred hHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCC
Confidence 3689999999999999999996431 134567899999999999865 578999999999999999999
Q ss_pred cCCCC
Q 026400 222 WGESY 226 (239)
Q Consensus 222 Wg~~~ 226 (239)
|.+..
T Consensus 687 f~~~~ 691 (732)
T 1w6k_A 687 WPQEN 691 (732)
T ss_dssp CCCCS
T ss_pred ccCCc
Confidence 99755
No 8
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.86 E-value=1.2e-21 Score=170.69 Aligned_cols=174 Identities=13% Similarity=0.057 Sum_probs=130.9
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
.+++++||.+.|+++ |+|.. +++ ..++..+|..++.+|..++.. ....++++++
T Consensus 68 r~~~i~~l~s~Q~~d---GGF~g--------~~g------~~~~l~~Ty~Al~~L~~l~~~---------~~id~~k~~~ 121 (331)
T 3dss_B 68 KEEILVFIKSCQHEC---GGVSA--------SIG------HDPHLLYTLSAVQILTLYDSI---------HVINVDKVVA 121 (331)
T ss_dssp HHHHHHHHHHTBCTT---SCBBS--------STT------SCBCHHHHHHHHHHHHHTTCG---------GGSCHHHHHH
T ss_pred HHHHHHHHhhhcCCC---CCcCC--------CCC------CCccHHHHHHHHHHHHHcCCc---------cHHHHHHHHH
Confidence 368999999999874 66652 121 236788999999999887531 2234789999
Q ss_pred HHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 85 FMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 85 ~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
||+++|++||||....... .++..|..++.+|..++... ...++|+++||+
T Consensus 122 fL~~~Q~~DGsf~~~~~ge---------------------~d~~~ty~Al~~L~llg~~~--------~~~~~k~v~~L~ 172 (331)
T 3dss_B 122 YVQSLQKEDGSFAGDIWGE---------------------IDTRFSFCAVATLALLGKLD--------AINVEKAIEFVL 172 (331)
T ss_dssp HHHHTBCTTSCBBSSTTCC---------------------BCHHHHHHHHHHHHHHTCGG--------GSCHHHHHHHHH
T ss_pred HHhccCCCCCCEecccCCC---------------------CchHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHH
Confidence 9999999999997321110 12334667888888876532 235889999999
Q ss_pred hcccCCCCccCCCC-cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400 165 DSQKLDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 165 ~~Q~~dG~w~g~~g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~ 235 (239)
+.|++||+|.+..+ ..+...|++|+.+|..++... ...++++++||+++|++||||+.......+..|+
T Consensus 173 s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys 242 (331)
T 3dss_B 173 SCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLH--QVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYS 242 (331)
T ss_dssp TTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHH
T ss_pred HhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhH
Confidence 99999999987764 456778999999999988652 3558999999999999999999887766655554
No 9
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.86 E-value=7.9e-22 Score=177.38 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA 82 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~a 82 (239)
+.++++++||+++|+++ |+|..+. | ..++..+|..+|.+|..++... ......++++
T Consensus 121 ~~~~r~v~~l~s~Q~~d---GGf~g~~-------~-------~~~~i~~T~~Al~aL~~lg~~~------~~~~i~i~ka 177 (437)
T 2h6f_B 121 IVATDVCQFLELCQSPE---GGFGGGP-------G-------QYPHLAPTYAAVNALCIIGTEE------AYDIINREKL 177 (437)
T ss_dssp HHHHHHHHHHHHHBCTT---SSBBSST-------T-------CCBCHHHHHHHHHHHHHHCCHH------HHTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCC---CCcCCcc-------C-------CCcchhHHHHHHHHHHHhCCcc------cccchHHHHH
Confidence 46789999999999985 7776431 2 1246789999999999986410 0112348899
Q ss_pred hhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHH
Q 026400 83 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKF 162 (239)
Q Consensus 83 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~ 162 (239)
++||+++|++||||....... .++..|..++.+|..++... .+.++|+++|
T Consensus 178 v~~L~s~Q~~DGsf~~~~~Ge---------------------~d~~~ty~A~~~L~llg~~~--------~~~v~k~~~~ 228 (437)
T 2h6f_B 178 LQYLYSLKQPDGSFLMHVGGE---------------------VDVRSAYCAASVASLTNIIT--------PDLFEGTAEW 228 (437)
T ss_dssp HHHHHTTBCTTSCBBSSTTCC---------------------BSHHHHHHHHHHHHHTTCCC--------TTTTTTHHHH
T ss_pred HHHHHHhCCCCCCeeecCCCC---------------------ccchhHHHHHHHHHHhCCCC--------hHHHHHHHHH
Confidence 999999999999997321111 12334666777777776421 2457899999
Q ss_pred HHhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccC-CCCccCCCCCcCCCCccc
Q 026400 163 TEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC-DDGGWGESYLSCPNKLHM 235 (239)
Q Consensus 163 L~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~-~dGgWg~~~~s~~~~~y~ 235 (239)
|++.|++||+|.+.- +.++...|++||.+|..+|... ...++++++||+++|. ++|||.....--.+..|+
T Consensus 229 L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~--~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYS 301 (437)
T 2h6f_B 229 IARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRER--SLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYS 301 (437)
T ss_dssp HHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGG--GSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHH
T ss_pred HHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCC--cccHHHHHHHHHhcCCCCCCCccCCCCCccchHHH
Confidence 999999999997654 3566778999999999998763 4578999999999999 799998876555555553
No 10
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.85 E-value=3.8e-21 Score=167.63 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=126.5
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
++++++||.+.|..| |+|... -|+ -.++--|-.++.+|..++. .....++++++
T Consensus 116 ~~k~~~fL~~~Q~~D---Gsf~~~-------~~g-------e~d~~~ty~Al~~L~llg~---------~~~~~~~k~v~ 169 (331)
T 3dss_B 116 VDKVVAYVQSLQKED---GSFAGD-------IWG-------EIDTRFSFCAVATLALLGK---------LDAINVEKAIE 169 (331)
T ss_dssp HHHHHHHHHHTBCTT---SCBBSS-------TTC-------CBCHHHHHHHHHHHHHHTC---------GGGSCHHHHHH
T ss_pred HHHHHHHHhccCCCC---CCEecc-------cCC-------CCchHHHHHHHHHHHhcCC---------CCHHHHHHHHH
Confidence 689999999999985 777621 121 1244556667777776653 13356889999
Q ss_pred HHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHH
Q 026400 85 FMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTE 164 (239)
Q Consensus 85 ~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~ 164 (239)
||+++|++||||+...... +....|..++.+|..++...+ ..++++++||.
T Consensus 170 ~L~s~Q~~dGGfg~~pg~e---------------------sh~~~T~~al~aL~llg~~~~--------~~~~~~~~wL~ 220 (331)
T 3dss_B 170 FVLSCMNFDGGFGCRPGSE---------------------SHAGQIYCCTGFLAITSQLHQ--------VNSDLLGWWLC 220 (331)
T ss_dssp HHHTTBCTTSCBCSSTTCC---------------------CCHHHHHHHHHHHHHTTCGGG--------SCHHHHHHHHH
T ss_pred HHHHhCcCCCCcCCCCCCC---------------------CcHHHHHHHHHHHHhccccch--------hhHHHHHHHHH
Confidence 9999999999997432211 233458889999998875422 23789999999
Q ss_pred hcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCC-CccCCCCCcCCC
Q 026400 165 DSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD-GGWGESYLSCPN 231 (239)
Q Consensus 165 ~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~d-GgWg~~~~s~~~ 231 (239)
+.|.+||+|.++. ....+.-|.+++.+|...|.. +...++++++||+++|++| |||+.......+
T Consensus 221 ~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~--~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d 287 (331)
T 3dss_B 221 ERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL--HWIDREKLRSFILACQDEETGGFADRPGDMVD 287 (331)
T ss_dssp TTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCB
T ss_pred HhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCc--chhhHHHHHHHHHHhcCCCCCCcCCCCCCCCC
Confidence 9999999998886 344566688999999998865 2456899999999999998 999998755444
No 11
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.85 E-value=3.2e-21 Score=174.54 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=113.2
Q ss_pred CCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhh
Q 026400 73 KMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEV 152 (239)
Q Consensus 73 ~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~ 152 (239)
+++.....++|+||+++|++||||+.++.. .+.+++.+|..+|.+|..++..+|+++..++
T Consensus 105 ~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~-------------------~~~~hla~TysAV~aL~ilg~~~p~~~~~~I 165 (520)
T 3q7a_B 105 ALDQGTKDRVVSTLLHFLSPKGGFGGGPAN-------------------SQIPHLLPTYASVCSLAIAGNDSSTGGWKDL 165 (520)
T ss_dssp CCCHHHHHHHHHHHHTTBCTTSSBCSSCTT-------------------TSCCCHHHHHHHHHHHHHHCBSSTTSBHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCCCCCCCCCCC-------------------CCCCcHHHHHHHHHHHHHhCccccchhhhhh
Confidence 456678889999999999999999865421 1235677899999999999987777776777
Q ss_pred HHHHHHHHHHHHhcccCCCCccCC-CCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCC
Q 026400 153 NNFITNGVKFTEDSQKLDGSWYGT-WGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 153 ~~~i~ra~~~L~~~Q~~dG~w~g~-~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
+..++++++||++.|++||+|.+. ||.++++.|..|+.+|...+.. +.+.++++++||++||+.|||||+
T Consensus 166 d~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 166 AAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII--TPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp HHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred hhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccC
Confidence 667899999999999999999985 8999999999999999988874 578999999999999999999999
No 12
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.84 E-value=3.8e-21 Score=169.95 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=109.7
Q ss_pred HHhhhhHHhhccc---------CCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCch
Q 026400 79 FYDAANFMLYIQS---------KTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKK 149 (239)
Q Consensus 79 i~~av~~Ll~~Q~---------~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~ 149 (239)
..++|+||+++|+ ++|||+.++....+. .+..++. ...++|++++.+|..+|.+|..++...+..
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~-~d~~~~~---~~~~~d~~~v~~T~~Al~~L~~lg~~~~~i-- 142 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPF-NPSKNPG---TAHPYDSGHIAMTYTGLSCLIILGDDLSRV-- 142 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCC-CSSCSCC---CCCTTCCCCHHHHHHHHHHHHHTTCCSTTS--
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCCh-hhhcccc---ccccCCCCCHHHHHHHHHHHHHhCcccchh--
Confidence 6799999999999 689999887653332 1222222 245778899999999999999997544322
Q ss_pred hhhHHHHHHHHHHHHhcccCCCCccC--CCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCC
Q 026400 150 NEVNNFITNGVKFTEDSQKLDGSWYG--TWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYL 227 (239)
Q Consensus 150 ~~~~~~i~ra~~~L~~~Q~~dG~w~g--~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~ 227 (239)
..+++++||++.|++||+|.+ .||..+++.|..|+.+|...+.. +.+.++++++||+++|+.|||||+.+.
T Consensus 143 -----d~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~--~~~~v~ka~~fL~scQn~DGGfGe~p~ 215 (377)
T 1n4q_B 143 -----DKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW--SGMDMKKAISYIRRSMSYDNGLAQGAG 215 (377)
T ss_dssp -----CHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTSSBBSSTT
T ss_pred -----hHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 237899999999999999998 58988888888898888888863 467899999999999999999999764
No 13
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.80 E-value=1.9e-18 Score=147.10 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA 82 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~a 82 (239)
+.|++++++|+++|+.| |+|+.+.. ..++...||.++.+|..+.+. ..++.+.|.++
T Consensus 38 ~~i~~g~~~~l~~q~~d---Ggf~~f~~--------------~~~s~wlTa~v~~~l~~a~~~------~~v~~~~i~~a 94 (277)
T 1qqf_A 38 ELIKKGYTQQLAFKQPI---SAYAAFNN--------------RPPSTWLTAYVSRVFSLAANL------IAIDSQVLCGA 94 (277)
T ss_dssp HHHHHHHHHHHTTBCTT---SCBCSSTT--------------SCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---CCccccCC--------------CCccHHHHHHHHHHHHHHhhc------CCCCHHHHHHH
Confidence 46889999999999985 88775421 125678999999999998752 14678899999
Q ss_pred hhHHhh-cccCCcceeeccCCCChhhhhhhchhhhhhhhhcc--CCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHH
Q 026400 83 ANFMLY-IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE--HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNG 159 (239)
Q Consensus 83 v~~Ll~-~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra 159 (239)
++||++ .|++||+|.....-.. .++.+.. .+ .+.+..|+.++.+|...+...+. ......+.|+||
T Consensus 95 ~~~L~~~~Q~~dG~f~~~~~~~~---------~~~~g~~-~~~~~~~~~lta~vl~aL~~~~~~~~~-~~~~~~~~i~~A 163 (277)
T 1qqf_A 95 VKWLILEKQKPDGVFQEDGPVIH---------QEMIGGF-RNTKEADVSLTAFVLIALQEARDICEG-QVNSLPGSINKA 163 (277)
T ss_dssp HHHHHHHHBCTTSCBCCSSCCSC---------GGGGGGG-GSCTTHHHHHHHHHHHHHHHHHHHHTT-TCTTHHHHHHHH
T ss_pred HHHHHHhccCCCCCccCCccccc---------hhhcCCC-CCCccCccchHHHHHHHHHhhhhcccc-CCCchHHHHHHH
Confidence 999996 9999999963221100 0000000 00 11234589999999887542100 001235789999
Q ss_pred HHHHHhcccC---------------------------------CCCccCCCCcc--hhhHHHHHHHHHHHcCccCCCHHH
Q 026400 160 VKFTEDSQKL---------------------------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCLA 204 (239)
Q Consensus 160 ~~~L~~~Q~~---------------------------------dG~w~g~~g~~--~~~~T~~al~aL~~~g~~~~~~~~ 204 (239)
++||.+.|++ +|.|....+.+ .+..|++||++|...+.. +.
T Consensus 164 ~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~ 239 (277)
T 1qqf_A 164 GEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF----DS 239 (277)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT----TS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh----hh
Confidence 9999998764 44332333322 567899999999998653 46
Q ss_pred HHHHHHHHHhccCCCCccCCC
Q 026400 205 IRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 205 i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
+.++++||+++|+++|||+..
T Consensus 240 ~~~~v~wL~~qq~~~Ggw~sT 260 (277)
T 1qqf_A 240 VPPVVRWLNDERYYGGGYGST 260 (277)
T ss_dssp HHHHHHHHHHCCCCTTSTTCH
T ss_pred HHHHHHHHHHccCCCCCeecc
Confidence 889999999999999999864
No 14
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.78 E-value=7.2e-18 Score=145.83 Aligned_cols=185 Identities=14% Similarity=0.143 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA 82 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~a 82 (239)
+.|++++++++++|+.| |+|+.|.. ..++...||.++.+|..+.+. ..++.+.|.++
T Consensus 54 ~~i~~g~~~~l~~q~~d---Ggf~~f~~--------------~~~s~wlTa~v~~~l~~a~~~------~~v~~~~i~~a 110 (310)
T 2wy7_A 54 ELIKKGYTQQLAFRQPS---SAFAAFVK--------------RAPSTWLTAYVVKVFSLAVNL------IAIDSQVLCGA 110 (310)
T ss_dssp HHHHHHHHHHHTTBCTT---SCBCSSTT--------------SCCCHHHHHHHHHHHHHHTTT------SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---CCcccCCC--------------CCccHHHHHHHHHHHHHHHhc------CCCCHHHHHHH
Confidence 46889999999999985 78775421 125678999999999998752 13678899999
Q ss_pred hhHHhh-cccCCcceeeccCCCChhhhhhhchhhhhhhhhcc--CCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHH
Q 026400 83 ANFMLY-IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE--HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNG 159 (239)
Q Consensus 83 v~~Ll~-~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra 159 (239)
++||++ .|++||+|......... ++.+.. .+ .+.+..|+.++.+|...+..... ......+.|+||
T Consensus 111 ~~~L~~~~Q~~dGsf~~~~~~~~~---------~~~g~~-~~~~~~~~~~ta~vl~aL~~~~~~~~~-~~~~~~~~i~~A 179 (310)
T 2wy7_A 111 VKWLILEKQKPDGVFQEDAPVIHQ---------EMIGGL-RNNNEKDMALTAFVLISLQEAKDICEE-QVNSLPGSITKA 179 (310)
T ss_dssp HHHHHHHHBCTTSCBCCSSCCSCG---------GGGGGG-TTCSCHHHHHHHHHHHHHHHHHHHHTT-TCTTHHHHHHHH
T ss_pred HHHHHHhhcCCCCccccCCCccCH---------hhcCCc-ccccccccchHHHHHHHHHhccccccc-CCcchHHHHHHH
Confidence 999996 99999999632211100 000000 00 11234589999999887542000 001235789999
Q ss_pred HHHHHhcccC---------------------------------CCCccCCCCcc--hhhHHHHHHHHHHHcCccCCCHHH
Q 026400 160 VKFTEDSQKL---------------------------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCLA 204 (239)
Q Consensus 160 ~~~L~~~Q~~---------------------------------dG~w~g~~g~~--~~~~T~~al~aL~~~g~~~~~~~~ 204 (239)
++||.+.|++ +|.|....+.+ .+..|++||++|...+.. +.
T Consensus 180 ~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~ 255 (310)
T 2wy7_A 180 GDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DF 255 (310)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT----TT
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh----hh
Confidence 9999998774 33332333322 567899999999998653 46
Q ss_pred HHHHHHHHHhccCCCCccCCC
Q 026400 205 IRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 205 i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
+.++++||+++|+++|||...
T Consensus 256 ~~~~v~wL~~qq~~~Ggw~sT 276 (310)
T 2wy7_A 256 VPPVVRWLNEQRYYGGGYGST 276 (310)
T ss_dssp HHHHHHHHHHTTCCCCSTTCH
T ss_pred HHHHHHHHHHccCCCCCeecc
Confidence 889999999999999999853
No 15
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.77 E-value=3.2e-18 Score=151.21 Aligned_cols=188 Identities=11% Similarity=0.003 Sum_probs=127.7
Q ss_pred HHHHHHHHHhccCCCC------CCCCcchhcCCCCCCcccccC-------CCCCCCCCcchHHHHHHHHHhcCCCCcccC
Q 026400 5 LMKAHDFLKNSQVTDN------PQGDFRSMFRHISKGGWTFSD-------KDHGLPVSDCSSESFVCCLHLSTMPPEIVG 71 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~------~~g~~~~~~~~~~~ggw~~~~-------~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~ 71 (239)
.+++++||.++|+..+ ..|+|+.+..+.. +|.+ ....++.+.+|..+|.+|..++...
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~----p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~----- 139 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGI----PFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDL----- 139 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCC----CCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCS-----
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCC----ChhhhccccccccCCCCCHHHHHHHHHHHHHhCccc-----
Confidence 5789999999999210 1366665543311 1211 1122477899999999999886421
Q ss_pred CCCChHHHHhhhhHHhhcccCCcceeec-cCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchh
Q 026400 72 EKMEPERFYDAANFMLYIQSKTGGITGW-EPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKN 150 (239)
Q Consensus 72 ~~~~~~~i~~av~~Ll~~Q~~dGgw~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~ 150 (239)
.....+++++||.++|++||+|... .... .++..|-.++.+|..++...
T Consensus 140 ---~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe---------------------~DirftY~Al~~l~llg~~~------ 189 (377)
T 1n4q_B 140 ---SRVDKEACLAGLRALQLEDGSFCAVPEGSE---------------------NDMRFVYCASCICYMLNNWS------ 189 (377)
T ss_dssp ---TTSCHHHHHHHHHHHBCTTSCBCSSTTCCC---------------------CBHHHHHHHHHHHHHTTCGG------
T ss_pred ---chhhHHHHHHHHHHhcCCCCCeeeccCCCc---------------------chhHHHHHHHHHHHHhcCCC------
Confidence 1223478999999999999999632 1110 12333555677777766421
Q ss_pred hhHHHHHHHHHHHHhcccCCCCccCCC-CcchhhHHHHHHHHHHHcCccCC--CHHHHHHHHHHHHhccCCCCccCCCCC
Q 026400 151 EVNNFITNGVKFTEDSQKLDGSWYGTW-GVCFIYSTWWAISGLVAAEKTYS--NCLAIRKATDFLLNIQCDDGGWGESYL 227 (239)
Q Consensus 151 ~~~~~i~ra~~~L~~~Q~~dG~w~g~~-g~~~~~~T~~al~aL~~~g~~~~--~~~~i~~a~~~L~~~Q~~dGgWg~~~~ 227 (239)
...++|+++||++.|+.||||...- +.++.-.|++|+.+|...+.... +...++|+++||+++| +||+...+.
T Consensus 190 --~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~n 265 (377)
T 1n4q_B 190 --GMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPN 265 (377)
T ss_dssp --GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTT
T ss_pred --hHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCC
Confidence 2458999999999999999996554 45566678888888888775420 1127899999999999 899987766
Q ss_pred cCCCCccc
Q 026400 228 SCPNKLHM 235 (239)
Q Consensus 228 s~~~~~y~ 235 (239)
-..+..|.
T Consensus 266 K~~D~CYS 273 (377)
T 1n4q_B 266 KPVDTCYS 273 (377)
T ss_dssp SCCCTTHH
T ss_pred cchhHHHH
Confidence 65666554
No 16
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.76 E-value=2e-17 Score=146.29 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA 82 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~a 82 (239)
+.|++|++||+++|+.| |+|+.+.. ...+...|+.++.+|..+++. ..++...|.++
T Consensus 91 ~~i~~g~~~ll~~Q~~d---Ggf~~~~~--------------~~~~~~lTa~v~~~l~~a~~~------~~v~~~~i~~a 147 (367)
T 1hzf_A 91 DLIQKGYMRIQQFRKAD---GSYAAWLS--------------RDSSTWLTAFVLKVLSLAQEQ------VGGSPEKLQET 147 (367)
T ss_dssp HHHHHHHHHHHTTBCTT---SCBCSSTT--------------SCCCHHHHHHHHHHHHHHGGG------TCCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCC---CCeeccCC--------------CCCcHHHHHHHHHHHHHHHHH------hCCCHHHHHHH
Confidence 46899999999999985 77765421 113467899999999998752 24568899999
Q ss_pred hhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCC-Cc---hhhhHHHHHH
Q 026400 83 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPK-HK---KNEVNNFITN 158 (239)
Q Consensus 83 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~-~~---~~~~~~~i~r 158 (239)
++||++.|++||+|.....-... ++-+....+++.+..|+.+|.+|...+...+. .. +....+.|+|
T Consensus 148 ~~~L~~~Q~~dG~~~~~~~~~~~---------~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~r 218 (367)
T 1hzf_A 148 SNWLLSQQQADGSFQDPCPVLDR---------SMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISK 218 (367)
T ss_dssp HHHHGGGBCTTSCBCCSSCCSCG---------GGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCcccccccccc---------cccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHH
Confidence 99999999999999632111100 00000000122345799999999876542221 00 0234578999
Q ss_pred HHHHHHhc--cc------------------------------------CCCC---ccCC--------------------C
Q 026400 159 GVKFTEDS--QK------------------------------------LDGS---WYGT--------------------W 177 (239)
Q Consensus 159 a~~~L~~~--Q~------------------------------------~dG~---w~g~--------------------~ 177 (239)
|++||.+. ++ .+|. |... |
T Consensus 219 a~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~ 298 (367)
T 1hzf_A 219 ASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPM 298 (367)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC-----------------------
T ss_pred HHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCccccccccccccccccccc
Confidence 99999766 21 1222 4210 1
Q ss_pred --Cc-chhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCC
Q 026400 178 --GV-CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 178 --g~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
+. ..+..|++||++|...+.+ .+.+.++++||+++||.+|||+..
T Consensus 299 ~~~~s~~vE~TAyaLLall~~~~~---~~~~~~iv~WL~~qrn~~Ggw~sT 346 (367)
T 1hzf_A 299 PQAPALWIETTAYALLHLLLHEGK---AEMADQASAWLTRQGSFQGGFRST 346 (367)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTCS---SHHHHHHHHHHHHHTTSTTCSCSH
T ss_pred CCCccchhHHHHHHHHHHHhccCc---hhhhHHHHHHHHhCcCCCCCcccH
Confidence 11 1567899999999876543 478899999999999999999864
No 17
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.64 E-value=1.9e-15 Score=136.84 Aligned_cols=184 Identities=13% Similarity=0.042 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHH--HHh
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPER--FYD 81 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~--i~~ 81 (239)
..+++++||+++|+++ |+|+.+ + .....+.+.+|-.+|.+|..++...|.. ....-. +.+
T Consensus 110 ~~~~~I~~Ils~Q~~d---GGFgg~---------p---~~~~~~hla~TysAV~aL~ilg~~~p~~---~~~~Id~~r~k 171 (520)
T 3q7a_B 110 TKDRVVSTLLHFLSPK---GGFGGG---------P---ANSQIPHLLPTYASVCSLAIAGNDSSTG---GWKDLAAARQS 171 (520)
T ss_dssp HHHHHHHHHHTTBCTT---SSBCSS---------C---TTTSCCCHHHHHHHHHHHHHHCBSSTTS---BHHHHHHTHHH
T ss_pred HHHHHHHHHHHHcCCC---CCCCCC---------C---CCCCCCcHHHHHHHHHHHHHhCccccch---hhhhhhhHHHH
Confidence 4678999999999974 665432 1 1124578999999999999998643310 111112 667
Q ss_pred hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+++||.++|++||+|...... ..++..|-.++.+|..++... ...++++++
T Consensus 172 ~v~fL~slQ~~DGSF~g~~wG---------------------e~Dir~TY~Al~~L~lLg~~~--------~~~v~kav~ 222 (520)
T 3q7a_B 172 IYEFFMRCKRPDGGFVVCEGG---------------------EVDVRGTYCLLVVATLLDIIT--------PELLHNVDK 222 (520)
T ss_dssp HHHHHHHHBCTTSCBBSSTTC---------------------CBCHHHHHHHHHHHHHHTCCC--------HHHHTTHHH
T ss_pred HHHHHHHHhCCCCCEecCCCC---------------------CchHHHHHHHHHHHHHcCCCC--------hHHHHHHHH
Confidence 899999999999999531111 012334666777777776421 367899999
Q ss_pred HHHhcccCCCCccCC------------------------CCcchhhHHHHHHHHHHHcCccC----CCHHHHHHHHHHHH
Q 026400 162 FTEDSQKLDGSWYGT------------------------WGVCFIYSTWWAISGLVAAEKTY----SNCLAIRKATDFLL 213 (239)
Q Consensus 162 ~L~~~Q~~dG~w~g~------------------------~g~~~~~~T~~al~aL~~~g~~~----~~~~~i~~a~~~L~ 213 (239)
||++.|+.||||... .+..+.-.|.+||.+|.-.+.-. .....+++.++||.
T Consensus 223 fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~ 302 (520)
T 3q7a_B 223 FVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTV 302 (520)
T ss_dssp HHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHH
T ss_pred HHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHH
Confidence 999999999999651 23333334666766666555421 01235789999999
Q ss_pred hccC---CCCccCCCCCcCCCCcc
Q 026400 214 NIQC---DDGGWGESYLSCPNKLH 234 (239)
Q Consensus 214 ~~Q~---~dGgWg~~~~s~~~~~y 234 (239)
.+|. ++|||.....--.+..|
T Consensus 303 ~RQ~~~~e~GGF~GR~NKlvD~CY 326 (520)
T 3q7a_B 303 LQQGEPIEGGGFRGRTNKLVDGCY 326 (520)
T ss_dssp HTBCCGGGTTCBBSSTTSCBCTTH
T ss_pred HhCCcccCCCcccCCCCCCCchhh
Confidence 9997 47999876654455444
No 18
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.62 E-value=2.1e-15 Score=128.28 Aligned_cols=116 Identities=17% Similarity=0.088 Sum_probs=91.4
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHH
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF 155 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~ 155 (239)
.+.|++++.+++++|++||||+.|+... +++..|++|+.+|..+.+..+. . .+.
T Consensus 37 ~~~i~~g~~~~l~~q~~dGgf~~f~~~~---------------------~s~wlTa~v~~~l~~a~~~~~v-~----~~~ 90 (277)
T 1qqf_A 37 LELIKKGYTQQLAFKQPISAYAAFNNRP---------------------PSTWLTAYVSRVFSLAANLIAI-D----SQV 90 (277)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSSTTSC---------------------CCHHHHHHHHHHHHHHTTTSCC-C----HHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCC---------------------ccHHHHHHHHHHHHHHhhcCCC-C----HHH
Confidence 4568889999999999999999887432 2344699999999998754321 1 468
Q ss_pred HHHHHHHHHh-cccCCCCccCCCCcc--------------hhhHHHHHHHHHHHcCc------cCCCHHHHHHHHHHHHh
Q 026400 156 ITNGVKFTED-SQKLDGSWYGTWGVC--------------FIYSTWWAISGLVAAEK------TYSNCLAIRKATDFLLN 214 (239)
Q Consensus 156 i~ra~~~L~~-~Q~~dG~w~g~~g~~--------------~~~~T~~al~aL~~~g~------~~~~~~~i~~a~~~L~~ 214 (239)
++++++||++ .|++||+|.+.|++. .++.|++++.+|...+. +. .++.|++|++||.+
T Consensus 91 i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~-~~~~i~~A~~~L~~ 169 (277)
T 1qqf_A 91 LCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNS-LPGSINKAGEYLEA 169 (277)
T ss_dssp HHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCc-hHHHHHHHHHHHHH
Confidence 9999999996 999999998776432 25569999999988743 32 46899999999999
Q ss_pred ccCC
Q 026400 215 IQCD 218 (239)
Q Consensus 215 ~Q~~ 218 (239)
+|++
T Consensus 170 ~~~~ 173 (277)
T 1qqf_A 170 SYLN 173 (277)
T ss_dssp HHTT
T ss_pred Hhcc
Confidence 9875
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.62 E-value=2.6e-16 Score=139.12 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=104.4
Q ss_pred CCCcccccCCCCCCCCCcchHHHHHHHHHhcC---CCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhh
Q 026400 33 SKGGWTFSDKDHGLPVSDCSSESFVCCLHLST---MPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIE 109 (239)
Q Consensus 33 ~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~---~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~ 109 (239)
.++||.+......+|++ .++..|..... .++.. +......|.+++++|+++|++||||+.|+.+++.
T Consensus 50 ~P~Gc~EQ~~s~~~P~~----~v~~~l~~~~~w~~~~~~~--~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~---- 119 (367)
T 1hzf_A 50 LPRGCGEQTMIYLAPTL----AASRYLDKTEQWSTLPPET--KDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSS---- 119 (367)
T ss_dssp CCCSSHHHHHHHHHHHH----HHHHHHHHTTCSTTSCTTH--HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCC----
T ss_pred CCCCCHHHHHHHHHHHH----HHHHHHHHhhhcccCChhH--HHHHHHHHHHHHHHHHhccCCCCCeeccCCCCCc----
Confidence 46777776544444432 44444444322 11100 0112457999999999999999999988764322
Q ss_pred hhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccCCCCc----------
Q 026400 110 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGV---------- 179 (239)
Q Consensus 110 ~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~---------- 179 (239)
...|++|+.+|..+++.+... ...++||++||++.|++||+|.+.+..
T Consensus 120 -----------------~~lTa~v~~~l~~a~~~~~v~-----~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~ 177 (367)
T 1hzf_A 120 -----------------TWLTAFVLKVLSLAQEQVGGS-----PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLV 177 (367)
T ss_dssp -----------------HHHHHHHHHHHHHHGGGTCCC-----HHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGS
T ss_pred -----------------HHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhhccCCCcccccccccccccCCCC
Confidence 346899999999987653221 478999999999999999999876532
Q ss_pred ---chhhHHHHHHHHHHHcCccCC----------CHHHHHHHHHHHHhc
Q 026400 180 ---CFIYSTWWAISGLVAAEKTYS----------NCLAIRKATDFLLNI 215 (239)
Q Consensus 180 ---~~~~~T~~al~aL~~~g~~~~----------~~~~i~~a~~~L~~~ 215 (239)
..++.|++++.+|...+.... ..+.|+||++||.++
T Consensus 178 ~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 178 GNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 236789999999988764210 246899999999876
No 20
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.61 E-value=3.1e-15 Score=129.24 Aligned_cols=115 Identities=20% Similarity=0.123 Sum_probs=91.0
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
+.|++++.+++++|++||||+.|+... +++..|+.|+.+|..+.+.... . .+.+
T Consensus 54 ~~i~~g~~~~l~~q~~dGgf~~f~~~~---------------------~s~wlTa~v~~~l~~a~~~~~v-~----~~~i 107 (310)
T 2wy7_A 54 ELIKKGYTQQLAFRQPSSAFAAFVKRA---------------------PSTWLTAYVVKVFSLAVNLIAI-D----SQVL 107 (310)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSSTTSC---------------------CCHHHHHHHHHHHHHHTTTSCC-C----HHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCC---------------------ccHHHHHHHHHHHHHHHhcCCC-C----HHHH
Confidence 568889999999999999999887432 2344699999999998754321 1 4689
Q ss_pred HHHHHHHHh-cccCCCCccCCCCcc--------------hhhHHHHHHHHHHHcCc------cCCCHHHHHHHHHHHHhc
Q 026400 157 TNGVKFTED-SQKLDGSWYGTWGVC--------------FIYSTWWAISGLVAAEK------TYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 157 ~ra~~~L~~-~Q~~dG~w~g~~g~~--------------~~~~T~~al~aL~~~g~------~~~~~~~i~~a~~~L~~~ 215 (239)
+++++||.+ .|++||+|.+.|++. .++.|++++.+|...+. +. .++.|++|++||.++
T Consensus 108 ~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~-~~~~i~~A~~~L~~~ 186 (310)
T 2wy7_A 108 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNS-LPGSITKAGDFLEAN 186 (310)
T ss_dssp HHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcc-hHHHHHHHHHHHHHH
Confidence 999999996 999999998877432 25569999999988843 32 468999999999999
Q ss_pred cCC
Q 026400 216 QCD 218 (239)
Q Consensus 216 Q~~ 218 (239)
|++
T Consensus 187 ~~~ 189 (310)
T 2wy7_A 187 YMN 189 (310)
T ss_dssp GGG
T ss_pred hhc
Confidence 875
No 21
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.54 E-value=3.5e-15 Score=131.43 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcc--cC---CCCCh
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEI--VG---EKMEP 76 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~--~~---~~~~~ 76 (239)
++++.||++||+++|.++ |+|.+|+++. .++ .+.- .+-| |+|+.+|..|..+......+ .. .....
T Consensus 174 ~~Ai~Rgl~wlL~mQ~~n---GGWpqFdpdn--~~y--~~~I-pFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 1r76_A 174 RDAALKGIEYLLASQFPN---GGWPQVWPLE--GGY--HDAI-TYND-DALVHVAELLSDIAAGRDGFGFVPPAIRTRAL 244 (408)
T ss_dssp HHHHHHHHHHHHHHSCTT---SCCBSBSSCC--CGG--GGSE-ECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCC---CCCcCcCccc--ccc--ccCC-CcCc-HHHHHHHHHHHHHHhccCcccccchhhhhhHH
Confidence 578999999999999985 9999999875 232 1111 1123 89999999998876521100 00 01246
Q ss_pred HHHHhhhhHHhhcccC-CcceeeccCCCChhhhhhhchhhhhhhhhccCCCccc--hHHHHHHHHHhhhhCCCCchhhhH
Q 026400 77 ERFYDAANFMLYIQSK-TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVEC--TASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~-dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
++++|||+||++.|.+ ||.|..|....... +.-|.. .+ -++++.... |+-+|..|-.. +. ...++.
T Consensus 245 ~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~yg--T~~Pa~--aR--sYE~psLs~~esa~il~~LM~~----~~-~~~~~~ 313 (408)
T 1r76_A 245 EATNAAIHCIVETQVVQDGKRLGWGQQHDAL--TLRPTS--AR--NFEPAALSSTESARILLFLMEI----EA-PSDAVK 313 (408)
T ss_dssp HHHHHHHHHHHHHSCEETTEECCCCSEECTT--TCSBCC--CS--TTCCSCEEHHHHHHHHHHHTTS----SS-CCHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcccchhcccccc--cCcchh--hh--ccCCccccHHHHHHHHHHHccC----CC-CCHHHH
Confidence 8899999999999999 99997666431110 000100 00 011222211 22233333322 21 223567
Q ss_pred HHHHHHHHHHHhcccCCCCcc
Q 026400 154 NFITNGVKFTEDSQKLDGSWY 174 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q~~dG~w~ 174 (239)
++|.+|++||+++|++||+|.
T Consensus 314 ~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 314 QAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHHHHHHHSCCCC----
T ss_pred HHHHHHHHHHHHhhcCCCcee
Confidence 899999999999999999985
No 22
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.50 E-value=3e-13 Score=132.13 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA 82 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~a 82 (239)
..|++++++|++.|+.| |+|+.+.. ..++...||.++.+|..+... + .++...+.+|
T Consensus 299 ~~i~~g~~rll~~Q~~D---Gsfs~w~~--------------~~~s~wlTAyv~~~l~~a~~~-----~-~v~~~~i~~a 355 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQPS---SAFAAFVK--------------RAPSTWLTAYVVKVFSLAVNL-----I-AIDSQVLCGA 355 (915)
T ss_dssp HHHHHHHHHHGGGCCTT---TCCBSSSS--------------SCBCHHHHHHHHHHHHTTTTT-----S-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC---CCccccCC--------------CCCcceehHHHHHHHHHhhhc-----C-CCCHHHHHHH
Confidence 35788999999999985 88775411 124577899999999987641 2 4678999999
Q ss_pred hhHHhh-cccCCcceeeccCCCChhhhhhhchhhhhhhhhcc---CCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 026400 83 ANFMLY-IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE---HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 158 (239)
Q Consensus 83 v~~Ll~-~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~r 158 (239)
++||++ .|++||+|.....-... ++-+. ++ ++....|+.+|.+|...+...+. ......++|++
T Consensus 356 l~~L~~~~Q~~dG~f~~~~~~~~~---------~m~gg--~~~~~~~~~~ltAyvl~aL~~~g~~~~~-~~~~~~~~i~~ 423 (915)
T 2hr0_B 356 VKWLILEKQKPDGVFQEDAPVIHQ---------EMIGG--LRNNNEKDMALTAFVLISLQEAKDICEE-QVNSLPGSITK 423 (915)
T ss_dssp HHHHHHHHBCTTSCBCCCSCCSSS---------CCCCS--CCCCTTHHHHHHHHHHHHHHHHTTTSTT-TCTTHHHHHHH
T ss_pred HHHHHHhhccCCCccccCccccch---------hhcCC--ccCccccccccHHHHHHHHHhccccccc-CcccchHHHHH
Confidence 999995 99999999532210000 00000 00 01234589999999887542100 00123578999
Q ss_pred HHHHHHhcccC---------------------------------CCCccCCCCcc--hhhHHHHHHHHHHHcCccCCCHH
Q 026400 159 GVKFTEDSQKL---------------------------------DGSWYGTWGVC--FIYSTWWAISGLVAAEKTYSNCL 203 (239)
Q Consensus 159 a~~~L~~~Q~~---------------------------------dG~w~g~~g~~--~~~~T~~al~aL~~~g~~~~~~~ 203 (239)
|++||.+.+.. +|.|...++.. .+..|++||++|...+.. +
T Consensus 424 A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~----~ 499 (915)
T 2hr0_B 424 AGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----D 499 (915)
T ss_dssp HHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT----T
T ss_pred HHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh----h
Confidence 99999987654 33322222222 467899999999998753 3
Q ss_pred HHHHHHHHHHhccCCCCccCC
Q 026400 204 AIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 204 ~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
.+.++++||+++|+++|||+.
T Consensus 500 ~~~~~v~wL~~qq~~~Ggw~S 520 (915)
T 2hr0_B 500 FVPPVVRWLNEQRYYGGGYGS 520 (915)
T ss_dssp THHHHHHHHHTCCCSSSSCCS
T ss_pred hHHHHHHHHHhcccCCCCccc
Confidence 578899999999999999985
No 23
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.44 E-value=1.4e-13 Score=118.17 Aligned_cols=130 Identities=16% Similarity=0.059 Sum_probs=87.6
Q ss_pred hhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHH
Q 026400 83 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKF 162 (239)
Q Consensus 83 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~ 162 (239)
.+.|+..|.++|||+-.- +-... .... .......+..+.|+.+|++|..+.... +..++++++.||++|
T Consensus 37 Ad~~l~~Q~~~GGW~kn~-d~~~~---~~~~----~~~~~~t~DnddTa~vl~~Larv~~~~---~~~~y~~Ai~Rgl~w 105 (332)
T 1gxm_A 37 ADVVLSYQQNNGGWPKNL-DYNSV---GNGG----GGNESGTIDNGATITEMVFLAEVYKSG---GNTKYRDAVRKAANF 105 (332)
T ss_dssp HHHHHHTCCTTSCCCSCC-CTTTC---CCCC----CCCSCEECGGGTTHHHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCCCCCCcce-ecccc---cccC----CCCCCCCccCccHHHHHHHHHHHhccc---cchHHHHHHHHHHHH
Confidence 688999999999997321 11110 0000 000011234567999999999875431 224567999999999
Q ss_pred HHhcccCCCCccCCCCc------chh---hHHHHHHHHHHHcCcc--------------CCCHHHHHHHHHHHHhccCCC
Q 026400 163 TEDSQKLDGSWYGTWGV------CFI---YSTWWAISGLVAAEKT--------------YSNCLAIRKATDFLLNIQCDD 219 (239)
Q Consensus 163 L~~~Q~~dG~w~g~~g~------~~~---~~T~~al~aL~~~g~~--------------~~~~~~i~~a~~~L~~~Q~~d 219 (239)
|+++|.+||||+..+-. ..+ -.|+.+|..|...+.. ....++++||++||++.|.++
T Consensus 106 lL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~d 185 (332)
T 1gxm_A 106 LVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQ 185 (332)
T ss_dssp HHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred HHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCcc
Confidence 99999999999754411 111 2588888888776421 113579999999999999999
Q ss_pred CccC
Q 026400 220 GGWG 223 (239)
Q Consensus 220 GgWg 223 (239)
|||-
T Consensus 186 ggw~ 189 (332)
T 1gxm_A 186 NGVL 189 (332)
T ss_dssp TTEE
T ss_pred CCCc
Confidence 9863
No 24
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=130.72 Aligned_cols=182 Identities=12% Similarity=0.081 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA 83 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av 83 (239)
.|+++++||+++|+.| |+|+.+.. .+ ++..++...||.++.+|..+... ..++...+.+|+
T Consensus 984 ~i~~g~~~ll~~q~~d---Ggf~~f~~---------~~-~~~~~s~wlTAyv~~~l~~a~~~------~~v~~~~l~~a~ 1044 (1451)
T 4acq_A 984 YLNTGYQRQLNYKHYD---GSYSTFGE---------RY-GRNQGNTWLTAFVLKTFAQARAY------IFIDEAHITQAL 1044 (1451)
T ss_dssp HHHHHHHHHGGGBCTT---SCBCSSTT---------GG-GCCCCCHHHHHHHHHHHHHHTTT------SCCCTHHHHHHH
T ss_pred HHHHHHHHHHhhcCCC---CCeeeccC---------CC-CCCCCchhHHHHHHHHHHHhhhh------cccCHHHHHHHH
Confidence 4789999999999985 77775421 00 01225677899999999998652 245788999999
Q ss_pred hHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhcc--CCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 84 NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE--HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 84 ~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+||++.|++||+|.....- +.+.|.+ ..++..||.+|.+|...+.. .. .++|++|++
T Consensus 1045 ~wL~~~Q~~dG~f~~~g~~--------------~~~~m~gg~~~~~~lTAyvl~aL~~~g~~--~~-----~~~i~~A~~ 1103 (1451)
T 4acq_A 1045 IWLSQRQKDNGCFRSSGSL--------------LNNAIKGGVEDEVTLSAYITIALLEIPLT--VT-----HPVVRNALF 1103 (1451)
T ss_dssp HHHHHTEETTTEECCCCCC--------------SCGGGCCSCSCHHHHHHHHHHHHHHTTCC--TT-----CHHHHHHHH
T ss_pred HHHHhhcccCCcccccCcc--------------cchhhcCCCCCCccchHHHHHHHHHcCCC--CC-----CHHHHHHHH
Confidence 9999999999999632210 0011111 12345699999999987642 11 357888888
Q ss_pred HHHhc------------------------------c------------cCCCC---ccCC-----------C--C-cchh
Q 026400 162 FTEDS------------------------------Q------------KLDGS---WYGT-----------W--G-VCFI 182 (239)
Q Consensus 162 ~L~~~------------------------------Q------------~~dG~---w~g~-----------~--g-~~~~ 182 (239)
||++. + ..+|+ |... | . ...+
T Consensus 1104 ~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~v 1183 (1451)
T 4acq_A 1104 CLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEV 1183 (1451)
T ss_dssp HHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGG
T ss_pred HHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHH
Confidence 88755 1 11343 5311 1 0 1235
Q ss_pred hHHHHHHHHHHHcCccC--CCHHHHHHHHHHHHhccCCCCccCCC
Q 026400 183 YSTWWAISGLVAAEKTY--SNCLAIRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 183 ~~T~~al~aL~~~g~~~--~~~~~i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
-.|++||+||...+..+ .+.+.+.+.++||.++|+.+|||+..
T Consensus 1184 E~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~ST 1228 (1451)
T 4acq_A 1184 EMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSST 1228 (1451)
T ss_dssp THHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSSH
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCcccH
Confidence 57999999999886310 02457889999999999999999863
No 25
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=5.5e-12 Score=127.50 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhh
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDA 82 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~a 82 (239)
..|++|+++|+++|+.| |+|+.+.. ..++...||.++.+|..+.+ .+..++...+.++
T Consensus 872 ~~i~~g~~rll~~q~~d---Ggf~~f~~--------------~~~s~~lTa~v~~~l~~a~~-----~~~~v~~~~l~~a 929 (1325)
T 2pn5_A 872 NLLRQGYQNQMRYRQTD---GSFGLWET--------------TNGSVFLTAFVGTSMQTAVK-----YISDIDAAMVEKA 929 (1325)
T ss_dssp HHHHHHHHHHGGGBCTT---SCBCSSSS--------------SCCCHHHHHHHHHHHHHHTT-----TCSCSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC---CCeeccCC--------------CCCCeeehHHHHHHHHHHHh-----hEEcCCHHHHHHH
Confidence 45889999999999985 78775411 12567889999999999865 2345678899999
Q ss_pred hhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHH
Q 026400 83 ANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKF 162 (239)
Q Consensus 83 v~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~ 162 (239)
++||.+.|++||.|......... ++.+. ++ .....|+.+|.+|...+.... .....+++|++|
T Consensus 930 ~~~L~~~q~~dG~f~~~~~~~~~---------~~~g~--~~-~~~~~tayvl~aL~~~g~~~~-----~~~~~i~~a~~~ 992 (1325)
T 2pn5_A 930 LDWLASKQHFSGRFDKAGAEYHK---------EMQGG--LR-NGVALTSYVLMALLENDIAKA-----KHAEVIQKGMTY 992 (1325)
T ss_dssp HHHHHHTCCTTSCCCCCSCCSCH---------HHHCC--SS-TTHHHHHHHHHHHHTCHHHHH-----HTHHHHHHHHHH
T ss_pred HHHHHhhhccCCCccccccccCh---------hhcCc--cc-CCccccHHHHHHHhhCccccc-----ccHHHHHHHHHH
Confidence 99999999999999421110000 00000 00 112346777777766543210 112568888888
Q ss_pred HHhcccC-CCCccC-----------------------------------CC-CcchhhHHHHHHHHHHHcCccCCCHHHH
Q 026400 163 TEDSQKL-DGSWYG-----------------------------------TW-GVCFIYSTWWAISGLVAAEKTYSNCLAI 205 (239)
Q Consensus 163 L~~~Q~~-dG~w~g-----------------------------------~~-g~~~~~~T~~al~aL~~~g~~~~~~~~i 205 (239)
|.+.|+. ++.|.- .| ..+.+-.|++||++|...+. .+.+
T Consensus 993 L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~----~~~~ 1068 (1325)
T 2pn5_A 993 LSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEK----YTDG 1068 (1325)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTC----HHHH
T ss_pred HHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhcc----chhh
Confidence 8887765 555420 01 11234578999999998753 3577
Q ss_pred HHHHHHHHhccCCCCccCCC
Q 026400 206 RKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 206 ~~a~~~L~~~Q~~dGgWg~~ 225 (239)
.+.++||++.|+.+|+|...
T Consensus 1069 ~~~v~wL~~q~~~~g~w~sT 1088 (1325)
T 2pn5_A 1069 IPVMNWLVNQRYVTGSFPST 1088 (1325)
T ss_dssp HHHHHHHHTTCCTTSSCSSH
T ss_pred HHHHHHHHhccCCCCCccch
Confidence 89999999999999999853
No 26
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.25 E-value=2.9e-11 Score=122.84 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=90.0
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
..|.+++++|+++|++||||+.|...++. +++....||+|+.+|+.+.+..+.. ...+
T Consensus 983 ~~i~~g~~~ll~~q~~dGgf~~f~~~~~~-----------------~~~s~wlTAyv~~~l~~a~~~~~v~-----~~~l 1040 (1451)
T 4acq_A 983 GYLNTGYQRQLNYKHYDGSYSTFGERYGR-----------------NQGNTWLTAFVLKTFAQARAYIFID-----EAHI 1040 (1451)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSTTGGGC-----------------CCCCHHHHHHHHHHHHHHTTTSCCC-----THHH
T ss_pred HHHHHHHHHHHhhcCCCCCeeeccCCCCC-----------------CCCchhHHHHHHHHHHHhhhhcccC-----HHHH
Confidence 34788999999999999999988642100 0123346999999999987543221 4789
Q ss_pred HHHHHHHHhcccCCCCccC--CC-------C-cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhc
Q 026400 157 TNGVKFTEDSQKLDGSWYG--TW-------G-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 157 ~ra~~~L~~~Q~~dG~w~g--~~-------g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 215 (239)
.+|++||++.|++||+|.. .| | ...++.|+++|.||..+|.+. .++.|++|++||.++
T Consensus 1041 ~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~-~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1041 TQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTV-THPVVRNALFCLESA 1108 (1451)
T ss_dssp HHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCC-CCHHHHHHHHHHHHh
Confidence 9999999999999999973 33 1 245778999999999999765 578999999999876
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=2.8e-11 Score=122.34 Aligned_cols=124 Identities=14% Similarity=0.144 Sum_probs=92.5
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
..|.+++++|+++|++||||+.|.... ++...|++|+.+|..+.+..-... ...+
T Consensus 872 ~~i~~g~~rll~~q~~dGgf~~f~~~~---------------------~s~~lTa~v~~~l~~a~~~~~~v~----~~~l 926 (1325)
T 2pn5_A 872 NLLRQGYQNQMRYRQTDGSFGLWETTN---------------------GSVFLTAFVGTSMQTAVKYISDID----AAMV 926 (1325)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSSSSC---------------------CCHHHHHHHHHHHHHHTTTCSCSC----HHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeeccCCCC---------------------CCeeehHHHHHHHHHHHhhEEcCC----HHHH
Confidence 457788889999999999999886533 234469999999999865321111 4789
Q ss_pred HHHHHHHHhcccCCCCccCCCCc----------chhhHHHHHHHHHHHcCccC-CCHHHHHHHHHHHHhccCC-CCccCC
Q 026400 157 TNGVKFTEDSQKLDGSWYGTWGV----------CFIYSTWWAISGLVAAEKTY-SNCLAIRKATDFLLNIQCD-DGGWGE 224 (239)
Q Consensus 157 ~ra~~~L~~~Q~~dG~w~g~~g~----------~~~~~T~~al~aL~~~g~~~-~~~~~i~~a~~~L~~~Q~~-dGgWg~ 224 (239)
++|++||.+.|++||+|.+.|.. ...+.|+++|.+|...|... .....+++|++||.++|+. +++|+.
T Consensus 927 ~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~ 1006 (1325)
T 2pn5_A 927 EKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL 1006 (1325)
T ss_dssp HHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH
T ss_pred HHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH
Confidence 99999999999999999776431 12445788888888766321 1246799999999999887 888865
Q ss_pred C
Q 026400 225 S 225 (239)
Q Consensus 225 ~ 225 (239)
.
T Consensus 1007 a 1007 (1325)
T 2pn5_A 1007 S 1007 (1325)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.16 E-value=1.2e-10 Score=113.81 Aligned_cols=116 Identities=21% Similarity=0.125 Sum_probs=88.0
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
+.|.+++.+|+.+|++||||+.|....+ .+..|++|+..|..+..... .. ...+
T Consensus 299 ~~i~~g~~rll~~Q~~DGsfs~w~~~~~---------------------s~wlTAyv~~~l~~a~~~~~-v~----~~~i 352 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQPSSAFAAFVKRAP---------------------STWLTAYVVKVFSLAVNLIA-ID----SQVL 352 (915)
T ss_dssp HHHHHHHHHHGGGCCTTTCCBSSSSSCB---------------------CHHHHHHHHHHHHTTTTTSC-CC----HHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccccCCCCC---------------------cceehHHHHHHHHHhhhcCC-CC----HHHH
Confidence 3577788999999999999998874322 23469999999998864321 11 4789
Q ss_pred HHHHHHHHh-cccCCCCccCCCCc--------------chhhHHHHHHHHHHHcCcc-----CCCHHHHHHHHHHHHhcc
Q 026400 157 TNGVKFTED-SQKLDGSWYGTWGV--------------CFIYSTWWAISGLVAAEKT-----YSNCLAIRKATDFLLNIQ 216 (239)
Q Consensus 157 ~ra~~~L~~-~Q~~dG~w~g~~g~--------------~~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~L~~~Q 216 (239)
++|++||.+ .|.+||+|.+.+.. ...+.|+++|.+|...|.. ....+.+++|++||.+++
T Consensus 353 ~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~ 432 (915)
T 2hr0_B 353 CGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY 432 (915)
T ss_dssp HHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhh
Confidence 999999995 99999999765531 2356689999999988642 113678999999999987
Q ss_pred CC
Q 026400 217 CD 218 (239)
Q Consensus 217 ~~ 218 (239)
+.
T Consensus 433 ~~ 434 (915)
T 2hr0_B 433 MN 434 (915)
T ss_dssp GG
T ss_pred hc
Confidence 65
No 29
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=99.12 E-value=3.5e-10 Score=100.14 Aligned_cols=130 Identities=16% Similarity=0.079 Sum_probs=90.7
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccch
Q 026400 51 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT 130 (239)
Q Consensus 51 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~T 130 (239)
-.+.+++||...+. .+.. +.|..|+..|+ +++|. +. + ..++|+|
T Consensus 138 q~sL~vLALC~~g~--------~v~~----~~v~~Ll~~~~-~~~~~-~g-~---------------------~~sVDT~ 181 (414)
T 2bb6_A 138 QYSLGILALCVHQK--------RVHD----SVVGKLLYAVE-HKPHL-LQ-D---------------------HVSVDTM 181 (414)
T ss_dssp HHHHHHHHHHHTTC--------CCCH----HHHHHHHHHHH-SSSCS-CC-T---------------------TTHHHHH
T ss_pred HHHHHHHHHHHcCC--------CccH----HHHHHHHHHhh-ccCcC-CC-C---------------------cccccHH
Confidence 45778888887653 2322 36677888776 44543 11 0 1247889
Q ss_pred HHHHHHHHHhhhhCCC-CchhhhHHHHHHHHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCH--HHHHH
Q 026400 131 ASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNC--LAIRK 207 (239)
Q Consensus 131 a~~l~aL~~~~~~~~~-~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~--~~i~~ 207 (239)
|.+++||..++...-. .....+..+++..+++|.+.|++||+|+ ..|.|++|++||...+.++ .. ....+
T Consensus 182 AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG------N~~ST~lA~QAL~~~~~~~-~~~~w~~~~ 254 (414)
T 2bb6_A 182 AMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFG------NVYSTPLALQLLMGSLRPS-VELGTACLK 254 (414)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS------STTTHHHHHHHHTTCSSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCcc------chhhHHHHHHHHHhcCCCc-ccccchHHH
Confidence 9999999998764211 1223344445555588889999999984 3678999999999998764 22 37789
Q ss_pred HHHHHHhccCCCCccCC
Q 026400 208 ATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 208 a~~~L~~~Q~~dGgWg~ 224 (239)
++++|++ |.+||+|..
T Consensus 255 a~~~Ll~-q~~dG~F~n 270 (414)
T 2bb6_A 255 AKAALQA-SLQHKTFQN 270 (414)
T ss_dssp HHHHHHH-HHTTTCCCS
T ss_pred HHHHHHH-hccCCCCCC
Confidence 9999999 999999974
No 30
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=99.11 E-value=2.2e-10 Score=100.88 Aligned_cols=124 Identities=19% Similarity=0.132 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHH
Q 026400 53 SESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTAS 132 (239)
Q Consensus 53 a~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~ 132 (239)
|.+++||...+. .--.+.|.-|+..|+.||++ | +++++|.
T Consensus 118 sL~vLALC~~~~------------~v~~~~v~kLl~~~~~~g~~--~--------------------------sVDT~AM 157 (399)
T 2pmv_A 118 SLAILALCQKNS------------EATLPIAVRFAKTLLANSSP--F--------------------------NVDTGAM 157 (399)
T ss_dssp HHHHHHHHHHCH------------HHHHHHHHHHHHHHHHCCSC--C--------------------------CHHHHHH
T ss_pred HHHHHHHHhcCC------------CCCHHHHHHHHHHHHccCCc--c--------------------------cchHHHH
Confidence 677788877642 22345667788888888542 1 3678999
Q ss_pred HHHHHHHhhh---hCCCCc-hhhhHHHHHHHHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHH-HHHH
Q 026400 133 ALKAMTLFQK---LYPKHK-KNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCL-AIRK 207 (239)
Q Consensus 133 ~l~aL~~~~~---~~~~~~-~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~-~i~~ 207 (239)
+++||..+.. .....+ +.++..+|++++++|++.|++||+|+ ..|.|+.|++||...+... ..+ ...+
T Consensus 158 a~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG------n~yST~LA~QAL~~~~~~~-~~~W~c~~ 230 (399)
T 2pmv_A 158 ATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG------DIYSTGLAMQALSVTPEPS-KKEWNCKK 230 (399)
T ss_dssp HHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS------SHHHHHHHHHHHHHCSSCC-SSCCCHHH
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc------ccccHHHHHHHHHhcCCCc-cccccHHH
Confidence 9999999875 221112 34578899999999999999999993 3889999999999998743 234 7889
Q ss_pred HHHHHHhccCCCCccCC
Q 026400 208 ATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 208 a~~~L~~~Q~~dGgWg~ 224 (239)
++++|++ |.+||+|+.
T Consensus 231 al~~l~~-q~~~G~F~n 246 (399)
T 2pmv_A 231 TTDMILN-EIKQGKFHN 246 (399)
T ss_dssp HHHHHHH-HHTTTTTCS
T ss_pred HHHHHHH-HhhCCCcCC
Confidence 9999999 999999974
No 31
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=3.4e-09 Score=93.58 Aligned_cols=125 Identities=20% Similarity=0.303 Sum_probs=85.6
Q ss_pred HHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHH
Q 026400 78 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 157 (239)
Q Consensus 78 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ 157 (239)
-+.++++||++||+-||||+.-.... +....|..+|.+|..++... ..+.
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~~p~~E---------------------sH~G~TfCalaaL~lL~~~~---------~d~~ 241 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSSTIMDE---------------------SHLGFTFCAIASLKLLNYPL---------EKLK 241 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTTSC---------------------CCHHHHHHHHHHHHHTTCCG---------GGCH
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCCcc---------------------cccchhHHHHHHHHHhCccc---------ccHH
Confidence 37889999999999999998432211 22334777888898887531 2357
Q ss_pred HHHHHHHhccc----------------------------CCCCccCCCC-cchhhHHHHHHHHHHHcCccCCCHHHHHHH
Q 026400 158 NGVKFTEDSQK----------------------------LDGSWYGTWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKA 208 (239)
Q Consensus 158 ra~~~L~~~Q~----------------------------~dG~w~g~~g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a 208 (239)
+.++||..+|. ++|||.|+-. ...+.-+.|++.+|...+.....--..++.
T Consensus 242 ~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l 321 (390)
T 3dra_B 242 STKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKA 321 (390)
T ss_dssp HHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHH
T ss_pred HHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccCHHHH
Confidence 88999999997 5799988752 222334677777777666311011235678
Q ss_pred HHHHHhc-cCC-CCccCCCCCcCCCC
Q 026400 209 TDFLLNI-QCD-DGGWGESYLSCPNK 232 (239)
Q Consensus 209 ~~~L~~~-Q~~-dGgWg~~~~s~~~~ 232 (239)
.+||+++ |++ .||++.......+.
T Consensus 322 ~~yiL~c~Q~~~~GGf~d~Pg~~pD~ 347 (390)
T 3dra_B 322 EDYLLNKTQNQLFGGFGRDPDSTPDP 347 (390)
T ss_dssp HHHHHHTTBCTTTCSBCSSTTSCCCH
T ss_pred HHHHHHhccCCCCCCcCCCCCCCCch
Confidence 8999997 665 99999987655443
No 32
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=3.3e-09 Score=93.66 Aligned_cols=132 Identities=11% Similarity=0.068 Sum_probs=83.5
Q ss_pred hHHHHhhhhHHhhcccCC----cceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhh-CCCCchh
Q 026400 76 PERFYDAANFMLYIQSKT----GGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKL-YPKHKKN 150 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~d----Ggw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~-~~~~~~~ 150 (239)
....++-++||+++|.++ |||+...... +...-++.+.+..|-.+|..|..++.. ....+
T Consensus 52 ~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~-------------~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vd-- 116 (390)
T 3dra_B 52 NQELIYYRNFIINQFMIENNQIISFRSTHYFQ-------------KTNQKYDCPNLSSTLFALYNLLILKSPYHTIIN-- 116 (390)
T ss_dssp HHHHHHHHHHHHHHHEEECSSCEEECSSGGGG-------------GSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCC--
T ss_pred hHHHHHHHHHHHHHhccccCCCCCcCCCccCC-------------CCCCccCcccHHHHHHHHHHHHHhCchhhcccc--
Confidence 445566789999998764 8886332100 000001224445677888999888652 11111
Q ss_pred hhHHHHHHHHHHHHhccc---C-CCCcc-----C-------CCCcchhhHHHHHHHHHHHcCccCC-----------CHH
Q 026400 151 EVNNFITNGVKFTEDSQK---L-DGSWY-----G-------TWGVCFIYSTWWAISGLVAAEKTYS-----------NCL 203 (239)
Q Consensus 151 ~~~~~i~ra~~~L~~~Q~---~-dG~w~-----g-------~~g~~~~~~T~~al~aL~~~g~~~~-----------~~~ 203 (239)
.++.++||.+.|+ + ||+|. + .+|...+-.+..|+..+...+.... ...
T Consensus 117 -----r~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~i 191 (390)
T 3dra_B 117 -----RKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDI 191 (390)
T ss_dssp -----HHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCC
T ss_pred -----HHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccc
Confidence 3567899999998 7 99996 2 2555555555556555555443310 024
Q ss_pred HHHHHHHHHHhccCCCCccCCCCC
Q 026400 204 AIRKATDFLLNIQCDDGGWGESYL 227 (239)
Q Consensus 204 ~i~~a~~~L~~~Q~~dGgWg~~~~ 227 (239)
.++++++||++||+.|||++....
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~~p~ 215 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSSTIM 215 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTT
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCC
Confidence 578999999999999999997653
No 33
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.83 E-value=1.3e-07 Score=90.73 Aligned_cols=187 Identities=16% Similarity=0.152 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA 83 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av 83 (239)
.|+++++=|++.|+.| |+|+.+ +- ..++.=.||.++..|..+... ..++...+.+++
T Consensus 369 ~l~~gyqrll~~q~~D---Gsfs~w---------~~-----~~~s~wLTAyV~~~l~~A~~~------i~id~~~i~~a~ 425 (767)
T 4fxk_B 369 LIQKGYMRIQQFRKAD---GSYAAW---------LS-----RDSSTWLTAFVLKVLSLAQEQ------VGGSPEKLQETS 425 (767)
T ss_dssp HHHHHHHHHTTTBCTT---SCBBSS---------SS-----SCBCHHHHHHHHHHHHHTCSS------SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC---CCcccC---------CC-----CCCCchhHHHHHHHHHHHHhh------cCcchHHHHHHH
Confidence 4677888888899885 777743 11 112345799999999998652 135778899999
Q ss_pred hHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCC----chhhhHHHHHHH
Q 026400 84 NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH----KKNEVNNFITNG 159 (239)
Q Consensus 84 ~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~----~~~~~~~~i~ra 159 (239)
.||++.|.+||.|.....-... .+ -+........+..||.++.+|...+...... ....+...|.||
T Consensus 426 ~wL~~~Q~~~G~f~e~g~~~~~----~~-----~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka 496 (767)
T 4fxk_B 426 NWLLSQQQADGSFQDPCPVLDR----SM-----QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKA 496 (767)
T ss_dssp HHHHHTBCTTSCBCCSSCSCCC----CC-----CSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHhhhhcccchhcchhcch----hh-----cCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHH
Confidence 9999999999999632210000 00 0000000112345888999988765432211 123445567777
Q ss_pred HHHHHhccc----------------------------------------CCC-CccCC--------------------C-
Q 026400 160 VKFTEDSQK----------------------------------------LDG-SWYGT--------------------W- 177 (239)
Q Consensus 160 ~~~L~~~Q~----------------------------------------~dG-~w~g~--------------------~- 177 (239)
++||.+... .++ .|... |
T Consensus 497 ~~~L~~~~~~~~~~~y~~Al~ayaL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (767)
T 4fxk_B 497 NSFLGEKASAGLLGAHAAAITAYALSLTKAPVDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMP 576 (767)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBC
T ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcEEcCCeeEEeccCCCccccccccccccccccccc
Confidence 777644321 111 22100 0
Q ss_pred -Cc-chhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCC
Q 026400 178 -GV-CFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 178 -g~-~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
.. ..+-.|++||+++...... .+.+.+.++||.++|+..|||...
T Consensus 577 ~~~s~~VEttayaLla~l~~~~~---~~~a~~iv~WL~~Qr~~~Ggf~ST 623 (767)
T 4fxk_B 577 QAPALWIETTAYALLHLLLHEGK---AEMADQASAWLTRQGSFQGGFRST 623 (767)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSS---CHHHHHHHHHHHHTCCTTSSCSSH
T ss_pred ccchHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHhhcCCCCCcCH
Confidence 00 1144688999888765433 367889999999999999999753
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.80 E-value=8e-09 Score=91.47 Aligned_cols=106 Identities=12% Similarity=-0.053 Sum_probs=78.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh----hHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhc
Q 026400 47 PVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA----NFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII 122 (239)
Q Consensus 47 ~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av----~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~ 122 (239)
.++|.||++++||.++.+... .+...+.|.+++ .+|++.|++||+|+.
T Consensus 176 ~sVDT~AMA~lAL~C~~~~~~----~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN------------------------ 227 (414)
T 2bb6_A 176 VSVDTMAMAGMAFSCLELSNL----NPKQRNRINLALKRVQEKILKAQTPEGYFGN------------------------ 227 (414)
T ss_dssp THHHHHHHHHHHHHHHHHHTS----CGGGHHHHHHHHHHHHHHHHHTBCTTSCBSS------------------------
T ss_pred ccccHHHHHHHHHHHHhhcCC----CcchHHHHHHHHHHHHHHHHHhhcCCCCccc------------------------
Confidence 369999999999999875211 112356778777 888888999999971
Q ss_pred cCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcC
Q 026400 123 EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAE 196 (239)
Q Consensus 123 ~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g 196 (239)
+..|+.++.||...+.... ...-.+.+++++|++ |.+||+|. ....|+.+|.||...+
T Consensus 228 ----~~ST~lA~QAL~~~~~~~~-----~~~w~~~~a~~~Ll~-q~~dG~F~------np~ataQ~lpaL~gkt 285 (414)
T 2bb6_A 228 ----VYSTPLALQLLMGSLRPSV-----ELGTACLKAKAALQA-SLQHKTFQ------NPLMISQLLPVLNQKS 285 (414)
T ss_dssp ----TTTHHHHHHHHTTCSSCCH-----HHHHHHHHHHHHHHH-HHTTTCCC------SHHHHHHHHHHTTTCC
T ss_pred ----hhhHHHHHHHHHhcCCCcc-----cccchHHHHHHHHHH-hccCCCCC------ChHHHHHHHHHhcCCC
Confidence 2359999999988754211 001367899999999 99999994 2458899999988543
No 35
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.52 E-value=2.1e-06 Score=88.63 Aligned_cols=185 Identities=14% Similarity=0.159 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhh
Q 026400 4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAA 83 (239)
Q Consensus 4 ~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av 83 (239)
.|+.+++=++..|+.| |+|+.+ +- ..++.=.||.++..|..+.+. + .++...+.+++
T Consensus 1047 ~i~~g~~r~l~~q~~d---Gsfs~w---------~~-----~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~ 1103 (1661)
T 2b39_A 1047 LIRKGYTQQLAFRQKS---SAYAAF---------QY-----RPPSTWLTAYVVKVFALAANL-----I-AIDSKDLCETV 1103 (1661)
T ss_dssp HHHHHHHHHHTTBCTT---SCBCSS---------TT-----SCCCHHHHHHHHHHHHHHTTT-----S-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC---CCcccc---------CC-----CCCchhhhHHHHHHHHhhhhc-----c-cCCHHHHHHHH
Confidence 4667777788889875 777643 21 113455899999999998752 2 46789999999
Q ss_pred hHHhh-cccCCcceeeccCCCChhhhhhhchhhhhhhhhc-cCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400 84 NFMLY-IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII-EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK 161 (239)
Q Consensus 84 ~~Ll~-~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~ 161 (239)
+||.+ .|+.||.|.....-.. . ++-+..-. ..+....|+.++.+|...+..... ....+...+.++++
T Consensus 1104 ~~L~~~~q~~~g~f~~~~~~~~----~-----~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~-~~~~~~~~i~~a~~ 1173 (1661)
T 2b39_A 1104 KWLILEKQKPDGIFQEDGPVIH----Q-----EMIGGFRDTREKDVSLTAFVLIALHEAKDICEA-QVNSLGRSIAKAGD 1173 (1661)
T ss_dssp HHHHHHTBCTTSCBCCCSCCCC----T-----TSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTT-TCSSHHHHHHHHHH
T ss_pred HHhhHhhCCCCCccccccceec----h-----hhcCCccccccCccccHHHHHHHHHhccccccc-cCcchhHHHHHHHH
Confidence 99995 9999999953211000 0 00000000 001223478888888765431000 00112345556666
Q ss_pred HHHhc----------------------------------ccCCCCccCCCCc-chhhHHHHHHHHHHHcCccCCCHHHHH
Q 026400 162 FTEDS----------------------------------QKLDGSWYGTWGV-CFIYSTWWAISGLVAAEKTYSNCLAIR 206 (239)
Q Consensus 162 ~L~~~----------------------------------Q~~dG~w~g~~g~-~~~~~T~~al~aL~~~g~~~~~~~~i~ 206 (239)
||.+. ......|....+. ..+-.|++||++|...+.. ..+.
T Consensus 1174 yL~~~~~~~~~~y~~A~layAL~l~g~~a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~----~~~~ 1249 (1661)
T 2b39_A 1174 FLENHYRELRRPYTVAIAAYALALLGKLEGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDY----DTTP 1249 (1661)
T ss_dssp HHHHHTTTCCSHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT----TTSH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHcCCcHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCh----hhHH
Confidence 65543 2112234221111 1345788999998887643 3367
Q ss_pred HHHHHHHhccCCCCccCCC
Q 026400 207 KATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 207 ~a~~~L~~~Q~~dGgWg~~ 225 (239)
+.++||+++|+.+|||...
T Consensus 1250 ~iv~wL~~qr~~~gg~~ST 1268 (1661)
T 2b39_A 1250 PVVRWLNEQRYYGGGYGST 1268 (1661)
T ss_dssp HHHHHHHHCCTBTTBBCSH
T ss_pred HHHHHHHhcccCCCCcccc
Confidence 7889999999999999863
No 36
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.52 E-value=1.2e-08 Score=104.67 Aligned_cols=186 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
|+.+++=+++.|+.| |+|+.+ +-. . +++=.||.++..|..+.+ .+..++...|.++++
T Consensus 1032 i~~Gyqr~l~yq~~D---Gsfs~w---------~~~-~----~stWLTAyV~k~f~~A~~-----~i~~Vd~~~l~~~~~ 1089 (1642)
T 3prx_B 1032 IVTGYAQQMVYKKAD---HSYAAF---------TNR-A----SSSWLTAYVVKVFAMAAK-----MVAGISHEIICGGVR 1089 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCC---CCeecC---------CCC-C----CccccHHHHHHHHHHHHh-----hccCCCHHHHHHHHH
Confidence 455666677777774 776643 111 1 223379999999998764 233367889999999
Q ss_pred HHhh-cccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHH
Q 026400 85 FMLY-IQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFT 163 (239)
Q Consensus 85 ~Ll~-~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L 163 (239)
||++ +|++||.|.....-. +.++-+..--....+..||.|+.||...+...+.. ...+..+|.||+.||
T Consensus 1090 wL~~~~Q~~dG~F~e~~~v~---------~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~-~~~~~~~i~~a~~~L 1159 (1642)
T 3prx_B 1090 WLILNRQQPDGAFKENAPVL---------SGTMQGGIQGAEEEVYLTAFILVALLESKTICNDY-VNSLDSSIKKATNYL 1159 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccCCCCccccccccc---------chhccCCccCCCCcccchHHHHHHHHhcccccccc-cccchHHHHHHHHHH
Confidence 9998 899999996322100 00000000000123457999999998875421111 012345788888888
Q ss_pred HhcccC-------------------------------CC-CccCCCC-cchhhHHHHHHHHHHHcCccCCCHHHHHHHHH
Q 026400 164 EDSQKL-------------------------------DG-SWYGTWG-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATD 210 (239)
Q Consensus 164 ~~~Q~~-------------------------------dG-~w~g~~g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~ 210 (239)
.+.-.. ++ .|...-. ...+-.|++||+++...+. .......++
T Consensus 1160 ~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~~l~~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~----~~~a~~iv~ 1235 (1642)
T 3prx_B 1160 LKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAASTGRDHWEEYNAHTHNIEGTSYALLALLKMKK----FDQTGPIVR 1235 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhccCc----hhhHHHHHH
Confidence 755211 11 1210000 1134568899998887642 245678999
Q ss_pred HHHhccCCCCccCCCC
Q 026400 211 FLLNIQCDDGGWGESY 226 (239)
Q Consensus 211 ~L~~~Q~~dGgWg~~~ 226 (239)
||.++||..|||+...
T Consensus 1236 WL~~qr~~~Ggf~STQ 1251 (1642)
T 3prx_B 1236 WLTDQNFYGETYGQTQ 1251 (1642)
T ss_dssp ----------------
T ss_pred HHHHhccCCCcccCcH
Confidence 9999999999998643
No 37
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.46 E-value=1.2e-07 Score=83.48 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=79.8
Q ss_pred CCcchHHHHHHHHHhcCCCCcccCCC-C----ChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhc
Q 026400 48 VSDCSSESFVCCLHLSTMPPEIVGEK-M----EPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII 122 (239)
Q Consensus 48 ~~d~Ta~~l~aL~~~~~~~~~~~~~~-~----~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~ 122 (239)
++|.+|++++||.++.+.-+. +.. . -...|++++.+|++.|++||+|+.
T Consensus 151 sVDT~AMa~LAL~C~~~~~~~--~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fGn------------------------ 204 (399)
T 2pmv_A 151 NVDTGAMATLALTCMYNKIPV--GSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGD------------------------ 204 (399)
T ss_dssp CHHHHHHHHHHHHHHHTBCCT--TCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBSS------------------------
T ss_pred cchHHHHHHHHHHHHhhcccc--ccchhhHHHHHHHHHHHHHHHHHhhcCCCcccc------------------------
Confidence 689999999999998761110 110 1 256788888999999999999971
Q ss_pred cCCCccchHHHHHHHHHhhhhCCCCchhhhHH-HHHHHHHHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCc
Q 026400 123 EHDYVECTASALKAMTLFQKLYPKHKKNEVNN-FITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEK 197 (239)
Q Consensus 123 ~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~-~i~ra~~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~ 197 (239)
...|+.++.||...+.. +. .+ .+.++++||++ |.+||+|. ....|+.+|.+|...+.
T Consensus 205 ----~yST~LA~QAL~~~~~~-~~------~~W~c~~al~~l~~-q~~~G~F~------np~~taQilPaL~~kty 262 (399)
T 2pmv_A 205 ----IYSTGLAMQALSVTPEP-SK------KEWNCKKTTDMILN-EIKQGKFH------NPMSIAQILPSLKGKTY 262 (399)
T ss_dssp ----HHHHHHHHHHHHHCSSC-CS------SCCCHHHHHHHHHH-HHTTTTTC------SHHHHHHHHHHHTTCCG
T ss_pred ----cccHHHHHHHHHhcCCC-cc------ccccHHHHHHHHHH-HhhCCCcC------CHHHHHHHHHHhcCCCc
Confidence 23599999999987642 21 13 57899999998 99999994 35689999999987543
No 38
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.39 E-value=7.5e-06 Score=84.65 Aligned_cols=70 Identities=7% Similarity=0.053 Sum_probs=51.3
Q ss_pred HHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhh
Q 026400 5 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAAN 84 (239)
Q Consensus 5 l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~ 84 (239)
|+.+++=+++.|+.| |+|+.+ + ...++.=.||.++..|..+.+. + .++...+.++++
T Consensus 1049 i~~g~~r~l~~q~~d---Gsfs~w-~-------------~~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~ 1105 (1676)
T 3cu7_A 1049 LKEGMLSIMSYRNAD---YSYSVW-K-------------GGSASTWLTAFALRVLGQVNKY-----V-EQNQNSICNSLL 1105 (1676)
T ss_dssp HHHHHHHGGGGBCTT---SCBCSS-S-------------SSCCCHHHHHHHHHHHHHHHTT-----S-CCCHHHHHHHHH
T ss_pred HHHHHHHHhhccCCC---CCcccc-C-------------CCCCcEEEeHHHHHHHHHHHhc-----c-cCCHHHHHHHHH
Confidence 445555566777764 676643 1 1223456899999999998752 2 467899999999
Q ss_pred HHhh-cccCCccee
Q 026400 85 FMLY-IQSKTGGIT 97 (239)
Q Consensus 85 ~Ll~-~Q~~dGgw~ 97 (239)
||.+ .|++||.|.
T Consensus 1106 ~L~~~~q~~~g~f~ 1119 (1676)
T 3cu7_A 1106 WLVENYQLDNGSFK 1119 (1676)
T ss_dssp HHHHHSBCTTSCBC
T ss_pred HHHHhhCCCCCccc
Confidence 9999 999999985
No 39
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.37 E-value=2.9e-06 Score=81.34 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=79.6
Q ss_pred HHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHH
Q 026400 78 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 157 (239)
Q Consensus 78 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ 157 (239)
.|..++.=|++.|++||||+.|....+ +.-.|+.|+..|..+...... . ...+.
T Consensus 369 ~l~~gyqrll~~q~~DGsfs~w~~~~~---------------------s~wLTAyV~~~l~~A~~~i~i-d----~~~i~ 422 (767)
T 4fxk_B 369 LIQKGYMRIQQFRKADGSYAAWLSRDS---------------------STWLTAFVLKVLSLAQEQVGG-S----PEKLQ 422 (767)
T ss_dssp HHHHHHHHHTTTBCTTSCBBSSSSSCB---------------------CHHHHHHHHHHHHHTCSSSSC-C----HHHHH
T ss_pred HHHHHHHHHHHhhcCCCCcccCCCCCC---------------------CchhHHHHHHHHHHHHhhcCc-c----hHHHH
Confidence 377788889999999999998864322 233699999999988654221 1 46789
Q ss_pred HHHHHHHhcccCCCCccCCC--------C-----cchhhHHHHHHHHHHHcCccCC----------CHHHHHHHHHHHHh
Q 026400 158 NGVKFTEDSQKLDGSWYGTW--------G-----VCFIYSTWWAISGLVAAEKTYS----------NCLAIRKATDFLLN 214 (239)
Q Consensus 158 ra~~~L~~~Q~~dG~w~g~~--------g-----~~~~~~T~~al~aL~~~g~~~~----------~~~~i~~a~~~L~~ 214 (239)
+++.||++.|.+||+|...- | .....-|++++.+|...+.... ....+.+|++||.+
T Consensus 423 ~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~ 502 (767)
T 4fxk_B 423 ETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGE 502 (767)
T ss_dssp HHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHH
Confidence 99999999999999995210 1 1235568999999987643210 12457788888865
Q ss_pred cc
Q 026400 215 IQ 216 (239)
Q Consensus 215 ~Q 216 (239)
..
T Consensus 503 ~~ 504 (767)
T 4fxk_B 503 KA 504 (767)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 40
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.26 E-value=6.8e-06 Score=84.88 Aligned_cols=113 Identities=22% Similarity=0.142 Sum_probs=81.3
Q ss_pred HHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHH
Q 026400 78 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 157 (239)
Q Consensus 78 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ 157 (239)
.|..++.=|+..|++||||+.|....+ +.-.|+.|+..|..+.+... .. ...+.
T Consensus 1047 ~i~~g~~r~l~~q~~dGsfs~w~~~~~---------------------s~wLTAyv~~~l~~A~~~~~-v~----~~~l~ 1100 (1661)
T 2b39_A 1047 LIRKGYTQQLAFRQKSSAYAAFQYRPP---------------------STWLTAYVVKVFALAANLIA-ID----SKDLC 1100 (1661)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCC---------------------CHHHHHHHHHHHHHHTTTSC-CC----HHHHH
T ss_pred HHHHHHHHHHHhhcCCCCccccCCCCC---------------------chhhhHHHHHHHHhhhhccc-CC----HHHHH
Confidence 466677888999999999998864322 23358999999999865432 11 57899
Q ss_pred HHHHHHHh-cccCCCCccCC---C-----C-c-c----hhhHHHHHHHHHHHcCcc-----CCCHHHHHHHHHHHHhcc
Q 026400 158 NGVKFTED-SQKLDGSWYGT---W-----G-V-C----FIYSTWWAISGLVAAEKT-----YSNCLAIRKATDFLLNIQ 216 (239)
Q Consensus 158 ra~~~L~~-~Q~~dG~w~g~---~-----g-~-~----~~~~T~~al~aL~~~g~~-----~~~~~~i~~a~~~L~~~Q 216 (239)
+|++||.+ .|.+||+|... + | . . ...-|++++.+|...+.. ......+.+|++||.+..
T Consensus 1101 ~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~ 1179 (1661)
T 2b39_A 1101 ETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHY 1179 (1661)
T ss_dssp HHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhh
Confidence 99999995 99999998421 0 1 1 1 244589999999988542 113568899999997763
No 41
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.17 E-value=9.1e-06 Score=84.04 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=76.9
Q ss_pred HHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 026400 79 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 158 (239)
Q Consensus 79 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~r 158 (239)
|..++.=++..|++||||+.|....+ +.-.|+.|+..|..+.+... .. +..+.+
T Consensus 1049 i~~g~~r~l~~q~~dGsfs~w~~~~~---------------------s~wLTAyv~~~l~~A~~~~~-v~----~~~l~~ 1102 (1676)
T 3cu7_A 1049 LKEGMLSIMSYRNADYSYSVWKGGSA---------------------STWLTAFALRVLGQVNKYVE-QN----QNSICN 1102 (1676)
T ss_dssp HHHHHHHGGGGBCTTSCBCSSSSSCC---------------------CHHHHHHHHHHHHHHHTTSC-CC----HHHHHH
T ss_pred HHHHHHHHhhccCCCCCccccCCCCC---------------------cEEEeHHHHHHHHHHHhccc-CC----HHHHHH
Confidence 45556667899999999998843222 23358999999998875432 11 578999
Q ss_pred HHHHHHh-cccCCCCccCCC--------C-c------chhhHHHHHHHHHHHcCcc--C-CCHHHHHHHHHHHHhc
Q 026400 159 GVKFTED-SQKLDGSWYGTW--------G-V------CFIYSTWWAISGLVAAEKT--Y-SNCLAIRKATDFLLNI 215 (239)
Q Consensus 159 a~~~L~~-~Q~~dG~w~g~~--------g-~------~~~~~T~~al~aL~~~g~~--~-~~~~~i~~a~~~L~~~ 215 (239)
|++||.+ .|.+||+|.... | . .....|++++.+|...+.. . .....+.+|++||.++
T Consensus 1103 a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1676)
T 3cu7_A 1103 SLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLEN 1178 (1676)
T ss_dssp HHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHh
Confidence 9999999 999999984321 1 1 1234678999999887542 0 0245777888888664
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.01 E-value=7.6e-07 Score=91.38 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
..|..++.-+++.|++||||+.|....++ +-.||.|+..|..+.+...... ...+
T Consensus 1030 ~~i~~Gyqr~l~yq~~DGsfs~w~~~~~s---------------------tWLTAyV~k~f~~A~~~i~~Vd----~~~l 1084 (1642)
T 3prx_B 1030 NQIVTGYAQQMVYKKADHSYAAFTNRASS---------------------SWLTAYVVKVFAMAAKMVAGIS----HEII 1084 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCCeecCCCCCCc---------------------cccHHHHHHHHHHHHhhccCCC----HHHH
Confidence 44667778889999999999988642222 2358889999888765322111 3689
Q ss_pred HHHHHHHHh-cccCCCCccCCC--------C-----cchhhHHHHHHHHHHHcCccC-----CCHHHHHHHHHHHHhc
Q 026400 157 TNGVKFTED-SQKLDGSWYGTW--------G-----VCFIYSTWWAISGLVAAEKTY-----SNCLAIRKATDFLLNI 215 (239)
Q Consensus 157 ~ra~~~L~~-~Q~~dG~w~g~~--------g-----~~~~~~T~~al~aL~~~g~~~-----~~~~~i~~a~~~L~~~ 215 (239)
.++++||.+ +|++||+|.... | ...+.-|++++.||..++... .....+.+|+.||.+.
T Consensus 1085 ~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1085 CGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 999999998 899999995321 1 124567999999999886420 1256899999999865
No 43
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.67 E-value=0.022 Score=51.06 Aligned_cols=153 Identities=12% Similarity=0.196 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcc--cCCcceeeccCCCChhhhhhhchhhhhhhhhccCCC
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ--SKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDY 126 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q--~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 126 (239)
.|+.+..+.+|+.+-+. .+.+.+.+.+.+..+||+..+ .++|||-........ + -
T Consensus 144 LDD~g~~~~~Li~lY~~----T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q---------------~----W 200 (445)
T 3k11_A 144 LDDAGAVCTAMIKLRLK----DESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNT---------------L----W 200 (445)
T ss_dssp GGGTHHHHHHHHHHHHH----CTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTE---------------E----E
T ss_pred chhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCc---------------e----E
Confidence 57778777777765431 234568899999999999988 568998532111000 0 1
Q ss_pred ccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhccc-CCCCccCCC--------CcchhhHHHHHHHHHHHcCc
Q 026400 127 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK-LDGSWYGTW--------GVCFIYSTWWAISGLVAAEK 197 (239)
Q Consensus 127 ~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~-~dG~w~g~~--------g~~~~~~T~~al~aL~~~g~ 197 (239)
.|+--.++..|+.++....+.+..-++.+++....+....++ +.|-|.-.| ......+.+|+++||...-.
T Consensus 201 iD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~ 280 (445)
T 3k11_A 201 LDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLD 280 (445)
T ss_dssp THHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHH
Confidence 233335666677776654322100133444444444444453 467664333 11346678888888876532
Q ss_pred --c--CCC----HHHHHHHHHHHHhccCCCCccCC
Q 026400 198 --T--YSN----CLAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 198 --~--~~~----~~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
+ ... .+..++.++.|+++|.+||-|-.
T Consensus 281 ~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~ 315 (445)
T 3k11_A 281 VLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQ 315 (445)
T ss_dssp HSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEES
T ss_pred hcccccccHHHHHHHHHHHHHHHHHhCCCCCchhh
Confidence 1 101 25778999999999999999985
No 44
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.64 E-value=0.0032 Score=59.69 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcccCCCCccCCCC---cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhcc
Q 026400 156 ITNGVKFTEDSQKLDGSWYGTWG---VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 216 (239)
Q Consensus 156 i~ra~~~L~~~Q~~dG~w~g~~g---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q 216 (239)
--..++||+..|.+||+|+..-+ ...+.+|..++.||...+.. ...|+||+.||.+.-
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fl~~nl 112 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF---PHQCNKGITFFRENI 112 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 45778999999999999964322 12467899999999987653 578999999998653
No 45
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.59 E-value=0.0035 Score=59.85 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcccCCCCccCCCC---cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhcc
Q 026400 156 ITNGVKFTEDSQKLDGSWYGTWG---VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 216 (239)
Q Consensus 156 i~ra~~~L~~~Q~~dG~w~g~~g---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q 216 (239)
--.+++||+..|.+||+|+..-+ ...+.+|..++.||...+.. ...|+||+.||.+.-
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL 115 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 45778999999999999964321 12467899999999997653 589999999997664
No 46
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.56 E-value=0.0036 Score=60.16 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcccCCCCccCCCC---cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhcc
Q 026400 155 FITNGVKFTEDSQKLDGSWYGTWG---VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 216 (239)
Q Consensus 155 ~i~ra~~~L~~~Q~~dG~w~g~~g---~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q 216 (239)
.--.+++||+..|.+||+|+..-+ ...+.+|..++.||...+.. ...|+||+.||.+.-
T Consensus 102 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 102 QFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSNL 163 (817)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 346789999999999999964322 12467899999999998753 589999999998764
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.56 E-value=0.0032 Score=60.26 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcccCCCCccCCC--C-cchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhcc
Q 026400 155 FITNGVKFTEDSQKLDGSWYGTW--G-VCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 216 (239)
Q Consensus 155 ~i~ra~~~L~~~Q~~dG~w~g~~--g-~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q 216 (239)
.--.+++||+..|.+||+|+..- . ...+.+|..++.||...+.. .+.|+||+.||.+.-
T Consensus 75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 136 (785)
T 3s9v_A 75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQA 136 (785)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHH
Confidence 34678999999999999996432 1 12377899999999997653 589999999997664
No 48
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.99 E-value=0.0073 Score=57.21 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=42.6
Q ss_pred HHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHH
Q 026400 79 FYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITN 158 (239)
Q Consensus 79 i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~r 158 (239)
-..+++||+..|.+||+|+.... .. .. + ..-.|..|+.||..++.. ...|+|
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~--~~-~~------D----------~ll~TLAcvlAL~~w~~~---------~~~i~r 103 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYL--FS-YH------D----------RLINTLACVVALRSWNLF---------PHQCNK 103 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSS--CC-HH------H----------HHHHHHHHHHHHHHTTCC---------HHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCC--cc-hh------h----------HHHHHHHHHHHHHHccCC---------HHHHHH
Confidence 45789999999999999984221 00 00 0 122488899999886531 258999
Q ss_pred HHHHHHhcc
Q 026400 159 GVKFTEDSQ 167 (239)
Q Consensus 159 a~~~L~~~Q 167 (239)
|+.||.+.-
T Consensus 104 Gl~fl~~nl 112 (727)
T 3pya_A 104 GITFFRENI 112 (727)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHH
Confidence 999998764
No 49
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=95.92 E-value=0.0087 Score=57.31 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
+.-..+++||+..|.+||+|+.-.. .+. + + ..-.|..|+.||...+.. ...|
T Consensus 74 p~Fp~~~~wil~nQ~~DGsWg~~~~--~~~-~------d----------~l~~TlAcvlAL~~w~~~---------~~~i 125 (785)
T 3s9v_A 74 PHFPETVEWILQNQLKDGSWGEGFY--FLA-Y------D----------RILATLACIITLTLWRTG---------ETQV 125 (785)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCSSS--CCH-H------H----------HHHHHHHHHHHHHHTTCC---------HHHH
T ss_pred CCchHHHHHHHHccCCCCCCCCCCC--Cch-H------H----------HHHHHHHHHHHHHHcccC---------HHHH
Confidence 3345789999999999999973211 000 0 0 122488899999887531 3689
Q ss_pred HHHHHHHHhcc
Q 026400 157 TNGVKFTEDSQ 167 (239)
Q Consensus 157 ~ra~~~L~~~Q 167 (239)
+||+.||.++-
T Consensus 126 ~~Gl~fl~~nl 136 (785)
T 3s9v_A 126 QKGIEFFRTQA 136 (785)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 50
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=95.85 E-value=0.009 Score=57.02 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=43.3
Q ss_pred HHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHH
Q 026400 78 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 157 (239)
Q Consensus 78 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ 157 (239)
.-..+++||+..|.+||+|+.-.. .. . + ...-.|..|+.||...+.. ...|+
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~--~~-~---------~-------d~ll~TlAcvlAL~~w~~~---------~~~i~ 105 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESH--FS-L---------C-------DRLLNTTNSVIALSVWKTG---------HSQVQ 105 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTS--CC-H---------H-------HHHHHHHHHHHHHHHTTCC---------HHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCC--cc-h---------H-------HHHHHHHHHHHHHHHccCC---------HHHHH
Confidence 455789999999999999983211 00 0 0 0123488899999887531 26899
Q ss_pred HHHHHHHhcc
Q 026400 158 NGVKFTEDSQ 167 (239)
Q Consensus 158 ra~~~L~~~Q 167 (239)
||+.||.++-
T Consensus 106 ~Gl~fl~~nl 115 (764)
T 3p5p_A 106 QGAEFIAENL 115 (764)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 51
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.83 E-value=0.12 Score=46.19 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhhhhCCC--CchhhhHHHHHHHHHHHHhcccCCCCccCCCC--c--chhhHHHHHHHHHHHc---CccC-
Q 026400 130 TASALKAMTLFQKLYPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTWG--V--CFIYSTWWAISGLVAA---EKTY- 199 (239)
Q Consensus 130 Ta~~l~aL~~~~~~~~~--~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~g--~--~~~~~T~~al~aL~~~---g~~~- 199 (239)
.+-++++|...-...|. ..+.++.+.+++.+++|++.|.++|.|.-... . ..+.+|++.+.+|... |.-.
T Consensus 268 nGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~ 347 (445)
T 3k11_A 268 NGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDA 347 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCH
T ss_pred chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCH
Confidence 55567777765444333 24466778899999999999999999963221 1 2355677766666542 3211
Q ss_pred -CCHHHHHHHHHHHHhccCCCCccCC
Q 026400 200 -SNCLAIRKATDFLLNIQCDDGGWGE 224 (239)
Q Consensus 200 -~~~~~i~~a~~~L~~~Q~~dGgWg~ 224 (239)
.-.++++|+.+.|+++-++||--+.
T Consensus 348 ~~Y~~~A~ka~~~L~~~i~~dG~l~~ 373 (445)
T 3k11_A 348 IAYGPVAQLGWHAVAGKINEEGQVEG 373 (445)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBCS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEec
Confidence 0136788999999999999996543
No 52
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=95.81 E-value=0.011 Score=56.95 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 77 ERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 77 ~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
..-..+++||+..|.+||+|+.-.. .. .. + ..-.|..|+.||...+.. ...|
T Consensus 101 p~Fp~~~~wil~nQ~~DGsWg~~~~--~~-~~------d----------~ll~TlAcvlAL~~w~~~---------~~~i 152 (817)
T 3sdr_A 101 PQFPQTVDWILKNQLKDGSWGIQSH--FL-LS------D----------RLLATLSCVLVLLKWNVG---------DLQV 152 (817)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCTTC--CC-HH------H----------HHHHHHHHHHHHHHTTCC---------HHHH
T ss_pred CCchHHHHHHHHccCCCCCCCCCCC--cc-hH------H----------HHHHHHHHHHHHHHccCC---------HHHH
Confidence 3345789999999999999983211 00 00 0 123488899999987531 3689
Q ss_pred HHHHHHHHhcc
Q 026400 157 TNGVKFTEDSQ 167 (239)
Q Consensus 157 ~ra~~~L~~~Q 167 (239)
+||+.||.+.-
T Consensus 153 ~~Gl~fl~~nl 163 (817)
T 3sdr_A 153 EQGIEFIKSNL 163 (817)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 53
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=95.35 E-value=0.094 Score=45.97 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcC---CCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCcc
Q 026400 52 SSESFVCCLHLST---MPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVE 128 (239)
Q Consensus 52 Ta~~l~aL~~~~~---~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 128 (239)
.+-++.+|...-+ .|....+++...+.+.+.+++|+..|.+||.|-.. .+.+. ++.+
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~-~d~~~-------------------~y~E 294 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTL-LDDPH-------------------SYLE 294 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESB-TTCTT-------------------SCEE
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhc-cCCCC-------------------CCcc
Confidence 3555666654332 23221112223455777789999999999999632 11110 2456
Q ss_pred chHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccCCC-----Cc-----------chhhHHHHHHHHH
Q 026400 129 CTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW-----GV-----------CFIYSTWWAISGL 192 (239)
Q Consensus 129 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~-----g~-----------~~~~~T~~al~aL 192 (239)
.++.++.+.+.+....-.+-..+..++++|+++.|.+.-++||.-.+-- |. ...++.+.+|+|+
T Consensus 295 sSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v~~gt~~g~~~~~Y~~~p~~~~~~G~~~~lla~ 374 (382)
T 3pmm_A 295 ASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQTSFGTGMGSDLDFYRQIPLTSMPYGQAMAILCL 374 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCSCBCCCCCCSSHHHHHTCCBCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeCeecCCCCCCChhhhhcccCCCCCccHHHHHHHH
Confidence 6666766655432111111124567899999999999999999653221 10 1245777777776
Q ss_pred HHc
Q 026400 193 VAA 195 (239)
Q Consensus 193 ~~~ 195 (239)
...
T Consensus 375 ~e~ 377 (382)
T 3pmm_A 375 TEY 377 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 54
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=94.41 E-value=0.15 Score=44.26 Aligned_cols=126 Identities=17% Similarity=0.275 Sum_probs=74.9
Q ss_pred HHhhhhHH-hhcccCCcce-eeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHH
Q 026400 79 FYDAANFM-LYIQSKTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFI 156 (239)
Q Consensus 79 i~~av~~L-l~~Q~~dGgw-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i 156 (239)
+.+.+.|. ...+.++||| ..+..+... +++ | .....++.+|.+++.+.... .+..+..+++
T Consensus 17 ~~~~l~fw~~~~~D~~GGf~~~~~~d~~~-----~~~-e---------K~l~~nar~i~~~a~a~~~~--~~~~~~~~~A 79 (388)
T 2gz6_A 17 LNDVLPFWENHSLDSEGGYFTCLDRQGKV-----YDT-D---------KFIWLQNRQVWTFSMLCNQL--EKRENWLKIA 79 (388)
T ss_dssp HHTHHHHHHHHCBCTTSSBCCEEBTTSCE-----EEC-C---------EEHHHHHHHHHHHHHHHHHT--CCCHHHHHHH
T ss_pred HHhHHHHHHhcCCCCCCCEEeEECCCCCc-----CCc-c---------hhHHHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 34566766 4466668885 666654321 111 1 12346888888888865531 1224556889
Q ss_pred HHHHHHHHhc-ccCCCCccCCC---C-----cchhhHHHHHHHHHHHc----CccCCCHHHHHHHHHHHHhccCC-CCcc
Q 026400 157 TNGVKFTEDS-QKLDGSWYGTW---G-----VCFIYSTWWAISGLVAA----EKTYSNCLAIRKATDFLLNIQCD-DGGW 222 (239)
Q Consensus 157 ~ra~~~L~~~-Q~~dG~w~g~~---g-----~~~~~~T~~al~aL~~~----g~~~~~~~~i~~a~~~L~~~Q~~-dGgW 222 (239)
+++++||++. +.++|+|.... | ....+..++++.||..+ |.+. -.+..++..+++++.... +|.|
T Consensus 80 ~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~-~l~~A~~~~~~i~~~~~d~~g~~ 158 (388)
T 2gz6_A 80 RNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEW-AKDVAMQAYNNVLRRKDNPKGKY 158 (388)
T ss_dssp HHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHhcCCCccc
Confidence 9999999988 67789886432 2 23567888888888763 3221 134556777888887643 4444
No 55
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=93.32 E-value=0.59 Score=40.54 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhhhhCCCC--chhhhHHHHHHHHHHHHhcccC-CCCccCCC--C---c--chhhHHHHHHHHHHHc---C
Q 026400 130 TASALKAMTLFQKLYPKH--KKNEVNNFITNGVKFTEDSQKL-DGSWYGTW--G---V--CFIYSTWWAISGLVAA---E 196 (239)
Q Consensus 130 Ta~~l~aL~~~~~~~~~~--~~~~~~~~i~ra~~~L~~~Q~~-dG~w~g~~--g---~--~~~~~T~~al~aL~~~---g 196 (239)
.+-++.+|..+.+..|.. ++.++.+..++.+++|++.|.+ ||.|.... + . ..+.+|++...+|... |
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g 294 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG 294 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCC
Confidence 455778887765544432 3455778899999999999997 99996322 1 1 2345677766666653 3
Q ss_pred c-cCCCHHHHHHHHHHHHhc---cCCCCc
Q 026400 197 K-TYSNCLAIRKATDFLLNI---QCDDGG 221 (239)
Q Consensus 197 ~-~~~~~~~i~~a~~~L~~~---Q~~dGg 221 (239)
. +..-.++++|+.+.|.+. .++||-
T Consensus 295 ~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 295 YLDRAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred CCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence 1 111368899999999884 578983
No 56
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=93.16 E-value=0.52 Score=46.52 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcc-cCCcceee-ccCCCChhhhhhhchhhhhhhhhccCCC
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQ-SKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDY 126 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q-~~dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 126 (239)
.=|++.++++|+.++ ..+..++.++||.+.| +++|.|.. |..+..+. +....
T Consensus 331 ~RDaa~t~~all~~G-----------~~e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~---------------w~~~Q 384 (1020)
T 1ulv_A 331 ARDMYQSVTALLAAG-----------DEEAAARGVEWLFTYQQQPDGHFPQTSRVDGTIG---------------QNGIQ 384 (1020)
T ss_dssp HHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBC---------------CCCCB
T ss_pred cchHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCCCCeeeEEecCCCcC---------------CCCcc
Confidence 468889999999875 2466788899999999 89998852 32222211 11123
Q ss_pred ccchHHHHHHHHHhhhhCCCCchhhhHH-HHHHHHHHHHhccc--CCCCccCCCCcchhhHHHHHHHHHHH
Q 026400 127 VECTASALKAMTLFQKLYPKHKKNEVNN-FITNGVKFTEDSQK--LDGSWYGTWGVCFIYSTWWAISGLVA 194 (239)
Q Consensus 127 ~~~Ta~~l~aL~~~~~~~~~~~~~~~~~-~i~ra~~~L~~~Q~--~dG~w~g~~g~~~~~~T~~al~aL~~ 194 (239)
.+.++..|.++..+.+. + .++-+ .++++++|+.+.-. ..|-|-...| .+++..+++..||..
T Consensus 385 ~D~~g~~l~~~~~~~~~----d-~~~w~~~v~~al~~i~~~g~~~~~~~WEe~~g-~~~~t~~~~~~AL~~ 449 (1020)
T 1ulv_A 385 LDETAFPILLANQIGRT----D-AGFYRNELKPAADYLVAAGPKTPQERWEETGG-YSTSTLASQIAALAA 449 (1020)
T ss_dssp THHHHHHHHHHHHHTCC----C-HHHHHHTHHHHHHHHHHHCSCBSBCTTSSCCB-EEHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHhc----C-HHHHHHHHHHHHHHHHHhCCCCChhhhcccCC-cCHHHHHHHHHHHHH
Confidence 47788888888876532 1 44455 89999999998742 2234432223 345555555555544
No 57
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=93.13 E-value=0.74 Score=40.18 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhhhh--CCC--CchhhhHHHHHHHHHHHHhcccCCCCccCCC--Cc--chhhHHHHHHHHHHHc---Cc-
Q 026400 130 TASALKAMTLFQKL--YPK--HKKNEVNNFITNGVKFTEDSQKLDGSWYGTW--GV--CFIYSTWWAISGLVAA---EK- 197 (239)
Q Consensus 130 Ta~~l~aL~~~~~~--~~~--~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~--g~--~~~~~T~~al~aL~~~---g~- 197 (239)
.+-++.+|...-.. .|. ..+.++.+.+++.+++|++.|.+||.|.-.. .. ..+.+|++.+.||... |.
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l 314 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYV 314 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSS
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCC
Confidence 55567777765433 232 1345677889999999999999999996322 11 2355677777776542 22
Q ss_pred cCCCHHHHHHHHHHHHhccCCCCccCCCC
Q 026400 198 TYSNCLAIRKATDFLLNIQCDDGGWGESY 226 (239)
Q Consensus 198 ~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~ 226 (239)
+..-.++++|+++-|+++-++||..+..+
T Consensus 315 ~~~Y~~~a~ka~~~l~~~i~~dG~l~~v~ 343 (382)
T 3pmm_A 315 GQHYAGVAEKAIRGIVQNISPQGELLQTS 343 (382)
T ss_dssp CGGGHHHHHHHHHHHHHTBCTTSCBCSCB
T ss_pred cHHHHHHHHHHHHHHHhhCCCCCCEeCee
Confidence 11136789999999999999999876543
No 58
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=92.57 E-value=0.34 Score=45.64 Aligned_cols=112 Identities=10% Similarity=0.058 Sum_probs=68.4
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceee-ccCCCChhhhhhhchhhhhhhhhccCCCc
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYV 127 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 127 (239)
.=|.+.+++||+.++ ..+..++.++||.+.|+++|+|.. +..+..+ .+.....
T Consensus 342 ~RD~~~~~~al~~~G-----------~~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p---------------~w~~~Q~ 395 (684)
T 1lf6_A 342 SRDLYHVANAFIAAG-----------DVDSANRSLDYLAKVVKDNGMIPQNTWISGKP---------------YWTGIQL 395 (684)
T ss_dssp HHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHHSSCCSCBCTTSCB---------------CCCCCCH
T ss_pred ccHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhcCCCCCcccceeCCCCc---------------ccCCccc
Confidence 467888999999875 246678899999999999999842 2222221 1222335
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHH-HHHHHHHHHhcccC--CCCccCCCCcchhhHHHHHHHHHHH
Q 026400 128 ECTASALKAMTLFQKLYPKHKKNEVNNF-ITNGVKFTEDSQKL--DGSWYGTWGVCFIYSTWWAISGLVA 194 (239)
Q Consensus 128 ~~Ta~~l~aL~~~~~~~~~~~~~~~~~~-i~ra~~~L~~~Q~~--dG~w~g~~g~~~~~~T~~al~aL~~ 194 (239)
|.++..|.++..+... . +-+. ++++++|+.+.-.. .|-|....|.+ ++..+++..||..
T Consensus 396 D~~g~~l~~~~~~~~~----g---~~~~~v~~al~~i~~~~~~~~~g~WE~~~g~~-~~t~~~~~~aL~~ 457 (684)
T 1lf6_A 396 DEQADPIILSYRLKRY----D---LYDSLVKPLADFIIKIGPKTGQERWEEIGGYS-PATMAAEVAGLTC 457 (684)
T ss_dssp HHHHHHHHHHHHTTCG----G---GTTTTHHHHHHHHHHHCSSBSSCTTSSCCBBC-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHc----C---chHHHHHHHHHHHHHhCCCCCcccccccCCcC-HHHHHHHHHHHHH
Confidence 6788888776654321 1 3466 99999999887532 34443222332 3334444444443
No 59
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=92.45 E-value=0.71 Score=40.39 Aligned_cols=130 Identities=11% Similarity=0.091 Sum_probs=78.6
Q ss_pred hHHHHhhhhHHh-hcccCCcceee-ccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhH
Q 026400 76 PERFYDAANFML-YIQSKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVN 153 (239)
Q Consensus 76 ~~~i~~av~~Ll-~~Q~~dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~ 153 (239)
...+.+.+.|-+ ..+.++|||.. ...+... .+..| .....++..|.+++.+.... ...+..
T Consensus 12 ~~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~~-----~~~~~---------k~l~~n~r~i~~~a~a~~~~---g~~~~l 74 (402)
T 3gt5_A 12 RTHISDTMAFYHPRCIDSAGGFFHYFRDDGSI-----YNATH---------RHLVSSTRFVFNYAMAYLQF---GTAEYL 74 (402)
T ss_dssp HHHHHHHHHHHTTTTBCTTSSBCCEECTTSCE-----EESSE---------EEHHHHHHHHHHHHHHHHHH---CCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcCeeeEECCCCCC-----CCCCc---------hhHHHHHHHHHHHHHHHHhh---CChHHH
Confidence 455677787654 56668899963 4433221 11101 12335788888888865432 224456
Q ss_pred HHHHHHHHHHHhcc-cCC-CCccCCC--C-----cchhhHHHHHHHHHHH---cCccCCCHHHHHHHHHHHHhcc-CC-C
Q 026400 154 NFITNGVKFTEDSQ-KLD-GSWYGTW--G-----VCFIYSTWWAISGLVA---AEKTYSNCLAIRKATDFLLNIQ-CD-D 219 (239)
Q Consensus 154 ~~i~ra~~~L~~~Q-~~d-G~w~g~~--g-----~~~~~~T~~al~aL~~---~g~~~~~~~~i~~a~~~L~~~Q-~~-d 219 (239)
++++++++||++.- .++ |+|.-.+ | ..+.|.-++++.||.. .+.+. ..+..++..++|.+.- .+ .
T Consensus 75 ~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~~-~l~~A~~l~~~i~~~f~d~~~ 153 (402)
T 3gt5_A 75 DAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQ-AREWMDETWCLLERHFWDAEY 153 (402)
T ss_dssp HHHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHTEETTT
T ss_pred HHHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCChh-HHHHHHHHHHHHHHHhcCCcC
Confidence 78999999998853 455 8885432 2 2357788888888776 33332 2456667777887763 33 4
Q ss_pred CccC
Q 026400 220 GGWG 223 (239)
Q Consensus 220 GgWg 223 (239)
|++-
T Consensus 154 G~~~ 157 (402)
T 3gt5_A 154 GLYK 157 (402)
T ss_dssp TEEC
T ss_pred CCch
Confidence 6654
No 60
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=92.18 E-value=0.37 Score=41.84 Aligned_cols=103 Identities=11% Similarity=0.057 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcC-CCCcccCCCCChHHHHhhhhHHhhcccC-CcceeeccCCCChhhhhhhchhhhhhhhhccCCCccch
Q 026400 53 SESFVCCLHLST-MPPEIVGEKMEPERFYDAANFMLYIQSK-TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT 130 (239)
Q Consensus 53 a~~l~aL~~~~~-~~~~~~~~~~~~~~i~~av~~Ll~~Q~~-dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~T 130 (239)
+.++.+|..+-+ .|....+++...+...+.+++|+..|.+ ||.|-. ..+.+. . ...+.+.+
T Consensus 216 gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~-~ld~~~-----------~-----~~~~~EsS 278 (373)
T 1nc5_A 216 GWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQ-IVDKGD-----------R-----SDNWLESS 278 (373)
T ss_dssp HHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBS-BTTCTT-----------S-----TTCCBCHH
T ss_pred hHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceee-ecCCCC-----------C-----CCCCcccc
Confidence 556677765433 2322111222345566778999999997 998853 111110 0 01245667
Q ss_pred HHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhc---ccCCCC
Q 026400 131 ASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDS---QKLDGS 172 (239)
Q Consensus 131 a~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~---Q~~dG~ 172 (239)
+.++.+.+.+......+-.++..++++|+++.|.+. .++||.
T Consensus 279 atA~~ay~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 279 GSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp HHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred HHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence 777766555421100111135678999999999884 478884
No 61
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=91.15 E-value=1.1 Score=38.84 Aligned_cols=128 Identities=13% Similarity=0.056 Sum_probs=71.2
Q ss_pred HHhhhhHHh-hccc-CCcce-eeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHH
Q 026400 79 FYDAANFML-YIQS-KTGGI-TGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNF 155 (239)
Q Consensus 79 i~~av~~Ll-~~Q~-~dGgw-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~ 155 (239)
+.+++.|.. .... ..||| ..+..+..+ ++ . +.....++..|.+++.+....++.+..+..+.
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~-----~~-~---------~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~ 83 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRV-----YD-D---------LKYVWLQGRQVWMYCRLYRKLERFHRPELLDA 83 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCB-----SC-C---------CEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCC-----CC-C---------ccchhhhHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 567888887 4555 36888 444433222 01 0 11233477778888765543211123456789
Q ss_pred HHHHHHHHHhc-ccCCC--CccCCC---C-----cchhhHHHHHHHHHHHc----CccCCCHHHHHHHHHHHHhcc--CC
Q 026400 156 ITNGVKFTEDS-QKLDG--SWYGTW---G-----VCFIYSTWWAISGLVAA----EKTYSNCLAIRKATDFLLNIQ--CD 218 (239)
Q Consensus 156 i~ra~~~L~~~-Q~~dG--~w~g~~---g-----~~~~~~T~~al~aL~~~----g~~~~~~~~i~~a~~~L~~~Q--~~ 218 (239)
++++++||.+. +.++| +|.... | ..+.|.-++++.++... |.+. ..+...+..+++++.. .+
T Consensus 84 A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~-~~~~A~~l~~~~~~~~~d~~ 162 (402)
T 1fp3_A 84 AKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEAR-YQSEAVDMMDQIVHWVREDP 162 (402)
T ss_dssp HHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHhccCC
Confidence 99999999997 55554 675332 2 22355566666666532 3221 1344456666666654 45
Q ss_pred CCcc
Q 026400 219 DGGW 222 (239)
Q Consensus 219 dGgW 222 (239)
+|.|
T Consensus 163 ~G~f 166 (402)
T 1fp3_A 163 SGLG 166 (402)
T ss_dssp GGGC
T ss_pred Cccc
Confidence 6766
No 62
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=91.08 E-value=1.2 Score=38.36 Aligned_cols=153 Identities=8% Similarity=-0.033 Sum_probs=78.2
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhc-ccCCcceee-ccCCCChhhhhhhchhhhhhhhhccCCC
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKTGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDY 126 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 126 (239)
..++|..+.++..+.+.. .+.+.+.+.+.++++||++. +.++|||.. .+.++.+ ..+...
T Consensus 52 l~~nar~i~~~a~a~~~~---~~~~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~---------------~~~~~~ 113 (388)
T 2gz6_A 52 IWLQNRQVWTFSMLCNQL---EKRENWLKIARNGAKFLAQHGRDDEGNWYFALTRGGEP---------------LVQPYN 113 (388)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHHHHSBCTTSCBCSEECTTSCB---------------CCCCCC
T ss_pred HHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc---------------ccCCcc
Confidence 568899998888754410 12334677888999999987 777899952 2222211 001123
Q ss_pred ccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhccc-CCCCccCCC---Cc-chhhHHHHHHHHHHHcCccCCC
Q 026400 127 VECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK-LDGSWYGTW---GV-CFIYSTWWAISGLVAAEKTYSN 201 (239)
Q Consensus 127 ~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~-~dG~w~g~~---g~-~~~~~T~~al~aL~~~g~~~~~ 201 (239)
....+.++.+|+.+..... ..+..+.+.+..+++++... ++|.|...+ .. ......+.++.+|......-.+
T Consensus 114 ~~~~af~i~al~~~y~~tg---~~~~l~~A~~~~~~i~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~all~l~~~t~d 190 (388)
T 2gz6_A 114 IFSDCFAAMAFSQYALASG---EEWAKDVAMQAYNNVLRRKDNPKGKYTKTYPGTRPMKALAVPMILANLTLEMEWLLPQ 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHTC--------------CCCCEETHHHHHHHHHHHHTGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCcccCcccCCCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 3457778888877554322 12345677788888888764 345442222 10 0012233445555554321111
Q ss_pred ---HHHHHHHHHHHHhcc--CCCCcc
Q 026400 202 ---CLAIRKATDFLLNIQ--CDDGGW 222 (239)
Q Consensus 202 ---~~~i~~a~~~L~~~Q--~~dGgW 222 (239)
.+...+.++.+.+.. .++|+.
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~g~~ 216 (388)
T 2gz6_A 191 ETLENVLAATVQEVMGDFLDQEQGLM 216 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeE
Confidence 234455666666542 244554
No 63
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=90.87 E-value=0.87 Score=42.24 Aligned_cols=119 Identities=11% Similarity=0.077 Sum_probs=65.1
Q ss_pred CcchHHHHHHHH----HhcCCCCcccCCCCChHHHHhhhhHHhh---cc---cCCccee--------eccCCCChhhhhh
Q 026400 49 SDCSSESFVCCL----HLSTMPPEIVGEKMEPERFYDAANFMLY---IQ---SKTGGIT--------GWEPAGAPSWIEL 110 (239)
Q Consensus 49 ~d~Ta~~l~aL~----~~~~~~~~~~~~~~~~~~i~~av~~Ll~---~Q---~~dGgw~--------~~~~~~~~~~~~~ 110 (239)
+-|.+.+++||+ .++ +.+...+..+||.. .| +++|.|. .+..+...
T Consensus 52 ~RDaa~t~~aL~~~~~~~G-----------~~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~----- 115 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTETY-----------DAGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKP----- 115 (599)
T ss_dssp HHHHHHHHHHHHHHHHHSB-----------CHHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCB-----
T ss_pred hhhHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCcc-----
Confidence 568888889988 543 34667778899974 77 8999983 12221110
Q ss_pred hchhhhhhhhhccCCCccc-----hHHHHHHHHHhhhhCCCCc---hhhhHHHHHHHHHHHHhcccCC--CCccCCCCcc
Q 026400 111 LNPIEFLDEVIIEHDYVEC-----TASALKAMTLFQKLYPKHK---KNEVNNFITNGVKFTEDSQKLD--GSWYGTWGVC 180 (239)
Q Consensus 111 ~~~~e~~~~~~~~~~~~~~-----Ta~~l~aL~~~~~~~~~~~---~~~~~~~i~ra~~~L~~~Q~~d--G~w~g~~g~~ 180 (239)
| +.-+..+-.+. ++.++.++. +... +.. ...+-+.|+++++|+....++. |-|-.+.| .
T Consensus 116 ------~-~~~w~~~Q~D~~glr~~~~~~~~~~-~~~~--g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEer~g-~ 184 (599)
T 2vn4_A 116 ------F-TGNWGRPQRDGPALRAIALIGYSKW-LINN--NYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEVNG-S 184 (599)
T ss_dssp ------C-CSCCSCCCTHHHHHHHHHHHHHHHH-HHHT--TCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSCCEE-E
T ss_pred ------c-cCcCCCeeccccchhHHHHHHHHHH-HHHh--CCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeeecCC-c
Confidence 0 00011122234 344443332 2111 111 1124578999999999988753 45532223 4
Q ss_pred hhhHHHHHHHHHHH
Q 026400 181 FIYSTWWAISGLVA 194 (239)
Q Consensus 181 ~~~~T~~al~aL~~ 194 (239)
+++..+.+..||..
T Consensus 185 ~~~T~~~~~~aL~~ 198 (599)
T 2vn4_A 185 SFFTVANQHRALVE 198 (599)
T ss_dssp EHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 56666666666644
No 64
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=89.56 E-value=0.95 Score=40.93 Aligned_cols=162 Identities=12% Similarity=0.096 Sum_probs=83.7
Q ss_pred HHHHHHhccCC-CCCCCCcchhcCCCCCCcccccC----CCCCCCCCcchHHHHHHHHHhcCCCCcccCCC--CChHHHH
Q 026400 8 AHDFLKNSQVT-DNPQGDFRSMFRHISKGGWTFSD----KDHGLPVSDCSSESFVCCLHLSTMPPEIVGEK--MEPERFY 80 (239)
Q Consensus 8 a~~~l~~~Q~~-~~~~g~~~~~~~~~~~ggw~~~~----~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~--~~~~~i~ 80 (239)
+++-|+.+..+ + |.. .....|+..-+. .+-.|-=+=|.+.++.||+.++.. +.. -..+.+.
T Consensus 29 ~~~~~l~ni~~~~---g~~----~~~~~GaiIASpttsnpDYrY~W~RDaa~t~~aL~~~g~~-----~~~~~~l~~~a~ 96 (492)
T 2fba_A 29 SLYYLLQNIAYPE---GQF----NNGVPGTVIASPSTSNPDYYYQWTRDSAITFLTVLSELED-----NNFNTTLAKAVE 96 (492)
T ss_dssp HHHHHHHTBBCTT---SSB----TTSCTTCBCSCSCBSSSBCCSEEHHHHHHHHHHHHHHHHH-----TTTCHHHHHHHH
T ss_pred hHHHHHhcCCCcc---cCC----CCCCCCeEEEeCCCCCCCCeEEccchHHHHHHHHHHhCcc-----cccccchHHHHH
Confidence 45556777665 3 321 233456654332 121221156788888888877631 000 0134555
Q ss_pred hhhhH---HhhcccCCccee----------eccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhh---C
Q 026400 81 DAANF---MLYIQSKTGGIT----------GWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKL---Y 144 (239)
Q Consensus 81 ~av~~---Ll~~Q~~dGgw~----------~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~---~ 144 (239)
+-++| |....+++|.|. -|..+++. +. .-+..+-.+.++.++.+|..+... .
T Consensus 97 ~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~-----------~~-~~w~~~Q~D~~g~~~~al~~~~~~~~~~ 164 (492)
T 2fba_A 97 YYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSA-----------YT-GAWGRPQNDGPALRAYAISRYLNDVNSL 164 (492)
T ss_dssp HHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCB-----------CC-SCCSCCBTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCcCcccccccCceeeccCCCc-----------CC-cccCCccccchhHHHHHHHHHHHHhhcc
Confidence 66665 444448889886 33333221 00 012234457788887777654211 0
Q ss_pred CCC-------------chhhh-HHHHHHHHHHHHhcccCC--CCccCCCCcchhhHHHHHHHHHHH
Q 026400 145 PKH-------------KKNEV-NNFITNGVKFTEDSQKLD--GSWYGTWGVCFIYSTWWAISGLVA 194 (239)
Q Consensus 145 ~~~-------------~~~~~-~~~i~ra~~~L~~~Q~~d--G~w~g~~g~~~~~~T~~al~aL~~ 194 (239)
... ....+ .+.|++.++|+...-+.. |-|-...| .++|..+.+..||..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd~dlWEer~g-~~~~T~~~~~~AL~~ 229 (492)
T 2fba_A 165 NEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGFDLWEENQG-RHFFTSLVQQKALAY 229 (492)
T ss_dssp STTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEECTTSCCEE-CCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCcCccCC-CChHHHHHHHHHHHH
Confidence 100 00233 378999999998876543 45532223 466766666666654
No 65
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.00 E-value=0.76 Score=29.10 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 220 (239)
.-.|..||.+.+.. ++||++||.++..+.-
T Consensus 33 ~~qA~kALKat~~N------vErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 33 YECVLRAMKKKGEN------IEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHHCSC------HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCCCC
Confidence 44677888887654 7899999999987753
No 66
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=82.17 E-value=4.8 Score=36.15 Aligned_cols=121 Identities=9% Similarity=0.014 Sum_probs=63.5
Q ss_pred CcchHHHHHHHH---HhcCCCCcccCCCCChHHHHhhhhHHhh---cc---cCCccee-------eccCCCChhhhhhhc
Q 026400 49 SDCSSESFVCCL---HLSTMPPEIVGEKMEPERFYDAANFMLY---IQ---SKTGGIT-------GWEPAGAPSWIELLN 112 (239)
Q Consensus 49 ~d~Ta~~l~aL~---~~~~~~~~~~~~~~~~~~i~~av~~Ll~---~Q---~~dGgw~-------~~~~~~~~~~~~~~~ 112 (239)
+-|.+.++.||+ ..+. .+...+..+||.. .| +++|.|. -|..+.+...
T Consensus 53 ~RDaa~t~~aL~~~~~~G~-----------~~~a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vdG~~~~----- 116 (472)
T 1gai_A 53 TRDSGLVIKTLVDLFRNGD-----------TDLLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYT----- 116 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBCC-----
T ss_pred hhhHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccCCCccC-----
Confidence 568899999998 5542 2445566677766 34 7888874 2333322100
Q ss_pred hhhhhhhhhccCCCccc-----hHHHHHHHHHhhhhCCC-CchhhhHHHHHHHHHHHHhcccCC--CCccCCCCcchhhH
Q 026400 113 PIEFLDEVIIEHDYVEC-----TASALKAMTLFQKLYPK-HKKNEVNNFITNGVKFTEDSQKLD--GSWYGTWGVCFIYS 184 (239)
Q Consensus 113 ~~e~~~~~~~~~~~~~~-----Ta~~l~aL~~~~~~~~~-~~~~~~~~~i~ra~~~L~~~Q~~d--G~w~g~~g~~~~~~ 184 (239)
. -+..+-.+. ++.++.++. +...... .-...+-+.|++.++||.+.-+.. |-|-.+ +..++|.
T Consensus 117 ------~-~w~~~Q~D~~g~ra~~~~~~~~~-l~~~g~~~~~~~~~w~~i~~~l~~v~~~w~~pd~dlWEer-~g~~~~T 187 (472)
T 1gai_A 117 ------G-SWGRPQRDGPALRATAMIGFGQW-LLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGYDLWEEV-NGSSFFT 187 (472)
T ss_dssp ------S-CCSCCCTHHHHHHHHHHHHHHHH-HHHTTCHHHHHHTHHHHHHHHHHHHHHHTTSCEECTTSCC-EEEEHHH
T ss_pred ------C-cCCCccccccchhHHHHHHHHHH-HHHcCCccccchhHHHHHHHHHHHHHHhcCCCCCCCCccc-CCCCHHH
Confidence 0 011222344 444444433 2111000 001124567999999998876643 455322 2346677
Q ss_pred HHHHHHHHHH
Q 026400 185 TWWAISGLVA 194 (239)
Q Consensus 185 T~~al~aL~~ 194 (239)
.+++..||.+
T Consensus 188 ~~~~~~AL~~ 197 (472)
T 1gai_A 188 IAVQHRALVE 197 (472)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 67
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.99 E-value=2.8 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=21.8
Q ss_pred HHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC
Q 026400 187 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 187 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 220 (239)
..+.||.+.+.. +++|++||++.+...|
T Consensus 36 an~~AL~at~Gn------ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 36 ANLQALIATDGD------TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence 347788887654 6899999999987665
No 68
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=76.82 E-value=14 Score=34.13 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhh--CCCCchhhhHHHHHHHHHHHHhccc---CCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHH
Q 026400 130 TASALKAMTLFQKL--YPKHKKNEVNNFITNGVKFTEDSQK---LDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLA 204 (239)
Q Consensus 130 Ta~~l~aL~~~~~~--~~~~~~~~~~~~i~ra~~~L~~~Q~---~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~ 204 (239)
++..+.+|+..... ++.+...+...+.+++.+|+.+... .+|. .+...-|...+|+.-|..+-. +...
T Consensus 252 agl~aAALA~Asrvf~d~~~~a~~~L~aA~~a~~fa~~~~~~y~~~g~----~~~~De~~~~WAA~eLy~ATg---d~~Y 324 (586)
T 3h7l_A 252 GGVAIAALAAASRLGVHGEYDQQKYRNAAENGYWHLKEHNTQYLNDGE----ENIIDEYCALLASVELFKATK---ETRY 324 (586)
T ss_dssp HHHHHHHHHHHTTSSSCSSSCHHHHHHHHHHHHHHHHHHHHHHSTTSC----CCHHHHHHHHHHHHHHHHHHC---CHHH
T ss_pred HHHHHHHHHHHhcccCCCCcChHHHHHHHHHHHHHHHhcCccccCCCC----ccchhHHHHHHHHHHHHHHhC---CHHH
Confidence 45566777776554 4555556778889999999988743 2332 121222333555555555422 2344
Q ss_pred HHHHH---HHHHhccCCC
Q 026400 205 IRKAT---DFLLNIQCDD 219 (239)
Q Consensus 205 i~~a~---~~L~~~Q~~d 219 (239)
.+.+. +.|..++.++
T Consensus 325 L~~a~~~a~~l~~~~~~~ 342 (586)
T 3h7l_A 325 LEESRLWAQRLVARQMSD 342 (586)
T ss_dssp HHHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 44444 3456566443
No 69
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=76.61 E-value=36 Score=29.35 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCc-chhcCCCCCCcccccCCCCCCCCCcch------HHHHHHHHHhcCCCCcccCCCCC
Q 026400 3 PILMKAHDFLKNSQVTDNPQGDF-RSMFRHISKGGWTFSDKDHGLPVSDCS------SESFVCCLHLSTMPPEIVGEKME 75 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~~-~~~~~~~~~ggw~~~~~~~~~~~~d~T------a~~l~aL~~~~~~~~~~~~~~~~ 75 (239)
+.-.++.+++++...+++ |.. ..++-+...|.+.....-.++ .|+. |..+.+|+.+-+. .+.+.+
T Consensus 171 ~~A~~~a~~~l~~~~r~d--gs~~h~~~~D~~tG~~~~~~t~qG~--~dds~WaRGqAw~i~gl~~ly~~----T~d~~y 242 (377)
T 2ahf_A 171 RVAEAHALKSRRFLVRGD--DSSYHTFYFDPENGNAIRGGTHQGN--TDGSTWTRGQAWGIYGFALNSRY----LGNADL 242 (377)
T ss_dssp HHHHHHHHHHHHHTBBTT--SCBCSEEEECTTTCCEEEEECSSSS--STTSCBHHHHHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCCeeeCCCcCCc--CCcchhHHHHHHHHHHHHHHHHH----HCChHH
Confidence 445677889999887642 322 222212223333111111233 4455 7777777775431 122223
Q ss_pred hHHHHhhhhHHhhcccCCcc
Q 026400 76 PERFYDAANFMLYIQSKTGG 95 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGg 95 (239)
-+...+..++++.....+|+
T Consensus 243 L~~A~~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 243 LETAKRMARHFLARVPEDGV 262 (377)
T ss_dssp HHHHHHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHHHHHHhhHHhCC
Confidence 34455567899998865666
No 70
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=76.30 E-value=7.2 Score=33.84 Aligned_cols=101 Identities=9% Similarity=-0.012 Sum_probs=58.6
Q ss_pred cchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhc-ccCC-cceeeccCCCChhhhhhhchhhhhhhhhccCCCc
Q 026400 50 DCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKT-GGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYV 127 (239)
Q Consensus 50 d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~d-Ggw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 127 (239)
-+++..+-++..+.+. .+.+.+.+.+.++++||++. ..++ |||..--.++.+ .....+.
T Consensus 52 ~~n~r~i~~~a~a~~~----~g~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~---------------~~~~~~l 112 (402)
T 3gt5_A 52 VSSTRFVFNYAMAYLQ----FGTAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRV---------------EDDTNHC 112 (402)
T ss_dssp HHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHTTBCTTTSCBCSEEETTEE---------------EECCEEH
T ss_pred HHHHHHHHHHHHHHHh----hCChHHHHHHHHHHHHHHHhCccCCCCcEEEEeeCCCC---------------CcCCcch
Confidence 3578888888765431 13344677888999999874 4556 888521122111 0011234
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcc-cCC-CCc
Q 026400 128 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-KLD-GSW 173 (239)
Q Consensus 128 ~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q-~~d-G~w 173 (239)
+.-+.+|.+|+.+... . ..+..+.+.+..++|.+.- .+. |++
T Consensus 113 yd~Af~i~al~~~~~t-g---d~~~l~~A~~l~~~i~~~f~d~~~G~~ 156 (402)
T 3gt5_A 113 YGLAFVMLAYSCGLKV-G---IKQAREWMDETWCLLERHFWDAEYGLY 156 (402)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTHHHHHHHHHHHHHHHTEETTTTEE
T ss_pred HHHHHHHHHHHHHHHh-C---ChhHHHHHHHHHHHHHHHhcCCcCCCc
Confidence 5577888888875432 1 1233566777888888764 333 544
No 71
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=74.83 E-value=15 Score=31.97 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=75.2
Q ss_pred HHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHH
Q 026400 78 RFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFIT 157 (239)
Q Consensus 78 ~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ 157 (239)
.+..-+.|-.....+. ||...+.+..+ .+.. +.....++..|.+++.+.. .. ..+..+.++
T Consensus 16 ~~~~ll~f~~~~~d~~-GF~~ld~~g~~-----~~~~---------~k~~~~nar~i~~~a~a~~-~g---~~~~l~~A~ 76 (421)
T 2zbl_A 16 ETDRIFNFGKNAVVPT-GFGWLGNKGQI-----KEEM---------GTHLWITARMLHVYSVAAS-MG---RPGAYDLVD 76 (421)
T ss_dssp HHHHHHHHHGGGEETT-EECCBCTTSCB-----CGGG---------CEEHHHHHHHHHHHHHHHH-TT---CTTHHHHHH
T ss_pred HHHHHHHHHHhCcCCC-CcceECCCCCC-----CCCc---------hhhHHHHHHHHHHHHHHHH-cC---ChhHHHHHH
Confidence 3455556666666666 67544433211 1111 1123468888888888754 22 234567899
Q ss_pred HHHHHHHhcccC-C-CCccCCC---C----cchhhHHHHHHHHHHHc---CccCCCHHHHHHHHHHHHhccC-C-CCccC
Q 026400 158 NGVKFTEDSQKL-D-GSWYGTW---G----VCFIYSTWWAISGLVAA---EKTYSNCLAIRKATDFLLNIQC-D-DGGWG 223 (239)
Q Consensus 158 ra~~~L~~~Q~~-d-G~w~g~~---g----~~~~~~T~~al~aL~~~---g~~~~~~~~i~~a~~~L~~~Q~-~-dGgWg 223 (239)
++++||.+.... + |+|.... | ....|.-++++.++... +.+. ..+.+++.++++.+.-. + +|||-
T Consensus 77 ~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~~~tg~~~-~l~~a~~~~~~l~~~~~d~~~Ggf~ 155 (421)
T 2zbl_A 77 HGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPE-ARKLLDYTIEVIEKYFWSEEEQMCL 155 (421)
T ss_dssp HHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred HHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHHhccCCCCCee
Confidence 999999987543 3 7886332 1 13456667777777653 3332 35677788889987553 3 68775
Q ss_pred CC
Q 026400 224 ES 225 (239)
Q Consensus 224 ~~ 225 (239)
..
T Consensus 156 ~~ 157 (421)
T 2zbl_A 156 ES 157 (421)
T ss_dssp CE
T ss_pred ee
Confidence 43
No 72
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=73.66 E-value=43 Score=29.13 Aligned_cols=168 Identities=11% Similarity=0.052 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCC-cchhcCCCCCCcccccCCCCCCCCCcch------HHHHHHHHHhcCCCCcccCCCCC
Q 026400 3 PILMKAHDFLKNSQVTDNPQGD-FRSMFRHISKGGWTFSDKDHGLPVSDCS------SESFVCCLHLSTMPPEIVGEKME 75 (239)
Q Consensus 3 ~~l~~a~~~l~~~Q~~~~~~g~-~~~~~~~~~~ggw~~~~~~~~~~~~d~T------a~~l~aL~~~~~~~~~~~~~~~~ 75 (239)
+.-.+..+++++...+++ |. +..++-+...|.+.....-+++ .|+. |.++.+|+.+-+. .+.+.+
T Consensus 196 ~~A~~ha~~~l~~~~r~d--gs~~h~~~~d~~~G~~~~~~t~qGy--~dds~WaRGqAw~i~gl~~lY~~----T~d~~y 267 (397)
T 2zzr_A 196 QVAVNHFYASANNVVRDD--SSAFHTFYFDPETGEPLKGVTRQGY--SDESSWARGQAWGIYGIPLSYRK----MKDYQQ 267 (397)
T ss_dssp HHHHHHHHHHHHHTBCTT--SCBCSEEEECTTTCCEEEEECTTSS--STTSCBHHHHHHHHHHHHHHHHH----HCCHHH
T ss_pred HHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCCcccCCccccc--CcchhhHHHHHHHHHHHHHHHHH----HCCHHH
Confidence 344567888888887642 32 1221111112433211111233 4565 8888888875431 122223
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHH--HHHHHhhhhCCCCchhh--
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASAL--KAMTLFQKLYPKHKKNE-- 151 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l--~aL~~~~~~~~~~~~~~-- 151 (239)
-+...+..++++..-..||+ +.|...... .+ .. ..+.++.++ .+|..+....++....+
T Consensus 268 L~~A~~la~~~l~~~~~d~~-pywdt~~~~-----~~---------~~--~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~ 330 (397)
T 2zzr_A 268 IILFKGMTNYFLNRLPEDKV-SYWDLIFTD-----GS---------GQ--PRDTSATATAVCGIHEMLKYLPEVDPDKET 330 (397)
T ss_dssp HHHHHHHHHHHHHTCCTTSC-CBSBTTCCT-----TS---------CC--CBCHHHHHHHHHHHHHHHTTSCTTCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHhCC-ccccCCCCC-----CC---------CC--cCCCCHHHHHHHHHHHHHHhcCccchhhHH
Confidence 33344445778776644454 334432110 00 01 112333333 33444443333222233
Q ss_pred hHHHHHHHHHHHHhcc------cCCCCc-------cCCC--CcchhhHHHHHHHHHHHc
Q 026400 152 VNNFITNGVKFTEDSQ------KLDGSW-------YGTW--GVCFIYSTWWAISGLVAA 195 (239)
Q Consensus 152 ~~~~i~ra~~~L~~~Q------~~dG~w-------~g~~--g~~~~~~T~~al~aL~~~ 195 (239)
..++..+.++-|.+.= +.+|-- +..- .++.+|+-.+-+.||.+.
T Consensus 331 Y~~~A~~~l~~l~~~y~~~~~~~~~glL~h~~~~~~~~~~~d~~~~~gDYy~~Eal~r~ 389 (397)
T 2zzr_A 331 YKYAMHTMLRSLIEQYSNNELIAGRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRF 389 (397)
T ss_dssp HHHHHHHHHHHHHHHTBCCCCCTTCCSBCCEEEETTTTEEEEECBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCceeeeceeeCCCCCCCCCCcchHHHHHHHHHHHH
Confidence 6677788888777653 122211 1100 134567777888888765
No 73
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=71.30 E-value=14 Score=31.97 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=73.6
Q ss_pred CCCChHHHHhhhhHHhhcccCCcc-eeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchh
Q 026400 72 EKMEPERFYDAANFMLYIQSKTGG-ITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKN 150 (239)
Q Consensus 72 ~~~~~~~i~~av~~Ll~~Q~~dGg-w~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~ 150 (239)
.+.+.+.+.++.++|...=++.+| +.+|.....+.. . ......|-..|.+|..+++...+ .
T Consensus 106 ~~~~~~~~~~aA~~L~~r~~~~~g~i~sw~~~~~~~~-----~----------~~~iID~mmni~~L~~A~~~~gd---~ 167 (377)
T 2ahf_A 106 DESARKLALDAADVLMRRWRADAGIIQAWGPKGDPEN-----G----------GRIIIDCLLNLPLLLWAGEQTGD---P 167 (377)
T ss_dssp CHHHHHHHHHHHHHHHTTEETTTTEECCBSSTTCTTT-----T----------TEEEGGGGGGHHHHHHHHHHHCC---T
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEeccCCCCCCC-----C----------ceEEechHHHHHHHHHHHHHhCC---H
Confidence 334667788889999988887744 466653111100 0 01111233346677665543221 2
Q ss_pred hhHHHHHHHHHHHHhcc-cCCCCccCC---------C-------C----cchhhHHHHHHHHHHHcCccCCC---HHHHH
Q 026400 151 EVNNFITNGVKFTEDSQ-KLDGSWYGT---------W-------G----VCFIYSTWWAISGLVAAEKTYSN---CLAIR 206 (239)
Q Consensus 151 ~~~~~i~ra~~~L~~~Q-~~dG~w~g~---------~-------g----~~~~~~T~~al~aL~~~g~~~~~---~~~i~ 206 (239)
+..++..+.++++++.. ++||+..-. . | .+..-+.++++.||...-..-.+ -+..+
T Consensus 168 ~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~ 247 (377)
T 2ahf_A 168 EYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAK 247 (377)
T ss_dssp HHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 34567788888888766 455654211 0 1 12234567887777664211001 23566
Q ss_pred HHHHHHHhccCCCCc
Q 026400 207 KATDFLLNIQCDDGG 221 (239)
Q Consensus 207 ~a~~~L~~~Q~~dGg 221 (239)
+..+|++++..+||+
T Consensus 248 ~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 248 RMARHFLARVPEDGV 262 (377)
T ss_dssp HHHHHHHTTCCTTSS
T ss_pred HHHHHHHHhhHHhCC
Confidence 778999999977887
No 74
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=68.01 E-value=61 Score=28.18 Aligned_cols=164 Identities=11% Similarity=0.080 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCccc-ccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHH
Q 026400 2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWT-FSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFY 80 (239)
Q Consensus 2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~-~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~ 80 (239)
++.+.++.++|...=++. .|...+ |. +.+.+. ++...|+-..|.+|..+++. .|.+.+.+...
T Consensus 136 ~~~~~~aA~~L~~r~~~~--~g~iqs---------w~~~~~~~~-~~~iID~~mni~~L~~A~~~----~gd~~y~~~A~ 199 (397)
T 2zzr_A 136 LEATIKAADKLMERYQEK--GGFIQA---------WGELGYKEH-YRLIIDCLLNIQLLFFAYEQ----TGDEKYRQVAV 199 (397)
T ss_dssp HHHHHHHHHHHHTTEETT--TTEECC---------SSSTTCGGG-CEEETTHHHHTHHHHHHHHH----HCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcC--CCEEEe---------cccCCCCCC-CceeechHhHHHHHHHHHHH----hCCHHHHHHHH
Confidence 567888999998755442 222221 32 111222 35667888888888876542 23344556666
Q ss_pred hhhhHHhhcccC-Cccee-e--ccCCCChhhhhhhchhhhhhhhhccCCCccc------hHHHHHHHHHhhhhCCCCchh
Q 026400 81 DAANFMLYIQSK-TGGIT-G--WEPAGAPSWIELLNPIEFLDEVIIEHDYVEC------TASALKAMTLFQKLYPKHKKN 150 (239)
Q Consensus 81 ~av~~Ll~~Q~~-dGgw~-~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~------Ta~~l~aL~~~~~~~~~~~~~ 150 (239)
+..+++++..-. ||+-. . |++..+.. . ....-+.+.+. .|.++.+|..+.+... ..
T Consensus 200 ~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~----------~-~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~---d~ 265 (397)
T 2zzr_A 200 NHFYASANNVVRDDSSAFHTFYFDPETGEP----------L-KGVTRQGYSDESSWARGQAWGIYGIPLSYRKMK---DY 265 (397)
T ss_dssp HHHHHHHHHTBCTTSCBCSEEEECTTTCCE----------E-EEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHC---CH
T ss_pred HHHHHHHHhCcCCCCCeEEEEEeeCCCCCc----------c-cCCcccccCcchhhHHHHHHHHHHHHHHHHHHC---CH
Confidence 677888777654 45442 2 22211110 0 00001223333 3778888777543221 23
Q ss_pred hhHHHHHHHHHHHHhcccCCCC-ccCC-C-----CcchhhHHHHHHHHHHHc
Q 026400 151 EVNNFITNGVKFTEDSQKLDGS-WYGT-W-----GVCFIYSTWWAISGLVAA 195 (239)
Q Consensus 151 ~~~~~i~ra~~~L~~~Q~~dG~-w~g~-~-----g~~~~~~T~~al~aL~~~ 195 (239)
+..+...+..++++++-..||. +... - .+....+++.++.+|...
T Consensus 266 ~yL~~A~~la~~~l~~~~~d~~pywdt~~~~~~~~~~D~Sa~aiaA~~Ll~L 317 (397)
T 2zzr_A 266 QQIILFKGMTNYFLNRLPEDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEM 317 (397)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCCBSBTTCCTTSCCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhCCccccCCCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 3455667778888888766665 3111 0 112355667777777664
No 75
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=67.79 E-value=15 Score=33.84 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=52.5
Q ss_pred cchHHHHHHHH----HhhhhCCCCchhhhHHHHHHHHHHHHh---cc---cCCCCcc------------------CCCCc
Q 026400 128 ECTASALKAMT----LFQKLYPKHKKNEVNNFITNGVKFTED---SQ---KLDGSWY------------------GTWGV 179 (239)
Q Consensus 128 ~~Ta~~l~aL~----~~~~~~~~~~~~~~~~~i~ra~~~L~~---~Q---~~dG~w~------------------g~~g~ 179 (239)
...+.++++|. ..|. .+..++..+||.. .| ++||.|. +.|+.
T Consensus 53 RDaa~t~~aL~~~~~~~G~----------~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~~~w~~ 122 (599)
T 2vn4_A 53 RDSALVFKNLIDRFTETYD----------AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWGR 122 (599)
T ss_dssp HHHHHHHHHHHHHHHHSBC----------HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCCSCCSC
T ss_pred hhHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCccccCcCCC
Confidence 44777788877 4442 2456778889874 77 8999884 23432
Q ss_pred c--hhhH---HHHHHHHH--HHcCccC----CCHHHHHHHHHHHHhccCCC--CccCCC
Q 026400 180 C--FIYS---TWWAISGL--VAAEKTY----SNCLAIRKATDFLLNIQCDD--GGWGES 225 (239)
Q Consensus 180 ~--~~~~---T~~al~aL--~~~g~~~----~~~~~i~~a~~~L~~~Q~~d--GgWg~~ 225 (239)
. ..++ +++.+.++ ...|... ...+.|+++++|+....+.. |=|.+.
T Consensus 123 ~Q~D~~glr~~~~~~~~~~~~~~g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEer 181 (599)
T 2vn4_A 123 PQRDGPALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEV 181 (599)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSCC
T ss_pred eeccccchhHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeeec
Confidence 1 2222 33433332 3333320 02578999999999888753 447665
No 76
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.94 E-value=7.3 Score=25.58 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=21.3
Q ss_pred HHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC
Q 026400 187 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 187 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 220 (239)
.++.||.+.+.. +++|++||++.+.++-
T Consensus 46 ~~~~AL~~t~Gn------ve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 46 ANLQALVATDGD------IHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhCCCCCC
Confidence 457788877654 6899999999887654
No 77
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=65.64 E-value=27 Score=34.40 Aligned_cols=74 Identities=14% Similarity=0.296 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHHhcccC--CCCccCC----C-------------CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHH
Q 026400 150 NEVNNFITNGVKFTEDSQKL--DGSWYGT----W-------------GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATD 210 (239)
Q Consensus 150 ~~~~~~i~ra~~~L~~~Q~~--dG~w~g~----~-------------g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~ 210 (239)
.+..+.+.+++-=|+..+.+ .|+.-.. | .-++.--+++++++|...|.. +..++.++
T Consensus 280 ~~~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~~----e~A~~~l~ 355 (1020)
T 1ulv_A 280 GALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDE----EAAARGVE 355 (1020)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCCH----HHHHHHHH
Confidence 34566788888888887765 2543211 1 112334577888888888753 66789999
Q ss_pred HHHhcc-CCCCccCCCCC
Q 026400 211 FLLNIQ-CDDGGWGESYL 227 (239)
Q Consensus 211 ~L~~~Q-~~dGgWg~~~~ 227 (239)
||.+.| +++|.|-..+.
T Consensus 356 ~L~~~Q~~~~G~~~~~y~ 373 (1020)
T 1ulv_A 356 WLFTYQQQPDGHFPQTSR 373 (1020)
T ss_dssp HHHHHTCCTTSCCCSCBC
T ss_pred HHHHHhcCCCCCeeeEEe
Confidence 999999 99999876553
No 78
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=65.14 E-value=40 Score=28.66 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=76.3
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHH-hhcccC--CcceeeccCCCChhhhhhhchhhhhhhhhccCC
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFM-LYIQSK--TGGITGWEPAGAPSWIELLNPIEFLDEVIIEHD 125 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~L-l~~Q~~--dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 125 (239)
.||-+...++++.+-+. .+.+.+.+...+..++| ...-++ .||+. |...... +.
T Consensus 91 ~DD~a~~~la~~~aye~----t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~-W~~~~~~-----------~k------- 147 (349)
T 3k7x_A 91 YDDMLWNALAAYRLYKA----TGKSIYLEDAQLVWQDLVDTGWNDIMGGGFA-WRRPQMY-----------YK------- 147 (349)
T ss_dssp HHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHTBCSGGGSCBE-EETTEEE-----------EE-------
T ss_pred ccHHHHHHHHHHHHHHH----HCCchHHHHHHHHHHHHHHhCCCCCCCCceE-ecCCCcc-----------cc-------
Confidence 47888877777765432 12333444445556787 454443 37774 5432100 10
Q ss_pred CccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcc-cCCCCccCC----C-C-----cchhhHHHHHHHHHHH
Q 026400 126 YVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ-KLDGSWYGT----W-G-----VCFIYSTWWAISGLVA 194 (239)
Q Consensus 126 ~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q-~~dG~w~g~----~-g-----~~~~~~T~~al~aL~~ 194 (239)
.+-.++..+.+|+.+..... ..+..+..++..+|+.+.- +++|..... . | ..++|+.++.|.++..
T Consensus 148 naisN~~~~~~la~l~~~tg---d~~Yl~~A~~~~~w~~~~l~d~~g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~ 224 (349)
T 3k7x_A 148 NTPVNAPFIILSCWLYNELN---ETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLE 224 (349)
T ss_dssp EHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHBCTTSCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCCCCCeEecCCccCCCCccCCcCeeeHHHHHHHHHHHH
Confidence 11135556666666544322 2345678899999988743 455544211 1 1 1468888998888765
Q ss_pred c----CccCCCHHHHHHHHHHHHhccCCCCc
Q 026400 195 A----EKTYSNCLAIRKATDFLLNIQCDDGG 221 (239)
Q Consensus 195 ~----g~~~~~~~~i~~a~~~L~~~Q~~dGg 221 (239)
. +.+. -.+.+++.++++++.--++|=
T Consensus 225 LY~~T~d~~-yl~~a~~l~~~~~~~f~~~gi 254 (349)
T 3k7x_A 225 LYRITKEAI-YLDTANKTAAISLKELTEDGI 254 (349)
T ss_dssp HHHHHCCHH-HHHHHHHHHHHHHHHHEETTE
T ss_pred HHHhhCcHH-HHHHHHHHHHHHHHHhccCCc
Confidence 4 2211 123344455555554444543
No 79
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=64.76 E-value=11 Score=35.42 Aligned_cols=72 Identities=14% Similarity=0.243 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhcccC--CCCccCC--------------C--CcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHH
Q 026400 152 VNNFITNGVKFTEDSQKL--DGSWYGT--------------W--GVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLL 213 (239)
Q Consensus 152 ~~~~i~ra~~~L~~~Q~~--dG~w~g~--------------~--g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~ 213 (239)
..+.+.+++.-|+..+.+ .|..... | +-+.+--+++++++|..+|. .+..++.++||.
T Consensus 294 ~~~~~~rs~~~Lk~l~~~~~~G~iiAs~t~~~~e~~~~~~~~dY~~~W~RD~~~~~~al~~~G~----~~~a~~~l~~l~ 369 (684)
T 1lf6_A 294 ANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGD----VDSANRSLDYLA 369 (684)
T ss_dssp CCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCccEEeecCCCCccccCCCCCCCCEEEeccHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence 356788888888887763 5654211 1 11223346777888888874 366789999999
Q ss_pred hccCCCCccCCCCC
Q 026400 214 NIQCDDGGWGESYL 227 (239)
Q Consensus 214 ~~Q~~dGgWg~~~~ 227 (239)
+.|.++|+|-..+.
T Consensus 370 ~~q~~~G~~~~~~~ 383 (684)
T 1lf6_A 370 KVVKDNGMIPQNTW 383 (684)
T ss_dssp HHHHHHSSCCSCBC
T ss_pred hhcCCCCCccccee
Confidence 99999999865443
No 80
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.14 E-value=9.4 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
...|..||...+.. .+++|++||++++.+
T Consensus 33 ~~~a~~AL~~t~~~-----nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 33 RARAQKALASTGGR-----SVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHHTTTS-----CHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHcCCC-----CHHHHHHHHHhCCCC
Confidence 34567777776541 268999999998865
No 81
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=61.29 E-value=39 Score=29.30 Aligned_cols=142 Identities=8% Similarity=-0.028 Sum_probs=75.5
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccC--Ccceee-ccCCCChhhhhhhchhhhhhhhhccCCCc
Q 026400 51 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSK--TGGITG-WEPAGAPSWIELLNPIEFLDEVIIEHDYV 127 (239)
Q Consensus 51 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~--dGgw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 127 (239)
+++..+.++..+.. .|.+.+.+.+.++++||++.-.. .|||.. .+.+..+ + +....
T Consensus 52 ~nar~i~~~a~a~~-----~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~------~----------~~k~l 110 (421)
T 2zbl_A 52 ITARMLHVYSVAAS-----MGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVV------D----------ASKQG 110 (421)
T ss_dssp HHHHHHHHHHHHHH-----TTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETTEEE------E----------CCEEH
T ss_pred HHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCCCCc------C----------CchhH
Confidence 67888888877653 23455677889999999876433 388852 2222111 0 00123
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhccc-C-CCCccCCCC--------cchhhHHHHHHHHHHHcCc
Q 026400 128 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQK-L-DGSWYGTWG--------VCFIYSTWWAISGLVAAEK 197 (239)
Q Consensus 128 ~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~-~-dG~w~g~~g--------~~~~~~T~~al~aL~~~g~ 197 (239)
+.-+.++.+|..+ +... ..+..+.+.+.++++.+.-. + .|+|..... .....+.+.++.+|..+..
T Consensus 111 yd~Af~i~al~~~-~~tg---~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~~~~~~~~~n~~m~~~~al~~l~~ 186 (421)
T 2zbl_A 111 YQHFFALLGAASA-VTTG---HPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYD 186 (421)
T ss_dssp HHHHHHHHHHHHH-HTTT---CTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSCSBCSCEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhC---CccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCCcccccCCCcHHHHHHHHHHHHHH
Confidence 3457788888774 3211 12335677788888887553 3 677653321 1112222334555554322
Q ss_pred cCCCH---HHHHHHHHHHHhccC
Q 026400 198 TYSNC---LAIRKATDFLLNIQC 217 (239)
Q Consensus 198 ~~~~~---~~i~~a~~~L~~~Q~ 217 (239)
...+. +..++.++++.....
T Consensus 187 ~tgd~~~~~~A~~~~~~~~~~~~ 209 (421)
T 2zbl_A 187 VTHDKKWLDRALRIASVIIHDVA 209 (421)
T ss_dssp TTCCTHHHHHHHHHHHHHCCCCC
T ss_pred hhCCHHHHHHHHHHHHHHHHHhc
Confidence 11122 344567777665543
No 82
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=60.96 E-value=10 Score=24.83 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD 219 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~d 219 (239)
...|+.||...+.. +++|++||++.|.++
T Consensus 43 r~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 43 RTQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 34577788877643 689999999988765
No 83
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=60.63 E-value=12 Score=24.40 Aligned_cols=28 Identities=32% Similarity=0.236 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
...|..||...+.. +++|++||++++..
T Consensus 43 ~~~a~~AL~~t~~n------ve~Ave~L~~~~~d 70 (73)
T 1wiv_A 43 EDVARKALKASGGD------IEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHHTTSC------HHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHhCCCC
Confidence 44567788877643 68999999998864
No 84
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.03 E-value=11 Score=23.74 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dG 220 (239)
...|+.||.+.+.. +++|++||++.+.+..
T Consensus 23 ~~~a~~AL~~~~~n------ve~A~e~L~~~~~~~~ 52 (63)
T 1wji_A 23 KEASRQALMDNGNN------LEAALNVLLTSNKQKP 52 (63)
T ss_dssp HHHHHHHHHHTTSC------HHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHCCCCcc
Confidence 34567788877543 6899999999876543
No 85
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.23 E-value=9.9 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
...|..||...+.. .+++|++||++++.+
T Consensus 23 ~~~a~~AL~~t~n~-----~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 23 VHTALKALAATGRK-----TAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 45677888877642 268999999999863
No 86
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=58.18 E-value=11 Score=22.82 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhcc
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQ 216 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q 216 (239)
...++.||...+.. +++|++||++.+
T Consensus 26 ~~~~~~AL~~t~gn------ve~Ave~L~~~~ 51 (53)
T 2knz_A 26 REANLQALIATGGD------INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHcC
Confidence 34567788877643 689999999875
No 87
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=57.90 E-value=55 Score=29.66 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=43.2
Q ss_pred hHHHHhhhhHHhhcccCC-cceee-ccCCCChhhhh--hhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCch--
Q 026400 76 PERFYDAANFMLYIQSKT-GGITG-WEPAGAPSWIE--LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKK-- 149 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~d-Ggw~~-~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~-- 149 (239)
.+.|+=+++||++||.++ |+.-. .. + ..|-. .+| .+.-....+-+.....++.+..+|+.....+...+.
T Consensus 191 ldeikwg~D~llk~~~~~~g~~y~~v~-~--~~w~g~~~~P-e~~~~~R~~~~~~t~~~~~~AAalA~as~vf~~~D~~y 266 (537)
T 3gzk_A 191 LEVAREEIAWLLTMQDPATGGVYHKVT-T--PSFPPLDTRP-EDDDAPLVLSPISYAATATFCAAMAHAALVYRPFDPAL 266 (537)
T ss_dssp HHHHHHHHHHHHHTBCTTTCCBBSEEE-C--SSCCCTTCCG-GGCCSCEEECCBCHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEec-C--CCcCCCCcCc-ccCCCcceEeecCCcHHHHHHHHHHHHHHhhcccCHHH
Confidence 455666789999999854 65521 10 0 01100 011 110000000111122355556666664433322222
Q ss_pred -hhhHHHHHHHHHHHHhccc
Q 026400 150 -NEVNNFITNGVKFTEDSQK 168 (239)
Q Consensus 150 -~~~~~~i~ra~~~L~~~Q~ 168 (239)
.++.++.+++.+|+.+...
T Consensus 267 A~~~L~~A~~~~~fa~~~~~ 286 (537)
T 3gzk_A 267 SSCCADAARRAYAWLGAHEM 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 5567788899999998754
No 88
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=57.02 E-value=21 Score=31.10 Aligned_cols=40 Identities=5% Similarity=0.079 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccC
Q 026400 133 ALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYG 175 (239)
Q Consensus 133 ~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g 175 (239)
++.+|..+.. ....+++.+.++++++|+.+.+.++|.|+.
T Consensus 236 I~~~Ll~~~~---~~~~~~~~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 236 IYYYLMQPSL---QVSQGKLHSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp HHHHHTCGGG---CCCHHHHHHTHHHHHHHHHHTCCTTSCCCS
T ss_pred HHHHHHHHHh---hcChHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 3444544432 223455678899999999999999999975
No 89
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=56.03 E-value=51 Score=28.08 Aligned_cols=107 Identities=7% Similarity=-0.101 Sum_probs=56.2
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhc-ccCCc--ceee-ccCCCChhhhhhhchhhhhhhhhccC
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYI-QSKTG--GITG-WEPAGAPSWIELLNPIEFLDEVIIEH 124 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~-Q~~dG--gw~~-~~~~~~~~~~~~~~~~e~~~~~~~~~ 124 (239)
.-++|..|.++..+.+.-+ ..+.+.+.+.+.++++||++. ..++| ||.. .+.+..+ +. ..
T Consensus 55 l~~nar~l~~~a~a~~~~~-~~~~~~~l~~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~------~~---------~~ 118 (402)
T 1fp3_A 55 VWLQGRQVWMYCRLYRKLE-RFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRP------VK---------VQ 118 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCE------EE---------CC
T ss_pred hhhhHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHhccCcCCCCceEEEECCCCCc------cc---------cc
Confidence 3456777777765432100 002333567788999999987 55554 7752 2222211 00 01
Q ss_pred CCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcc--cCCCCcc
Q 026400 125 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ--KLDGSWY 174 (239)
Q Consensus 125 ~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q--~~dG~w~ 174 (239)
.+.+.-+.++.++..+.+...+ .+..+.+.+.++++++.. .+.|.|.
T Consensus 119 ~~lyd~af~~~a~~~~~~atgd---~~~~~~A~~l~~~~~~~~~d~~~G~f~ 167 (402)
T 1fp3_A 119 RSIFSECFYTMAMNELWRVTAE---ARYQSEAVDMMDQIVHWVREDPSGLGR 167 (402)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHTCGGGGCC
T ss_pred cchHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 2344567777777765443211 223445566666666654 4566663
No 90
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=55.86 E-value=54 Score=30.15 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhhhCCCCc------hhhhHHHHHHHHHHHHhcccCCCCcc
Q 026400 130 TASALKAMTLFQKLYPKHK------KNEVNNFITNGVKFTEDSQKLDGSWY 174 (239)
Q Consensus 130 Ta~~l~aL~~~~~~~~~~~------~~~~~~~i~ra~~~L~~~Q~~dG~w~ 174 (239)
|+.++..|..+.+..+... ..++.+.++=+++||+++|.++|.++
T Consensus 164 ~~~~~w~ll~~~~~~~~~~~~~~~~~~~lldE~rWg~D~llkm~~~~g~~y 214 (586)
T 3h7l_A 164 TPMVVWNILKGLSLLEGSEDIAAFTRTRLIEEALFGADFLVRMQNEKGFFY 214 (586)
T ss_dssp HHHHHHHHHHHHHHSTTSSSSCHHHHHHHHHHHHHHHHHHHHTBCTTSCBB
T ss_pred hhHHHHHHHHHHHHhhhhccCcccchHHHHHHHHHHHHHHHhcccCCCeEE
Confidence 3455555554444333321 35778889999999999999999764
No 91
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.70 E-value=13 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=18.5
Q ss_pred HHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 187 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 187 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
.++.||...+.. +++|++||++....
T Consensus 26 ~n~~AL~~~~Gd------v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 26 ANLQALIATGGD------VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCc
Confidence 346777776544 68999999987644
No 92
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.89 E-value=21 Score=22.49 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
...|..||...+.. .+++|++||++++..
T Consensus 23 ~~~a~~AL~~t~~~-----nve~A~ewLl~~~~d 51 (64)
T 1whc_A 23 RGRAEKALALTGNQ-----GIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHhCCCC
Confidence 35567788877422 278999999998754
No 93
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.77 E-value=23 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.003 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQC 217 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~ 217 (239)
...|..||...+.. +++|++||++++.
T Consensus 43 ~~~A~~AL~~t~gd------ve~A~e~L~sh~~ 69 (83)
T 1veg_A 43 TVVAEAALRVFGGN------VQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHTTTC------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCC
Confidence 34577788877643 7899999999876
No 94
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.81 E-value=28 Score=20.20 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCccCCCHHHHHHHHHHHHhc
Q 026400 186 WWAISGLVAAEKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 186 ~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 215 (239)
..+..||...+ . +++|++||+++
T Consensus 24 ~~a~~AL~~~~-n------~e~A~~~L~~h 46 (47)
T 2ekk_A 24 EHAMEALLNTS-T------MEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHSC-S------HHHHHHHHHTC
T ss_pred HHHHHHHHHcC-C------HHHHHHHHHcC
Confidence 45667777764 2 68999999875
No 95
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.40 E-value=25 Score=22.84 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
...|..||...+.. .+++|++||++++.+
T Consensus 23 ~~~a~~AL~~t~n~-----~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 23 MDACRKAVYYTGNS-----GAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 34567778877532 268999999998764
No 96
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=42.09 E-value=22 Score=20.81 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=15.7
Q ss_pred HHHHHHHHcCccCCCHHHHHHHHHHHHh
Q 026400 187 WAISGLVAAEKTYSNCLAIRKATDFLLN 214 (239)
Q Consensus 187 ~al~aL~~~g~~~~~~~~i~~a~~~L~~ 214 (239)
.++.||.+.+.. +++|++||++
T Consensus 24 ~~~~AL~~~~gn------v~~Ave~L~~ 45 (46)
T 2bwb_A 24 RNVAALRRSGGS------VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHc
Confidence 456777776544 5789999975
No 97
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=40.91 E-value=30 Score=23.06 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 186 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 186 ~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
..|..||...+.. .+++|++||++++..
T Consensus 44 ~~a~~AL~~t~n~-----n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 44 LHCQKAAINTSNA-----GVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHTTTC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-----CHHHHHHHHHhCCCc
Confidence 4567787777532 268999999998753
No 98
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.62 E-value=22 Score=22.19 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
...|..||...+.. +++|++||++++..
T Consensus 23 ~~~a~~AL~~t~~n------ve~A~e~L~~~~~d 50 (63)
T 2dak_A 23 RDQALKALRATNNS------LERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHHTTSC------SHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCC
Confidence 34567778776542 68999999998754
No 99
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.26 E-value=33 Score=22.82 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 186 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 186 ~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
..|..||...+.. +++|++||++++..
T Consensus 44 ~~a~~AL~~t~~n------ve~A~ewL~~~~~d 70 (83)
T 2dai_A 44 NRATKALQLNHMS------VPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHTTSC------HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHHCCCC
Confidence 4566777776432 68999999998754
No 100
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=39.44 E-value=27 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=16.4
Q ss_pred HHHHHHHHcCccCCCHHHHHHHHHHHHhc
Q 026400 187 WAISGLVAAEKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 187 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 215 (239)
.++.||.+.+.. +++|++||++.
T Consensus 34 ~~~~AL~~~~gn------ve~Ave~L~~~ 56 (58)
T 1wr1_B 34 RNVAALRRSGGS------VQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhC
Confidence 456777776544 57899999874
No 101
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=39.12 E-value=23 Score=21.27 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCccCCCHHHHHHHHHHHHhc
Q 026400 186 WWAISGLVAAEKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 186 ~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 215 (239)
..++.||...+.. +++|++||++.
T Consensus 28 ~~~~~AL~~t~gn------~e~A~e~L~~~ 51 (52)
T 2jy5_A 28 EANLQALIATGGD------INAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 4567777776543 67899999764
No 102
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=38.76 E-value=1.1e+02 Score=29.63 Aligned_cols=80 Identities=9% Similarity=-0.095 Sum_probs=45.0
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCC-chhhhHH
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKH-KKNEVNN 154 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~ 154 (239)
.+..++.++.|.+.|..||.++..-+... ....++-+...+.++..+.....+. --+++-+
T Consensus 594 ~~lar~~L~~l~~~Q~~dG~ip~~~p~~~------------------~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp 655 (956)
T 2okx_A 594 TEIVERCLNLVPGSADETPLYLDQVPSAW------------------SSVIPNWTFFWILACREYAAHTGNEAFAARIWP 655 (956)
T ss_dssp CHHHHHHHHHGGGGTTTCTTCCSBSSCSS------------------CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCcCccccccc------------------cCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46678889999999999999864322110 0001112222333333322221111 1133456
Q ss_pred HHHHHHHHHHhcccCCCCc
Q 026400 155 FITNGVKFTEDSQKLDGSW 173 (239)
Q Consensus 155 ~i~ra~~~L~~~Q~~dG~w 173 (239)
.++++++|+.+...++|-+
T Consensus 656 ~lk~~l~~~~~~~d~~GLl 674 (956)
T 2okx_A 656 AVKHTLTHYLEHIDDSGLL 674 (956)
T ss_dssp HHHHHHHHHHTTBCTTSSB
T ss_pred HHHHHHHHHHhcCCCCCCE
Confidence 8999999999887777754
No 103
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=37.82 E-value=33 Score=19.34 Aligned_cols=24 Identities=29% Similarity=0.251 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCccCCCHHHHHHHHHHHHhc
Q 026400 186 WWAISGLVAAEKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 186 ~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 215 (239)
..+..||...+.. +++|++||++.
T Consensus 19 ~~a~~AL~~~~~n------~e~A~~~L~~~ 42 (43)
T 2g3q_A 19 EEAHNALEKCNWD------LEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHTC
T ss_pred HHHHHHHHHhCcC------HHHHHHHHHcC
Confidence 4566777776533 67899999863
No 104
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=36.24 E-value=2.7e+02 Score=25.98 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=43.5
Q ss_pred HHHHHHhhhhCCCCchhhhHHHHHHHHHH----HHhcccCCCCccCCCCcchhhHHHHH----HHHHHHcCc----cCCC
Q 026400 134 LKAMTLFQKLYPKHKKNEVNNFITNGVKF----TEDSQKLDGSWYGTWGVCFIYSTWWA----ISGLVAAEK----TYSN 201 (239)
Q Consensus 134 l~aL~~~~~~~~~~~~~~~~~~i~ra~~~----L~~~Q~~dG~w~g~~g~~~~~~T~~a----l~aL~~~g~----~~~~ 201 (239)
+.+|..++-..|..+.. ...+++|++. |..+-.+||++... ++.|....... +..+...|. +..-
T Consensus 266 ~~aL~~agl~~pe~~~~--~~w~~~A~~~L~~el~~Qi~~DG~~~E~-Sp~Yh~~vL~~ll~~~~la~~~g~~~~~p~~~ 342 (702)
T 4fnv_A 266 ANALATAGTLMPEFKNA--EKWMNTGYQILSEEVQNQIMSDGWHKEM-SLHYHIGIVADFYEAMKLAEANQLSSKLPSDF 342 (702)
T ss_dssp HHHHHHHHHHCTTBTTH--HHHHHHHHHHHHHHHHHSBCTTSCBTTC-CHHHHHHHHHHHHHHHHHHHHTTCGGGSCTTT
T ss_pred HHHHHHHHHHCCCCccH--HHHHHHHHHHHHHHHHhhcCCCCccccC-CHHHHHHHHHHHHHHHHHHHHcCCCcCCCHHH
Confidence 33444444445542211 2334444444 44444689987432 33332222211 122233343 1112
Q ss_pred HHHHHHHHHHHHhccCCCC
Q 026400 202 CLAIRKATDFLLNIQCDDG 220 (239)
Q Consensus 202 ~~~i~~a~~~L~~~Q~~dG 220 (239)
.+.++|++.||+....+||
T Consensus 343 ~~~L~km~~~l~~l~~PDG 361 (702)
T 4fnv_A 343 TEPLRKAAEVVMYFTYPNY 361 (702)
T ss_dssp THHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 5789999999999999999
No 105
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.70 E-value=42 Score=19.72 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCccCCCHHHHHHHHHHHHhc
Q 026400 185 TWWAISGLVAAEKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 185 T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 215 (239)
...+..||...+.. +++|++||++.
T Consensus 22 ~~~a~~AL~~~~~n------~e~A~e~L~~g 46 (49)
T 1ify_A 22 RERVVAALRASYNN------PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHTTTSC------SHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 34577788877654 47899999873
No 106
>1cb8_A Protein (chondroitinase AC); lyase, chondroitin degradation; HET: MAN RAM GCU MFU; 1.90A {Pedobacter heparinus} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1hm2_A* 1hm3_A* 1hmu_A* 1hmw_A*
Probab=31.14 E-value=71 Score=29.84 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.8
Q ss_pred CchhhhHHHHHHHHHHHHhcccCCCCcc
Q 026400 147 HKKNEVNNFITNGVKFTEDSQKLDGSWY 174 (239)
Q Consensus 147 ~~~~~~~~~i~ra~~~L~~~Q~~dG~w~ 174 (239)
++.+++...|.+|++|........|-|.
T Consensus 78 y~~~~l~~~I~~al~~~~~~~~~~~NWW 105 (678)
T 1cb8_A 78 YGDDKVFDQISKAFKYWYDSDPKSRNWW 105 (678)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCCSSHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 4567788899999999888877788874
No 107
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=29.58 E-value=1.9e+02 Score=24.86 Aligned_cols=24 Identities=8% Similarity=0.347 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhccCCCCccCCC
Q 026400 202 CLAIRKATDFLLNIQCDDGGWGES 225 (239)
Q Consensus 202 ~~~i~~a~~~L~~~Q~~dGgWg~~ 225 (239)
.+.++++++|+++.+.++|.|...
T Consensus 253 ~~~i~~~l~~l~~~~~~~g~wp~~ 276 (411)
T 3e6u_A 253 HSLVKPSVDYVCQLKFPSGNYPPC 276 (411)
T ss_dssp HHTHHHHHHHHHHTCCTTSCCCSB
T ss_pred HHHHHHHHHHHHHhhccCCCCCCC
Confidence 357899999999999999988653
No 108
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=29.48 E-value=1.8e+02 Score=27.79 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=55.6
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeec-cCCCChhhhhhhchhhhhhhhhccCCCccc
Q 026400 51 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGW-EPAGAPSWIELLNPIEFLDEVIIEHDYVEC 129 (239)
Q Consensus 51 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 129 (239)
|+....++|+.. ..+.+++.+..+.+.|.+||.+..+ .+.... +..-+.....+.
T Consensus 368 D~~qd~~~~~~~------------~pe~ar~~il~~~~~Q~~dG~v~h~~~p~~~~------------g~~~~~~~~~D~ 423 (822)
T 3rrs_A 368 DSNQDLLGFVHL------------IPERARERIIDIASTQFADGSAYHQYQPLTKR------------GNNDIGSGFNDD 423 (822)
T ss_dssp HHHHHHHHHTTT------------CHHHHHHHHHHHHTTCCTTSCCCSEEETTTTE------------ECTTTCSCBTTH
T ss_pred HHHHHHHHHHhc------------CHHHHHHHHHHHHHhhcccCcccceecCcCCC------------CccCCCCcccch
Confidence 455566666532 3577888899999999999998642 211000 000001124455
Q ss_pred hHHHHHHHHHhhhhCCCC----------c----hhhhHHHHHHHHHHHHhcccCCC
Q 026400 130 TASALKAMTLFQKLYPKH----------K----KNEVNNFITNGVKFTEDSQKLDG 171 (239)
Q Consensus 130 Ta~~l~aL~~~~~~~~~~----------~----~~~~~~~i~ra~~~L~~~Q~~dG 171 (239)
+.-.+.++..+-+...+. + ...+-+.++|+++|+++...++|
T Consensus 424 ~lWl~~av~~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 424 PLWLIAGTAAYIKETGDFSILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred HhHHHHHHHHHHHHHCCHHHHHhhhhhhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 666667766542221111 0 02345689999999997666655
No 109
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.49 E-value=65 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCccCCCHHHHHHHHHHHHhccCC
Q 026400 186 WWAISGLVAAEKTYSNCLAIRKATDFLLNIQCD 218 (239)
Q Consensus 186 ~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~ 218 (239)
..|..||...+. .+++|++||+++..+
T Consensus 36 ~~a~~AL~~~n~------n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 36 EPAEEALKSNNM------NLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHTTS------CHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHHCcCC
Confidence 446677754432 278999999998765
No 110
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.16 E-value=85 Score=19.07 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=17.5
Q ss_pred HHHHHHHHcCccCCCHHHHHHHHHHHHhccCCC
Q 026400 187 WAISGLVAAEKTYSNCLAIRKATDFLLNIQCDD 219 (239)
Q Consensus 187 ~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~d 219 (239)
.|..||...|..- ++.|++||.+.--++
T Consensus 25 rae~Alk~Tg~~G-----le~AmewL~k~~~~~ 52 (54)
T 2cos_A 25 MAGRALKQTGSRS-----IEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHTSCC-----HHHHHHHHHHHSCSC
T ss_pred HHHHHHHHhCccc-----HHHHHHHHHHhcCCC
Confidence 4555666655432 778888998764443
No 111
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=27.63 E-value=75 Score=28.00 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=53.9
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccch
Q 026400 51 CSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECT 130 (239)
Q Consensus 51 ~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~T 130 (239)
-++..|+|++..... ..++...-.+++.+.+++|.++..-.|-|..|-...+. ..+| |+..- +.-+.-.|
T Consensus 66 niGfgL~A~~vA~e~--G~I~r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg---~~lp----f~~~d-~~~StVDT 135 (430)
T 3eu8_A 66 GSGFGIMAILAGIDR--GYVSREEGLRRMEKIVGFLEKADRFKGAYPHWWNGETG---HVQP----FGQKD-NGGDLVET 135 (430)
T ss_dssp HHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTC---CBCC----BTTTB-CSEEHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhchhcCCcCccccCCCCC---CcCC----CCccc-CcccHHHH
Confidence 346667777665431 11111123467888899999998888998765422221 1111 11000 00012248
Q ss_pred HHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcc
Q 026400 131 ASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQ 167 (239)
Q Consensus 131 a~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q 167 (239)
+..+.+|-.+++.+.+... .++.|+.-++-|-+..
T Consensus 136 a~L~~GlL~ar~YF~~~~~--~E~~i~~~~~~L~~~v 170 (430)
T 3eu8_A 136 AFLMQGLLAVHQYYAEGSA--EEKKLAGRIDKLWREV 170 (430)
T ss_dssp HHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHhC
Confidence 8888888777665433221 1334444444444443
No 112
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=27.16 E-value=3.1e+02 Score=23.83 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=45.5
Q ss_pred hHHHHhhhhHHhhcccCCcceeeccCCC-Chhhhhhhchhhh--hhhh-hc--cCCCccchHHHHHHHHHhhhhCCCC--
Q 026400 76 PERFYDAANFMLYIQSKTGGITGWEPAG-APSWIELLNPIEF--LDEV-II--EHDYVECTASALKAMTLFQKLYPKH-- 147 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~dGgw~~~~~~~-~~~~~~~~~~~e~--~~~~-~~--~~~~~~~Ta~~l~aL~~~~~~~~~~-- 147 (239)
.+.|+=+++||++||.++|.+-.--.+. ..+..-..| -++ -|-. .+ .++..+.++.+..+|+.....+...
T Consensus 93 ldeikwg~D~llk~~~~~g~~y~qVgd~~~Dh~~w~~P-e~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D~ 171 (433)
T 1ks8_A 93 RKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAFWGRP-EDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDG 171 (433)
T ss_dssp HHHHHHHHHHHHHHCCBTTBEEEEESCHHHHHTCCSCG-GGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeCCCCcCCcccCCH-hhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccCH
Confidence 3445556889999999988763211110 000000011 010 0100 01 1233445666666666644333221
Q ss_pred -chhhhHHHHHHHHHHHHhcc
Q 026400 148 -KKNEVNNFITNGVKFTEDSQ 167 (239)
Q Consensus 148 -~~~~~~~~i~ra~~~L~~~Q 167 (239)
-..+..++.+++.+|..+.+
T Consensus 172 ~yA~~~L~~A~~~~~fa~~~~ 192 (433)
T 1ks8_A 172 TYSNNLLTHARQLFDFANNYR 192 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHCC
Confidence 13556678889999998875
No 113
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=26.39 E-value=3.8e+02 Score=24.64 Aligned_cols=87 Identities=9% Similarity=0.144 Sum_probs=43.9
Q ss_pred hHHHHhhhhHHhhcccCC--ccee-ec-cCCCChhhhhhhchhhhh-hhhhccCCCccchHHHHHHHHHhhhhC----CC
Q 026400 76 PERFYDAANFMLYIQSKT--GGIT-GW-EPAGAPSWIELLNPIEFL-DEVIIEHDYVECTASALKAMTLFQKLY----PK 146 (239)
Q Consensus 76 ~~~i~~av~~Ll~~Q~~d--Ggw~-~~-~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~Ta~~l~aL~~~~~~~----~~ 146 (239)
.+.|+=+++||++||.++ |++- .. +....+ + .+| .+.- ....+. +..+.++.+..+|+.....+ |.
T Consensus 235 ldeikwg~Dyllk~q~~~~~g~~y~~vgd~~~~~-~--~~P-e~~~~~R~~~~-~~s~~a~e~AAAlAaAS~vfk~~D~~ 309 (639)
T 1clc_A 235 LDELKYEIDWILTMQYPDGSGRVAHKVSTRNFGG-F--IMP-ENEHDERFFVP-WSSAATADFVAMTAMAARIFRPYDPQ 309 (639)
T ss_dssp HHHHHHHHHHHHTTBCTTSSCCBEEEEECSSCCC-S--CCG-GGCCSCCEEEE-ECHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-C--CCc-hhcCCCceEec-CCcHHHHHHHHHHHHHHHhccccCHH
Confidence 455666789999999965 5552 11 111111 0 111 1100 001111 12344555555565543322 22
Q ss_pred CchhhhHHHHHHHHHHHHhccc
Q 026400 147 HKKNEVNNFITNGVKFTEDSQK 168 (239)
Q Consensus 147 ~~~~~~~~~i~ra~~~L~~~Q~ 168 (239)
+ ..++..+.+++.+|..+.+.
T Consensus 310 y-A~~~L~~Ak~l~~fA~~~~~ 330 (639)
T 1clc_A 310 Y-AEKCINAAKVSYEFLKNNPA 330 (639)
T ss_dssp H-HHHHHHHHHHHHHHHHHCCS
T ss_pred H-HHHHHHHHHHHHHHHHHcCC
Confidence 2 35667788999999998764
No 114
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=25.17 E-value=1.5e+02 Score=25.99 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHHHHHhcccCCCCccCCC----Cc----------chhhHHHHHHHHHH
Q 026400 128 ECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTW----GV----------CFIYSTWWAISGLV 193 (239)
Q Consensus 128 ~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~~L~~~Q~~dG~w~g~~----g~----------~~~~~T~~al~aL~ 193 (239)
..++..|+++....+. .=....+..+.+.+.+++|.+..+-.|.|+.-+ |. -.+..|++.+++|.
T Consensus 65 tniGfgL~A~~vA~e~-G~I~r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg~~lpf~~~d~~~StVDTa~L~~GlL 143 (430)
T 3eu8_A 65 GGSGFGIMAILAGIDR-GYVSREEGLRRMEKIVGFLEKADRFKGAYPHWWNGETGHVQPFGQKDNGGDLVETAFLMQGLL 143 (430)
T ss_dssp HHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTCCBCCBTTTBCSEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhchhcCCcCccccCCCCCCcCCCCcccCcccHHHHHHHHHHHH
Confidence 3466667776654332 112345556789999999999999899886321 21 23567888888776
Q ss_pred HcCc----cCCCHHHHHHHHHHHHhc
Q 026400 194 AAEK----TYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 194 ~~g~----~~~~~~~i~~a~~~L~~~ 215 (239)
.+.. ....++.|++-++-|.+.
T Consensus 144 ~ar~YF~~~~~~E~~i~~~~~~L~~~ 169 (430)
T 3eu8_A 144 AVHQYYAEGSAEEKKLAGRIDKLWRE 169 (430)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 6532 100245566666666654
No 115
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=23.75 E-value=80 Score=29.70 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhc---c-cCCCCccCCCCcch-hhHHHHH---HHHHHH-cCccCCCHHHHHHHHHHHHhccCCCCc
Q 026400 153 NNFITNGVKFTEDS---Q-KLDGSWYGTWGVCF-IYSTWWA---ISGLVA-AEKTYSNCLAIRKATDFLLNIQCDDGG 221 (239)
Q Consensus 153 ~~~i~ra~~~L~~~---Q-~~dG~w~g~~g~~~-~~~T~~a---l~aL~~-~g~~~~~~~~i~~a~~~L~~~Q~~dGg 221 (239)
...++++++.|... . .+||+|.. |..| .|.+... +.+|.. .|.+....+.+++...|++....+||-
T Consensus 335 ~~wl~~a~~~l~~~l~~~~~~DG~~~E--G~~Y~~~~~~~~~~~~~~l~~~~g~d~~~~p~l~~~~~~~~~~~~p~g~ 410 (776)
T 3a0o_A 335 GEWLDYTVEFLATLYSPWAGTDGGWAE--GPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKAPGTR 410 (776)
T ss_dssp HHHHHHHHHHHHHTCCTTBCTTSCBTT--CHHHHHHHHHHHHHHHHHHHHHHCCCGGGSHHHHHTTHHHHHHSCTTCS
T ss_pred HHHHHHHHHHHHHhcccccCCCCCCcc--chhHHHHHHHHHHHHHHHHHHhhCcchhhCHhHHHHHHHHHHeeCCCCc
Confidence 45677777764432 2 58888854 3332 2333222 233322 344332468999999999999999875
No 116
>3s88_J GP2, GP2, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_J* 3csy_J* 2lcy_A 2lcz_A
Probab=22.74 E-value=73 Score=23.57 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=27.2
Q ss_pred CcchHHHHHHHHHhcCCCCcccCCCCChHHHHhhhhHHhhccc
Q 026400 49 SDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQS 91 (239)
Q Consensus 49 ~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~av~~Ll~~Q~ 91 (239)
+..|+.+|..|++.-..-+ -..-.-++|++|||..|.
T Consensus 90 AN~Tt~~L~l~Lr~ttelR------t~sl~NR~AIDFLL~rwG 126 (167)
T 3s88_J 90 ANETTQALQLFLRATTELR------TYTILNRKAIDFLLRRWG 126 (167)
T ss_dssp HHHHHHHHHHHHHHCCCSE------ECTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHhC
Confidence 4678999999998654211 245667889999999884
No 117
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=21.56 E-value=66 Score=19.38 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.0
Q ss_pred ChHHHHhhhhHHhhccc-CCccee
Q 026400 75 EPERFYDAANFMLYIQS-KTGGIT 97 (239)
Q Consensus 75 ~~~~i~~av~~Ll~~Q~-~dGgw~ 97 (239)
.+++|..++.-+++|-- .+|||-
T Consensus 6 ~D~rl~~al~qMl~MGF~negGWL 29 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFSDEGGWL 29 (52)
T ss_dssp SCHHHHHHHHHHHTTTCCCTTSHH
T ss_pred cChHHHHHHHHHHHcCCCccccHH
Confidence 46889999999998864 458883
No 118
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=20.29 E-value=1e+02 Score=21.60 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCccCCCHHHHHHHHHHHHhc
Q 026400 186 WWAISGLVAAEKTYSNCLAIRKATDFLLNI 215 (239)
Q Consensus 186 ~~al~aL~~~g~~~~~~~~i~~a~~~L~~~ 215 (239)
..++.||...+.. +++|++||++.
T Consensus 82 ~~ni~AL~~t~Gd------ve~AVe~L~~~ 105 (108)
T 2cwb_A 82 ELSLRALQATGGD------IQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhc
Confidence 3567788877654 57999999975
Done!