Query 026401
Match_columns 239
No_of_seqs 138 out of 1470
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 12:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 6.2E-12 2.1E-16 94.8 4.7 72 149-220 34-106 (137)
2 3b5d_A Multidrug transporter E 98.8 6.1E-09 2.1E-13 75.5 6.3 71 149-219 34-105 (110)
3 3b5d_A Multidrug transporter E 96.6 0.001 3.4E-08 47.7 2.8 39 3-47 64-102 (110)
4 2i68_A Protein EMRE; transmemb 96.6 0.001 3.4E-08 49.7 2.8 40 3-48 64-103 (137)
5 4aps_A DI-OR tripeptide H+ sym 55.5 96 0.0033 26.4 10.9 14 203-216 457-470 (491)
6 3l1l_A Arginine/agmatine antip 46.8 45 0.0015 28.4 6.8 44 178-222 387-431 (445)
7 2zxe_G FXYD10, phospholemman-l 32.9 26 0.00091 22.5 2.2 19 201-219 24-42 (74)
8 1pw4_A Glycerol-3-phosphate tr 28.8 2.5E+02 0.0084 23.2 11.5 11 162-172 368-378 (451)
9 4aps_A DI-OR tripeptide H+ sym 23.2 3.3E+02 0.011 22.8 13.6 21 85-105 62-83 (491)
10 1w8x_P Protein P16, protein S, 18.5 1.9E+02 0.0066 19.0 4.3 45 195-239 2-47 (117)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.23 E-value=6.2e-12 Score=94.78 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCceEEeec-cchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhcccc
Q 026401 149 YSAFFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 220 (239)
Q Consensus 149 ~~gi~~~~~~~~l~~~a~~~~~~~~~s~~-~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~~ 220 (239)
.++++++.++|++|++++|+.+++++..+ ..+.|+++++++++++||++++.+++|+++|+.|+++....++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35666889999999999999999999998 8999999999999999999999999999999999999876543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.82 E-value=6.1e-09 Score=75.53 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCceEEeec-cchHHHHHHHHHHHHhcCccchhhHHHHHHHHHhhhhhhccc
Q 026401 149 YSAFFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 149 ~~gi~~~~~~~~l~~~a~~~~~~~~~s~~-~~l~Pv~a~l~~~~~lgE~~~~~~~~G~~li~~gi~~~~~~~ 219 (239)
..++++..++|.++.+++|+.+.+.+..+ ..+.|+++.+.+++++||++++.+++|+++|+.|++.....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35556788999999999999999999888 899999999999999999999999999999999999876543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.64 E-value=0.001 Score=47.73 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhh
Q 026401 3 GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 47 (239)
Q Consensus 3 ~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 47 (239)
.++.|+++++++++++||+++++ +++|+++.++|+.++.
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 46789999999999999999999 9999999999999887
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.63 E-value=0.001 Score=49.70 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHHhhhcceeecccccchhhhhHHhhhhhhhhhhh
Q 026401 3 GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVL 48 (239)
Q Consensus 3 ~~~~P~~~~~la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 48 (239)
.++.|++++++++++++|++++. +++|+++.++|++++..
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999 99999999999999874
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=55.54 E-value=96 Score=26.35 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhhhh
Q 026401 203 IGGVITCVGFYTVL 216 (239)
Q Consensus 203 ~G~~li~~gi~~~~ 216 (239)
.+...++.++....
T Consensus 457 ~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 457 FGLGSVVLGIVLVF 470 (491)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=46.80 E-value=45 Score=28.40 Aligned_cols=44 Identities=9% Similarity=-0.194 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHH-hcCccchhhHHHHHHHHHhhhhhhcccccc
Q 026401 178 KPLSIAIAAITSFIF-LSEALHLGSVIGGVITCVGFYTVLWGKAND 222 (239)
Q Consensus 178 ~~l~Pv~a~l~~~~~-lgE~~~~~~~~G~~li~~gi~~~~~~~~~~ 222 (239)
....++.+.+...+. +.... .....|.+.++.|+.++.+.++++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 387 YLAVTTIAFLYCIWAVVGSGA-KEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp THHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344555555544333 32222 244567788888887776544443
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=32.88 E-value=26 Score=22.50 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhhhhhhccc
Q 026401 201 SVIGGVITCVGFYTVLWGK 219 (239)
Q Consensus 201 ~~~G~~li~~gi~~~~~~~ 219 (239)
.++++++.+.|+.+...+|
T Consensus 24 LifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred chhHHHHHHHHHHHHHcCc
Confidence 4456777778888776554
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=28.78 E-value=2.5e+02 Score=23.17 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=5.5
Q ss_pred HHHhhcccCce
Q 026401 162 HTFGLRMKGPV 172 (239)
Q Consensus 162 ~~~a~~~~~~~ 172 (239)
+....+..++.
T Consensus 368 ~~~~~~~~~~~ 378 (451)
T 1pw4_A 368 GLHALELAPKK 378 (451)
T ss_dssp HHHHHHTSCTT
T ss_pred HHHHHHHhchh
Confidence 34455555543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=23.18 E-value=3.3e+02 Score=22.81 Aligned_cols=21 Identities=10% Similarity=-0.121 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhh-cC
Q 026401 85 ISNLLISVWYIIQTQTMKL-YP 105 (239)
Q Consensus 85 ~s~~~~a~~~v~~k~~~~~-~~ 105 (239)
...++..+......+..++ .+
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 62 IYASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3344455555566666666 54
No 10
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=18.50 E-value=1.9e+02 Score=19.00 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred CccchhhHHHHHHHHHhhhhhhccccccccccC-CcccCCCCCCCC
Q 026401 195 EALHLGSVIGGVITCVGFYTVLWGKANDEAGKN-KDSCKIPLLQSP 239 (239)
Q Consensus 195 E~~~~~~~~G~~li~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (239)
++-.+..|+|..++++=+++..+.+...+-... |.+....+-|++
T Consensus 2 dkkkllywvggglvliliwlwfrnrpaaqvasnwegppymtynqpq 47 (117)
T 1w8x_P 2 DKKKLLYWVGGGLVLILIWLWFRNRPAAQVASNWEGPPYMTYNQPQ 47 (117)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHTTCSCSSCTTCCCCTTCSSCCC
T ss_pred CcceeEeEecCchhhHHHHHHHccChHHHHhhcCCCCCcccccCCC
Done!