Query 026401
Match_columns 239
No_of_seqs 138 out of 1470
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1.8E-29 4E-34 221.5 18.3 219 2-227 110-338 (358)
2 PRK11453 O-acetylserine/cystei 99.9 8.8E-26 1.9E-30 194.5 16.0 194 2-220 92-290 (299)
3 PRK11689 aromatic amino acid e 99.9 6.4E-25 1.4E-29 188.8 13.1 193 3-220 98-290 (295)
4 PRK11272 putative DMT superfam 99.9 3E-24 6.6E-29 184.4 15.1 188 2-221 102-289 (292)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 3E-23 6.4E-28 174.8 16.0 180 2-212 79-259 (260)
6 TIGR00817 tpt Tpt phosphate/ph 99.9 1.3E-23 2.7E-28 181.2 12.2 193 2-223 97-299 (302)
7 PRK10532 threonine and homoser 99.9 7.7E-22 1.7E-26 169.5 16.1 184 3-223 104-287 (293)
8 TIGR03340 phn_DUF6 phosphonate 99.9 1E-21 2.2E-26 167.8 14.8 182 2-214 95-280 (281)
9 PRK15430 putative chlorampheni 99.9 6.2E-22 1.3E-26 170.4 12.5 181 2-218 105-286 (296)
10 PF06027 DUF914: Eukaryotic pr 99.9 2.2E-20 4.8E-25 161.6 18.6 201 2-224 111-312 (334)
11 PTZ00343 triose or hexose phos 99.8 3.4E-20 7.3E-25 163.0 13.2 188 2-218 146-349 (350)
12 COG0697 RhaT Permeases of the 99.8 1.9E-18 4.2E-23 146.7 15.7 185 2-218 102-288 (292)
13 KOG4510 Permease of the drug/m 99.7 8.3E-19 1.8E-23 143.7 4.2 198 2-219 129-327 (346)
14 KOG2765 Predicted membrane pro 99.7 8.2E-17 1.8E-21 137.6 12.9 203 2-224 191-397 (416)
15 COG2510 Predicted membrane pro 99.7 1.5E-15 3.3E-20 111.5 13.9 135 80-217 5-139 (140)
16 TIGR00688 rarD rarD protein. T 99.7 3.4E-16 7.3E-21 131.9 11.8 154 2-192 102-255 (256)
17 PF08449 UAA: UAA transporter 99.6 1.7E-14 3.6E-19 124.6 15.5 200 4-222 98-302 (303)
18 TIGR00776 RhaT RhaT L-rhamnose 99.6 1.1E-14 2.4E-19 124.9 13.3 182 5-217 95-288 (290)
19 PF00892 EamA: EamA-like trans 99.6 4.1E-15 9E-20 110.8 8.2 125 88-216 1-125 (126)
20 COG5006 rhtA Threonine/homoser 99.6 3.9E-14 8.5E-19 115.6 13.9 166 32-221 121-286 (292)
21 COG2962 RarD Predicted permeas 99.6 7.8E-14 1.7E-18 116.3 14.0 180 4-219 106-285 (293)
22 KOG2766 Predicted membrane pro 99.5 3.2E-14 6.9E-19 116.2 5.6 184 9-218 117-300 (336)
23 KOG1580 UDP-galactose transpor 99.5 1.4E-12 3E-17 105.6 13.3 189 5-215 120-311 (337)
24 KOG1441 Glucose-6-phosphate/ph 99.3 5.6E-12 1.2E-16 108.3 5.9 188 4-225 117-315 (316)
25 PRK15430 putative chlorampheni 99.2 9.3E-11 2E-15 100.9 12.3 140 75-217 5-145 (296)
26 TIGR03340 phn_DUF6 phosphonate 99.2 2.1E-10 4.5E-15 98.0 14.2 132 81-217 4-135 (281)
27 TIGR00688 rarD rarD protein. T 99.2 3.4E-10 7.4E-15 95.3 11.6 137 78-217 2-142 (256)
28 PRK02971 4-amino-4-deoxy-L-ara 99.1 1.2E-09 2.6E-14 82.4 10.7 123 78-221 2-126 (129)
29 PF03151 TPT: Triose-phosphate 99.1 1.3E-09 2.8E-14 84.4 11.3 138 79-217 1-153 (153)
30 PF04142 Nuc_sug_transp: Nucle 98.9 1.6E-08 3.4E-13 84.7 12.6 193 3-207 50-243 (244)
31 TIGR00950 2A78 Carboxylate/Ami 98.9 1E-08 2.2E-13 86.2 11.3 119 90-217 1-119 (260)
32 PRK11272 putative DMT superfam 98.9 1.7E-08 3.8E-13 86.7 12.9 131 81-218 11-142 (292)
33 KOG1581 UDP-galactose transpor 98.9 9.2E-09 2E-13 86.5 10.6 191 10-221 123-317 (327)
34 KOG1583 UDP-N-acetylglucosamin 98.9 1.3E-07 2.8E-12 78.6 15.8 198 5-217 100-314 (330)
35 PLN00411 nodulin MtN21 family 98.9 2.3E-08 5E-13 88.3 12.2 139 78-218 13-157 (358)
36 PF13536 EmrE: Multidrug resis 98.9 5.3E-09 1.1E-13 77.2 6.6 108 113-221 3-110 (113)
37 PRK11453 O-acetylserine/cystei 98.9 3.7E-08 8E-13 84.9 12.7 126 81-218 7-133 (299)
38 KOG2234 Predicted UDP-galactos 98.8 3.9E-07 8.4E-12 78.5 16.8 201 4-222 126-327 (345)
39 PRK11689 aromatic amino acid e 98.8 1.2E-07 2.6E-12 81.6 12.4 131 78-218 4-138 (295)
40 TIGR00803 nst UDP-galactose tr 98.7 8.4E-08 1.8E-12 79.1 9.1 202 4-214 12-221 (222)
41 KOG1443 Predicted integral mem 98.7 7.1E-07 1.5E-11 75.3 14.4 185 4-217 118-315 (349)
42 TIGR00817 tpt Tpt phosphate/ph 98.6 3.8E-07 8.2E-12 78.6 11.6 120 93-216 17-136 (302)
43 KOG1442 GDP-fucose transporter 98.6 1.4E-07 3.1E-12 78.4 8.3 196 4-225 136-335 (347)
44 PTZ00343 triose or hexose phos 98.6 9.8E-07 2.1E-11 77.8 14.3 125 91-217 62-186 (350)
45 KOG1444 Nucleotide-sugar trans 98.6 1.3E-06 2.8E-11 74.3 13.8 192 4-226 111-309 (314)
46 PRK15051 4-amino-4-deoxy-L-ara 98.6 2E-07 4.3E-12 68.6 7.5 66 151-216 43-108 (111)
47 PF06800 Sugar_transport: Suga 98.5 4.6E-06 9.9E-11 70.3 14.7 184 5-214 81-268 (269)
48 KOG4314 Predicted carbohydrate 98.5 7.4E-07 1.6E-11 70.9 8.5 190 4-221 87-280 (290)
49 COG0697 RhaT Permeases of the 98.5 4E-06 8.6E-11 70.9 13.6 141 77-221 6-147 (292)
50 TIGR00776 RhaT RhaT L-rhamnose 98.4 2.4E-06 5.3E-11 73.4 11.1 132 79-219 2-138 (290)
51 COG2962 RarD Predicted permeas 98.3 5.7E-06 1.2E-10 69.6 10.6 140 78-220 7-147 (293)
52 KOG1582 UDP-galactose transpor 98.3 3.1E-06 6.8E-11 70.4 7.7 185 11-220 147-335 (367)
53 PF05653 Mg_trans_NIPA: Magnes 98.3 4.5E-06 9.7E-11 72.0 8.4 201 5-221 85-296 (300)
54 KOG4510 Permease of the drug/m 98.2 5.6E-07 1.2E-11 74.7 2.2 135 77-219 37-171 (346)
55 PRK10532 threonine and homoser 98.2 2.6E-05 5.7E-10 67.0 12.6 127 76-216 10-136 (293)
56 PF06027 DUF914: Eukaryotic pr 98.1 5.2E-05 1.1E-09 66.2 12.8 142 78-221 13-155 (334)
57 KOG3912 Predicted integral mem 98.1 1.7E-05 3.7E-10 66.4 9.1 192 5-216 121-333 (372)
58 PF08449 UAA: UAA transporter 98.0 0.00011 2.4E-09 63.4 12.3 129 91-225 13-144 (303)
59 PF05653 Mg_trans_NIPA: Magnes 98.0 2.6E-05 5.7E-10 67.3 7.9 120 74-217 3-122 (300)
60 PRK10452 multidrug efflux syst 98.0 2.5E-05 5.3E-10 58.1 6.2 69 151-219 36-105 (120)
61 PRK09541 emrE multidrug efflux 97.8 6.9E-05 1.5E-09 54.9 6.1 68 152-219 37-105 (110)
62 PF04657 DUF606: Protein of un 97.8 0.00049 1.1E-08 52.6 10.6 131 80-214 3-138 (138)
63 COG5070 VRG4 Nucleotide-sugar 97.6 0.00027 5.8E-09 57.6 7.2 197 4-223 102-302 (309)
64 PF13536 EmrE: Multidrug resis 97.6 3.7E-05 8E-10 56.6 1.9 41 2-48 66-106 (113)
65 PRK10650 multidrug efflux syst 97.5 0.0011 2.4E-08 48.4 8.4 62 154-215 44-106 (109)
66 PRK13499 rhamnose-proton sympo 97.4 0.025 5.4E-07 49.7 17.7 197 6-218 110-342 (345)
67 COG3238 Uncharacterized protei 97.4 0.0027 6E-08 48.8 10.0 137 78-217 5-146 (150)
68 PF06800 Sugar_transport: Suga 97.3 0.0036 7.9E-08 52.9 11.3 81 143-224 44-129 (269)
69 PRK13499 rhamnose-proton sympo 97.3 0.0016 3.4E-08 57.1 9.5 136 75-217 4-153 (345)
70 PRK11431 multidrug efflux syst 97.3 0.00059 1.3E-08 49.5 5.7 65 152-216 36-101 (105)
71 PF00893 Multi_Drug_Res: Small 97.3 0.00082 1.8E-08 47.7 6.4 55 154-208 38-93 (93)
72 KOG2922 Uncharacterized conser 97.3 0.00067 1.4E-08 58.1 6.4 198 3-220 97-309 (335)
73 COG2076 EmrE Membrane transpor 97.2 0.00078 1.7E-08 48.7 5.3 64 154-217 39-103 (106)
74 PF00892 EamA: EamA-like trans 96.9 0.00058 1.3E-08 50.1 2.1 40 2-47 86-125 (126)
75 PRK15051 4-amino-4-deoxy-L-ara 96.9 0.0009 1.9E-08 49.2 2.9 38 4-47 71-108 (111)
76 PF04142 Nuc_sug_transp: Nucle 96.8 0.003 6.6E-08 52.9 6.2 68 155-222 27-94 (244)
77 PF10639 UPF0546: Uncharacteri 96.6 0.008 1.7E-07 44.1 6.3 108 86-215 4-112 (113)
78 COG4975 GlcU Putative glucose 96.5 0.0017 3.6E-08 53.8 2.1 136 79-224 3-143 (288)
79 KOG1441 Glucose-6-phosphate/ph 95.8 0.0062 1.3E-07 52.8 2.5 122 93-217 32-155 (316)
80 KOG2234 Predicted UDP-galactos 95.6 0.45 9.8E-06 41.6 13.2 145 78-223 15-170 (345)
81 PF07857 DUF1632: CEO family ( 95.6 0.068 1.5E-06 45.0 7.8 126 79-221 1-138 (254)
82 KOG2922 Uncharacterized conser 95.4 0.0071 1.5E-07 51.9 1.3 125 73-221 16-140 (335)
83 KOG4314 Predicted carbohydrate 94.7 0.016 3.5E-07 46.5 1.5 64 157-220 65-128 (290)
84 KOG2765 Predicted membrane pro 94.2 0.044 9.6E-07 48.1 3.2 66 156-221 170-235 (416)
85 COG4975 GlcU Putative glucose 93.6 0.0067 1.4E-07 50.3 -2.7 184 7-216 97-284 (288)
86 PRK10452 multidrug efflux syst 92.9 0.089 1.9E-06 39.1 2.6 36 6-47 67-102 (120)
87 COG2076 EmrE Membrane transpor 92.8 0.096 2.1E-06 37.9 2.5 35 7-47 68-102 (106)
88 PRK02971 4-amino-4-deoxy-L-ara 92.7 0.092 2E-06 39.6 2.5 37 5-47 83-121 (129)
89 PRK09541 emrE multidrug efflux 92.6 0.11 2.3E-06 38.1 2.6 35 7-47 68-102 (110)
90 PRK10650 multidrug efflux syst 92.3 0.12 2.5E-06 37.8 2.5 34 7-46 73-106 (109)
91 PRK11431 multidrug efflux syst 92.1 0.13 2.9E-06 37.2 2.5 35 7-47 67-101 (105)
92 KOG1580 UDP-galactose transpor 91.3 0.73 1.6E-05 38.3 6.3 134 82-221 17-161 (337)
93 KOG1443 Predicted integral mem 90.2 4 8.8E-05 35.3 10.0 126 94-220 32-159 (349)
94 PRK02237 hypothetical protein; 90.1 0.48 1E-05 34.2 3.7 43 178-220 66-108 (109)
95 PF02694 UPF0060: Uncharacteri 89.6 0.43 9.3E-06 34.4 3.1 41 180-220 66-106 (107)
96 PF06379 RhaT: L-rhamnose-prot 87.8 3 6.5E-05 36.6 7.8 140 75-218 4-154 (344)
97 PF04342 DUF486: Protein of un 87.1 0.8 1.7E-05 33.0 3.2 31 186-216 77-107 (108)
98 COG3169 Uncharacterized protei 86.9 1.6 3.5E-05 31.0 4.6 34 184-217 82-115 (116)
99 KOG1444 Nucleotide-sugar trans 86.6 14 0.00031 32.0 11.1 117 93-217 27-149 (314)
100 KOG4831 Unnamed protein [Funct 84.6 2.4 5.1E-05 30.6 4.6 57 159-216 66-124 (125)
101 PF10639 UPF0546: Uncharacteri 83.3 0.71 1.5E-05 33.9 1.5 38 3-46 75-112 (113)
102 KOG1581 UDP-galactose transpor 83.0 25 0.00054 30.5 10.8 128 89-222 25-160 (327)
103 KOG3912 Predicted integral mem 81.7 1.2 2.7E-05 37.9 2.6 65 154-218 95-159 (372)
104 PF00893 Multi_Drug_Res: Small 81.2 1.3 2.8E-05 31.2 2.2 28 5-38 65-92 (93)
105 PF06379 RhaT: L-rhamnose-prot 77.9 26 0.00056 30.8 9.5 177 30-218 135-341 (344)
106 KOG1442 GDP-fucose transporter 77.3 6.6 0.00014 33.5 5.5 111 105-216 59-173 (347)
107 PF05977 MFS_3: Transmembrane 75.6 67 0.0015 30.1 12.4 39 176-214 351-389 (524)
108 COG1742 Uncharacterized conser 75.3 6.3 0.00014 28.3 4.2 45 176-220 63-107 (109)
109 COG5006 rhtA Threonine/homoser 74.5 53 0.0011 27.9 11.9 103 79-189 13-115 (292)
110 KOG2766 Predicted membrane pro 74.3 0.31 6.8E-06 40.9 -2.9 121 91-219 31-152 (336)
111 PF06123 CreD: Inner membrane 65.0 89 0.0019 28.6 10.3 121 78-216 300-422 (430)
112 PRK02237 hypothetical protein; 62.1 7.8 0.00017 28.1 2.5 32 11-48 74-105 (109)
113 PF02694 UPF0060: Uncharacteri 60.2 7.2 0.00016 28.2 2.0 34 9-48 70-103 (107)
114 PRK11715 inner membrane protei 54.8 1.5E+02 0.0032 27.2 10.0 124 78-217 306-429 (436)
115 TIGR00905 2A0302 transporter, 54.5 54 0.0012 30.0 7.3 44 177-221 394-438 (473)
116 COG4858 Uncharacterized membra 51.8 96 0.0021 25.0 7.2 42 143-184 126-169 (226)
117 PF03595 SLAC1: Voltage-depend 50.6 1.3E+02 0.0027 26.0 8.7 74 32-123 6-87 (330)
118 PF04342 DUF486: Protein of un 50.1 11 0.00024 27.2 1.6 29 11-45 77-105 (108)
119 TIGR01167 LPXTG_anchor LPXTG-m 47.2 26 0.00056 19.2 2.6 17 197-213 10-26 (34)
120 PF07857 DUF1632: CEO family ( 46.5 1.8E+02 0.0039 24.6 8.7 25 29-53 115-139 (254)
121 PRK13108 prolipoprotein diacyl 45.8 59 0.0013 30.0 6.0 22 197-218 254-275 (460)
122 PF03547 Mem_trans: Membrane t 45.3 2.1E+02 0.0046 25.1 12.3 11 154-164 72-82 (385)
123 PRK11469 hypothetical protein; 44.0 13 0.00028 29.8 1.4 40 177-216 46-86 (188)
124 PF07168 Ureide_permease: Urei 43.6 13 0.00028 32.2 1.3 62 154-216 81-145 (336)
125 PRK11902 ampG muropeptide tran 43.0 2.3E+02 0.005 24.8 12.2 21 195-215 364-386 (402)
126 PF04246 RseC_MucC: Positive r 42.5 6.9 0.00015 29.4 -0.4 25 172-197 68-92 (135)
127 COG4452 CreD Inner membrane pr 41.8 2.7E+02 0.0057 25.2 9.9 124 78-217 298-423 (443)
128 TIGR02840 spore_YtaF putative 41.6 16 0.00034 29.7 1.5 44 172-216 34-80 (206)
129 KOG1583 UDP-N-acetylglucosamin 41.4 38 0.00083 29.1 3.7 68 158-225 77-145 (330)
130 COG4657 RnfA Predicted NADH:ub 41.4 1.4E+02 0.003 23.5 6.5 51 75-125 129-184 (193)
131 PRK05122 major facilitator sup 41.1 2.4E+02 0.0052 24.5 12.2 34 184-217 354-387 (399)
132 PRK10435 cadB lysine/cadaverin 40.7 2.7E+02 0.0059 25.0 9.7 72 146-219 353-425 (435)
133 COG3169 Uncharacterized protei 40.3 26 0.00055 25.0 2.2 31 11-47 84-114 (116)
134 TIGR02865 spore_II_E stage II 40.0 3.8E+02 0.0083 26.5 13.6 40 2-47 16-55 (764)
135 COG3086 RseC Positive regulato 39.7 8.7 0.00019 29.4 -0.3 24 169-192 72-95 (150)
136 PF07444 Ycf66_N: Ycf66 protei 39.2 25 0.00054 24.3 2.0 30 196-225 4-33 (84)
137 PRK10862 SoxR reducing system 37.6 7.8 0.00017 30.0 -0.8 18 174-191 77-94 (154)
138 PF15102 TMEM154: TMEM154 prot 34.7 41 0.00088 25.8 2.7 20 204-223 68-87 (146)
139 PRK10644 arginine:agmatin anti 34.5 3.5E+02 0.0075 24.4 9.7 39 177-216 386-425 (445)
140 PF15345 TMEM51: Transmembrane 32.4 30 0.00066 28.6 1.8 21 203-223 67-87 (233)
141 COG1971 Predicted membrane pro 32.2 39 0.00084 27.2 2.3 40 177-216 46-86 (190)
142 COG1742 Uncharacterized conser 29.8 34 0.00073 24.7 1.4 27 16-48 78-104 (109)
143 PRK15049 L-asparagine permease 29.3 4.6E+02 0.01 24.2 10.7 11 178-188 422-432 (499)
144 PRK12437 prolipoprotein diacyl 28.7 1.5E+02 0.0032 25.2 5.4 47 173-219 206-257 (269)
145 PF11044 TMEMspv1-c74-12: Plec 28.1 35 0.00076 20.5 1.1 14 198-211 3-16 (49)
146 PRK10489 enterobactin exporter 27.9 4.2E+02 0.009 23.2 12.0 17 201-217 382-398 (417)
147 PRK11010 ampG muropeptide tran 27.4 4.8E+02 0.01 23.8 12.9 50 167-216 347-400 (491)
148 PF11755 DUF3311: Protein of u 26.8 1.9E+02 0.004 18.9 4.6 17 178-194 3-19 (66)
149 PF08693 SKG6: Transmembrane a 26.8 52 0.0011 19.4 1.6 17 204-220 22-38 (40)
150 PF05545 FixQ: Cbb3-type cytoc 26.8 56 0.0012 19.8 1.9 18 204-221 17-34 (49)
151 COG4147 DhlC Predicted symport 24.9 46 0.001 30.8 1.8 135 79-220 362-509 (529)
152 PF07214 DUF1418: Protein of u 24.9 1.9E+02 0.0041 20.5 4.4 18 201-218 49-66 (96)
153 PRK13727 conjugal transfer pil 24.3 87 0.0019 21.0 2.5 19 198-216 41-59 (80)
154 PF01102 Glycophorin_A: Glycop 24.3 57 0.0012 24.3 1.9 19 203-221 75-93 (122)
155 PF12292 DUF3624: Protein of u 24.0 2.2E+02 0.0047 19.3 4.4 18 82-99 25-42 (77)
156 PF15099 PIRT: Phosphoinositid 23.8 34 0.00074 25.5 0.6 16 146-161 58-73 (129)
157 PF13127 DUF3955: Protein of u 23.4 2.2E+02 0.0047 18.4 4.9 26 77-102 5-30 (63)
158 PRK00052 prolipoprotein diacyl 23.3 59 0.0013 27.5 2.1 48 174-221 209-261 (269)
159 TIGR03810 arg_ornith_anti argi 22.6 5.8E+02 0.013 23.1 10.2 41 180-221 392-433 (468)
160 PF11628 TCR_zetazeta: T-cell 22.6 65 0.0014 18.0 1.4 18 8-25 14-31 (33)
161 CHL00196 psbY photosystem II p 21.8 1.7E+02 0.0037 16.7 3.0 20 78-97 6-25 (36)
162 PF12606 RELT: Tumour necrosis 21.5 1.1E+02 0.0024 18.9 2.4 12 209-220 15-26 (50)
163 KOG4770 NADH dehydrogenase sub 21.0 2.3E+02 0.0051 24.1 5.0 34 164-199 33-66 (315)
164 TIGR00544 lgt prolipoprotein d 20.7 2.1E+02 0.0045 24.4 4.9 23 197-219 246-268 (278)
165 PRK10591 hypothetical protein; 20.7 2.9E+02 0.0062 19.5 4.6 18 201-218 49-66 (92)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=1.8e-29 Score=221.50 Aligned_cols=219 Identities=43% Similarity=0.762 Sum_probs=167.4
Q ss_pred CCcchHHHHHHHHHHh------hhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCC-CCCCc-cCCC-CCCCC
Q 026401 2 IGNLTPGFTFILAIIF------RMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTA-SIPAQ-SLHW-TPQST 72 (239)
Q Consensus 2 i~~~~P~~~~~la~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~-~~~~~-~~~~-~~~~~ 72 (239)
+.+++|++++++++++ +|||++++ +++|++++++|+.+++.++++.....+ +...+ ..+. .....
T Consensus 110 l~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 183 (358)
T PLN00411 110 ISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSS 183 (358)
T ss_pred HHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCC
Confidence 5689999999999999 58888888 999999999999998854443211000 00000 0000 01112
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCC-CcccccCCchhHHHHHHHH
Q 026401 73 RSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESN-LSAWRLKPDIELASIVYSA 151 (239)
Q Consensus 73 ~~~~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g 151 (239)
+.++..|+++++.++++|+.|++++|+..+++|+....+++++.++++...+.....++. ...|........+.++|.+
T Consensus 184 ~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~ 263 (358)
T PLN00411 184 NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMA 263 (358)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHH
Confidence 234567999999999999999999999999997566778888888888877776664432 2233222222345677888
Q ss_pred HHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccccccC
Q 026401 152 FFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEAGKN 227 (239)
Q Consensus 152 i~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~~~~~ 227 (239)
++ +.++|.+|++++++.||++++++.+++|++++++|++++||++++.+++|+++|+.|+++..++|+||.++++
T Consensus 264 i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~ 338 (358)
T PLN00411 264 II-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQL 338 (358)
T ss_pred HH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 75 5689999999999999999999999999999999999999999999999999999999999988777655443
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=8.8e-26 Score=194.49 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=154.5
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+.+++|+++.+++++++|||++++ +++|++++++|+.++.. ++. + .......|++
T Consensus 92 l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~--~~~-~----------------~~~~~~~G~~ 146 (299)
T PRK11453 92 VLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE--DSL-N----------------GQHVAMLGFM 146 (299)
T ss_pred HHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc--ccC-C----------------CcchhHHHHH
Confidence 457899999999999999999999 99999999999998872 110 0 1111236999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCc--hHHHHHHHHHHHHHHHHHHHHhccCCC---cccccCCchhHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYPA--EFVVTLLYCLFATIISAPICFVGESNL---SAWRLKPDIELASIVYSAFFGLS 156 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gi~~~~ 156 (239)
+++.++++|+.|.+++|+..++.++ ......+.+..+.+.........+.+. ..+...+...|..++|++++++.
T Consensus 147 l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~ 226 (299)
T PRK11453 147 LTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATI 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765532 234445555665555444444333221 11222234578899999999999
Q ss_pred HHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 157 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 157 ~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus 227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999999999999998877665
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=6.4e-25 Score=188.79 Aligned_cols=193 Identities=12% Similarity=0.131 Sum_probs=146.4
Q ss_pred CcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHH
Q 026401 3 GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLL 82 (239)
Q Consensus 3 ~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~ 82 (239)
.+++|+++.+++++++|||++++ +++|++++++|+.++.. .++..+.. +. ..+..+...|+++
T Consensus 98 ~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~~~------~~----~~~~~~~~~G~~~ 160 (295)
T PRK11689 98 NYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLSLA------EL----INNIASNPLSYGL 160 (295)
T ss_pred HHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccchhh------hh----hhccccChHHHHH
Confidence 46789999999999999999999 99999999999999882 11100000 00 0011122369999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHH
Q 026401 83 LLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVH 162 (239)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~ 162 (239)
++.++++||.|+++.||..+++ ++..... ..+++.+.+.....+..... .+...|..+++.++ ++.++|.+|
T Consensus 161 ~l~aa~~~A~~~v~~k~~~~~~-~~~~~~~---~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~~-~t~~~~~l~ 232 (295)
T PRK11689 161 AFIGAFIWAAYCNVTRKYARGK-NGITLFF---ILTALALWIKYFLSPQPAMV---FSLPAIIKLLLAAA-AMGFGYAAW 232 (295)
T ss_pred HHHHHHHHHHHHHHHhhccCCC-CchhHHH---HHHHHHHHHHHHHhcCcccc---CCHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999988777 4665422 23334444333332211111 12346777788885 789999999
Q ss_pred HHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 163 TFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 163 ~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++....+|
T Consensus 233 ~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 233 NVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 9999999999999999999999999999999999999999999999999988765443
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.92 E-value=3e-24 Score=184.35 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=155.6
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+.++.|+++.+++++ +|||++++ +++|++++++|+.++.. ++ . .+ ....|++
T Consensus 102 l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~-~~-~------------------~~-~~~~G~l 153 (292)
T PRK11272 102 VVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS-GG-N------------------LS-GNPWGAI 153 (292)
T ss_pred HHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc-Cc-c------------------cc-cchHHHH
Confidence 457899999999986 69999999 99999999999988762 11 0 01 1237999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVV 161 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l 161 (239)
+.+.++++||.|.+..||..++. +...+.+++..+++.+.+.....+.+... ..+...|..+++.+++++.++|.+
T Consensus 154 ~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 154 LILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976543 45667788888888887777653322111 123357889999999999999999
Q ss_pred HHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 162 HTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 162 ~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
|++++|+.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+++..+++++
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999988765443
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=3e-23 Score=174.79 Aligned_cols=180 Identities=18% Similarity=0.261 Sum_probs=152.0
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+.++.|+++++++++++|||++++ ++.|++++++|+.++.. ++ . ......|++
T Consensus 79 i~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~-~-------------------~~~~~~G~~ 131 (260)
T TIGR00950 79 LLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG-N-------------------LSINPAGLL 131 (260)
T ss_pred HHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC-c-------------------ccccHHHHH
Confidence 457899999999999999999999 99999999999999872 11 0 112347999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 160 (239)
+++.++++|+.+.+..|+..++.+ ++.....+++..+++.+.+..+..+... .+ +...|..+++.+++++.++|.
T Consensus 132 ~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 207 (260)
T TIGR00950 132 LGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYF 207 (260)
T ss_pred HHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887763 1345555778888888888876543221 11 234677899999999999999
Q ss_pred HHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhh
Q 026401 161 VHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGF 212 (239)
Q Consensus 161 l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi 212 (239)
+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++++.|+
T Consensus 208 ~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 208 LWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999886
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.90 E-value=1.3e-23 Score=181.24 Aligned_cols=193 Identities=17% Similarity=0.180 Sum_probs=149.2
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+.+++|+++++++++++|||++++ ++.|++++++|+.+.. .++ .+ ....|++
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~-------------------~~-~~~~G~~ 148 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTE-------------------LS-FNWAGFL 148 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCc-------------------cc-ccHHHHH
Confidence 346899999999999999999999 9999999999997654 110 11 1246999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--hcCchHHHHHHHHHHHHHHHHHHHHhccCCC---ccccc-----CCchhHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMK--LYPAEFVVTLLYCLFATIISAPICFVGESNL---SAWRL-----KPDIELASIVYSA 151 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~-----~~~~~~~~l~~~g 151 (239)
++++++++|++|++..||..+ ++ |+...+.+++..+++.++|.....+... .++.. .....+...++.+
T Consensus 149 ~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (302)
T TIGR00817 149 SAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAA 227 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHH
Confidence 999999999999999999887 77 6999999999999999999887654321 01100 0000111122333
Q ss_pred HHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccc
Q 026401 152 FFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDE 223 (239)
Q Consensus 152 i~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~ 223 (239)
..+....+.++++++++.+|++++++.+++|++++++|++++||++++.+++|+++++.|++++.+.|++++
T Consensus 228 ~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 228 MGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred HHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 222222334566899999999999999999999999999999999999999999999999999887655433
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.88 E-value=7.7e-22 Score=169.53 Aligned_cols=184 Identities=14% Similarity=0.091 Sum_probs=142.4
Q ss_pred CcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHH
Q 026401 3 GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLL 82 (239)
Q Consensus 3 ~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~ 82 (239)
..+.|+++.+++ +||++ +..++.++++|+.+++. .+++ .+.....|+++
T Consensus 104 ~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~------------------~~~~~~~G~ll 152 (293)
T PRK10532 104 EFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD------------------VSHVDLTGAAL 152 (293)
T ss_pred HHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC------------------cccCChHHHHH
Confidence 457899998876 35443 44567888999988771 1111 01112379999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHH
Q 026401 83 LLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVH 162 (239)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~ 162 (239)
.+.++++|+.|.+..|+..++++ +... .+..+++++.+.+.....+. ...+ +...|..++++|++++.++|.+|
T Consensus 153 ~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~---~~~~~~~~l~lgv~~t~~~~~l~ 226 (293)
T PRK10532 153 ALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG-EALW---HWSILPLGLAVAILSTALPYSLE 226 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC-cccC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887774 6665 45667777777776654322 1111 12345567899999999999999
Q ss_pred HHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccc
Q 026401 163 TFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDE 223 (239)
Q Consensus 163 ~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~ 223 (239)
++++++.++++++++.+++|+++.+++++++||++++.+++|+++|+.|+....+..+||.
T Consensus 227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999998876655533
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.88 E-value=1e-21 Score=167.85 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=137.0
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+.++.|+++.+++++++|||++++ +++|+++++.|+.++.. + +. .. ....|..
T Consensus 95 l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~-~~------------------~~-~~~~g~~ 147 (281)
T TIGR03340 95 LARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-S-RF------------------AQ-HRRKAYA 147 (281)
T ss_pred HHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-c-cc------------------cc-cchhHHH
Confidence 356889999999999999999999 99999999999998872 1 10 01 1125778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCchHH----HHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYPAEFV----VTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
+.+.++++|+.|.+..|+..++.+ +.. .+.+.+...++...+.....+.. .+. .+...++.+++.+.+++.+
T Consensus 148 ~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 148 WALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSATLGGLMIGG 223 (281)
T ss_pred HHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHH
Confidence 899999999999999988655442 221 22233222222222222111111 111 1123456778888889999
Q ss_pred HHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhh
Q 026401 158 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYT 214 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~ 214 (239)
+|.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+++
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999999999999875
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.87 E-value=6.2e-22 Score=170.37 Aligned_cols=181 Identities=10% Similarity=0.088 Sum_probs=133.5
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+.++.|+++.+++++++|||++++ ++.|+++++.|+.++.. +. ++ . ..
T Consensus 105 l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~---~~------------------~~-~----~~ 152 (296)
T PRK15430 105 GYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLW---TF------------------GS-L----PI 152 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHH---Hc------------------CC-c----cH
Confidence 457899999999999999999999 99999999999999872 10 00 0 14
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 160 (239)
+.++++++||.|.+..|+..++.. +....+.+.+.++.+...+.. ......+...+...+..+++.|+ ++.++|.
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~ 228 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLL 228 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHH
Confidence 678899999999999998754321 223344445444444332221 11111111111112333444555 6889999
Q ss_pred HHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 161 VHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 161 l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+.+....
T Consensus 229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887776543
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.86 E-value=2.2e-20 Score=161.58 Aligned_cols=201 Identities=19% Similarity=0.275 Sum_probs=159.6
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+..++-.++++++++++|||+++. +++|+++|++|+.+++. .|..+. +++....+..+|++
T Consensus 111 L~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~--sD~~~~-----------~~~~~~~~~i~GDl 171 (334)
T PF06027_consen 111 LDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVV--SDVLSG-----------SDSSSGSNPILGDL 171 (334)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheee--eccccc-----------ccCCCCCccchhHH
Confidence 345678899999999999999999 99999999999999884 222111 11123445679999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCC-CcccccCCchhHHHHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESN-LSAWRLKPDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 160 (239)
+++.|++.||.++++.++..++.+ ...+.++..+++.++..+.....|.. ....+.. ...+.+.....++...-|.
T Consensus 172 l~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--~~~~~~~v~~~~~lf~~y~ 248 (334)
T PF06027_consen 172 LALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT--SQVIGLLVGYALCLFLFYS 248 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--hhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 88999999999999998888776653 2222211 1222332222335567777
Q ss_pred HHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccccccc
Q 026401 161 VHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEA 224 (239)
Q Consensus 161 l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~~ 224 (239)
+....++..+|+...+-..+..+++++++++++|+++++..++|.++|++|.+++...++++++
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 8889999999999999999999999999999999999999999999999999998776554433
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.84 E-value=3.4e-20 Score=163.03 Aligned_cols=188 Identities=20% Similarity=0.220 Sum_probs=150.3
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+.+++|+++++++++++|||++++ ++.+++++++|+.+.+. ++ .+. ...|++
T Consensus 146 ika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~-------------------~~~-~~~G~~ 197 (350)
T PTZ00343 146 VKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE-------------------LHF-TWLAFW 197 (350)
T ss_pred HHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc-------------------chh-HHHHHH
Confidence 346899999999999999999999 99999999999999872 11 111 247999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC------chHHHHHHHHHHHHHHHHHHHHhccCCC--cccc----cCCchhHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYP------AEFVVTLLYCLFATIISAPICFVGESNL--SAWR----LKPDIELASIVY 149 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~ 149 (239)
++++|+++|++++++.|+..++.+ ++.....++...+++.++|+....|... ..+. ......+..+++
T Consensus 198 ~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (350)
T PTZ00343 198 CAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF 277 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH
Confidence 999999999999999999886531 3555666668899999999887554321 1110 000112233445
Q ss_pred HHHHHHHHHHHHHHH----hhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 150 SAFFGLSFITVVHTF----GLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 150 ~gi~~~~~~~~l~~~----a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
. ++.++++|++|+. ++++.+|.+.++..++.|++++++|++++||++++.+++|+++++.|++++.+-
T Consensus 278 ~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 278 K-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 4 5578999999995 999999999999999999999999999999999999999999999999988754
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=146.74 Aligned_cols=185 Identities=22% Similarity=0.317 Sum_probs=145.2
Q ss_pred CCcchHHHHHHHHH-HhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHH
Q 026401 2 IGNLTPGFTFILAI-IFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGG 80 (239)
Q Consensus 2 i~~~~P~~~~~la~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (239)
+.++.|+++.++++ +++|||++++ ++.++++++.|+.++.. .++. + ... ...|+
T Consensus 102 l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~-~~~~-~----------------~~~-~~~g~ 156 (292)
T COG0697 102 IIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILL-GGGG-G----------------GIL-SLLGL 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheec-CCCc-c----------------hhH-HHHHH
Confidence 45789999999997 7779999999 99999999999999882 1110 0 000 45899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCchHHHHH-HHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHH
Q 026401 81 LLLLISNLLISVWYIIQTQTMKLYPAEFVVTL-LYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFIT 159 (239)
Q Consensus 81 l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~ 159 (239)
++.+.++++|+.+.+..|+.. +. ++..... ++.. ............... .......+..+.+.|++++.++|
T Consensus 157 ~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 157 LLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLSGFG---APILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 55 3555555 4433 222222221111111 11123468889999999999999
Q ss_pred HHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 160 VVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 160 ~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+.+++.|+.+...+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988765
No 13
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.74 E-value=8.3e-19 Score=143.67 Aligned_cols=198 Identities=21% Similarity=0.200 Sum_probs=157.1
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
|..++|.+|++++|.++||+.++. ...+.++.+.|+++++ +.+...+.+... .+++.....+.|..
T Consensus 129 ItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpFlFG~~t~g------~~~s~~~~~~~gt~ 194 (346)
T KOG4510|consen 129 ITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPFLFGDTTEG------EDSSQVEYDIPGTV 194 (346)
T ss_pred EEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCcccCCCccc------cccccccccCCchH
Confidence 567899999999999999999999 9999999999999999 666555432211 11112233446788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccC-CchhHHHHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLK-PDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~~ 160 (239)
.++.++++.|...++.|+.-|+.+ .+....+..+++.+..++...... .++.+ ...+|+.++.+|++ +.+++.
T Consensus 195 aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGvf-gfigQI 268 (346)
T KOG4510|consen 195 AAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGVF-GFIGQI 268 (346)
T ss_pred HHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehhh-hhHHHH
Confidence 899999999999999999888884 566666666777776665554322 33333 24578888899995 579999
Q ss_pred HHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccc
Q 026401 161 VHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 161 l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
+.+.++|+-.+..+++..+.+.+++.+|..+++||.++++.|.|+++++.+.+.+..+|
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877665544
No 14
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=8.2e-17 Score=137.61 Aligned_cols=203 Identities=21% Similarity=0.332 Sum_probs=162.2
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+++++-+||..++.++..||+++. |.+++.+++.|++++.. ++.-. .++..+.+...|++
T Consensus 191 lSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~--~~s~~------------~~~~~a~~~llG~l 250 (416)
T KOG2765|consen 191 LSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTM--GDSKQ------------NSDLPASRPLLGNL 250 (416)
T ss_pred hhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEe--ccccc------------cccCCccchhHHHH
Confidence 467899999999999999999999 99999999999999984 22111 11223445579999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC---chHHHHHHHHHHHHHHHHHHHHhccC-CCcccccCCchhHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYP---AEFVVTLLYCLFATIISAPICFVGES-NLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
+++.+++.||.|.++.||...++. |-..+.++..++..+.++|..++... ..+.+..++......+++.+.+.+.+
T Consensus 251 laL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvv 330 (416)
T KOG2765|consen 251 LALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVV 330 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHH
Confidence 999999999999999999887663 34455555566666666665554322 22344454545566778888899999
Q ss_pred HHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccccccc
Q 026401 158 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEA 224 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~~ 224 (239)
+-++|.+|.-...|..+.+-+.++.+.+.+...++-|.++++.+++|...|++|.+++++..+...+
T Consensus 331 SDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~ 397 (416)
T KOG2765|consen 331 SDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKK 397 (416)
T ss_pred HHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccccc
Confidence 9999999999999999999999999999999999889999999999999999999998876554433
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.68 E-value=1.5e-15 Score=111.46 Aligned_cols=135 Identities=17% Similarity=0.118 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHH
Q 026401 80 GLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFIT 159 (239)
Q Consensus 80 ~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~ 159 (239)
.++++.+++++++..++.|...++. ||..-+....+...+.+....+.... .......+.+.|..++..|+ .++.++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~-~~~~~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGN-WQAGGEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCc-eecccccCcceehhhhHHHH-HHHHHH
Confidence 4789999999999999999999999 79999999999998888888776443 11111124567888899996 889999
Q ss_pred HHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 160 VVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 160 ~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
.+|++|+|..+++++.++..+.|++++++|++++||+++..+++|+++|++|..++.+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999999999999999999999999999987654
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.68 E-value=3.4e-16 Score=131.89 Aligned_cols=154 Identities=8% Similarity=0.012 Sum_probs=108.7
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHH
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGL 81 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 81 (239)
+.+++|+|+++++++++|||++++ ++++++++++|+.++.. +. .+. ..
T Consensus 102 l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~---~~------------------~~~-----~~ 149 (256)
T TIGR00688 102 GYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIV---LK------------------GSL-----PW 149 (256)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHH---Hc------------------CCc-----hH
Confidence 357899999999999999999999 99999999999998772 10 000 13
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVV 161 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l 161 (239)
+.+.++++|+.|.+..||..++. ........ +.......+.... ..........+...|..+++.|++ +.++|.+
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l 224 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNTD--LAGFCLET-LSLMPVAIYYLLQ-TDFATVQQTNPFPIWLLLVLAGLI-TGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCC--cchHHHHH-HHHHHHHHHHHHH-hccCcccccCchhHHHHHHHHHHH-HHHHHHH
Confidence 57889999999999999875432 22221111 1111111111111 111111111122367788888885 8899999
Q ss_pred HHHhhcccCceEEeeccchHHHHHHHHHHHH
Q 026401 162 HTFGLRMKGPVYTAIFKPLSIAIAAITSFIF 192 (239)
Q Consensus 162 ~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~ 192 (239)
|++++|+.++++++++.|++|+++++++.+.
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999764
No 17
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.62 E-value=1.7e-14 Score=124.62 Aligned_cols=200 Identities=17% Similarity=0.177 Sum_probs=155.7
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
+..|+++++++.+++|+|.+++ ++.++++..+|+.+..+.+..... ........+..|.+++
T Consensus 98 s~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~------------~~~~~~~~~~~G~~ll 159 (303)
T PF08449_consen 98 SSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS------------SSNSSSFSSALGIILL 159 (303)
T ss_pred hhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc------------ccccccccchhHHHHH
Confidence 4679999999999999999999 999999999999998852211111 0011122233599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHh--ccCCCc--ccccCCchhHHHHHHHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFV--GESNLS--AWRLKPDIELASIVYSAFFGLSFI 158 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~--~~~~~~~~~~~~l~~~gi~~~~~~ 158 (239)
+.+.++.+...+.+++..+++. ++....++...++.+..++.... .....+ ......+..+..++...+ ++.++
T Consensus 160 ~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g 238 (303)
T PF08449_consen 160 LLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999887764 57788899999998888877766 222111 111111223444444444 67788
Q ss_pred HHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccccc
Q 026401 159 TVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAND 222 (239)
Q Consensus 159 ~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~ 222 (239)
....++..++.++...++...+.-+++++++++++|+++++.+|+|.++++.|..+..+.|+|+
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 8888899999999999999999999999999999999999999999999999999998877764
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.61 E-value=1.1e-14 Score=124.95 Aligned_cols=182 Identities=12% Similarity=0.112 Sum_probs=136.4
Q ss_pred chHHHHHHHHHHhhhcceeecccccchh----hhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHH
Q 026401 5 LTPGFTFILAIIFRMENLALSSLSTWAK----IIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGG 80 (239)
Q Consensus 5 ~~P~~~~~la~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (239)
++|++..+.+.+++|||.+++ + .+|++++++|+.++.. ..++.. .++ ...+...|.
T Consensus 95 ~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~-~~~~~~------------~~~-~~~~~~~Gi 154 (290)
T TIGR00776 95 FQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSR-SKDKSA------------GIK-SEFNFKKGI 154 (290)
T ss_pred HHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEe-cccccc------------ccc-cccchhhHH
Confidence 778889999999999999999 8 9999999999988762 111000 000 002234799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHH---HHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 81 LLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCL---FATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 81 l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
++.+.++++|+.|.+..|+. ++ +|....+.+.. .+++...+.. . .. .++. .+..+..+..|++ ..+
T Consensus 155 ~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~-~--~~-~~~~---~~~~~~~~~~Gi~-~~i 223 (290)
T TIGR00776 155 LLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH-I--LA-KPLK---KYAILLNILPGLM-WGI 223 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH-h--cc-cchH---HHHHHHHHHHHHH-HHH
Confidence 99999999999999999975 46 57777444433 3333322221 1 00 1111 1233334448887 799
Q ss_pred HHHHHHHhhc-ccCceEEeeccchHHHHHHHHHHHHhcCccchhhH----HHHHHHHHhhhhhhc
Q 026401 158 ITVVHTFGLR-MKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSV----IGGVITCVGFYTVLW 217 (239)
Q Consensus 158 ~~~l~~~a~~-~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~----~G~~li~~gi~~~~~ 217 (239)
++.+|..+.+ +.++++++.+.+.+|+.+.+++++++||+.++.++ +|+++++.|+.+...
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999999999999999 999999999887644
No 19
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.59 E-value=4.1e-15 Score=110.84 Aligned_cols=125 Identities=15% Similarity=0.268 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026401 88 LLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLR 167 (239)
Q Consensus 88 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~ 167 (239)
++|+.+.+..|+..++. |+...+.+++..+++ +++......... ....+...+..+++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 46899999999999998 599999999999998 666665544322 12223346777888888888999999999999
Q ss_pred ccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 168 MKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 168 ~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
+.++++++++.+++|+++.+++++++||++++.+++|+++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 20
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.59 E-value=3.9e-14 Score=115.57 Aligned_cols=166 Identities=16% Similarity=0.106 Sum_probs=131.8
Q ss_pred hhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHH
Q 026401 32 KIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVT 111 (239)
Q Consensus 32 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~ 111 (239)
....+.+++.|+.++.- .++. ...-.-.|..+++.++.+|+.|.+..||.-+..+ .-.-.
T Consensus 121 d~vwvaLAvlGi~lL~p-~~~~------------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~ 180 (292)
T COG5006 121 DFVWVALAVLGIWLLLP-LGQS------------------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGV 180 (292)
T ss_pred hHHHHHHHHHHHHhhee-ccCC------------------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHH
Confidence 66788889999998881 1111 1112238999999999999999999999886664 67777
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHH
Q 026401 112 LLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFI 191 (239)
Q Consensus 112 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~ 191 (239)
...+.+++++.+|+...... +.-++ +.-...-+..+++++.+.|.+=..+++|.++...+.+.+++|.++.+.+++
T Consensus 181 a~gm~vAaviv~Pig~~~ag-~~l~~---p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i 256 (292)
T COG5006 181 AVGMLVAALIVLPIGAAQAG-PALFS---PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLI 256 (292)
T ss_pred HHHHHHHHHHHhhhhhhhcc-hhhcC---hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHH
Confidence 88889999999999874221 21121 224455667889999999999999999999999999999999999999999
Q ss_pred HhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 192 FLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 192 ~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
++||++++.||+|.++|+.+..=..+..||
T Consensus 257 ~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 257 FLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 999999999999999999877654444333
No 21
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.56 E-value=7.8e-14 Score=116.32 Aligned_cols=180 Identities=7% Similarity=0.039 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
+..|++.++++.+++|||+++. |+++++++.+|+..... +. ++.. ...
T Consensus 106 ~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~-~~--------------------g~lp-----wva 153 (293)
T COG2962 106 FINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTW-LL--------------------GSLP-----WVA 153 (293)
T ss_pred HHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHH-Hc--------------------CCCc-----HHH
Confidence 5689999999999999999999 99999999999999884 11 1112 355
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHT 163 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~ 163 (239)
+.-++.|+.|..+.|+. ++ |+..-.+.-++.-....+.+.+..+.........+...+..++..|. .|.+...++.
T Consensus 154 l~la~sf~~Ygl~RK~~--~v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~ 229 (293)
T COG2962 154 LALALSFGLYGLLRKKL--KV-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHHhc--CC-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHH
Confidence 66678899999887764 34 34444444444444444444444333221011112345777778888 6889999999
Q ss_pred HhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccc
Q 026401 164 FGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 164 ~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
.+-|+.+-+..+.++|++|..-.+++.+++||+++..+++.-++|-.|+.++..+.
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987643
No 22
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.49 E-value=3.2e-14 Score=116.24 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=145.7
Q ss_pred HHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHHHHHH
Q 026401 9 FTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNL 88 (239)
Q Consensus 9 ~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~s~~ 88 (239)
.+.+++|+++|.|.++. ++.|+++|+.|++++++ .|.|+++..++.+..+|+.+.+.++-
T Consensus 117 ~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~--------------sDV~agd~aggsnp~~GD~lvi~GAT 176 (336)
T KOG2766|consen 117 CVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVF--------------SDVHAGDRAGGSNPVKGDFLVIAGAT 176 (336)
T ss_pred HHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEE--------------eeeccccccCCCCCccCcEEEEecce
Confidence 46788999999999999 99999999999999994 13455555556677799999999999
Q ss_pred HHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026401 89 LISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRM 168 (239)
Q Consensus 89 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~~ 168 (239)
+||+.++....+.++. |...++.+..++|+++..+-..+...+....+. .... .......++...-|.+.-..+|.
T Consensus 177 lYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w--~~~i-~~yl~f~L~MFllYsl~pil~k~ 252 (336)
T KOG2766|consen 177 LYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFIFERHHVSTLHW--DSAI-FLYLRFALTMFLLYSLAPILIKT 252 (336)
T ss_pred eeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhhhccceeeEee--hHHH-HHHHHHHHHHHHHHHhhHHheec
Confidence 9999999999999999 599999999999999998885442222222221 1111 22222334555566677788899
Q ss_pred cCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 169 KGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 169 ~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
.+++...+-..+.-.+++++ ..+|-+.+|..++..+.+..|..++..+
T Consensus 253 ~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 253 NSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred CCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 99999999999999999999 5688889999999999999999888543
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.4e-12 Score=105.57 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=155.4
Q ss_pred chHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHH
Q 026401 5 LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLL 84 (239)
Q Consensus 5 ~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l 84 (239)
.-|+=+++++.++.+.+.+++ +...++..+.|+.+.. |+.+...+ ..+.....|.++++
T Consensus 120 cKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~g--------------~e~~t~g~GElLL~ 178 (337)
T KOG1580|consen 120 CKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVGG--------------AEDKTFGFGELLLI 178 (337)
T ss_pred CCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccCC--------------CcccccchHHHHHH
Confidence 457888899999999999999 9999999999999988 56554432 12334558999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCCc--ccccCCchhHHHHHHHHHHHHHHHHHH
Q 026401 85 ISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLS--AWRLKPDIELASIVYSAFFGLSFITVV 161 (239)
Q Consensus 85 ~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gi~~~~~~~~l 161 (239)
.|--.-+.....+.|..+++- ....++++..+.+++.+..-.+++....+ -+....+..|+.+...++ ++.+++++
T Consensus 179 lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~f 257 (337)
T KOG1580|consen 179 LSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWF 257 (337)
T ss_pred HHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHH
Confidence 999999999999998877762 46788889999999887766665443221 122223456778888888 78899999
Q ss_pred HHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhh
Q 026401 162 HTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTV 215 (239)
Q Consensus 162 ~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~ 215 (239)
.+..+...||..-|+++...-.|+++.|.++++++++..||+|.++++.++..=
T Consensus 258 IF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 258 IFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999998763
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.27 E-value=5.6e-12 Score=108.30 Aligned_cols=188 Identities=13% Similarity=0.214 Sum_probs=149.7
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
.++|+++.++++++.+|+.+.+ .+..++....|+.+-.. . +... ...|.+.+
T Consensus 117 a~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~---~------------------e~~f-n~~G~i~a 168 (316)
T KOG1441|consen 117 ALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV---T------------------ELSF-NLFGFISA 168 (316)
T ss_pred hhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee---c------------------cccc-cHHHHHHH
Confidence 5789999999999999999999 99999999999988772 1 1122 24899999
Q ss_pred HHHHHHHHHHHHHHHHHhh----hcCchHHHHHHHHHHHHHHHH-HHHHhccCCCc------ccccCCchhHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMK----LYPAEFVVTLLYCLFATIISA-PICFVGESNLS------AWRLKPDIELASIVYSAF 152 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~----~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~gi 152 (239)
+.+.+..+..+++.|+..+ +. |++....++.-++.+.++ |+....+++.. .|+. ....+++..
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s- 242 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFV----TFLILLLNS- 242 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccch----hhHHHHHHH-
Confidence 9999999999999999884 24 688888898889999888 77665444322 2332 122233332
Q ss_pred HHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccccc
Q 026401 153 FGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEAG 225 (239)
Q Consensus 153 ~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~~~ 225 (239)
++.......-+..+.+++|.+-++.+.+--++.++.|+++++|+.++.+..|+++-+.|++.+.+.|.+++++
T Consensus 243 v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 243 VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 2344444556678899999999999999999999999999999999999999999999999998877765543
No 25
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.25 E-value=9.3e-11 Score=100.94 Aligned_cols=140 Identities=9% Similarity=0.052 Sum_probs=110.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCc-ccccCCchhHHHHHHHHHH
Q 026401 75 RWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLS-AWRLKPDIELASIVYSAFF 153 (239)
Q Consensus 75 ~~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gi~ 153 (239)
+...|.++++.+++.|+...+..|.. .+++ |..+.+++++++.+.+.+......+... .....+...+ .....+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FMLAVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HHHHHHHH
Confidence 34589999999999999999999875 6774 9999999999998877766543221110 0000011122 33345666
Q ss_pred HHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 154 GLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 154 ~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
.....+.++++++++.++++++++.++.|++..+++++++||+++..+++|+++.+.|+.+...
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999988753
No 26
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.24 E-value=2.1e-10 Score=98.03 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHH
Q 026401 81 LLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 81 l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 160 (239)
++.+.++++||.+.+..||..++.+ +. ..+.+..+++.++++...... ...|+..+ ..++..+..+.+.....+.
T Consensus 4 ~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 4 TLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHHH
Confidence 5788999999999999998877763 43 355556666666666654211 12233222 2344444445557788899
Q ss_pred HHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 161 VHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 161 l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
++++++++.+++.++++.++.|+++.+++++++||+++..+++|+++++.|+++...
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999988764
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.17 E-value=3.4e-10 Score=95.31 Aligned_cols=137 Identities=9% Similarity=0.084 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCC---cccccCCchh-HHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNL---SAWRLKPDIE-LASIVYSAFF 153 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~gi~ 153 (239)
.|.++.+.+++.|+...+..|. ..+. +|..+.+++++++++.+.+......+.. ..++...... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4788999999999999999998 4567 5999999999999888776654322110 1111111122 3345556654
Q ss_pred HHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 154 GLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 154 ~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
..+.+.++++++++.++.+++.+.++.|+++.+++++++||+++..+++|..+.+.|+.+...
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999999999999999999999999999887643
No 28
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.10 E-value=1.2e-09 Score=82.44 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
.|.++.+.+.++-+..+++-|+..++.+ ....... .+ ....... .....++.|+++..+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-----~~-~~~~~~~--------------~p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-----FI-AALLAFG--------------LALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-----HH-HHHHHHh--------------ccHHHHHHHHHHHHH
Confidence 3668888898999999999999888875 2221111 01 0001110 011358889999999
Q ss_pred HHHHHHHhhcccCceEEeeccchHHHHHHHHHHH--HhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 158 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFI--FLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~--~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
++.+|.+++++.+.+.+..+....++...+.++. ++||++++.+++|+++|+.|+++..+.+++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999998888888885 899999999999999999999998764443
No 29
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.10 E-value=1.3e-09 Score=84.40 Aligned_cols=138 Identities=16% Similarity=0.215 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh------cCchHHHHHHHHHHHHHHHHHHHHhccCCCc-c--ccc-----C-Cchh
Q 026401 79 GGLLLLISNLLISVWYIIQTQTMKL------YPAEFVVTLLYCLFATIISAPICFVGESNLS-A--WRL-----K-PDIE 143 (239)
Q Consensus 79 G~l~~l~s~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~--~~~-----~-~~~~ 143 (239)
|.++++.|.++.++++++.|+..++ ..++.....+....+.+.+++..++.+.... . ... . ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5688999999999999999987766 2279999999999999999999888765321 1 100 0 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 144 LASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 144 ~~~l~~~gi~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
+..++..|+ ....-....+..+++.+|...++...+..+..++.|++++||+++..++.|.++.+.|.+.+.|
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 445555555 3445666777889999999999999999999999999999999999999999999999987754
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.95 E-value=1.6e-08 Score=84.75 Aligned_cols=193 Identities=15% Similarity=0.180 Sum_probs=131.0
Q ss_pred CcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHH
Q 026401 3 GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLL 82 (239)
Q Consensus 3 ~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~ 82 (239)
.++-.++|++++++++|+|++++ ||.++++-++|+.+.-. ++.. ...+. ++.....+..+.+...|.++
T Consensus 50 ~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~lv~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~G~~~ 118 (244)
T PF04142_consen 50 SQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVLVQL-SSSQ-SSDNS---SSSSVHHDASNQNPLLGLLA 118 (244)
T ss_pred HhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHheeec-CCcc-ccccc---cccccccccccchhHhHHHH
Confidence 34567899999999999999999 99999999999998763 1111 10000 00000001123456789999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHH
Q 026401 83 LLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVV 161 (239)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l 161 (239)
.+.++++-+...++..+..|+.. +.+..+....+.|.++.++.....+... .........+-...+..++...++=.+
T Consensus 119 vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~-~~~~g~f~G~~~~~~~~i~~~a~gGll 197 (244)
T PF04142_consen 119 VLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSA-ISESGFFHGYSWWVWIVIFLQAIGGLL 197 (244)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccc-cccCCchhhcchHHHHHHHHHHHhhHH
Confidence 99999999999999988887763 3555666666777666666554332211 001111112222334444455555556
Q ss_pred HHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHH
Q 026401 162 HTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVI 207 (239)
Q Consensus 162 ~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~l 207 (239)
....+|+.+...=+....+..+.+.+.+++++|.+++....+|..+
T Consensus 198 va~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 198 VAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 6667888888888888899999999999999999999999999865
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.94 E-value=1e-08 Score=86.18 Aligned_cols=119 Identities=12% Similarity=0.052 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 026401 90 ISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMK 169 (239)
Q Consensus 90 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~~~ 169 (239)
|+...+..|...++..++.....++.+.+.+.+.+..... .+.+.+...+..+.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555667777665444588888898888888777655431 1223555677777778889999999999999
Q ss_pred CceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 170 GPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 170 ~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
++..++++..++|+++.+++++++||++++.+++|+.+.++|+.+...
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999988764
No 32
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.94 E-value=1.7e-08 Score=86.66 Aligned_cols=131 Identities=10% Similarity=0.007 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHH
Q 026401 81 LLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 81 l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 160 (239)
+..+.-.+.|+...+..|...++. +|..+.++++.++++.+++........ . .+.+.+......|++.....+.
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHHHHH
Confidence 446677788999999999888888 599999999999999988876542211 1 1223566667777776667788
Q ss_pred HHHHhh-cccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 161 VHTFGL-RMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 161 l~~~a~-~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
+++.+. ++.+++.++++.++.|+++.+++++ +||+++..+++|.++.++|+++....
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 889998 9999999999999999999999985 79999999999999999999887643
No 33
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.93 E-value=9.2e-09 Score=86.49 Aligned_cols=191 Identities=14% Similarity=0.131 Sum_probs=148.8
Q ss_pred HHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHHHHHHH
Q 026401 10 TFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLL 89 (239)
Q Consensus 10 ~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~s~~~ 89 (239)
+++...+..|.|.+.. +....++.-.|+.+..+++..+ + .....+.+-.+|..++...-++
T Consensus 123 Vmlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s------------~~~~g~~ns~~G~~Ll~~~L~f 183 (327)
T KOG1581|consen 123 VMLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-S------------SSKSGRENSPIGILLLFGYLLF 183 (327)
T ss_pred HHHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-C------------ccccCCCCchHhHHHHHHHHHH
Confidence 5677889999999999 9999999999998888532221 1 1112333455899999999999
Q ss_pred HHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCC-c--ccccCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 026401 90 ISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNL-S--AWRLKPDIELASIVYSAFFGLSFITVVHTFG 165 (239)
Q Consensus 90 ~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a 165 (239)
-+..+..++++.+++. ++..++++..+++++......+ ..++. + .+-...++.+.-++.... ++.+++.+.++-
T Consensus 184 DgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li-~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~T 261 (327)
T KOG1581|consen 184 DGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI-LQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYT 261 (327)
T ss_pred HhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhh
Confidence 9999999998887653 5888999999999888776643 23221 1 222222344555666656 677999999999
Q ss_pred hcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 166 LRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 166 ~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
+++.|+.....++.+.-.++++++.+.+|.+++..|++|..+++.|+..-...|++
T Consensus 262 I~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 262 IERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986665555
No 34
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.3e-07 Score=78.64 Aligned_cols=198 Identities=16% Similarity=0.153 Sum_probs=134.6
Q ss_pred chHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCC-CCCCCCCCchHHHHHHH
Q 026401 5 LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLH-WTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 5 ~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~l~~ 83 (239)
-+++-++.++|++.|.|.+.+ |+.++++.-+|+++-.+...++... ..++.. .+..+....|.+|..++
T Consensus 100 gsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~----~~~~l~~~~~~~~~~~w~iGi~lL 169 (330)
T KOG1583|consen 100 GSLLANMILGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS----KLSGLDSGSAQSDFFWWLIGIALL 169 (330)
T ss_pred CcHHHHHHHHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh----hhcccccCcccccchHHHHHHHHH
Confidence 467889999999999999999 9999999999999988654433322 000111 11223345677899888
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCC-cc----ccc----------CCchhHHHH
Q 026401 84 LISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNL-SA----WRL----------KPDIELASI 147 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~----~~~----------~~~~~~~~l 147 (239)
..+-+.-|.-.+.+.+.-+++. ++-...++.-+.+. |..++...+. ++ +.. .-+..|+.+
T Consensus 170 ~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsL----P~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yL 245 (330)
T KOG1583|consen 170 VFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSL----PLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYL 245 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhcc----chHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHH
Confidence 8888888877777776666654 45556566555443 3333222210 00 110 012345445
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 148 VYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 148 ~~~gi~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
+.-.+ ....|---.+..-.+..+-++++...+.-.++.++|...++++++++.|+|..++++|-.++..
T Consensus 246 l~n~L-~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 246 LFNVL-TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHH-HHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44333 3444444445556677888999999999999999999999999999999999999999888653
No 35
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.89 E-value=2.3e-08 Score=88.26 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
.-.+.++..-++|+.+.++.|...++--++....++++.+++++++++.+..++.. .++..+...|..+...|++. .+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~ 90 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SM 90 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HH
Confidence 45567778888999999999987766447999999999999999998887543211 11111123456677777766 45
Q ss_pred HHHHHHHhhcccCceEEeeccchHHHHHHHHHHHH------hcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 158 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIF------LSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~------lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
.+.+++.++++++++.++++.++.|+++.++++++ ++|+++..+++|.++-+.|+.+....
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 66689999999999999999999999999999999 69999999999999999999887653
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.88 E-value=5.3e-09 Score=77.25 Aligned_cols=108 Identities=15% Similarity=0.260 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHH
Q 026401 113 LYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIF 192 (239)
Q Consensus 113 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~ 192 (239)
+.+.++.+.+...........+.++......+...+..|+++...++.+++++.++.++ .++++..+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555556555555543221111111112345566666776667899999999999995 88899999999999999999
Q ss_pred hcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 193 LSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 193 lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
++|+++..++.|+.++++|+.+..+.+-+
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998775443
No 37
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.87 E-value=3.7e-08 Score=84.90 Aligned_cols=126 Identities=6% Similarity=0.016 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHH
Q 026401 81 LLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 81 l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 160 (239)
++.+.+++.|+...+..|...++. +|..+.++++.++++.++++.. .. .. .+..+...|+......+.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~---~~--~~------~~~~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA---RP--KV------PLNLLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc---CC--CC------chHHHHHHHHHHHHHHHH
Confidence 568889999999999999988888 5999999999988776554431 11 11 111233445544445555
Q ss_pred HHHHhhcc-cCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 161 VHTFGLRM-KGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 161 l~~~a~~~-~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
+++.+.++ .++..++++..+.|+++.+++++++||+++..+++|+++.++|+.+....
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 77778877 57789999999999999999999999999999999999999999887743
No 38
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.82 E-value=3.9e-07 Score=78.54 Aligned_cols=201 Identities=13% Similarity=0.162 Sum_probs=137.5
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
++--+-|+++..+++++|++++ ||.++++.+.|+.++-. +..... .+.......+...|....
T Consensus 126 qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~---~~~~~~--------~a~~~~~~~n~~~G~~av 188 (345)
T KOG2234|consen 126 QLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQL---PSLSPT--------GAKSESSAQNPFLGLVAV 188 (345)
T ss_pred hHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhc---cCCCCC--------CccCCCcccchhhhHHHH
Confidence 3445778999999999999999 99999999999988662 111100 001112334456899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVH 162 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~ 162 (239)
+.+++.-+...++..+..|+-. +-+.-+....++|.++.+...+........|. .....|-...+..++..+++=.+.
T Consensus 189 l~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~-gff~G~s~~vw~vVl~~a~gGLlv 267 (345)
T KOG2234|consen 189 LVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEY-GFFYGYSSIVWLVVLLNAVGGLLV 267 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccC-CccccccHHHHHHHHHHhccchhH
Confidence 9998888888888887775532 46667777777887777766654332211111 111122233444444444444455
Q ss_pred HHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccccc
Q 026401 163 TFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAND 222 (239)
Q Consensus 163 ~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~ 222 (239)
..-+|+.+-..=+....+..+++.+.++.++|-+++....+|..+++.++.++...+.++
T Consensus 268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 268 SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 555666666655666678889999999999999999999999999999999998666654
No 39
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.77 E-value=1.2e-07 Score=81.55 Aligned_cols=131 Identities=11% Similarity=0.030 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
.+.++++.+++.|+...+..|...++.| |.....+++..++++++++.. .+ ..+ ...+..++. +.+....
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~---~~--~~~---~~~~~~~~~-~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG---FP--RLR---QFPKRYLLA-GGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc---cc--ccc---cccHHHHHH-HhHHHHH
Confidence 4567899999999999999999999995 999999999999888776531 11 111 011212222 3323334
Q ss_pred HHHHHHHhh----cccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 158 ITVVHTFGL----RMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 158 ~~~l~~~a~----~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
.+.+++.++ ++.++.+++++.++.|+++.++++++++|++++.+++|+++.++|+++....
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 444555555 4567788889999999999999999999999999999999999999887653
No 40
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.71 E-value=8.4e-08 Score=79.14 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=121.6
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccc------cCCCCCCccCCCCCCCCCCchH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIM------STASIPAQSLHWTPQSTRSRWV 77 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 77 (239)
+..|+++++..+.+.++|.+.. |+++.++...|++.-.+.+.+... .....+.++.+ .......+..
T Consensus 12 s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~-~~~~~~g~~~ 84 (222)
T TIGR00803 12 QNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSS-AKTLMFGNPV 84 (222)
T ss_pred hcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCC-ccccccccHH
Confidence 4678999999999999999988 999999999998753321110000 00000000000 0001112445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCch-HHHHHHHHHHHHHHHHHHHHhccCCC-cccccCCchhHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAE-FVVTLLYCLFATIISAPICFVGESNL-SAWRLKPDIELASIVYSAFFGL 155 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~gi~~~ 155 (239)
.|....+.+.++-+...+..++..++.... ..-+....+.+.+............. ..+.. ...+-...+.-++..
T Consensus 85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 162 (222)
T TIGR00803 85 VGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF--FIGYPTAVWIVGLLN 162 (222)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCc--ccCCchHHHHHHHHH
Confidence 677777777777777777777765554211 11111222222222121111111111 11110 001111222223356
Q ss_pred HHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhh
Q 026401 156 SFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYT 214 (239)
Q Consensus 156 ~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~ 214 (239)
.++..+..+.+|+.++...+....++++++.+++++++||+++..++.|+.+++.|+++
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 78888899999999999999999999999999999999999999999999999998765
No 41
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.70 E-value=7.1e-07 Score=75.33 Aligned_cols=185 Identities=17% Similarity=0.212 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
+.+++|+.+++.++.-||+++. -..-+.+...|+++.+ +++.+ . ...|..+.
T Consensus 118 SSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsTq--------------------f-~i~Gf~lv 169 (349)
T KOG1443|consen 118 SSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKSTQ--------------------F-NIEGFFLV 169 (349)
T ss_pred ccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecccc--------------------e-eehhHHHH
Confidence 5689999999999999999998 7777888888888877 33221 1 23677777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC----chHHHHHHHHHHHHHHHHHHHHhccCCCc-----ccccCCc-hhHHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMKLYP----AEFVVTLLYCLFATIISAPICFVGESNLS-----AWRLKPD-IELASIVYSAFF 153 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~-~~~~~l~~~gi~ 153 (239)
+.+.++-++...+.+...++.| +|+.......-.-.+.++|..+..|+... .|+.... ..+..+...+.
T Consensus 170 ~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l- 248 (349)
T KOG1443|consen 170 LAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL- 248 (349)
T ss_pred HHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-
Confidence 7777766666665555554432 57777666666667777888877776421 2222211 12222222222
Q ss_pred HHHHHHHH---HHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 154 GLSFITVV---HTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 154 ~~~~~~~l---~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
++..++.+ =+....+++..+.++..-..-+.+.+++..+.+|+++...|.|..+...|+...-+
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 33333332 23456788999999999999999999999999999999999999999999988833
No 42
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.64 E-value=3.8e-07 Score=78.64 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=94.7
Q ss_pred HHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhcccCce
Q 026401 93 WYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPV 172 (239)
Q Consensus 93 ~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~~~~~~ 172 (239)
++++.|...++.+.|...+..++..+.+...+........... .+..+|..++..|++ ....+.+.++++++.+++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLK---ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHH
Confidence 3456788888755699999999998877665542111111111 123467778888886 467788999999999999
Q ss_pred EEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 173 YTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 173 ~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
..+++..+.|+++.++++++++|+++..+++|.++++.|+.+..
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999997754
No 43
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.4e-07 Score=78.38 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=143.4
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
++.-+|+.++...++|||-++. ...+..+.+.|-.+=+ |.+.. .+.--..|.++.
T Consensus 136 sLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv--dqE~~-----------------~~~ls~~GvifG 190 (347)
T KOG1442|consen 136 SLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV--DQEGS-----------------TGTLSWIGVIFG 190 (347)
T ss_pred chhhhHHHHhHHhhcccccccc------cceeehhheehheecc--ccccc-----------------cCccchhhhHHH
Confidence 3566899999999999999998 7777777777765544 22211 122224899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCCcccc---cCCchhHHHHHHHHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSAWR---LKPDIELASIVYSAFFGLSFIT 159 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~~~ 159 (239)
+.+.++-|+..+..|+...... .-+.++.+..+.+.+..+|...+.+.-...+. .+....|+.+...|+++..++|
T Consensus 191 VlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy 270 (347)
T KOG1442|consen 191 VLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY 270 (347)
T ss_pred HHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999997654442 35788889999999988888876543222221 1123456667677776655555
Q ss_pred HHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccccc
Q 026401 160 VVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEAG 225 (239)
Q Consensus 160 ~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~~~ 225 (239)
.- .+=+|-.+|.+-.+-....-..=.+++..+++|.-+..-|-|-+++++|-..+.+.|+.++++
T Consensus 271 vT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 271 VT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred ee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 42 134577888888888888888888999999999999999999999999998888877665443
No 44
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.64 E-value=9.8e-07 Score=77.83 Aligned_cols=125 Identities=12% Similarity=0.191 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 026401 91 SVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKG 170 (239)
Q Consensus 91 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~~~~ 170 (239)
..+++..|...++.|-|+.++.++++++.+.+.++............ .....+..++..|++.. ..+...+.++++.+
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~~~~~~sl~~~s 139 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVHFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence 44567888888888449999999999998776554322111111111 01234566777888554 45777789999999
Q ss_pred ceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 171 PVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 171 ~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
++.+.++..++|++++++++++++|+++..+++|+++++.|+.+...
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999999999999998764
No 45
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.3e-06 Score=74.32 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=145.4
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
+.+|+++++....++|.|++.+ .+.++..-.+|...... ++. .....|..++
T Consensus 111 n~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~---~d~-------------------sf~~~gY~w~ 162 (314)
T KOG1444|consen 111 NLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAF---TDL-------------------SFNLRGYSWA 162 (314)
T ss_pred hchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcc---ccc-------------------eecchhHHHH
Confidence 5789999999999999999999 99999998888877662 111 1112489999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccC-C-----CcccccCCchhHHHHHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGES-N-----LSAWRLKPDIELASIVYSAFFGLS 156 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~-~-----~~~~~~~~~~~~~~l~~~gi~~~~ 156 (239)
+...+.-+.+.+..|+..+... +.+...++..+.+...+....++++. + .+.|. ....+..+...++++-+
T Consensus 163 ~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~--~~~~~~~~~lScv~gf~ 240 (314)
T KOG1444|consen 163 LANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS--DSSVLVVMLLSCVMGFG 240 (314)
T ss_pred HHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc--chhHHHHHHHHHHHHHH
Confidence 9999999999999998764432 34567788888888888877766553 1 11232 12346677777776655
Q ss_pred HHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccccccccc
Q 026401 157 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEAGK 226 (239)
Q Consensus 157 ~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~~~~ 226 (239)
+.|. -.+..+..+++..++.....-..+.+...++.|++.++...+|..+-+.|-.++.+.+.++++.+
T Consensus 241 isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 241 ISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 5554 44678889999999999888888888888888899999999999999999999988775554443
No 46
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.60 E-value=2e-07 Score=68.64 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 151 AFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 151 gi~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
++++.+.++.++.+++++.+.+.+..+.++.++++.+.|++++||++++.+++|.++++.|+++..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999999999999999999999999998764
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.53 E-value=4.6e-06 Score=70.28 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=122.0
Q ss_pred chHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHH
Q 026401 5 LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLL 84 (239)
Q Consensus 5 ~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l 84 (239)
++=+.+.+++.++++|.-+.+.+.- -..++++.++|+.+-.. +.++. +..+++.+...|.+.++
T Consensus 81 ~QLvg~sl~gv~~fgEW~~~~~~~~--G~~Al~liiiGv~lts~-~~~~~-------------~~~~~~~~~~kgi~~Ll 144 (269)
T PF06800_consen 81 LQLVGTSLIGVLFFGEWTTTTQKII--GFLALVLIIIGVILTSY-QDKKS-------------DKSSSKSNMKKGILALL 144 (269)
T ss_pred HHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHHHHHHhcc-ccccc-------------cccccccchhhHHHHHH
Confidence 3445688899999999888761110 23477788888887663 22110 00112344567999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 026401 85 ISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTF 164 (239)
Q Consensus 85 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~ 164 (239)
++.+.|..|.+..|. .+. |+....+-+.+--.+..+.+..+...... . ...| .=+..|+ .=.++-.+|..
T Consensus 145 ~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~a~i~~~~~~~~~~--~---k~~~-~nil~G~-~w~ignl~~~i 214 (269)
T PF06800_consen 145 ISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIGAFIFNLFSKKPFF--E---KKSW-KNILTGL-IWGIGNLFYLI 214 (269)
T ss_pred HHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHHHHHHhhccccccc--c---cchH-HhhHHHH-HHHHHHHHHHH
Confidence 999999999999875 345 46666665544333333333433211111 1 1122 2233344 34577788889
Q ss_pred hhcccCceEEeeccchHHHHHHHHHHHHhcCccchh----hHHHHHHHHHhhhh
Q 026401 165 GLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLG----SVIGGVITCVGFYT 214 (239)
Q Consensus 165 a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~----~~~G~~li~~gi~~ 214 (239)
+.++.|.+..=.+..+.++++.+.+.+++||+=+.. .++|.++++.|.++
T Consensus 215 s~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 215 SAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999997654 45688888887653
No 48
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.49 E-value=7.4e-07 Score=70.89 Aligned_cols=190 Identities=15% Similarity=0.202 Sum_probs=129.1
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
...--|+.+++|+.+|||+.-. |+.+.++++.|++++.+.+. ...+.++|..++
T Consensus 87 ~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN--------------------~~a~e~iGi~~A 140 (290)
T KOG4314|consen 87 ACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN--------------------EHADEIIGIACA 140 (290)
T ss_pred HhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc--------------------hhhhhhhhHHHH
Confidence 3456789999999999999999 99999999999999884211 223446899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHH---H-HHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATI---I-SAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFIT 159 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i---~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~ 159 (239)
++|+..-|+|.+..|+...+.+ --...-++...|.. + ..|.........++|+..-..-|..+...+.+.- ---
T Consensus 141 V~SA~~aAlYKV~FK~~iGnAn-~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~l-AFN 218 (290)
T KOG4314|consen 141 VGSAFMAALYKVLFKMFIGNAN-FGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSL-AFN 218 (290)
T ss_pred HHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHH-HHh
Confidence 9999999999999999876653 11222222222211 1 1111111111223344222223555655544332 222
Q ss_pred HHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 160 VVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 160 ~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
.+.+.++....|-..|+-+.+..+-......++.+-..+.....|..+|.+|..+......+
T Consensus 219 ~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 219 FLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred hheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 35678888889999999888888888889988777778888899999999998887664443
No 49
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.48 E-value=4e-06 Score=70.93 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHH
Q 026401 77 VIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLS 156 (239)
Q Consensus 77 ~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 156 (239)
..+....+..++.|+......|...++............+.+.+...+.... +. ....+.. ..+......+.+...
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~~ 81 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EP-RGLRPAL--RPWLLLLLLALLGLA 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hc-ccccccc--cchHHHHHHHHHHHH
Confidence 3677888888899999999999887763224455454666666553222221 11 1111111 113455666666888
Q ss_pred HHHHHHHHhhcccCceEEeeccchHHHHHHHHHH-HHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 157 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSF-IFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 157 ~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~-~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
..+.+|+.++++.++..+..+.++.|++..++++ ++++|+++..++.|..+.+.|+.+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 9999999999999999999999999999999997 7679999999999999999999998765544
No 50
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.44 E-value=2.4e-06 Score=73.39 Aligned_cols=132 Identities=13% Similarity=0.036 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHH
Q 026401 79 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFI 158 (239)
Q Consensus 79 G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 158 (239)
|.+++++++++|+...+..|+.. +.+ +.... ...++.+...........+. .. ....+..-+..|. .-.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLPE--FW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc--cc--ccHHHHHHHHHHH-HHHhh
Confidence 46789999999999999999865 443 33333 34555555444433322111 11 1112222223333 35678
Q ss_pred HHHHHHhhcccCceEEeeccc-hHHHHHHHHHHHHhcCccchhh----HHHHHHHHHhhhhhhccc
Q 026401 159 TVVHTFGLRMKGPVYTAIFKP-LSIAIAAITSFIFLSEALHLGS----VIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 159 ~~l~~~a~~~~~~~~~s~~~~-l~Pv~a~l~~~~~lgE~~~~~~----~~G~~li~~gi~~~~~~~ 219 (239)
+.+|+.++|+.|.+.+-.+.+ ++++++.+++.+++||+.+..+ ++|.+++++|+++....+
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 899999999999999988888 8999999999999999999999 999999999988875543
No 51
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.34 E-value=5.7e-06 Score=69.65 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cCCchhHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWR-LKPDIELASIVYSAFFGLS 156 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~ 156 (239)
.|.++.+.+-+.|+.--.+.|-. ++.| +..+.....+.+...++.......+...-++ ...+..+..+...+.. ..
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i~ 83 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-IG 83 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-HH
Confidence 68999999999999998888765 5664 8899999999998887776655433222122 1123456666666664 45
Q ss_pred HHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 157 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 157 ~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
..+.+|.|+..+....++|+--++.|.+.++.|.++++|+++..|++..++-.+|+....+...
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999988765443
No 52
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.28 E-value=3.1e-06 Score=70.45 Aligned_cols=185 Identities=16% Similarity=0.201 Sum_probs=135.2
Q ss_pred HHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHHHHHHHH
Q 026401 11 FILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLI 90 (239)
Q Consensus 11 ~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~s~~~~ 90 (239)
++.+.++-+.|.... .+++..+-.+|.++..+.|.. .+ .++ ..+|..+.-++-++-
T Consensus 147 miggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~--~s---------------PNF-~~~Gv~mIsgALl~D 202 (367)
T KOG1582|consen 147 MIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ--TS---------------PNF-NLIGVMMISGALLAD 202 (367)
T ss_pred hheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc--cC---------------CCc-ceeeHHHHHHHHHHH
Confidence 445566777777777 999999999999998863221 11 122 237999988888998
Q ss_pred HHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCCCcccccC---CchhHHHHHHHHHHHHHHHHHHHHHhh
Q 026401 91 SVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSAWRLK---PDIELASIVYSAFFGLSFITVVHTFGL 166 (239)
Q Consensus 91 a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~~l~~~a~ 166 (239)
|.-..++.+..+..| +...+.++...+|.+.++....++..-.+.|..- +.+......+... .+.++.......+
T Consensus 203 A~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI 281 (367)
T KOG1582|consen 203 AVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALI 281 (367)
T ss_pred HHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHH
Confidence 888888888777765 3456667777788777776666544332222211 1112222333323 5667777777888
Q ss_pred cccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 167 RMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 167 ~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
+..|+..++.++...--+++++|++++..+++....-|..+++.|+++..+.|+
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999999999887764
No 53
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.25 E-value=4.5e-06 Score=72.02 Aligned_cols=201 Identities=14% Similarity=0.163 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHH
Q 026401 5 LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLL 84 (239)
Q Consensus 5 ~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l 84 (239)
+.-++.++++.+++|||++++ .+.|.++++.|..+++. .+|.-.... +.++.. ..-.+..+ +......
T Consensus 85 ~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~-~~~~~~~~~--t~~~l~--~~~~~~~f-l~y~~~~ 152 (300)
T PF05653_consen 85 LSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI-FAPKEEPIH--TLDELI--ALLSQPGF-LVYFILV 152 (300)
T ss_pred hhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE-eCCCCCCcC--CHHHHH--HHhcCcce-ehhHHHH
Confidence 445788999999999999999 99999999999998884 333211100 000000 00001111 1111111
Q ss_pred HHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHH---HHH-hccCCCcccccCCchhHHHHHHHHHHHHHHHHH
Q 026401 85 ISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAP---ICF-VGESNLSAWRLKPDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 85 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 160 (239)
.... ..+.....+|..++ +.........++|+...+. ... +.+....+.+..++..|..++. -+.+...+..
T Consensus 153 ~~~~-~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~-~v~~~~~Q~~ 228 (300)
T PF05653_consen 153 LVLI-LILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLV-LVVTAVLQLY 228 (300)
T ss_pred HHHH-HHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHH-HHHHHHHHHH
Confidence 1111 12222222221111 1121111112222221111 010 0000000111112234434333 3446778888
Q ss_pred HHHHhhcccCceEEeeccchH-HHHHHHHHHHHhcCcc--ch----hhHHHHHHHHHhhhhhhccccc
Q 026401 161 VHTFGLRMKGPVYTAIFKPLS-IAIAAITSFIFLSEAL--HL----GSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 161 l~~~a~~~~~~~~~s~~~~l~-Pv~a~l~~~~~lgE~~--~~----~~~~G~~li~~gi~~~~~~~~~ 221 (239)
..|+++++.+++.+.++.+.. -..+++-|.++++|.- +. ....|..+++.|+++....|++
T Consensus 229 ~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~ 296 (300)
T PF05653_consen 229 YLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDK 296 (300)
T ss_pred HHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCch
Confidence 999999999999888877655 4556666777888754 33 3456888888999887654433
No 54
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.23 E-value=5.6e-07 Score=74.69 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHH
Q 026401 77 VIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLS 156 (239)
Q Consensus 77 ~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 156 (239)
++|.++.-+| .++....++.++...+ ||....-..++.-.++..|..+... . +...+...-.+++.=|+ .+.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~-~---~v~gp~g~R~~LiLRg~-mG~ 108 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYM-Q---PVIGPEGKRKWLILRGF-MGF 108 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEe-e---eeecCCCcEEEEEeehh-hhh
Confidence 3688888887 7788888888887766 4677766665544444443333211 1 11111112223444455 344
Q ss_pred HHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccc
Q 026401 157 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 157 ~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
.+..+.++++++.+-+.++++++..|+++.+++|.+++|+.+....+|..+.+.|+++..+..
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 777788899999999999999999999999999999999999999999999999999887653
No 55
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.22 E-value=2.6e-05 Score=67.01 Aligned_cols=127 Identities=16% Similarity=0.073 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHH
Q 026401 76 WVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGL 155 (239)
Q Consensus 76 ~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~ 155 (239)
...|..++++++++|+......|...++.| |..+.+++++++++.++++..... . .+ +.+++...+..|.+ .
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~--~-~~---~~~~~~~~~~~g~~-~ 81 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWR--L-RF---AKEQRLPLLFYGVS-L 81 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHh--c-cC---CHHHHHHHHHHHHH-H
Confidence 347889999999999999999999998885 999999999999988876543211 1 11 12455566666664 5
Q ss_pred HHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 156 SFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 156 ~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
...+.++++++++.++..++.+.++.|+++.+++. |++. +..+..+.++|+++..
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheee
Confidence 67788899999999999999999999999988773 5554 3455666778887765
No 56
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.14 E-value=5.2e-05 Score=66.20 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKL-YPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLS 156 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 156 (239)
.+.++.-.-+++-+..+..+..+.++ .+.|..-+++.++.-.++..+...... ....+.......|+..+..++ .=.
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~~~~~~~~~~~w~y~lla~-~Dv 90 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR-GFKKWLKVLKRPWWKYFLLAL-LDV 90 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc-ccccchhhcchhHHHHHHHHH-HHH
Confidence 34444444444444444444333322 223555555555544444443333211 112222222345666666776 556
Q ss_pred HHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 157 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 157 ~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
-+-++.+.|+++++.+.+.++.....+++.++++++++|+.++.+++|+.+.+.|+.++......
T Consensus 91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 89999999999999999999999999999999999999999999999999999999988765543
No 57
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.13 E-value=1.7e-05 Score=66.43 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=131.5
Q ss_pred chHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCC--CCCchHHHHHH
Q 026401 5 LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQS--TRSRWVIGGLL 82 (239)
Q Consensus 5 ~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~l~ 82 (239)
..-+|+.+++.-+++.+++.+ +|.|+....+|++.+-.. | .|...++ .......|+++
T Consensus 121 aviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~--d------------~~~~~~p~~d~s~iitGdll 180 (372)
T KOG3912|consen 121 AVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSL--D------------VHLVTDPYTDYSSIITGDLL 180 (372)
T ss_pred chhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeee--e------------cccccCCccccccchhhhHH
Confidence 345899999999999999999 999999999999887631 1 1111111 22456689999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHHHHHHHHHHHhccCC--CcccccCC---chhHHH---------H
Q 026401 83 LLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESN--LSAWRLKP---DIELAS---------I 147 (239)
Q Consensus 83 ~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~---~~~~~~---------l 147 (239)
.+.+-+.-|+..++..|..++.. +|.....+..++|.+++..+......- ...++-.+ .+.|.. .
T Consensus 181 IiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~ 260 (372)
T KOG3912|consen 181 IIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPS 260 (372)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCch
Confidence 99999999999998877766543 699999999999977666555432211 00111111 011111 1
Q ss_pred HHHHHHHHHHHHHHHH---Hhh-cccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 148 VYSAFFGLSFITVVHT---FGL-RMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 148 ~~~gi~~~~~~~~l~~---~a~-~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
+++...+....-.++| .++ |..++++=.+...+...+-=+++.....|.+...|+.|..+.+.|+.++.
T Consensus 261 l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 261 LAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred hHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223333333 222 45677777788888888888888888899999999999999999999875
No 58
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.01 E-value=0.00011 Score=63.42 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhhhcC-c--hHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026401 91 SVWYIIQTQTMKLYP-A--EFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLR 167 (239)
Q Consensus 91 a~~~v~~k~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~ 167 (239)
..+.+.+++..++.+ . +..+++.++....+...+........... ...+...+..++ ...++..+-+.+++
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSR-----KIPLKKYAILSF-LFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCC-----cChHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344556666555432 3 77889999888888777766543311111 112233344444 56677889999999
Q ss_pred ccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccccc
Q 026401 168 MKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEAG 225 (239)
Q Consensus 168 ~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~~~ 225 (239)
+.+...-.+.-...|+...+++++++|++.+..++++..++.+|+.+....+.+++++
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 9999999999999999999999999999999999999999999999988766554443
No 59
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.99 E-value=2.6e-05 Score=67.26 Aligned_cols=120 Identities=17% Similarity=0.245 Sum_probs=88.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHH
Q 026401 74 SRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFF 153 (239)
Q Consensus 74 ~~~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 153 (239)
.++.+|.++++.|+++.+...+++|+...+.+ ....- .. ....+......| +.|+.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~------------------~~-~~~~~~l~~~~W----~~G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLR------------------AG-SGGRSYLRRPLW----WIGLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccc------------------cc-chhhHHHhhHHH----HHHHH
Confidence 35679999999999999999999999776653 10000 00 000000001122 22333
Q ss_pred HHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 154 GLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 154 ~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
...++..+...++...+++.++++..+.-++..+++..++||+++...+.|+++++.|..+...
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 4456667778899999999999999999999999999999999999999999999999887654
No 60
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.95 E-value=2.5e-05 Score=58.10 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhhcccCceEEeec-cchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccc
Q 026401 151 AFFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 151 gi~~~~~~~~l~~~a~~~~~~~~~s~~-~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
.+.+-.++++++.+++|+.+...+=.+ .-+--+.+.+.+++++||++++.+++|+++|+.|+.......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 344567889999999999888766444 356778889999999999999999999999999998875544
No 61
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.79 E-value=6.9e-05 Score=54.94 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhcccCceEEeec-cchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccc
Q 026401 152 FFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 152 i~~~~~~~~l~~~a~~~~~~~~~s~~-~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
+.+-.++++++..++|+.+...+=.. .-+--+.+.+.+++++||++++.+++|+++|+.|++.....+
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33556788888888888877655333 445677789999999999999999999999999999875433
No 62
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.75 E-value=0.00049 Score=52.57 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHH
Q 026401 80 GLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFIT 159 (239)
Q Consensus 80 ~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~ 159 (239)
.++++.+....++...+..|+.++..||..-+...+..+.+.+....++.... +........|+..+ -|+ .+.+.-
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~-lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGL-LGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHH-HHHHHH
Confidence 46788888889999999999998886699999999999999988888775543 11111111233322 444 455666
Q ss_pred HHHHHhhcccCceEEeec-cchHHHHHHHHHHH----HhcCccchhhHHHHHHHHHhhhh
Q 026401 160 VVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFI----FLSEALHLGSVIGGVITCVGFYT 214 (239)
Q Consensus 160 ~l~~~a~~~~~~~~~s~~-~~l~Pv~a~l~~~~----~lgE~~~~~~~~G~~li~~gi~~ 214 (239)
.+..+..++.|++.+... ..-|-+.+.+++.+ .-++++++.+++|.++++.|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777888899998765544 44567777778775 34577899999999999999863
No 63
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.59 E-value=0.00027 Score=57.59 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=133.9
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHH
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLL 83 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 83 (239)
+++-+.++....+++|.|.+.. .....++-+.-.+.-. -+|... .. ......+.|.+.+
T Consensus 102 NltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~q~------------~~-~~~~~lN~GY~Wm 160 (309)
T COG5070 102 NLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQQA------------SA-FKAQILNPGYLWM 160 (309)
T ss_pred cceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhc--cchhhH------------HH-HHhcccCCceEEE
Confidence 4555667777888999998888 7666665555443322 111110 00 0111334688888
Q ss_pred HHHHHHHHHHHHHHHHHhh--hcCchHHHHHHHHHHHHHHHHHHHHhccCC-Cccccc-CCchhHHHHHHHHHHHHHHHH
Q 026401 84 LISNLLISVWYIIQTQTMK--LYPAEFVVTLLYCLFATIISAPICFVGESN-LSAWRL-KPDIELASIVYSAFFGLSFIT 159 (239)
Q Consensus 84 l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~gi~~~~~~~ 159 (239)
....+.-+.+....|+..+ +. .-...+++..+.+..+++.++++.+.. +.+... .+.....++...|+ ++..--
T Consensus 161 ~~NclssaafVL~mrkri~ltNf-~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiS 238 (309)
T COG5070 161 FTNCLSSAAFVLIMRKRIKLTNF-KDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGIS 238 (309)
T ss_pred ehhhHhHHHHHHHHHHhhccccc-chhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhh
Confidence 8888888888887776432 22 346677888999988888888876642 211111 11123446667777 454555
Q ss_pred HHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccc
Q 026401 160 VVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDE 223 (239)
Q Consensus 160 ~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~ 223 (239)
++-.|-+|-.+.+.-|++..+.-.-..+-|.+++||+.+...+....+-..+..++...|.+++
T Consensus 239 y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 239 YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777889999999999999999999999999999999999999998888877777776555433
No 64
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.57 E-value=3.7e-05 Score=56.60 Aligned_cols=41 Identities=29% Similarity=0.461 Sum_probs=38.4
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhh
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVL 48 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 48 (239)
+.+++|+++.+++++++|||++++ ++.+++++++|++++..
T Consensus 66 i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 66 IFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 356899999999999999999999 99999999999999984
No 65
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.45 E-value=0.0011 Score=48.41 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhcccCceEE-eeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhh
Q 026401 154 GLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTV 215 (239)
Q Consensus 154 ~~~~~~~l~~~a~~~~~~~~~-s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~ 215 (239)
+..++|++...++|+.+...+ ++..-+--+.+.+.+++++||++++.+++|+++|+.|+...
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 557889999999999887554 44445667778889999999999999999999999999865
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.41 E-value=0.025 Score=49.67 Aligned_cols=197 Identities=14% Similarity=0.131 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHhhhcce---eecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCC-CCCCCchHHHHH
Q 026401 6 TPGFTFILAIIFRMENL---ALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTP-QSTRSRWVIGGL 81 (239)
Q Consensus 6 ~P~~~~~la~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~l 81 (239)
+=+...++..++++|-. +-. ....-.+|+++.++|+.+... .+.... ...++ ...+.+...|.+
T Consensus 110 ~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~-Ag~~k~---------~~~~~~~~~~~~~~KGi~ 177 (345)
T PRK13499 110 TLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGR-AGQLKE---------RKMGIKKAEEFNLKKGLI 177 (345)
T ss_pred HHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHH-hhhhcc---------cccccccccccchHhHHH
Confidence 34556677777887654 221 122367899999999999873 111100 00000 023455678999
Q ss_pred HHHHHHHHHHHHH-------HHHHHH-hhhcCchHHHHHHHHH---HHHHHH-HHHHHh---ccCCCc---ccccCCchh
Q 026401 82 LLLISNLLISVWY-------IIQTQT-MKLYPAEFVVTLLYCL---FATIIS-APICFV---GESNLS---AWRLKPDIE 143 (239)
Q Consensus 82 ~~l~s~~~~a~~~-------v~~k~~-~~~~~~~~~~~~~~~~---~~~i~~-~~~~~~---~~~~~~---~~~~~~~~~ 143 (239)
+++++.+.++.|+ ...+.. ..+. ++.....-+.. .+++.. +.++.. ..++.. +.. .+...
T Consensus 178 ialisgi~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~-~~~~~ 255 (345)
T PRK13499 178 LAVMSGIFSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS-LAKPL 255 (345)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc-ccchh
Confidence 9999999999999 444321 1223 34433333333 443322 222332 111111 111 01011
Q ss_pred HHH---H-HHHHHHHHHHHHHHHHHhhcccCceEEee---cc-chHHHHHHHHHHHHhcCccc------hhhHHHHHHHH
Q 026401 144 LAS---I-VYSAFFGLSFITVVHTFGLRMKGPVYTAI---FK-PLSIAIAAITSFIFLSEALH------LGSVIGGVITC 209 (239)
Q Consensus 144 ~~~---l-~~~gi~~~~~~~~l~~~a~~~~~~~~~s~---~~-~l~Pv~a~l~~~~~lgE~~~------~~~~~G~~li~ 209 (239)
++. + +..|+ .=.+++.+|..+-++.|...... +. .+..+++.+++. ++||.=+ ...++|.++++
T Consensus 256 ~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI 333 (345)
T PRK13499 256 LITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVII 333 (345)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHH
Confidence 111 1 22233 45677788888888887655544 44 677799999998 5999866 56788999999
Q ss_pred Hhhhhhhcc
Q 026401 210 VGFYTVLWG 218 (239)
Q Consensus 210 ~gi~~~~~~ 218 (239)
+|..+....
T Consensus 334 ~g~~lig~~ 342 (345)
T PRK13499 334 LAANIVGLG 342 (345)
T ss_pred HHHHHHhhc
Confidence 999887654
No 67
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0027 Score=48.81 Aligned_cols=137 Identities=9% Similarity=0.103 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
+..++.+.+..+..+...+..|+.+...+|..-....+..|++.+..+.++.+..+ ++.......|| ...-|++ ..+
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW-~~~GG~l-Ga~ 81 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWW-AWIGGLL-GAI 81 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchH-HHHccch-hhh
Confidence 56678889999999999999999888877999999999999999998888744322 22211111232 2222332 223
Q ss_pred HHHHHHHhhcccCce-EEeeccchHHHHHHHHHHHHhc----CccchhhHHHHHHHHHhhhhhhc
Q 026401 158 ITVVHTFGLRMKGPV-YTAIFKPLSIAIAAITSFIFLS----EALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~-~~s~~~~l~Pv~a~l~~~~~lg----E~~~~~~~~G~~li~~gi~~~~~ 217 (239)
--..-.....+.|++ .+.....-|-+.+.+.+.+=+. .+++...++|+.++++|+++..+
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 233344556676664 4555666677777887776444 56899999999999999655543
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.34 E-value=0.0036 Score=52.91 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCceEEeecc-chHHHHHHHHHHHHhcCccchhhH----HHHHHHHHhhhhhhc
Q 026401 143 ELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFK-PLSIAIAAITSFIFLSEALHLGSV----IGGVITCVGFYTVLW 217 (239)
Q Consensus 143 ~~~~l~~~gi~~~~~~~~l~~~a~~~~~~~~~s~~~-~l~Pv~a~l~~~~~lgE~~~~~~~----~G~~li~~gi~~~~~ 217 (239)
.++.-+..|+ .=.+++...+++.++.|.+++.++. -++-+.+.+++.+++||--+..++ ++.+++++|+++..+
T Consensus 44 ~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 44 SFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 4555556666 4569999999999999999999887 677788999999999998776554 377888899998887
Q ss_pred ccccccc
Q 026401 218 GKANDEA 224 (239)
Q Consensus 218 ~~~~~~~ 224 (239)
+++++++
T Consensus 123 ~~~~~~~ 129 (269)
T PF06800_consen 123 QDKKSDK 129 (269)
T ss_pred ccccccc
Confidence 6666554
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.34 E-value=0.0016 Score=57.13 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHH-----HHhccCCC-cccccCCchhHHHHH
Q 026401 75 RWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPI-----CFVGESNL-SAWRLKPDIELASIV 148 (239)
Q Consensus 75 ~~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~-~~~~~~~~~~~~~l~ 148 (239)
+...|.++.++++++|+.+.+-.|+ .++.+ +... |. .+.++..+. +.+..++. +..+..+...+..-+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence 3458999999999999999999988 55552 2222 22 222221111 11212221 122222233444444
Q ss_pred HHHHHHHHHHHHHHHHhhcccCceEEeec-cchHHHHHHHHHHHHhcCcc-------chhhHHHHHHHHHhhhhhhc
Q 026401 149 YSAFFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEAL-------HLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 149 ~~gi~~~~~~~~l~~~a~~~~~~~~~s~~-~~l~Pv~a~l~~~~~lgE~~-------~~~~~~G~~li~~gi~~~~~ 217 (239)
..|+ .=.++...+..++|+.|.+....+ .-++-+.+.+++.+++||-. ....++|.+++++|+++..+
T Consensus 78 l~G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 78 LFGA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5555 356899999999999999877655 45788899999999998754 23466799999999999887
No 70
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.34 E-value=0.00059 Score=49.53 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhcccCceEE-eeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 152 FFGLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 152 i~~~~~~~~l~~~a~~~~~~~~~-s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
+.+-..+|++...++|+.+...+ ++..-+--+.+.+.+++++||++++.+++|+++++.|+....
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 33557888888888888877554 444456778889999999999999999999999999998764
No 71
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.34 E-value=0.00082 Score=47.73 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcccCceEE-eeccchHHHHHHHHHHHHhcCccchhhHHHHHHH
Q 026401 154 GLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVIT 208 (239)
Q Consensus 154 ~~~~~~~l~~~a~~~~~~~~~-s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li 208 (239)
+-.++++++.+++|+.+.+.+ ++..-+..+...+.|.+++||++++.+++|+++|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 567889999999999998887 4455688899999999999999999999999886
No 72
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.00067 Score=58.07 Aligned_cols=198 Identities=18% Similarity=0.189 Sum_probs=109.2
Q ss_pred CcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCC-CCCCCCchHHHHH
Q 026401 3 GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWT-PQSTRSRWVIGGL 81 (239)
Q Consensus 3 ~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~l 81 (239)
..++-+..++++..++|||++.. ..+|..+|+.|..+++. +.|.-+...+ ...- .--.+..+. ...
T Consensus 97 GAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-haP~e~~i~t-----~~el~~~~~~~~Fl-iy~ 163 (335)
T KOG2922|consen 97 GALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HAPKEQEIES-----VEEVWELATEPGFL-VYV 163 (335)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ecCccccccc-----HHHHHHHhcCccHH-HHH
Confidence 35677889999999999999999 99999999999999994 4433221100 0000 000111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHH-----HH--HhccCCCcccccCCchhHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAP-----IC--FVGESNLSAWRLKPDIELASIVYSAFFG 154 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~--~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 154 (239)
...+..++.-++.+--|+. ..+.+++.....+.|.....- .+ ....+ ..+...+..|..++.... |
T Consensus 164 ~~iil~~~il~~~~~p~~g---~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g---~~ql~~~~ty~~~l~~~~-~ 236 (335)
T KOG2922|consen 164 IIIILIVLILIFFYAPRYG---QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG---NNQLFYPLTWIFLLVVAT-C 236 (335)
T ss_pred HHHHHHHHHHheeeccccc---ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC---CcccccHHHHHHHHHHHH-H
Confidence 1111111111111111111 112444444444443221110 00 01111 122223345666665555 6
Q ss_pred HHHHHHHHHHhhcccCceEEeeccchH-HHHHHHHHHHHhcCccc--h----hhHHHHHHHHHhhhhhhcccc
Q 026401 155 LSFITVVHTFGLRMKGPVYTAIFKPLS-IAIAAITSFIFLSEALH--L----GSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 155 ~~~~~~l~~~a~~~~~~~~~s~~~~l~-Pv~a~l~~~~~lgE~~~--~----~~~~G~~li~~gi~~~~~~~~ 220 (239)
...+..-.|+|++..+++.++.+.+.. -.++++-|.++++|--. . ....|...++.|+.+....|.
T Consensus 237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd 309 (335)
T KOG2922|consen 237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKD 309 (335)
T ss_pred HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecc
Confidence 778888999999999998888777654 44555667777776542 2 356799999999988754333
No 73
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00078 Score=48.68 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhcccCceEE-eeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 154 GLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 154 ~~~~~~~l~~~a~~~~~~~~~-s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
+-.++|.+...++|+++...+ ++..-+-.+.+.+.+++++||++++.+++|.++++.|+.....
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 446778888888888776443 4555666777889999999999999999999999999987654
No 74
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=96.89 E-value=0.00058 Score=50.11 Aligned_cols=40 Identities=30% Similarity=0.518 Sum_probs=37.4
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
+.++.|+++.+++++++||+++++ +++|+++.+.|+.+++
T Consensus 86 ~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 86 LQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 467899999999999999999999 9999999999998875
No 75
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.86 E-value=0.0009 Score=49.15 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 4 NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 4 ~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
++.|+++.+++++++|||++.+ |++|+++.++|++++.
T Consensus 71 ~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 71 SLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 4789999999999999999999 9999999999998875
No 76
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.83 E-value=0.003 Score=52.91 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccccc
Q 026401 155 LSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAND 222 (239)
Q Consensus 155 ~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~ 222 (239)
-.++-.+.+.++++.+|+...++..+..+++.+++++++|.+++..||.+..++++|+.++.......
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 45666788899999999999999999999999999999999999999999999999999987765554
No 77
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.62 E-value=0.008 Score=44.12 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 026401 86 SNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFG 165 (239)
Q Consensus 86 s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a 165 (239)
-++.|+..+.+.||..+... +..-.. +..-.... ++. .|+ . ...+.....+-..|++.
T Consensus 4 Vg~~WG~Tnpfik~g~~~~~-~~~~~~-~~~~~~~~-----Ll~-----n~~--------y--~ipf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 4 VGILWGCTNPFIKRGSSGLE-KVKASL-QLLQEIKF-----LLL-----NPK--------Y--IIPFLLNQSGSVLFFLL 61 (113)
T ss_pred ehHHhcCchHHHHHHHhhcC-CccchH-HHHHHHHH-----HHH-----hHH--------H--HHHHHHHHHHHHHHHHH
Confidence 35789999999999887763 222221 21111111 110 122 1 11222344566777888
Q ss_pred hcccCceEEeec-cchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhh
Q 026401 166 LRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTV 215 (239)
Q Consensus 166 ~~~~~~~~~s~~-~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~ 215 (239)
+.+.+-+.+.++ +.+.=+++++.++++.+|..+...++|+++++.|+.++
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 999999999998 49999999999988777778889999999999998764
No 78
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.0017 Score=53.75 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHH
Q 026401 79 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFI 158 (239)
Q Consensus 79 G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 158 (239)
..+++++-++.|+..-....+.-. +|..-+... .++++...+..++...+...++ .++.-+..|.+ =.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGt-T~GALifaiiv~~~~~p~~T~~-----~~iv~~isG~~-Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGT-TLGALIFAIIVFLFVSPELTLT-----IFIVGFISGAF-WSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhc-cHHHHHHHHHHheeecCccchh-----hHHHHHHhhhH-hhhh
Confidence 457888999999987766554322 233333333 3444444333333222111221 23333334443 3588
Q ss_pred HHHHHHhhcccCceEEeeccc-hHHHHHHHHHHHHhcCccchhhH----HHHHHHHHhhhhhhcccccccc
Q 026401 159 TVVHTFGLRMKGPVYTAIFKP-LSIAIAAITSFIFLSEALHLGSV----IGGVITCVGFYTVLWGKANDEA 224 (239)
Q Consensus 159 ~~l~~~a~~~~~~~~~s~~~~-l~Pv~a~l~~~~~lgE~~~~~~~----~G~~li~~gi~~~~~~~~~~~~ 224 (239)
+...+++++..|.+++.+++. .+-|-+.+++.+.+||-.+..++ +.++++++|+++..+++|.+++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 999999999999999988765 78888999999999999988765 3667788999888776654333
No 79
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.79 E-value=0.0062 Score=52.82 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=88.9
Q ss_pred HHHHHHHHhh--hcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 026401 93 WYIIQTQTMK--LYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKG 170 (239)
Q Consensus 93 ~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~~~~ 170 (239)
.++..|+..+ +.+-|..++......+.+..+..-.+...+.. +..+...+..++-+++ ...++..+-+.++++.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~-~~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGL-VFCISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHH-HHHHHHHhcchhhhccc
Confidence 3446777777 55668888888766666666555443222221 1112335667788888 45688999999999999
Q ss_pred ceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 171 PVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 171 ~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
.+..-..-.++|++++++++++.+|+.+...+.-+..++.|+.+..+
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 99999999999999999999999999988776666666666665544
No 80
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.64 E-value=0.45 Score=41.59 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC---chHHHHHHHHHHHHHHHHHHHHhcc-----CC---CcccccCCchhHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYP---AEFVVTLLYCLFATIISAPICFVGE-----SN---LSAWRLKPDIELAS 146 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~-----~~---~~~~~~~~~~~~~~ 146 (239)
.-.+.+++..+-++......|...++.. .|-+..+..=+.-.+++....+.-+ .. .+.+-...+.+...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 3445555556667777777666544431 2344444433444444444444321 11 11100001111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccc
Q 026401 147 IVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDE 223 (239)
Q Consensus 147 l~~~gi~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~ 223 (239)
+..=.+ .-.+.-.+++.+..+.+|++..+...+....+.+++.++++++++..||...++...|+.++.....+..
T Consensus 95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 111111 2345556888999999999999999999999999999999999999999999999999999985444433
No 81
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.57 E-value=0.068 Score=44.96 Aligned_cols=126 Identities=10% Similarity=0.079 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCC-cccccCCchhHHH-----HHHHHH
Q 026401 79 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNL-SAWRLKPDIELAS-----IVYSAF 152 (239)
Q Consensus 79 G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~-----l~~~gi 152 (239)
|.+.+++|+++++...+=.||.... |++.+..+++....+..+...+..+.+. ..|.......|.. +-..--
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 3467788899999888888876544 6888777777666666665555433211 1121111111100 001111
Q ss_pred HHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHH-HhcCcc-----chhhHHHHHHHHHhhhhhhccccc
Q 026401 153 FGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFI-FLSEAL-----HLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 153 ~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~-~lgE~~-----~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
++-++++.+|. ...-+.+-..+-+ ++|++. ++..++|++++++|..+...-|.+
T Consensus 79 iGLglg~liW~---------------s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 79 IGLGLGMLIWG---------------SVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hhhHHHHHHHH---------------HHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 12234444442 2233334333322 344332 567899999999998887654443
No 82
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.0071 Score=51.91 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=94.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHH
Q 026401 73 RSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAF 152 (239)
Q Consensus 73 ~~~~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 152 (239)
..++.+|.++++.|.++.+...++.|+..++.. . . ..-...+ ..... --..-|.|+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~--------------~~ra~~g--g~~yl----~~~~Ww~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---S--------------GLRAGEG--GYGYL----KEPLWWAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---h--------------cccccCC--Ccchh----hhHHHHHHH
Confidence 445678999999999999999999998776652 1 0 1000011 11110 113445666
Q ss_pred HHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 153 FGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 153 ~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
+..++|-...+.+....+++.++++..+..++..+++..+++|++++...+|+++.++|-.+...-.++
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~ 140 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK 140 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence 777788888888889999999999999999999999999999999999999999999998876554433
No 83
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.68 E-value=0.016 Score=46.51 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 157 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 157 ~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
.+-++|..++++++|+.++.+......+..+++++++|+++....++.+++-+.|+++..+...
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 4567888999999999999999999999999999999999999999999999999998876543
No 84
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.21 E-value=0.044 Score=48.11 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 156 SFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 156 ~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
..+.+.++.+++...++...++....-+|+..++..+.+|++++.+.++..+-+.|++++...+.+
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 578889999999999999999999999999999999999999999999999999999998876544
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.64 E-value=0.0067 Score=50.28 Aligned_cols=184 Identities=14% Similarity=0.090 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHHHH
Q 026401 7 PGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLIS 86 (239)
Q Consensus 7 P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~s 86 (239)
-+-+-+++.+.++|..+..+.-- -.+++++.+.|+.+-.. +.++ ++ ..++..+.-.|...++.|
T Consensus 97 LVg~sL~gV~~f~EW~t~~~~Il--G~iAliliviG~~lTs~-~~~~-----------nk--~~~~~~n~kkgi~~L~iS 160 (288)
T COG4975 97 LVGTSLFGVFVFHEWTTPTQIIL--GFIALILIVIGIYLTSK-QDRN-----------NK--EEENPSNLKKGIVILLIS 160 (288)
T ss_pred HhhceeeeEEEEeccCcchhHHH--HHHHHHHHHHhheEeee-eccc-----------cc--cccChHhhhhheeeeeee
Confidence 34456677788888876651000 12345555666655442 1100 00 112233455789999999
Q ss_pred HHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 026401 87 NLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGL 166 (239)
Q Consensus 87 ~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~ 166 (239)
.++|-.|.++.+...-+--+.+.....-+..+++. +..... +. . ..+..+.-+..|+ .=+++-..+..+.
T Consensus 161 t~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali---~~~~~~-~~--~---~~K~t~~nii~G~-~Wa~GNl~ml~a~ 230 (288)
T COG4975 161 TLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI---LGFFKM-EK--R---FNKYTWLNIIPGL-IWAIGNLFMLLAA 230 (288)
T ss_pred ccceeeeEeeeccccccchhhhhHHHHHHHHHHHH---Hhhccc-cc--c---hHHHHHHHHhhHH-HHHhhHHHHHHhh
Confidence 99999999988865421112333333344444433 232211 11 1 1122223333444 3456777788888
Q ss_pred cccCceEEeeccchHHHHHHHHHHHHhcCccchhh----HHHHHHHHHhhhhhh
Q 026401 167 RMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGS----VIGGVITCVGFYTVL 216 (239)
Q Consensus 167 ~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~----~~G~~li~~gi~~~~ 216 (239)
++.|..+.=-++.+-.+.+.+-+.++++|+=+..+ ++|.+++++|..+..
T Consensus 231 ~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 231 QKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred hhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 88888777777888889999999999999987754 468888888876654
No 86
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=92.92 E-value=0.089 Score=39.10 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 6 TPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 6 ~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
.-+.+.++++++++|++++. +++|+.+.++|++.+-
T Consensus 67 G~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 67 GILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 34567889999999999999 9999999999998876
No 87
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=92.79 E-value=0.096 Score=37.90 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 7 PGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 7 P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
-+.+.+.++++++|+++.. |++|+.+.++|++.+-
T Consensus 68 ~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 68 IVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 4567889999999999999 9999999999998865
No 88
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=92.73 E-value=0.092 Score=39.56 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=30.0
Q ss_pred chHHHHHHHHHH--hhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 5 LTPGFTFILAII--FRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 5 ~~P~~~~~la~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
..+.++.+.++. +++|+++.+ +++|+++.++|+.++.
T Consensus 83 l~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 83 LSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 344455555553 899999999 9999999999999977
No 89
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=92.64 E-value=0.11 Score=38.10 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 7 PGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 7 P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
-+.+.+++++++||++++. +++|+.+.++|++.+-
T Consensus 68 ~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 68 IVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3557889999999999999 9999999999999976
No 90
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=92.34 E-value=0.12 Score=37.79 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhh
Q 026401 7 PGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLV 46 (239)
Q Consensus 7 P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 46 (239)
-+.+.+++++++||++++. |++|+.+.+.|++.+
T Consensus 73 ~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 73 IAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 3567789999999999999 999999999999875
No 91
>PRK11431 multidrug efflux system protein; Provisional
Probab=92.08 E-value=0.13 Score=37.25 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 7 PGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 7 P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
-+.+.+++++++||++++. +++|+.+.+.|++.+-
T Consensus 67 ~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 67 AVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 4567889999999999999 9999999999998864
No 92
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.34 E-value=0.73 Score=38.28 Aligned_cols=134 Identities=10% Similarity=0.048 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-cC------c----hHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQTMKL-YP------A----EFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYS 150 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~~~~~-~~------~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (239)
++.+--+||-.|.+.+.|..+. +. + ...+.++++....+..=++..+....-.+.. ..+ ..+..
T Consensus 17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t----~~~-~YaAc 91 (337)
T KOG1580|consen 17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNT----PTK-MYAAC 91 (337)
T ss_pred EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCC----cch-HHHHH
Confidence 4444457888999998887653 21 0 2344455555555443322222111101111 122 22222
Q ss_pred HHHHHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 151 AFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 151 gi~~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
.. +-.++...-|.++|..+=-+.-+--+..|+=..+++.++.+..-+|..+.-..+|+.|+.+..++.+|
T Consensus 92 s~-sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 92 SA-SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred HH-HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 22 45667777788888887555556678888889999999999999999999999999999998886444
No 93
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=90.23 E-value=4 Score=35.26 Aligned_cols=126 Identities=14% Similarity=0.090 Sum_probs=84.6
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcc-cccCC-chhHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 026401 94 YIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSA-WRLKP-DIELASIVYSAFFGLSFITVVHTFGLRMKGP 171 (239)
Q Consensus 94 ~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~gi~~~~~~~~l~~~a~~~~~~ 171 (239)
+.+.|...++++=|..++.+++..-.......-...+..... ...-+ ....-.++-.++ ++++=-.+-|+++++.+.
T Consensus 32 tf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtl 110 (349)
T KOG1443|consen 32 TFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTL 110 (349)
T ss_pred HHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeee
Confidence 345566666665567777666554433332222221111111 10000 011223334555 778888899999999999
Q ss_pred eEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 172 VYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 172 ~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
+.-.+.-+..++|..++|.++-=|++++....=..+|-+|+++..++..
T Consensus 111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 9999999999999999999888899999999999999999998877644
No 94
>PRK02237 hypothetical protein; Provisional
Probab=90.11 E-value=0.48 Score=34.25 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 178 KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 178 ~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
.-...+.++++.+.+-|++++.+.++|..+.++|+.+..+..|
T Consensus 66 GGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 66 GGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred hhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 3344567889999999999999999999999999988766544
No 95
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=89.56 E-value=0.43 Score=34.41 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 180 LSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 180 l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
...+.+.++++.+-|++|+.+.++|..+.++|+.+..+..|
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 34567889999999999999999999999999998877554
No 96
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=87.85 E-value=3 Score=36.55 Aligned_cols=140 Identities=13% Similarity=0.140 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHH--HhccCCC-cccccCCchhHHHHHHHH
Q 026401 75 RWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPIC--FVGESNL-SAWRLKPDIELASIVYSA 151 (239)
Q Consensus 75 ~~~~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-~~~~~~~~~~~~~l~~~g 151 (239)
...+|.++..+++++-+.+.+=.||. |+.+ =..+=..+.+++- ...|.. ++..++. +-....+...+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~sw-li~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSW-LIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHH-HHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 35689999999999999999888875 5653 2333333333332 223332 2322222 112222223444444444
Q ss_pred HHHHHHHHHHHHHhhcccCceEE-eeccchHHHHHHHHHHHHhcC-------ccchhhHHHHHHHHHhhhhhhcc
Q 026401 152 FFGLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSE-------ALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 152 i~~~~~~~~l~~~a~~~~~~~~~-s~~~~l~Pv~a~l~~~~~lgE-------~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
++ =+++-..|=.++|+.|.+.. ++..-+.-+++.++--++.|+ +-....++|.++.++|+.++-+.
T Consensus 81 ~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 81 VL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 42 34555666678888886543 333334444455544344332 22346778999999999998764
No 97
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=87.14 E-value=0.8 Score=32.96 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 186 AITSFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 186 ~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
+.++.+++||++++....|.++++.+++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 4567789999999999999999999887653
No 98
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.92 E-value=1.6 Score=31.00 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 184 IAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 184 ~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
+-+.+|.+.++|++.+..+.|..++..|+++..+
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 3355788999999999999999999999988754
No 99
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=14 Score=32.02 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhcCchHHHHH--HHHHHHHHHHHHHHHhcc--CCCcccccCCchhH--HHHHHHHHHHHHHHHHHHHHhh
Q 026401 93 WYIIQTQTMKLYPAEFVVTL--LYCLFATIISAPICFVGE--SNLSAWRLKPDIEL--ASIVYSAFFGLSFITVVHTFGL 166 (239)
Q Consensus 93 ~~v~~k~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~--~~l~~~gi~~~~~~~~l~~~a~ 166 (239)
-.+..|....+++-|..+.. +|++.+.+.+...-.... .++.++.. ...| ..+++.+-+-++ .+++
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~~i~t~------~~sl 98 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVGMLFTG------SKSL 98 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHHHHHHc------cccc
Confidence 34456666666654455544 899988887776654321 12222322 1222 234444332221 2578
Q ss_pred cccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 167 RMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 167 ~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
|+.+.....++-...|+...+...+++|.+++...+.....+.+|......
T Consensus 99 k~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 99 KYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred cccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999988876543
No 100
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=84.58 E-value=2.4 Score=30.64 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=43.5
Q ss_pred HHHHHHhhcccCceEEeecc-chHHHHHHHHHHHHhcCc-cchhhHHHHHHHHHhhhhhh
Q 026401 159 TVVHTFGLRMKGPVYTAIFK-PLSIAIAAITSFIFLSEA-LHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 159 ~~l~~~a~~~~~~~~~s~~~-~l~Pv~a~l~~~~~lgE~-~~~~~~~G~~li~~gi~~~~ 216 (239)
-.+|+..+++.+-+.+..+. .+.-.++.+.+.. +||. ..-..++|..++++|+.++.
T Consensus 66 Saly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhhee
Confidence 35677778898888777665 5577888999986 5555 55567789999999998764
No 101
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=83.28 E-value=0.71 Score=33.91 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=32.6
Q ss_pred CcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhh
Q 026401 3 GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLV 46 (239)
Q Consensus 3 ~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 46 (239)
++++=++|++.++++.+|..+++ +++|+.+.+.|+.+.
T Consensus 75 Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 75 NSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 35667889999988888888999 999999999998764
No 102
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=83.02 E-value=25 Score=30.46 Aligned_cols=128 Identities=10% Similarity=0.058 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhh--------cCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHH
Q 026401 89 LISVWYIIQTQTMKL--------YPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITV 160 (239)
Q Consensus 89 ~~a~~~v~~k~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 160 (239)
.+-.+.+++.++.++ ..++..+.+.+.+.+.+......-. .... ......|+...+.++ ...++-.
T Consensus 25 t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~--~k~~---~~~~apl~~y~~is~-tn~~s~~ 98 (327)
T KOG1581|consen 25 TFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKW--WKKE---LSGVAPLYKYSLISF-TNTLSSW 98 (327)
T ss_pred HHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhc--cccc---CCCCCchhHHhHHHH-HhhcchH
Confidence 344555666655422 2356777777777776665332221 1111 112224556666666 5567888
Q ss_pred HHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccccc
Q 026401 161 VHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAND 222 (239)
Q Consensus 161 l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~ 222 (239)
+-+.++|+.+=-+-.+--..--+-..+++.++++.+.+...++-+.+|-.|+.+....+.++
T Consensus 99 ~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 99 CGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 88899999854333344444555567899999999999999999999999999887765554
No 103
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=81.73 E-value=1.2 Score=37.94 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcc
Q 026401 154 GLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 154 ~~~~~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~ 218 (239)
|-..+-.+.+.++..+.++..-++--...+|..+++.-+++.+++..+|+|+..+..|++++-..
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 34445556666666666666666666678999999999999999999999999999999987543
No 104
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=81.20 E-value=1.3 Score=31.20 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHhhhcceeecccccchhhhhHHh
Q 026401 5 LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLV 38 (239)
Q Consensus 5 ~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l 38 (239)
+..+.+.+++.++++|+++.+ |+.|+.+
T Consensus 65 ~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 65 LGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 455678899999999999999 9998865
No 105
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=77.91 E-value=26 Score=30.85 Aligned_cols=177 Identities=12% Similarity=0.076 Sum_probs=97.1
Q ss_pred chhhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH------hhh
Q 026401 30 WAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQT------MKL 103 (239)
Q Consensus 30 ~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~s~~~~a~~~v~~k~~------~~~ 103 (239)
....+|++++++|+.+.-. .|..-.. + .+.+..+++.-.|.++++.|.+.-|..+.-...- ..+
T Consensus 135 ~~vL~Gv~v~LiGIai~g~-AG~~Ke~-------~--~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a 204 (344)
T PF06379_consen 135 QIVLLGVAVCLIGIAICGK-AGSMKEK-------E--LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVA 204 (344)
T ss_pred hhhhhHHHHHHHHHHHHhH-HHHhhhh-------h--hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3489999999999999773 2211110 0 0111234556689999999998877776633211 111
Q ss_pred cC-chHH----HHHHHHHHHHHHHHHHHHhcc---CCCc---ccccCCc---hhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 026401 104 YP-AEFV----VTLLYCLFATIISAPICFVGE---SNLS---AWRLKPD---IELASIVYSAFFGLSFITVVHTFGLRMK 169 (239)
Q Consensus 104 ~~-~~~~----~~~~~~~~~~i~~~~~~~~~~---~~~~---~~~~~~~---~~~~~l~~~gi~~~~~~~~l~~~a~~~~ 169 (239)
.. +|.. .....+.-+.+..+.+++... .+.+ ++....+ ......+..|+ .=..++.+|-++-.+.
T Consensus 205 ~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~l 283 (344)
T PF06379_consen 205 AGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKL 283 (344)
T ss_pred cCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 00 1211 222333445556666665421 1211 1111111 11222222333 3356777888888888
Q ss_pred Cce----EEeeccchHHHHHHHHHHHHhcCc------cchhhHHHHHHHHHhhhhhhcc
Q 026401 170 GPV----YTAIFKPLSIAIAAITSFIFLSEA------LHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 170 ~~~----~~s~~~~l~Pv~a~l~~~~~lgE~------~~~~~~~G~~li~~gi~~~~~~ 218 (239)
++. --.+.+.+..+++-+++. .++|- .-...++|+++++.++.++-+.
T Consensus 284 g~~~~~~sW~i~ma~~vl~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 284 GASGPFSSWAIHMALIVLFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 754 233556677888888885 57763 2234567999988888776543
No 106
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.29 E-value=6.6 Score=33.53 Aligned_cols=111 Identities=11% Similarity=0.182 Sum_probs=76.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCC----chhHHHHHHHHHHHHHHHHHHHHHhhcccCceEEeeccch
Q 026401 105 PAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKP----DIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPL 180 (239)
Q Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~~~~~~~~l~~~a~~~~~~~~~s~~~~l 180 (239)
+.|..++.++++....+...+.......+..+..++ ...-.-++=+.+ .-......-+..+++.|.+.--+--.+
T Consensus 59 d~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv-Vfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 59 DAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV-VFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh-eeeeehhccceehhhcceEEEEeccch
Confidence 368899999999988888777654322111111111 011111111111 122344456778899999999999999
Q ss_pred HHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 181 SIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 181 ~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
.-+|++++++++++++-+..-..++.+|+.|..+-.
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 999999999999999999999999999999876643
No 107
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=75.59 E-value=67 Score=30.08 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=18.8
Q ss_pred eccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhh
Q 026401 176 IFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYT 214 (239)
Q Consensus 176 ~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~ 214 (239)
...-..|+-+.++|.+.-.-.++....++++.++++..+
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 334456777777776543333333333333333333333
No 108
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=75.34 E-value=6.3 Score=28.33 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=37.7
Q ss_pred eccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 176 IFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 176 ~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
.+.-+..+.+.++.+++-|.+++.+.++|.++.++|+.++....|
T Consensus 63 AYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 63 AYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 345556778889999999999999999999999999888776654
No 109
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=74.49 E-value=53 Score=27.88 Aligned_cols=103 Identities=13% Similarity=0.007 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHH
Q 026401 79 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFI 158 (239)
Q Consensus 79 G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 158 (239)
..+..++++++.-...-+.|.+-...+ +.-.+.+...+++++++.+. .+....+ +..+|..++..|+ +.+.-
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~---RPwr~r~---~~~~~~~~~~yGv-sLg~M 84 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALF---RPWRRRL---SKPQRLALLAYGV-SLGGM 84 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHh---hHHHhcc---ChhhhHHHHHHHH-HHHHH
Confidence 567888888888888889999988886 88899999888888766443 1111111 2346777777777 55566
Q ss_pred HHHHHHhhcccCceEEeeccchHHHHHHHHH
Q 026401 159 TVVHTFGLRMKGPVYTAIFKPLSIAIAAITS 189 (239)
Q Consensus 159 ~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~ 189 (239)
..++|.++++++-..+-.+.++-|..-.+++
T Consensus 85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 85 NLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 6788899999999999999999997655443
No 110
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=74.31 E-value=0.31 Score=40.89 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhh-cCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 026401 91 SVWYIIQTQTMKL-YPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMK 169 (239)
Q Consensus 91 a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~l~~~a~~~~ 169 (239)
......+..+.++ .+.|..-++.....-+++.-+...+-. +. . ..-|-..+.+++ .-.=+-++..+|.|+.
T Consensus 31 t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~--~----~~~~~hYilla~-~DVEaNy~vV~AyQyT 102 (336)
T KOG2766|consen 31 TSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR-KY--I----KAKWRHYILLAF-VDVEANYFVVKAYQYT 102 (336)
T ss_pred HcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh-HH--H----HHHHHHhhheeE-EeecccEEEeeehhhc
Confidence 3333344444444 334566666555555555555554421 11 0 012333444444 3345556677889999
Q ss_pred CceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccc
Q 026401 170 GPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 170 ~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
.-+.+.++..-..+...+++|++++.+-.+.++.|.++.++|+.++....
T Consensus 103 smtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 103 SMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 99999999999999999999999999999999999999999999876543
No 111
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=64.98 E-value=89 Score=28.58 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
.|.++..+.-+++-+.-++.| .+. ||+.+....+..+...++.+++ .|+-. + .+..++....++..+
T Consensus 300 YgiLFI~LTF~~fflfE~~~~---~~i-HpiQY~LVGlAl~lFYlLLLSl-SEhi~--F------~~AYliAa~a~i~Li 366 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSK---LRI-HPIQYLLVGLALVLFYLLLLSL-SEHIG--F------NLAYLIAALACIGLI 366 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---Ccc-cHHHHHHHHHHHHHHHHHHHHH-Hhhhc--h------HHHHHHHHHHHHHHH
Confidence 466666666666666665655 355 5888877766666666666664 23211 1 222333333333444
Q ss_pred HHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHH--Hhhhhhh
Q 026401 158 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITC--VGFYTVL 216 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~--~gi~~~~ 216 (239)
+++. .++-+-.-.-..+...+.-+.+.+...+ .-|.-.+ .+|..+.+ .+++++.
T Consensus 367 ~~Y~--~~vl~~~k~~~~~~~~L~~LY~~Ly~lL-q~EdyAL--L~GSl~LF~iLa~vM~~ 422 (430)
T PF06123_consen 367 SLYL--SSVLKSWKRGLIFAGLLAALYGFLYVLL-QSEDYAL--LMGSLLLFIILALVMYL 422 (430)
T ss_pred HHHH--HHHHhcchHHHHHHHHHHHHHHHHHHHH-HhhhHHH--HHHHHHHHHHHHHHHhe
Confidence 4433 3333333333344556667777777754 4555444 34444444 4444444
No 112
>PRK02237 hypothetical protein; Provisional
Probab=62.06 E-value=7.8 Score=28.09 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhh
Q 026401 11 FILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVL 48 (239)
Q Consensus 11 ~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 48 (239)
.+-.|..-++|+++. .++|..+|++|+.++.+
T Consensus 74 l~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 74 LLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 344556667888888 99999999999999873
No 113
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=60.18 E-value=7.2 Score=28.19 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhh
Q 026401 9 FTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVL 48 (239)
Q Consensus 9 ~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 48 (239)
.+.+-.|..-|+|+++. .++|..+|++|+.++.+
T Consensus 70 ~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 70 ASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 34445566678888888 99999999999999884
No 114
>PRK11715 inner membrane protein; Provisional
Probab=54.81 E-value=1.5e+02 Score=27.19 Aligned_cols=124 Identities=9% Similarity=-0.031 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
.|.++..+.-+++-+.-++.| .+. +|+.+....+..+...++.+++ .|+- .+ .+..++....++..+
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~---~~i-HpiQYlLVGlAl~lFYLLLLSl-SEHi--gF------~~AYliAa~a~v~li 372 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK---LRI-HPVQYLLVGLALVLFYLLLLSL-SEHI--GF------TLAYLIAALACVLLI 372 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---cee-cHHHHHHHHHHHHHHHHHHHHH-Hhhh--ch------HHHHHHHHHHHHHHH
Confidence 466666666665555555555 355 5888877777666666666664 2321 11 222334333434455
Q ss_pred HHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 158 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
++++....-++ -.-......+.-..+++.+.+ --|.-.+..--...+++.+++++..
T Consensus 373 ~~Y~~~vl~~~--k~g~~~~~~L~~LYg~Ly~lL-q~EDyALL~GSllLF~~La~vM~~T 429 (436)
T PRK11715 373 GFYLSAVLRSW--KRGLLFAAALAALYGVLYGLL-QSEDYALLLGSLLLFAVLALVMFLT 429 (436)
T ss_pred HHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhee
Confidence 55443322222 222233445666777777754 4555544433333333444444443
No 115
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=54.45 E-value=54 Score=29.98 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=25.3
Q ss_pred ccchHHHHHHHHHHH-HhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 177 FKPLSIAIAAITSFI-FLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 177 ~~~l~Pv~a~l~~~~-~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
.....|+++.++..+ .+.... .....|.+++..|+.++.+.+++
T Consensus 394 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 394 KALIVGVIACVYSIWLLYAAGL-KYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666655443 333322 34556888888998776654443
No 116
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=51.84 E-value=96 Score=24.99 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccC--ceEEeeccchHHHH
Q 026401 143 ELASIVYSAFFGLSFITVVHTFGLRMKG--PVYTAIFKPLSIAI 184 (239)
Q Consensus 143 ~~~~l~~~gi~~~~~~~~l~~~a~~~~~--~~~~s~~~~l~Pv~ 184 (239)
..+.++..|++++..-|.+|++..++.+ ..+.+..-++....
T Consensus 126 GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~ 169 (226)
T COG4858 126 GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAV 169 (226)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHH
Confidence 3455666666565555566666666655 44444444443333
No 117
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=50.57 E-value=1.3e+02 Score=25.95 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=38.9
Q ss_pred hhhhHHhhhhhhhhhhhhcCCccccCCCCCCccCCCCCCCCCCchHHHHHHHHHHHHHHHH-------HHHHHHH-Hhhh
Q 026401 32 KIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISV-------WYIIQTQ-TMKL 103 (239)
Q Consensus 32 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~s~~~~a~-------~~v~~k~-~~~~ 103 (239)
.+.+.+++..|+..+.. .-+. ..+.....+..+...+.+.|.. ..+..++ ..++
T Consensus 6 ~~f~~~mGtg~l~~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~e 67 (330)
T PF03595_consen 6 AWFGMVMGTGGLSNLLY-LLPY-----------------HFGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAE 67 (330)
T ss_dssp GGGHHHHHHHHHHHHHH-TTTT-----------------TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHH-----------------hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 58999999999998872 1111 1222334666666666666655 2222322 2233
Q ss_pred cCchHHHHHHHHHHHHHHHH
Q 026401 104 YPAEFVVTLLYCLFATIISA 123 (239)
Q Consensus 104 ~~~~~~~~~~~~~~~~i~~~ 123 (239)
..||....++....-+...+
T Consensus 68 l~~p~~~~f~~t~~m~~~~l 87 (330)
T PF03595_consen 68 LRHPVRSSFFPTFPMALMLL 87 (330)
T ss_dssp HHSTTGGGGGGHHHHHHHHH
T ss_pred hcCCcccchHHHHHHHHHHH
Confidence 33455555554444444333
No 118
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=50.07 E-value=11 Score=27.21 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=21.8
Q ss_pred HHHHHHhhhcceeecccccchhhhhHHhhhhhhhh
Q 026401 11 FILAIIFRMENLALSSLSTWAKIIGTLVSVSGAML 45 (239)
Q Consensus 11 ~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 45 (239)
+.++.+++||++++. ...|.++-+.++.+
T Consensus 77 ~~Fsv~~l~E~l~~n------~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWN------YLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHH------HHHHHHHHHHhhhe
Confidence 456788999999999 77777666555543
No 119
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=47.23 E-value=26 Score=19.19 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=9.0
Q ss_pred cchhhHHHHHHHHHhhh
Q 026401 197 LHLGSVIGGVITCVGFY 213 (239)
Q Consensus 197 ~~~~~~~G~~li~~gi~ 213 (239)
-+...++|..++..+.+
T Consensus 10 ~~~~~~~G~~l~~~~~~ 26 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGL 26 (34)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34556667744444433
No 120
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=46.48 E-value=1.8e+02 Score=24.56 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=19.0
Q ss_pred cchhhhhHHhhhhhhhhhhhhcCCc
Q 026401 29 TWAKIIGTLVSVSGAMLVVLYKGPT 53 (239)
Q Consensus 29 ~~~~~~g~~l~~~Gv~ll~~~~~~~ 53 (239)
.+..++|++++++|..+..+.+.+.
T Consensus 115 ~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 115 PWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHHHHHHHHHHHHHHHheeeecCCC
Confidence 3458999999999999887655443
No 121
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=45.78 E-value=59 Score=30.00 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=18.5
Q ss_pred cchhhHHHHHHHHHhhhhhhcc
Q 026401 197 LHLGSVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 197 ~~~~~~~G~~li~~gi~~~~~~ 218 (239)
++..|++.+.++++|+++..+.
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~ 275 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILA 275 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999998877653
No 122
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=45.28 E-value=2.1e+02 Score=25.06 Aligned_cols=11 Identities=0% Similarity=-0.182 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 026401 154 GLSFITVVHTF 164 (239)
Q Consensus 154 ~~~~~~~l~~~ 164 (239)
...+++.+...
T Consensus 72 ~~~~~~~~~~~ 82 (385)
T PF03547_consen 72 IFILGLLLGFL 82 (385)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 123
>PRK11469 hypothetical protein; Provisional
Probab=44.02 E-value=13 Score=29.83 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=25.9
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhHHHHHHH-HHhhhhhh
Q 026401 177 FKPLSIAIAAITSFIFLSEALHLGSVIGGVIT-CVGFYTVL 216 (239)
Q Consensus 177 ~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li-~~gi~~~~ 216 (239)
++.+.|..+...+..+-+-.....+|+|..+. ..|..+..
T Consensus 46 ~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 46 VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677787777777655544445567766554 57888765
No 124
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=43.62 E-value=13 Score=32.24 Aligned_cols=62 Identities=6% Similarity=0.036 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhcccCceEEeecc-chHHHHHHHHHHHHhcCccc--hhhHHHHHHHHHhhhhhh
Q 026401 154 GLSFITVVHTFGLRMKGPVYTAIFK-PLSIAIAAITSFIFLSEALH--LGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 154 ~~~~~~~l~~~a~~~~~~~~~s~~~-~l~Pv~a~l~~~~~lgE~~~--~~~~~G~~li~~gi~~~~ 216 (239)
.--++-.+..+++...|.+.+-++. .+.-|.++.+.|+ ++++.+ ...+.|++++++++++-.
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 4446666777777777665554443 3444556677764 566665 356679999988887743
No 125
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=42.98 E-value=2.3e+02 Score=24.81 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=10.7
Q ss_pred Cccchh--hHHHHHHHHHhhhhh
Q 026401 195 EALHLG--SVIGGVITCVGFYTV 215 (239)
Q Consensus 195 E~~~~~--~~~G~~li~~gi~~~ 215 (239)
|..++. ..++.++.+.++.+.
T Consensus 364 ~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 364 EAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHhChHHHHHHHHHHHHHHHHHH
Confidence 344443 445555555665554
No 126
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=42.46 E-value=6.9 Score=29.40 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=16.1
Q ss_pred eEEeeccchHHHHHHHHHHHHhcCcc
Q 026401 172 VYTAIFKPLSIAIAAITSFIFLSEAL 197 (239)
Q Consensus 172 ~~~s~~~~l~Pv~a~l~~~~~lgE~~ 197 (239)
.+.+.+.|+.|+++.+.+.+ ++..+
T Consensus 68 ~~aa~l~Y~lPll~li~g~~-l~~~~ 92 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAV-LGSYL 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34556677888888887765 44443
No 127
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=41.78 E-value=2.7e+02 Score=25.16 Aligned_cols=124 Identities=11% Similarity=0.040 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 157 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 157 (239)
.-..+.+++..+.+.+....+.. +.. +|+.+...........++.+++ .|+. .+ ++..++....++...
T Consensus 298 ~kYaIlfI~Ltf~afFifE~lt~-~~~-Hp~QY~LVGlsLv~FYLLLLaL-sEHi--GF------t~Ayl~aSla~a~l~ 366 (443)
T COG4452 298 TKYAILFIGLTFMAFFIFEVLTG-QRL-HPMQYLLVGLSLVMFYLLLLAL-SEHI--GF------TVAYLIASLAGALLN 366 (443)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcc-ccc-chHHHHHHHHHHHHHHHHHHHH-Hhhc--Cc------CHHHHHHHHHHHHHH
Confidence 34566777777778777665543 334 5777766655555454554553 2321 11 344444444434444
Q ss_pred HHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHH--hhhhhhc
Q 026401 158 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCV--GFYTVLW 217 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~--gi~~~~~ 217 (239)
++++. ++-+.-.--......+.-..+++++.+ -.|.-. ...|..++++ +.+++..
T Consensus 367 ~~YL~--avl~~~~~g~~f~~~L~~lygvm~glL-~~edyA--LL~Gs~llf~~LaavM~lT 423 (443)
T COG4452 367 GIYLQ--AVLRGWRNGLLFFLALLLLYGVMFGLL-NSEDYA--LLLGSLLLFVALAAVMFLT 423 (443)
T ss_pred HHHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHh-hhhHHH--HHHhhHHHHHHHHHHHhee
Confidence 44433 333332333344555666778888743 444443 3445555554 4444443
No 128
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=41.59 E-value=16 Score=29.74 Aligned_cols=44 Identities=16% Similarity=0.352 Sum_probs=26.2
Q ss_pred eEEeeccchHHHHHHHHHHHHhcCcc-c-hhhHHH-HHHHHHhhhhhh
Q 026401 172 VYTAIFKPLSIAIAAITSFIFLSEAL-H-LGSVIG-GVITCVGFYTVL 216 (239)
Q Consensus 172 ~~~s~~~~l~Pv~a~l~~~~~lgE~~-~-~~~~~G-~~li~~gi~~~~ 216 (239)
...+.+..+.|..+...+..+- +.+ . +.+++| ..++.+|+.+..
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~-~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLA-KFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3444455567777777776544 343 3 346665 455567888764
No 129
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=41.40 E-value=38 Score=29.08 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=56.1
Q ss_pred HHHHHHHhhcc-cCceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccccccccc
Q 026401 158 ITVVHTFGLRM-KGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEAG 225 (239)
Q Consensus 158 ~~~l~~~a~~~-~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~~~~~ 225 (239)
.-.+.|++++. ++.-.--++-.-.++....++|++.|.+-+..|+....++.+|++++...+.++-+.
T Consensus 77 vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 77 VNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34567777765 566667778888999999999999999999999999999999999988766655443
No 130
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=41.40 E-value=1.4e+02 Score=23.51 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcCchHHHHHHHHHHHHHHHHHH
Q 026401 75 RWVIGGLLLLISNLLISVWYIIQTQTM-----KLYPAEFVVTLLYCLFATIISAPI 125 (239)
Q Consensus 75 ~~~~G~l~~l~s~~~~a~~~v~~k~~~-----~~~~~~~~~~~~~~~~~~i~~~~~ 125 (239)
++.-.....+.+++++++..++..-.. .+.|.|+.-..+.++.++++.+.+
T Consensus 129 ~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaF 184 (193)
T COG4657 129 NFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAF 184 (193)
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHH
Confidence 344556667777777777666544333 334455555555555555554433
No 131
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=41.12 E-value=2.4e+02 Score=24.48 Aligned_cols=34 Identities=3% Similarity=-0.045 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhc
Q 026401 184 IAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 217 (239)
Q Consensus 184 ~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~ 217 (239)
...+.+++.-.-..+...++++++.++++.....
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454432222344444555555555555443
No 132
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=40.74 E-value=2.7e+02 Score=25.02 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-CceEEeeccchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccc
Q 026401 146 SIVYSAFFGLSFITVVHTFGLRMK-GPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 146 ~l~~~gi~~~~~~~~l~~~a~~~~-~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
.+.-.+.....+.|.+...+.-|. ++..-.......+..+.++..+.+... + +..++..+.+.++....+.+
T Consensus 353 ~l~~~~~~~~l~~y~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 425 (435)
T PRK10435 353 ELTGIAVLLTMLPYFYSCVDLIRFEGVNIRNFVSLICSVLGCVFCFIALMGA-S-SFELAGTFIVSLIILMFYAR 425 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555444433222 221112223455566666665554422 2 33344444444443444433
No 133
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.33 E-value=26 Score=25.03 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 11 FILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 11 ~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
..++.+++||++++. .+.+.++.+.|+.++.
T Consensus 84 v~Fsvfyl~epl~~~------~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWN------YLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHH------HHHHHHHHHHHHHHhc
Confidence 456789999999999 8888777777666543
No 134
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=39.99 E-value=3.8e+02 Score=26.50 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=26.8
Q ss_pred CCcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 2 IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 2 i~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
+..++|+-.+.++.....+|.+.. .+.+.+-.++|.+.+.
T Consensus 16 l~~l~PFg~af~~a~~~~~~~~~~------~~~~~~~~~~G~~t~~ 55 (764)
T TIGR02865 16 VSPMAPFGIAFLAAVLLAKKGGDK------AFFSALGVLLGAISIQ 55 (764)
T ss_pred hcCCCchHHHHHHHHHHhhcccch------HHHHHHHHHHHHHHhC
Confidence 356889999988888777665444 4555555666665443
No 135
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=39.67 E-value=8.7 Score=29.39 Aligned_cols=24 Identities=13% Similarity=0.103 Sum_probs=14.8
Q ss_pred cCceEEeeccchHHHHHHHHHHHH
Q 026401 169 KGPVYTAIFKPLSIAIAAITSFIF 192 (239)
Q Consensus 169 ~~~~~~s~~~~l~Pv~a~l~~~~~ 192 (239)
.+..+.+.+.|+.|.++.+.+.++
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677777777766553
No 136
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=39.22 E-value=25 Score=24.34 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=22.6
Q ss_pred ccchhhHHHHHHHHHhhhhhhccccccccc
Q 026401 196 ALHLGSVIGGVITCVGFYTVLWGKANDEAG 225 (239)
Q Consensus 196 ~~~~~~~~G~~li~~gi~~~~~~~~~~~~~ 225 (239)
.+++..++|.++++.|+.++..++.+.+-+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~ 33 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEVS 33 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcchh
Confidence 568889999999999998887655444333
No 137
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=37.57 E-value=7.8 Score=30.04 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=10.3
Q ss_pred EeeccchHHHHHHHHHHH
Q 026401 174 TAIFKPLSIAIAAITSFI 191 (239)
Q Consensus 174 ~s~~~~l~Pv~a~l~~~~ 191 (239)
.+.+.|+.|+++.+.+..
T Consensus 77 aa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 77 SALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556667666665543
No 138
>PF15102 TMEM154: TMEM154 protein family
Probab=34.70 E-value=41 Score=25.84 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=9.6
Q ss_pred HHHHHHHhhhhhhccccccc
Q 026401 204 GGVITCVGFYTVLWGKANDE 223 (239)
Q Consensus 204 G~~li~~gi~~~~~~~~~~~ 223 (239)
++.+++..++++.+.|||+.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHheeEEeeccc
Confidence 33444445555555444443
No 139
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=34.46 E-value=3.5e+02 Score=24.38 Aligned_cols=39 Identities=10% Similarity=-0.250 Sum_probs=19.3
Q ss_pred ccchHHHHHHHHHHHHhcCccchh-hHHHHHHHHHhhhhhh
Q 026401 177 FKPLSIAIAAITSFIFLSEALHLG-SVIGGVITCVGFYTVL 216 (239)
Q Consensus 177 ~~~l~Pv~a~l~~~~~lgE~~~~~-~~~G~~li~~gi~~~~ 216 (239)
.....|+.+++...++.-. .++. ...+...+..|..++.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~y~ 425 (445)
T PRK10644 386 AYLAVTLIAFVYCIWAVVG-SGAKEVMWSFVTLMVITAFYA 425 (445)
T ss_pred chhHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH
Confidence 4456777777776554421 2222 2234444455555543
No 140
>PF15345 TMEM51: Transmembrane protein 51
Probab=32.39 E-value=30 Score=28.62 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhhhhccccccc
Q 026401 203 IGGVITCVGFYTVLWGKANDE 223 (239)
Q Consensus 203 ~G~~li~~gi~~~~~~~~~~~ 223 (239)
.|++|.++++++.++.|||++
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 477888899999888776644
No 141
>COG1971 Predicted membrane protein [Function unknown]
Probab=32.22 E-value=39 Score=27.19 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=26.2
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhHHHHHHH-HHhhhhhh
Q 026401 177 FKPLSIAIAAITSFIFLSEALHLGSVIGGVIT-CVGFYTVL 216 (239)
Q Consensus 177 ~~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li-~~gi~~~~ 216 (239)
+..+.|+.+-..+.++-+-.-.+.+|+|.++. +.|+.+..
T Consensus 46 f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 46 FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888877655444456777765554 58887764
No 142
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=29.83 E-value=34 Score=24.69 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=21.6
Q ss_pred HhhhcceeecccccchhhhhHHhhhhhhhhhhh
Q 026401 16 IFRMENLALSSLSTWAKIIGTLVSVSGAMLVVL 48 (239)
Q Consensus 16 ~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 48 (239)
..-+.++.+. .++|..+|++|+.++++
T Consensus 78 ~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 78 VVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred HHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 3345667777 99999999999988874
No 143
>PRK15049 L-asparagine permease; Provisional
Probab=29.32 E-value=4.6e+02 Score=24.21 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=4.8
Q ss_pred cchHHHHHHHH
Q 026401 178 KPLSIAIAAIT 188 (239)
Q Consensus 178 ~~l~Pv~a~l~ 188 (239)
....+.+++++
T Consensus 422 ~p~~~~~~l~~ 432 (499)
T PRK15049 422 APFTSWLTLLF 432 (499)
T ss_pred ccHHHHHHHHH
Confidence 34444444433
No 144
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.74 E-value=1.5e+02 Score=25.17 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=29.3
Q ss_pred EEeeccchHHHHHHHHHHHHhcC-----ccchhhHHHHHHHHHhhhhhhccc
Q 026401 173 YTAIFKPLSIAIAAITSFIFLSE-----ALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 173 ~~s~~~~l~Pv~a~l~~~~~lgE-----~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
..+.+..+..+.=.+...+=-++ .+|..|+++..++++|+.+..+.+
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555431111 267889999999999988765433
No 145
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=28.11 E-value=35 Score=20.45 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=5.6
Q ss_pred chhhHHHHHHHHHh
Q 026401 198 HLGSVIGGVITCVG 211 (239)
Q Consensus 198 ~~~~~~G~~li~~g 211 (239)
+|..++=.++|+.|
T Consensus 3 ~wlt~iFsvvIil~ 16 (49)
T PF11044_consen 3 TWLTTIFSVVIILG 16 (49)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444433334333
No 146
>PRK10489 enterobactin exporter EntS; Provisional
Probab=27.85 E-value=4.2e+02 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=9.2
Q ss_pred hHHHHHHHHHhhhhhhc
Q 026401 201 SVIGGVITCVGFYTVLW 217 (239)
Q Consensus 201 ~~~G~~li~~gi~~~~~ 217 (239)
...|++..++++++...
T Consensus 382 ~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 382 SASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555666655444
No 147
>PRK11010 ampG muropeptide transporter; Validated
Probab=27.36 E-value=4.8e+02 Score=23.83 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=21.4
Q ss_pred cccCceEEeeccchHHHHHHHH----HHHHhcCccchhhHHHHHHHHHhhhhhh
Q 026401 167 RMKGPVYTAIFKPLSIAIAAIT----SFIFLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 167 ~~~~~~~~s~~~~l~Pv~a~l~----~~~~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
++.+.+..+..+...-+-..+. +++.-.-..+....+..++.+.|+....
T Consensus 347 ~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 347 KSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555443332222 3322111122233445555555655543
No 148
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=26.82 E-value=1.9e+02 Score=18.86 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=10.3
Q ss_pred cchHHHHHHHHHHHHhc
Q 026401 178 KPLSIAIAAITSFIFLS 194 (239)
Q Consensus 178 ~~l~Pv~a~l~~~~~lg 194 (239)
..+.|+.+.+....+++
T Consensus 3 ll~iP~l~~l~~~p~~n 19 (66)
T PF11755_consen 3 LLLIPFLALLWGPPFYN 19 (66)
T ss_pred hHHHHHHHHHHhHHHhc
Confidence 34667777777744443
No 149
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.76 E-value=52 Score=19.35 Aligned_cols=17 Identities=24% Similarity=0.669 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhhhcccc
Q 026401 204 GGVITCVGFYTVLWGKA 220 (239)
Q Consensus 204 G~~li~~gi~~~~~~~~ 220 (239)
|.++++.++.++.+.+|
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 44455555555554444
No 150
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.75 E-value=56 Score=19.77 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=10.0
Q ss_pred HHHHHHHhhhhhhccccc
Q 026401 204 GGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 204 G~~li~~gi~~~~~~~~~ 221 (239)
-..++++|++...+.+++
T Consensus 17 ~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHcccc
Confidence 344455677766664444
No 151
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=24.93 E-value=46 Score=30.82 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHhccCCCcccccCCchhHH-HHHHHHHHHHHH
Q 026401 79 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELA-SIVYSAFFGLSF 157 (239)
Q Consensus 79 G~l~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~gi~~~~~ 157 (239)
|.++...+++..=+|.-..|+...+. ++....-......++....+....+.+ ...-..|. .++..+.+. .+
T Consensus 362 GL~l~iasavsHDiY~~vik~~ase~-~~v~vaRi~~v~~~vva~~lgi~~~gn-----VaflVa~AF~lAaSa~fP-vi 434 (529)
T COG4147 362 GLLLVIASAVSHDLYAMVIKKGATEK-KEVRVARIAVVILGVVAILLGILPPGN-----VAFLVALAFALAASANFP-VI 434 (529)
T ss_pred hHHHHHHHHHHhHHHHHHhCCCCCcc-ceehhHHHHHHHHHHHHHHheecCCcc-----HHHHHHHHHHHHHHcccc-hh
Confidence 34444555555556666665544343 355555555444444433333221111 00000111 122222222 24
Q ss_pred HHHHHHHhhcccCceEEeeccchHHHHHHHHHHHHh------------cCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 158 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFL------------SEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 158 ~~~l~~~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~l------------gE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
-+.+|.+=..+.|+..........-+.-++.+-.+. +-+++....+|+-+=+.+.++++.-.+
T Consensus 435 vlglfWKr~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~~~~~~~~~~~~~~~~g~~sipv~F~~~~ivSllt~ 509 (529)
T COG4147 435 VLGLFWKRLNTAGAIAGMLLGLIVTLVLIILSPTIWVVILGHPGFGWAGFPYEGPGLFSIPVGFLGAWIVSLLTK 509 (529)
T ss_pred hHHHHHhhccHHhHHHHHHHHHHHHHHHHHhCccccccccCccccccccCCCCCcchhhhhHHHHHhHheeccCC
Confidence 445555555555555555555555554444444333 233445566777777777777665433
No 152
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=24.89 E-value=1.9e+02 Score=20.53 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhhhhhhcc
Q 026401 201 SVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 201 ~~~G~~li~~gi~~~~~~ 218 (239)
.++|+++++-+.+...|+
T Consensus 49 If~Gi~lMlPAav~ivWR 66 (96)
T PF07214_consen 49 IFVGIGLMLPAAVNIVWR 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777555554444
No 153
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=24.34 E-value=87 Score=21.03 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHhhhhhh
Q 026401 198 HLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 198 ~~~~~~G~~li~~gi~~~~ 216 (239)
...+++|..+++.|.+=+.
T Consensus 41 ~laeiiav~lVl~GgYRil 59 (80)
T PRK13727 41 FLAELIAAILVLFGAYRVL 59 (80)
T ss_pred HHHHHHHHHHHhhhHHHHH
Confidence 3457789999998887543
No 154
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.33 E-value=57 Score=24.28 Aligned_cols=19 Identities=5% Similarity=-0.132 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhhhccccc
Q 026401 203 IGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 203 ~G~~li~~gi~~~~~~~~~ 221 (239)
+|++.+++-++.+.++++|
T Consensus 75 aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4444444444444443333
No 155
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=24.02 E-value=2.2e+02 Score=19.34 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026401 82 LLLISNLLISVWYIIQTQ 99 (239)
Q Consensus 82 ~~l~s~~~~a~~~v~~k~ 99 (239)
+.+.|.++|.++....+.
T Consensus 25 LtvLs~~~w~iWw~~f~d 42 (77)
T PF12292_consen 25 LTVLSVLSWPIWWFFFRD 42 (77)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 566666777777666654
No 156
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=23.84 E-value=34 Score=25.53 Aligned_cols=16 Identities=6% Similarity=-0.020 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 026401 146 SIVYSAFFGLSFITVV 161 (239)
Q Consensus 146 ~l~~~gi~~~~~~~~l 161 (239)
.++..|+..+.++|.+
T Consensus 58 vili~GvvvT~vays~ 73 (129)
T PF15099_consen 58 VILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHhhHhheeeEee
Confidence 4556667677777755
No 157
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=23.43 E-value=2.2e+02 Score=18.44 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026401 77 VIGGLLLLISNLLISVWYIIQTQTMK 102 (239)
Q Consensus 77 ~~G~l~~l~s~~~~a~~~v~~k~~~~ 102 (239)
.++.++.+.+.+|+.+++....+..+
T Consensus 5 ~l~~~~~llg~~~l~i~~~~~syVd~ 30 (63)
T PF13127_consen 5 ILSLILLLLGVVCLFIFNIIGSYVDE 30 (63)
T ss_pred HHHHHHHHHHHHHHHHHhcccceECC
Confidence 46677777777777777776555443
No 158
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.28 E-value=59 Score=27.54 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=29.8
Q ss_pred EeeccchHHHHHHHHHHHHhcC-----ccchhhHHHHHHHHHhhhhhhccccc
Q 026401 174 TAIFKPLSIAIAAITSFIFLSE-----ALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 174 ~s~~~~l~Pv~a~l~~~~~lgE-----~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
...+.....+.=.+...+=-++ .++..|+++..+++.|+.+..+.+++
T Consensus 209 f~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~~~~ 261 (269)
T PRK00052 209 FGLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWAYRK 261 (269)
T ss_pred HHHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555331122 25889999999999999877655433
No 159
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=22.64 E-value=5.8e+02 Score=23.14 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=23.1
Q ss_pred hHHHHHHHHH-HHHhcCccchhhHHHHHHHHHhhhhhhccccc
Q 026401 180 LSIAIAAITS-FIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 221 (239)
Q Consensus 180 l~Pv~a~l~~-~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~~ 221 (239)
..+..+.++. +..+.-.. ....+|.+++..|+.++.+.+|+
T Consensus 392 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 392 LIGLVALLYAVWLIYAAGL-KYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444333 33333333 25667888889998888654443
No 160
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=22.56 E-value=65 Score=18.04 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhcceeec
Q 026401 8 GFTFILAIIFRMENLALS 25 (239)
Q Consensus 8 ~~~~~la~~~~~e~~~~~ 25 (239)
++-+++..++.|||+++.
T Consensus 14 iYgiiiT~L~~R~K~~~~ 31 (33)
T PF11628_consen 14 IYGIIITALYCREKFSKS 31 (33)
T ss_dssp HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 456778889999998765
No 161
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=21.79 E-value=1.7e+02 Score=16.74 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYIIQ 97 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v~~ 97 (239)
+-++.-++.+.+|++|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44567788899999999744
No 162
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.46 E-value=1.1e+02 Score=18.91 Aligned_cols=12 Identities=25% Similarity=0.080 Sum_probs=5.9
Q ss_pred HHhhhhhhcccc
Q 026401 209 CVGFYTVLWGKA 220 (239)
Q Consensus 209 ~~gi~~~~~~~~ 220 (239)
+.|+.++...|+
T Consensus 15 lLg~~I~~~~K~ 26 (50)
T PF12606_consen 15 LLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHhhc
Confidence 455555544443
No 163
>KOG4770 consensus NADH dehydrogenase subunit 1 [Energy production and conversion]
Probab=21.05 E-value=2.3e+02 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=23.2
Q ss_pred HhhcccCceEEeeccchHHHHHHHHHHHHhcCccch
Q 026401 164 FGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHL 199 (239)
Q Consensus 164 ~a~~~~~~~~~s~~~~l~Pv~a~l~~~~~lgE~~~~ 199 (239)
+.++|.||.+++.+..+||..-.+= ++.+|++++
T Consensus 33 ~iQ~RkGP~~vg~~GllQplaDg~K--L~~KE~l~P 66 (315)
T KOG4770|consen 33 YIQNRKGPNKVGPMGLLQPLADGVK--LLTKEQLTP 66 (315)
T ss_pred HHHhccCCcccccchhhHHHHHHHH--HHhcCCCCC
Confidence 4567788888888888877665443 456676654
No 164
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=20.70 E-value=2.1e+02 Score=24.42 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=18.7
Q ss_pred cchhhHHHHHHHHHhhhhhhccc
Q 026401 197 LHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 197 ~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
++..|++...+++.|+++..+.+
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~ 268 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAY 268 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988765533
No 165
>PRK10591 hypothetical protein; Provisional
Probab=20.66 E-value=2.9e+02 Score=19.46 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhhhhhcc
Q 026401 201 SVIGGVITCVGFYTVLWG 218 (239)
Q Consensus 201 ~~~G~~li~~gi~~~~~~ 218 (239)
.++|+++++-+.+...|+
T Consensus 49 if~Gi~lmiPAav~ivWR 66 (92)
T PRK10591 49 IFLGVLLMLPAAVVIIWR 66 (92)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 456777777665555554
Done!