Query 026401
Match_columns 239
No_of_seqs 138 out of 1470
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 12:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026401.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026401hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 76.3 13 0.00098 29.0 11.1 24 149-172 352-375 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 31.8 62 0.0045 23.9 7.1 9 96-104 278-286 (417)
3 d1iwga8 f.35.1.1 (A:513-566,A: 26.0 1.1E+02 0.0078 21.9 8.3 28 183-210 95-122 (222)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 19.0 48 0.0035 15.2 3.1 18 78-95 3-20 (27)
5 d1pv7a_ f.38.1.2 (A:) Lactose 15.2 1.2E+02 0.0085 22.2 5.5 11 183-193 152-162 (417)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 10.6 3E+02 0.022 20.3 13.5 39 86-125 68-106 (447)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 10.4 58 0.0042 23.0 2.0 25 186-210 80-104 (199)
8 d1kqfb2 f.23.22.1 (B:246-290) 5.9 2.3E+02 0.016 14.9 2.6 25 192-216 7-31 (45)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 4.0 2.8E+02 0.02 13.6 2.7 20 75-94 16-35 (37)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 3.4 2.2E+02 0.016 17.0 1.5 32 203-234 26-57 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=76.26 E-value=13 Score=28.96 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCce
Q 026401 149 YSAFFGLSFITVVHTFGLRMKGPV 172 (239)
Q Consensus 149 ~~gi~~~~~~~~l~~~a~~~~~~~ 172 (239)
..|+.........+....+..+..
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKK 375 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHH
Confidence 334433333333444555555443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=31.77 E-value=62 Score=23.91 Aligned_cols=9 Identities=0% Similarity=-0.031 Sum_probs=3.7
Q ss_pred HHHHHhhhc
Q 026401 96 IQTQTMKLY 104 (239)
Q Consensus 96 ~~k~~~~~~ 104 (239)
...+..++.
T Consensus 278 ~~~~l~~r~ 286 (417)
T d1pv7a_ 278 FAPLIINRI 286 (417)
T ss_dssp THHHHHHHH
T ss_pred hhhhhhccc
Confidence 333444444
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=25.95 E-value=1.1e+02 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHH
Q 026401 183 AIAAITSFIFLSEALHLGSVIGGVITCV 210 (239)
Q Consensus 183 v~a~l~~~~~lgE~~~~~~~~G~~li~~ 210 (239)
+.+.+++..+.+.+++....+|.++.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3455667778899999998888877653
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.97 E-value=48 Score=15.22 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026401 78 IGGLLLLISNLLISVWYI 95 (239)
Q Consensus 78 ~G~l~~l~s~~~~a~~~v 95 (239)
+|.++.-++.++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 677888888888888753
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.16 E-value=1.2e+02 Score=22.18 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 026401 183 AIAAITSFIFL 193 (239)
Q Consensus 183 v~a~l~~~~~l 193 (239)
..+...+.++.
T Consensus 152 ~~~~~~~~~l~ 162 (417)
T d1pv7a_ 152 ALGASIVGIMF 162 (417)
T ss_dssp HHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 33333333333
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.64 E-value=3e+02 Score=20.26 Aligned_cols=39 Identities=8% Similarity=-0.100 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHH
Q 026401 86 SNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPI 125 (239)
Q Consensus 86 s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (239)
..+.+++......+..++++ +-.......+..++..+..
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~~~~~~ 106 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVMLFM 106 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhhc
Confidence 34445555666666666664 4444444444444443333
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.44 E-value=58 Score=22.98 Aligned_cols=25 Identities=8% Similarity=0.103 Sum_probs=15.7
Q ss_pred HHHHHHHhcCccchhhHHHHHHHHH
Q 026401 186 AITSFIFLSEALHLGSVIGGVITCV 210 (239)
Q Consensus 186 ~l~~~~~lgE~~~~~~~~G~~li~~ 210 (239)
.+....++|.+++.....+..+.+.
T Consensus 80 ~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 80 TFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp HHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCchHHHHHHHHHHHHH
Confidence 3334456778888777766666553
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.89 E-value=2.3e+02 Score=14.89 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=16.6
Q ss_pred HhcCccchhhHHHHHHHHHhhhhhh
Q 026401 192 FLSEALHLGSVIGGVITCVGFYTVL 216 (239)
Q Consensus 192 ~lgE~~~~~~~~G~~li~~gi~~~~ 216 (239)
+.+...-+...+|++....+.++..
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3455566677778877777776643
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.03 E-value=2.8e+02 Score=13.58 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 026401 75 RWVIGGLLLLISNLLISVWY 94 (239)
Q Consensus 75 ~~~~G~l~~l~s~~~~a~~~ 94 (239)
..-+|.++.++-++.++.|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34579888888888777664
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.44 E-value=2.2e+02 Score=16.96 Aligned_cols=32 Identities=16% Similarity=-0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhccccccccccCCcccCCC
Q 026401 203 IGGVITCVGFYTVLWGKANDEAGKNKDSCKIP 234 (239)
Q Consensus 203 ~G~~li~~gi~~~~~~~~~~~~~~~~~~~~~~ 234 (239)
....+++.|+.++..-|.|+++.+++...+..
T Consensus 26 ~iv~v~V~~~~~~~~~ryR~~~~~~~~~~~~~ 57 (91)
T d1fftb2 26 LIVVIPAILMAVGFAWKYRASNKDAKYSPNWS 57 (91)
T ss_dssp TTTTTHHHHHHHTTTTTTTTSTTTCSSCCCCC
T ss_pred HHHHHHHHHHHHhhheeeeccCCccCCCCccc
Done!