Query 026402
Match_columns 239
No_of_seqs 147 out of 1390
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03201 RAB geranylgeranyl tr 100.0 1E-59 2.3E-64 404.7 22.2 236 1-236 5-240 (316)
2 KOG0366 Protein geranylgeranyl 100.0 1.2E-59 2.6E-64 377.7 16.9 234 3-236 17-250 (329)
3 PLN02710 farnesyltranstransfer 100.0 1.3E-58 2.9E-63 406.9 23.0 233 2-235 42-278 (439)
4 cd02893 FTase Protein farnesyl 100.0 8.5E-56 1.8E-60 378.2 21.5 229 6-236 1-235 (299)
5 cd02894 GGTase-II Geranylgeran 100.0 1.8E-55 3.9E-60 375.2 21.9 232 4-235 1-235 (287)
6 cd02895 GGTase-I Geranylgerany 100.0 5.7E-53 1.2E-57 361.8 20.8 229 6-236 1-256 (307)
7 cd02895 GGTase-I Geranylgerany 100.0 9.2E-52 2E-56 354.4 22.7 233 3-235 48-304 (307)
8 COG5029 CAL1 Prenyltransferase 100.0 1.1E-52 2.3E-57 346.1 15.4 234 3-236 25-263 (342)
9 cd02894 GGTase-II Geranylgeran 100.0 1.2E-51 2.6E-56 351.6 22.4 233 3-235 48-284 (287)
10 cd02890 PTase Protein prenyltr 100.0 1.1E-51 2.3E-56 352.2 21.5 230 6-236 1-235 (286)
11 PLN03201 RAB geranylgeranyl tr 100.0 4.5E-50 9.7E-55 345.0 22.4 233 3-235 55-288 (316)
12 KOG0365 Beta subunit of farnes 100.0 1.2E-50 2.6E-55 336.8 16.5 228 6-235 74-307 (423)
13 cd02890 PTase Protein prenyltr 100.0 8.3E-49 1.8E-53 334.4 22.9 233 3-235 46-283 (286)
14 KOG0367 Protein geranylgeranyl 100.0 2.7E-49 5.8E-54 323.0 17.2 232 3-236 10-268 (347)
15 PLN02710 farnesyltranstransfer 100.0 1E-47 2.2E-52 338.1 21.4 233 3-235 91-386 (439)
16 cd02893 FTase Protein farnesyl 100.0 2.9E-47 6.4E-52 325.6 22.0 233 3-235 46-296 (299)
17 KOG0366 Protein geranylgeranyl 100.0 1.7E-41 3.7E-46 273.0 19.7 233 3-235 65-298 (329)
18 COG5029 CAL1 Prenyltransferase 100.0 3.6E-40 7.7E-45 272.0 16.4 232 4-235 75-311 (342)
19 KOG0367 Protein geranylgeranyl 100.0 2.5E-36 5.5E-41 247.0 19.1 233 3-235 57-316 (347)
20 KOG0365 Beta subunit of farnes 100.0 1.3E-33 2.8E-38 235.2 17.1 230 6-235 122-366 (423)
21 cd00688 ISOPREN_C2_like This g 100.0 4.3E-31 9.2E-36 223.5 20.6 231 4-236 52-298 (300)
22 cd00688 ISOPREN_C2_like This g 100.0 7.3E-29 1.6E-33 209.8 19.7 228 6-236 1-249 (300)
23 TIGR03463 osq_cycl 2,3-oxidosq 99.9 1.9E-26 4E-31 214.6 18.2 221 6-227 330-616 (634)
24 TIGR01507 hopene_cyclase squal 99.9 3.4E-25 7.4E-30 206.0 19.4 212 6-218 338-599 (635)
25 cd02892 SQCY_1 Squalene cyclas 99.9 2.7E-24 5.8E-29 201.2 18.5 213 5-218 330-605 (634)
26 PLN03012 Camelliol C synthase 99.9 2.2E-24 4.7E-29 200.9 17.4 218 6-227 441-734 (759)
27 cd02889 SQCY Squalene cyclase 99.9 4.4E-24 9.5E-29 186.7 18.3 228 6-237 1-290 (348)
28 PLN02993 lupeol synthase 99.9 3.9E-24 8.5E-29 199.6 17.9 221 6-227 441-734 (763)
29 cd02889 SQCY Squalene cyclase 99.9 2.1E-23 4.5E-28 182.4 17.2 212 5-217 47-318 (348)
30 TIGR01787 squalene_cyclas squa 99.9 2.5E-23 5.4E-28 193.5 17.5 221 6-227 321-601 (621)
31 PF13249 Prenyltrans_2: Prenyl 99.9 2E-22 4.4E-27 148.3 7.9 109 58-169 1-113 (113)
32 TIGR03463 osq_cycl 2,3-oxidosq 99.9 2.4E-20 5.1E-25 173.9 19.6 229 6-236 278-575 (634)
33 cd02892 SQCY_1 Squalene cyclas 99.8 1.1E-19 2.5E-24 170.2 19.6 229 6-236 280-575 (634)
34 PF13249 Prenyltrans_2: Prenyl 99.8 4.9E-21 1.1E-25 140.9 8.4 108 106-216 1-112 (113)
35 TIGR01507 hopene_cyclase squal 99.8 2.9E-19 6.3E-24 166.5 20.7 229 6-236 289-569 (635)
36 COG1689 Uncharacterized protei 99.8 8E-20 1.7E-24 144.2 13.4 221 3-235 5-268 (274)
37 TIGR01787 squalene_cyclas squa 99.8 1.4E-18 3.1E-23 161.8 18.3 228 6-236 269-559 (621)
38 cd02896 complement_C3_C4_C5 Pr 99.8 3.9E-18 8.4E-23 146.2 17.8 197 6-217 54-283 (297)
39 PLN03012 Camelliol C synthase 99.8 3.8E-18 8.2E-23 159.4 15.1 165 5-170 514-723 (759)
40 cd02897 A2M_2 Proteins similar 99.8 5.1E-17 1.1E-21 139.1 19.1 199 6-217 44-278 (292)
41 PLN02993 lupeol synthase 99.8 4.5E-17 9.8E-22 152.6 17.5 206 30-236 415-691 (763)
42 COG1689 Uncharacterized protei 99.6 1.3E-14 2.8E-19 114.9 13.4 151 30-191 120-272 (274)
43 KOG0497 Oxidosqualene-lanoster 99.6 2.4E-14 5.3E-19 130.0 16.1 159 56-218 516-722 (760)
44 cd02896 complement_C3_C4_C5 Pr 99.5 3.3E-13 7.2E-18 115.8 15.0 171 54-237 54-257 (297)
45 cd02897 A2M_2 Proteins similar 99.5 5E-12 1.1E-16 108.2 17.3 187 37-236 27-249 (292)
46 PF13243 Prenyltrans_1: Prenyl 99.5 3.6E-14 7.8E-19 103.7 3.2 106 102-211 1-108 (109)
47 PF00432 Prenyltrans: Prenyltr 99.4 1.5E-13 3.2E-18 83.9 5.2 44 148-191 1-44 (44)
48 cd02891 A2M_like Proteins simi 99.4 1.6E-11 3.6E-16 104.2 18.1 197 6-216 51-267 (282)
49 PF13243 Prenyltrans_1: Prenyl 99.3 1.4E-12 2.9E-17 95.3 4.2 105 54-162 1-107 (109)
50 PF07678 A2M_comp: A-macroglob 99.3 4.9E-11 1.1E-15 99.7 12.7 194 9-217 2-230 (246)
51 PF00432 Prenyltrans: Prenyltr 99.3 5.2E-12 1.1E-16 77.0 3.9 44 100-143 1-44 (44)
52 COG1657 SqhC Squalene cyclase 99.2 2.9E-11 6.4E-16 108.6 8.4 204 19-228 248-491 (517)
53 cd02891 A2M_like Proteins simi 99.2 6.3E-10 1.4E-14 94.5 15.2 145 53-209 50-207 (282)
54 KOG0497 Oxidosqualene-lanoster 99.2 1.2E-10 2.7E-15 106.2 9.2 115 6-121 591-721 (760)
55 PF07678 A2M_comp: A-macroglob 98.7 9.8E-08 2.1E-12 79.8 10.1 153 57-221 2-174 (246)
56 COG1657 SqhC Squalene cyclase 98.4 4.6E-07 1E-11 81.9 5.6 177 55-235 236-439 (517)
57 TIGR02474 pec_lyase pectate ly 98.0 0.0001 2.2E-09 62.4 11.7 86 82-167 44-156 (290)
58 TIGR02474 pec_lyase pectate ly 97.9 0.00019 4.2E-09 60.8 10.8 133 32-164 42-222 (290)
59 PLN02279 ent-kaur-16-ene synth 97.2 0.0081 1.7E-07 58.0 13.9 203 6-236 35-281 (784)
60 KOG1366 Alpha-macroglobulin [P 97.2 0.0075 1.6E-07 61.5 13.5 86 36-121 948-1045(1436)
61 PLN02592 ent-copalyl diphospha 96.5 0.08 1.7E-06 51.3 14.0 56 8-64 119-176 (800)
62 KOG1366 Alpha-macroglobulin [P 96.1 0.095 2.1E-06 53.8 12.4 69 6-74 966-1046(1436)
63 PF09492 Pec_lyase: Pectic aci 95.9 0.028 6.2E-07 47.8 6.7 84 128-211 37-147 (289)
64 PLN02279 ent-kaur-16-ene synth 95.6 0.6 1.3E-05 45.4 15.3 55 8-63 77-135 (784)
65 PLN02592 ent-copalyl diphospha 95.5 0.055 1.2E-06 52.3 7.9 97 8-112 76-176 (800)
66 PF09492 Pec_lyase: Pectic aci 94.2 0.21 4.5E-06 42.6 7.1 136 32-167 37-220 (289)
67 PF05817 Ribophorin_II: Oligos 93.0 4.3 9.4E-05 38.7 14.5 131 30-191 46-177 (636)
68 PF01122 Cobalamin_bind: Eukar 90.8 1.4 3E-05 38.3 7.8 117 39-168 149-278 (326)
69 PF01122 Cobalamin_bind: Eukar 89.5 1.6 3.5E-05 37.9 7.2 109 36-168 189-311 (326)
70 TIGR01577 oligosac_amyl oligos 75.5 76 0.0017 30.2 16.6 65 152-216 501-583 (616)
71 PF05817 Ribophorin_II: Oligos 55.9 2E+02 0.0043 27.8 15.8 76 32-118 86-162 (636)
72 COG2373 Large extracellular al 43.6 48 0.001 35.4 5.6 43 53-95 1200-1243(1621)
73 PF07470 Glyco_hydro_88: Glyco 42.1 60 0.0013 28.1 5.4 65 150-214 217-294 (336)
74 COG2373 Large extracellular al 39.9 45 0.00097 35.6 4.7 43 149-191 1200-1243(1621)
75 PF07470 Glyco_hydro_88: Glyco 39.6 86 0.0019 27.1 6.0 65 54-118 217-294 (336)
76 PRK13617 psbV cytochrome c-550 34.8 43 0.00093 26.3 2.9 66 99-169 99-165 (170)
77 PF15144 DUF4576: Domain of un 34.6 1.1E+02 0.0024 20.7 4.4 25 148-172 56-80 (88)
78 PRK13621 psbV cytochrome c-550 33.7 95 0.0021 24.4 4.6 52 102-169 109-163 (170)
79 cd00249 AGE AGE domain; N-acyl 29.8 3.7E+02 0.0081 23.3 8.9 68 149-216 77-159 (384)
80 TIGR03046 PS_II_psbV2 photosys 27.2 1.4E+02 0.0031 23.1 4.6 52 102-169 98-152 (155)
81 TIGR03046 PS_II_psbV2 photosys 26.4 90 0.0019 24.2 3.3 57 148-217 96-152 (155)
82 PF10022 DUF2264: Uncharacteri 25.0 4.9E+02 0.011 23.1 15.2 192 1-198 129-352 (361)
83 TIGR01577 oligosac_amyl oligos 24.7 6.1E+02 0.013 24.1 10.9 66 56-121 501-584 (616)
84 TIGR01535 glucan_glucosid gluc 24.7 6.5E+02 0.014 24.4 9.8 75 82-160 298-385 (648)
85 TIGR01535 glucan_glucosid gluc 24.5 77 0.0017 30.5 3.2 79 33-113 297-386 (648)
86 COG1331 Highly conserved prote 22.6 5.4E+02 0.012 25.0 8.3 24 148-171 296-320 (667)
No 1
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1e-59 Score=404.72 Aligned_cols=236 Identities=79% Similarity=1.390 Sum_probs=223.8
Q ss_pred CCcccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (239)
Q Consensus 1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (239)
|-++.++||++||+++++.+++|.....++++++.+||++.+|++|+..+.++++++++||++||++||||+..++.++|
T Consensus 5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h 84 (316)
T PLN03201 5 MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPH 84 (316)
T ss_pred hhhccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCccc
Confidence 34789999999999999988999877667889999999999999999876778999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (239)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~ 160 (239)
+.+||+|+++|.++++++.+|++++++||.++|++||||.++++++.|+++||||++++.+++.++.++++++++||++|
T Consensus 85 ~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~sc 164 (316)
T PLN03201 85 ILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSC 164 (316)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence 99999999999999888889999999999999999999999999999999999999999999987778899999999999
Q ss_pred cCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccCC
Q 026402 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 161 Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l~ 236 (239)
|++||||+.+|+.|+|+++||||+++|.+++..+..+.+++++||++||..+|||++||||.+|+|||||++++|.
T Consensus 165 q~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ 240 (316)
T PLN03201 165 KNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI 240 (316)
T ss_pred cCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999888889999999999999999999999999999999999999874
No 2
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-59 Score=377.72 Aligned_cols=234 Identities=67% Similarity=1.207 Sum_probs=227.8
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (239)
++..+||++||++..+++.+|.++..++-++++.||.+.+|.++++....++++++.|+++||+++|||+.+++++||+.
T Consensus 17 ~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll 96 (329)
T KOG0366|consen 17 ELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLL 96 (329)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHH
Confidence 57789999999999999999999999999999999999999999998777899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (239)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~ 162 (239)
+|++|+++|.+.+.+..+|++++.+||..+|++||+|.+.-++|.|+|++|||+++|++|+.++.++++++++|+++|-|
T Consensus 97 ~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN 176 (329)
T KOG0366|consen 97 YTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYN 176 (329)
T ss_pred HHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccCC
Q 026402 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l~ 236 (239)
-||||+.+|+.|||+...||++++|+++++++.+|.+.+..||+.||.+.||.+|||.|.||+|||||+++||.
T Consensus 177 ~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~ 250 (329)
T KOG0366|consen 177 FDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLA 250 (329)
T ss_pred cCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.3e-58 Score=406.92 Aligned_cols=233 Identities=31% Similarity=0.529 Sum_probs=217.8
Q ss_pred CcccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (239)
Q Consensus 2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (239)
.+|++++|++|+++..++ -+..+...+.+++|.+||+|.+|.+|+.. +..+++++++||.+||++||||+..++.++|
T Consensus 42 ~~l~~~~H~~yl~~~l~~-lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~h 120 (439)
T PLN02710 42 LELWREKHLEYLTRGLRQ-LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPH 120 (439)
T ss_pred ccccHHHHHHHHHHHhhc-CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCcc
Confidence 479999999999998774 33445556789999999999999999973 4457899999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHH
Q 026402 81 VLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157 (239)
Q Consensus 81 ~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l 157 (239)
+..||+|+.+|.++++ ++.+|++++++||.++|++||||.+.+++|+|+++||||++++.+++.++..+.+++++||
T Consensus 121 l~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I 200 (439)
T PLN02710 121 LATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYI 200 (439)
T ss_pred HHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHH
Confidence 9999999999999985 5678999999999999999999999999999999999999999999998888999999999
Q ss_pred HhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccC
Q 026402 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 158 ~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
++||++||||+..|+.|+|+++||||+++|.+|++.+.+|.+++++||+.||+.+|||+|||||.+|+|||||++++|
T Consensus 201 ~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L 278 (439)
T PLN02710 201 LSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 278 (439)
T ss_pred HHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHH
Confidence 999999999999999999999999999999999998889999999999999999999999999999999999999986
No 4
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=8.5e-56 Score=378.23 Aligned_cols=229 Identities=39% Similarity=0.679 Sum_probs=212.3
Q ss_pred HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhH
Q 026402 6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY 83 (239)
Q Consensus 6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~ll~~-~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~ 83 (239)
+++|++|++++.. .+++|... +.++++.+||++.+|.+|+. ...+.++++++||++||++||||+..++.++|+.+
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~~~--d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~ 78 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFTSL--DASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT 78 (299)
T ss_pred ChHHHHHHHHHhhcCCcccccc--ccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence 5899999999988 44556533 57899999999999999997 33457899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402 84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (239)
Q Consensus 84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~ 160 (239)
||+|+.+|.+++. .+.++++++++||.++|++||||...+.+++|+++|||+++++.+++.+++.+++++++||++|
T Consensus 79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c 158 (299)
T cd02893 79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC 158 (299)
T ss_pred HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence 9999999999986 4567899999999999999999999999999999999999999999988888899999999999
Q ss_pred cCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc-CCccCCCCCCCCChhhhhhhhccCC
Q 026402 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 161 Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~k~~D~c~s~~~~~~l~ 236 (239)
|++||||+.+|+.|+|+++||||+++|.+++..+.++.+++++||++||.+ +|||++||+|.+|+|||||++++|.
T Consensus 159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ 235 (299)
T cd02893 159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLP 235 (299)
T ss_pred CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999998889999999999999987 9999999999999999999999863
No 5
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.8e-55 Score=375.19 Aligned_cols=232 Identities=62% Similarity=1.163 Sum_probs=218.8
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcc-CCCCCCCCCCCCCCchh
Q 026402 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVL 82 (239)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~ 82 (239)
|+++||++|++++.+....+.....+.++++.+||++++|.+|+..+.++++++++||++|| +++|||...++.++|+.
T Consensus 1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~ 80 (287)
T cd02894 1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHIL 80 (287)
T ss_pred CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Confidence 58999999999999965556677778999999999999999999876678999999999999 78999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCC--HHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402 83 YTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (239)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~--~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~ 160 (239)
+||+|+.+|.+++.++.++ ++++++||.++|++||||.+.+.+++|+++||+|++++.+++..+.++++++++||++|
T Consensus 81 ~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~ 160 (287)
T cd02894 81 STLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC 160 (287)
T ss_pred HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence 9999999999987767777 89999999999999999999999999999999999999999987788999999999999
Q ss_pred cCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccC
Q 026402 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 161 Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
|++||||+.+|+.++|+++||||+++|.+++..+.++.+++++||++||.++|||++||+|.+|+|||||++++|
T Consensus 161 q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l 235 (287)
T cd02894 161 YNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSL 235 (287)
T ss_pred CCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHH
Confidence 999999999999999999999999999999998888999999999999999999999999999999999999987
No 6
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=5.7e-53 Score=361.84 Aligned_cols=229 Identities=34% Similarity=0.594 Sum_probs=207.7
Q ss_pred HHHHHHHHHHcccCC-CCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcc----CCCCCCCCCCC-
Q 026402 6 ADKHVKYIISVEKKK-DSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQ----DESGGFAGNIG- 76 (239)
Q Consensus 6 ~~~~~~yl~~~q~~d-g~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q----~~dGgf~~~~~- 76 (239)
++||++|++++.++- .+|. ..+.++++.+||+|.+|.+|+... .++++++++||.+|| ++||||+..++
T Consensus 1 ~~~H~~y~~~~l~~lp~~~~--~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~ 78 (307)
T cd02895 1 KKKHVKFFQRCLQLLPSSYQ--SLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTL 78 (307)
T ss_pred ChHHHHHHHHHhhhCCchhh--hhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence 479999999988732 3343 346899999999999999999764 468899999999999 99999999876
Q ss_pred ---------CCCchhHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhccCCCCCcccCC---CCCCCcchhHHHHhHHHhhc
Q 026402 77 ---------HDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI---WGEVDTRFSYIAICCLSILQ 143 (239)
Q Consensus 77 ---------~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~---~~~~d~~~ty~al~~l~~l~ 143 (239)
+++|+..||+|+.+|.+++. .+.+|++++++||.++|++||||++.+ .+++|+++||||++++.+++
T Consensus 79 ~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~ 158 (307)
T cd02895 79 GLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD 158 (307)
T ss_pred ccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence 47999999999999999975 456789999999999999999999987 78999999999999999999
Q ss_pred cCC--hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC---CCCHHHHHHHHHhccccCCccCCC
Q 026402 144 RLD--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---HVDKDLLGWWLCERQVKSGGLNGR 218 (239)
Q Consensus 144 ~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~---~~~~~~~~~~L~~~Q~~~GGf~~~ 218 (239)
..+ .++.+++++||++||++||||+..|+.|+|+++||||+++|.+++..+ .++.+++++||++||+.+|||++|
T Consensus 159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr 238 (307)
T cd02895 159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR 238 (307)
T ss_pred CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 876 578999999999999999999999999999999999999999999875 688999999999999999999999
Q ss_pred CCCCCChhhhhhhhccCC
Q 026402 219 PEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 219 ~~k~~D~c~s~~~~~~l~ 236 (239)
|+|.+|+|||||++++|.
T Consensus 239 ~~k~~D~cysfw~~a~L~ 256 (307)
T cd02895 239 PNKPADTCYSFWVGASLK 256 (307)
T ss_pred CCCCCccchhhHHHHHHH
Confidence 999999999999999873
No 7
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=9.2e-52 Score=354.38 Aligned_cols=233 Identities=22% Similarity=0.318 Sum_probs=216.9
Q ss_pred cccHHHHHHHHHHcc----cCCCCcccccc----------ccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCC
Q 026402 3 ELAADKHVKYIISVE----KKKDSFESVVM----------EHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDE 67 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q----~~dg~~~~~~~----------~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~ 67 (239)
.+++++.++||.++| +++|||..... ++++++.||||+.+|.+|+.. ..++++++++||++||++
T Consensus 48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~ 127 (307)
T cd02895 48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP 127 (307)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence 578899999999999 99999986543 478999999999999999864 346899999999999999
Q ss_pred CCCCCCCC---CCCCchhHHHHHHHHHHhcCCCC--CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhh
Q 026402 68 SGGFAGNI---GHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142 (239)
Q Consensus 68 dGgf~~~~---~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l 142 (239)
||||+..+ +.++|+..||+|+.++.+++..+ .++++++++||.+||++||||+..|+.|+|.++|||++++|.++
T Consensus 128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL 207 (307)
T cd02895 128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLL 207 (307)
T ss_pred CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHc
Confidence 99999987 78999999999999999999765 57899999999999999999999999999999999999999999
Q ss_pred ccCC---hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc-cCCccCCC
Q 026402 143 QRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGR 218 (239)
Q Consensus 143 ~~~~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~ 218 (239)
+.+. .++.+++++||++||+++|||+.+|++++|++||||++++|.+++..+.+|.+++.+||++||+ .+|||+++
T Consensus 208 ~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~ 287 (307)
T cd02895 208 GKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKN 287 (307)
T ss_pred CCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCC
Confidence 9875 6889999999999999999999999999999999999999999998888999999999999985 58999999
Q ss_pred CCCCCChhhhhhhhccC
Q 026402 219 PEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 219 ~~k~~D~c~s~~~~~~l 235 (239)
|+|.||.|||||++++|
T Consensus 288 p~~~~D~~ht~~~la~L 304 (307)
T cd02895 288 PDSHPDPLHSYLGLAAL 304 (307)
T ss_pred CCCCCChhHHHHHHHHH
Confidence 99999999999999987
No 8
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-52 Score=346.07 Aligned_cols=234 Identities=43% Similarity=0.706 Sum_probs=218.8
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccCCCCCCCCCCCCCCch
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~ 81 (239)
.+.+++|+.|+.+.-...-.+.++..++.+++..||...++.++++.. .+.+++.+.++++|+.+.|||+..+++++|+
T Consensus 25 ~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL 104 (342)
T COG5029 25 QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHL 104 (342)
T ss_pred ccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhH
Confidence 577899999999987665556677778899999999999999999875 6789999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHH
Q 026402 82 LYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIV 158 (239)
Q Consensus 82 ~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~ 158 (239)
.+|++|+++|.+++. ++.++++.+.+||..+|+|||+|.+.-.+++|++..|+|+.++++++.++.++.+.+++||+
T Consensus 105 ~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~ 184 (342)
T COG5029 105 ASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLK 184 (342)
T ss_pred HHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 999999999999975 45667888999999999999999998889999999999999999999999999999999999
Q ss_pred hccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCC-HHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccCC
Q 026402 159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD-KDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 159 ~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~-~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l~ 236 (239)
+|||.||||+..|+.|+|+++||||+++|++|+.++..+ ++++++||++||.+.|||+||+||.+|+||+||+++||.
T Consensus 185 kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~ 263 (342)
T COG5029 185 KCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLA 263 (342)
T ss_pred HhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHH
Confidence 999999999999999999999999999999999999888 799999999999999999999999999999999999974
No 9
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.2e-51 Score=351.63 Aligned_cols=233 Identities=22% Similarity=0.349 Sum_probs=218.4
Q ss_pred cccHHHHHHHHHHcc-cCCCCccccccccchHHHHHHHHHHHHhhCCCCCcC--HHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402 3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKCQDESGGFAGNIGHDP 79 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~--~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (239)
.++++++++||+++| +++|+|......++++..||.|+.+|.+++..+.++ ++++++||+++|++||||+..++.++
T Consensus 48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~ 127 (287)
T cd02894 48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEV 127 (287)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCc
Confidence 468899999999999 689999877666788889999999999987544456 89999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (239)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~ 159 (239)
|+..||+|+++|.+++..+.++++++++||.++|++||||+++|++++|+++|||++++|.+++..+..+.+++++||++
T Consensus 128 d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~ 207 (287)
T cd02894 128 DTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCE 207 (287)
T ss_pred hHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHH
Confidence 99999999999999988788899999999999999999999999999999999999999999999888899999999999
Q ss_pred ccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcc-ccCCccCCCCCCCCChhhhhhhhccC
Q 026402 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 160 ~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q-~~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
+|+++|||+.+|+.++|++||||++++|.+++..+..+.+++.+||+++| .++|||+++|+|.+|+|||||++++|
T Consensus 208 ~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~L 284 (287)
T cd02894 208 RQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGL 284 (287)
T ss_pred hCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999877789999999999999 57899999999999999999999887
No 10
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=1.1e-51 Score=352.23 Aligned_cols=230 Identities=45% Similarity=0.795 Sum_probs=214.9
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhcc-CCCCCCCCCCCCCCchhH
Q 026402 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLY 83 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~-~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~~ 83 (239)
+++|++||++.++.+ .+.....++++++.+||++.+|.+|+. .+..+++++++||++|| ++||||+..+++++|+..
T Consensus 1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~ 79 (286)
T cd02890 1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAS 79 (286)
T ss_pred ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHH
Confidence 589999999999977 556566678999999999999999998 34558999999999999 999999999999999999
Q ss_pred HHHHHHHHHhcCC--CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhcc
Q 026402 84 TLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (239)
Q Consensus 84 T~~al~~L~~l~~--~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q 161 (239)
||+|+.+|.+++. .+.++++++++||.++|++||||.+.+.+++|+++||++++++.+++.....+++++++||++||
T Consensus 80 T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q 159 (286)
T cd02890 80 TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ 159 (286)
T ss_pred HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence 9999999999987 57778999999999999999999999989999999999999999999877788999999999999
Q ss_pred CCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCC-ccCCCCCCCCChhhhhhhhccCC
Q 026402 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 162 ~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~G-Gf~~~~~k~~D~c~s~~~~~~l~ 236 (239)
++||||+.+|+.++|+++||||+++|.+++..++++++++++||++||+++| ||++||+|.+|+||+||++++|.
T Consensus 160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~ 235 (286)
T cd02890 160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLK 235 (286)
T ss_pred CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHH
Confidence 9999999999999999999999999999999888999999999999998887 99999999999999999999873
No 11
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=4.5e-50 Score=345.03 Aligned_cols=233 Identities=21% Similarity=0.342 Sum_probs=220.2
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (239)
.++++++++||.++|+++|+|.....+++++..||+|+.+|.+++....++++++++||.++|++||||...++.+.|+.
T Consensus 55 ~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r 134 (316)
T PLN03201 55 DVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTR 134 (316)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHH
Confidence 57899999999999999999997776778999999999999999766567899999999999999999999888899999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (239)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~ 162 (239)
.||+|++++.+++..+.++++++++||.+||++||||+++|++|+|..+|||++++|.+++.++..+.+++++||.++|.
T Consensus 135 ~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~ 214 (316)
T PLN03201 135 FSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQV 214 (316)
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCC
Confidence 99999999999998777899999999999999999999999999999999999999999998877788999999999999
Q ss_pred CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc-CCccCCCCCCCCChhhhhhhhccC
Q 026402 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
++|||+.+|++.+|++||||++++|.+++..+.+|.+++.+||++||++ .|||+++|+|.||.|||||.+++|
T Consensus 215 ~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~l 288 (316)
T PLN03201 215 KSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGL 288 (316)
T ss_pred CCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHH
Confidence 9999999999999999999999999999988889999999999999975 799999999999999999999876
No 12
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=336.77 Aligned_cols=228 Identities=31% Similarity=0.574 Sum_probs=210.9
Q ss_pred HHHHHHHHHHcccCC-CCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhH
Q 026402 6 ADKHVKYIISVEKKK-DSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY 83 (239)
Q Consensus 6 ~~~~~~yl~~~q~~d-g~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~ 83 (239)
++||..||.+..+.- ..|. -.+.++.|..||.+.+|++|+.. +..-.+++|+||..||.|.|||++-||..+|+..
T Consensus 74 r~kH~~YL~~~Lr~Lp~~~~--~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~ 151 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQYT--CLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAP 151 (423)
T ss_pred HHHHHHHHHHHHHhCCCccc--ccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhH
Confidence 899999999977643 2233 34789999999999999999964 3345788999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402 84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (239)
Q Consensus 84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~ 160 (239)
||+|+.+|.+++. ++.+++++++.||.+++++||||....++|.|+|.+|||+++..+++.+.++-.+.+.+||.+|
T Consensus 152 TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~C 231 (423)
T KOG0365|consen 152 TYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASC 231 (423)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Confidence 9999999999975 5788999999999999999999999999999999999999999999998888889999999999
Q ss_pred cCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc-cCCccCCCCCCCCChhhhhhhhccC
Q 026402 161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 161 Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
|+.+|||+..|+.|+|.+|||||+|+|++|+..+..|.+++.+|...||. .+|||+||.||.+|-|||||++++.
T Consensus 232 QtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~ 307 (423)
T KOG0365|consen 232 QTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASA 307 (423)
T ss_pred ccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999996 7899999999999999999999874
No 13
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=8.3e-49 Score=334.43 Aligned_cols=233 Identities=25% Similarity=0.434 Sum_probs=219.0
Q ss_pred cccHHHHHHHHHHcc-cCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402 3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (239)
..+++++++||+++| +++|+|.....+++++..||+|+.+|.+++.. ..++++++++||.++|++||||...+..++
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~ 125 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEV 125 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCc
Confidence 568999999999999 99999998777789999999999999999973 456889999999999999999999888899
Q ss_pred chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (239)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~ 159 (239)
|+..||+|+.+|.+++.....+++++++||.++|++||||+.+|++++|+++|||++++|.+++..+.++++++++||++
T Consensus 126 d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~ 205 (286)
T cd02890 126 DTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVE 205 (286)
T ss_pred hHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 99999999999999987767789999999999999999999999999999999999999999999888899999999999
Q ss_pred ccCCCC-CccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHH-hccccCCccCCCCCCCCChhhhhhhhccC
Q 026402 160 CKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC-ERQVKSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 160 ~Q~~dG-Gf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~-~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
||+++| ||+.+|+.++|++||||++++|.+++..+..+.+++.+||+ .+|.++|||+++|++.+|.|||||.+++|
T Consensus 206 ~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~l 283 (286)
T cd02890 206 RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGL 283 (286)
T ss_pred hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHH
Confidence 999997 99999999999999999999999999877789999999999 56789999999999999999999999876
No 14
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-49 Score=323.04 Aligned_cols=232 Identities=34% Similarity=0.592 Sum_probs=204.1
Q ss_pred cccHHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCC--------CCCCC
Q 026402 3 ELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES--------GGFAG 73 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~d--------Ggf~~ 73 (239)
++.++||++|+++..+ -+-.|... +.+++..+||++.+|++|+..+.++++..|+||.+.|-.. .||-+
T Consensus 10 ~~~~~kH~~ff~RhL~llP~~y~sh--d~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G 87 (347)
T KOG0367|consen 10 RFERKKHIKFFERHLQLLPSPYQSH--DTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG 87 (347)
T ss_pred hhhHHHHHHHHHHHHHhCCCccccc--ccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence 6889999999999776 33444433 4688888999999999999988889999999999987422 24443
Q ss_pred C----------CCCCCchhHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhccCCCCCcccCC-CCCCCcchhHHHHhHHHh
Q 026402 74 N----------IGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYIAICCLSI 141 (239)
Q Consensus 74 ~----------~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~-~~~~d~~~ty~al~~l~~ 141 (239)
+ +..++|+..||.++..|..+++ ++.+|++.+++++..+|++||+|...+ +.++|+|+.|||++++++
T Consensus 88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ym 167 (347)
T KOG0367|consen 88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYM 167 (347)
T ss_pred eccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHH
Confidence 2 1246899999999999999975 788999999999999999999998655 468999999999999999
Q ss_pred hccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCC--C----CCCHHHHHHHHHhccccCCcc
Q 026402 142 LQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--H----HVDKDLLGWWLCERQVKSGGL 215 (239)
Q Consensus 142 l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~--~----~~~~~~~~~~L~~~Q~~~GGf 215 (239)
++....++.++++.||++||++||||+..|+.|+|.++|||||++|++++++ + ..+++++++|+..||..+|||
T Consensus 168 Ld~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGf 247 (347)
T KOG0367|consen 168 LDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGF 247 (347)
T ss_pred hccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCc
Confidence 9988889999999999999999999999999999999999999999999986 2 345899999999999999999
Q ss_pred CCCCCCCCChhhhhhhhccCC
Q 026402 216 NGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 216 ~~~~~k~~D~c~s~~~~~~l~ 236 (239)
+|||||++|+||+||++++|+
T Consensus 248 qGR~NKp~DTCYaFWigasLk 268 (347)
T KOG0367|consen 248 QGRTNKPVDTCYAFWIGASLK 268 (347)
T ss_pred CCCCCCCchhHHHHHHHHHHH
Confidence 999999999999999999985
No 15
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1e-47 Score=338.12 Aligned_cols=233 Identities=18% Similarity=0.301 Sum_probs=216.3
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (239)
+.+++++++||.++|+++|||....++.+++..||+|+.+|.+|+.. ..++++++++||++||++||||...++.++
T Consensus 91 ~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~ 170 (439)
T PLN02710 91 DELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEM 170 (439)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCC
Confidence 45779999999999999999998877889999999999999999964 356899999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (239)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~ 159 (239)
|+..||+|++++.+++.++..+++++++||.+||+.||||+++|++|+|.++|||++++|.+++.++.++.+++++||++
T Consensus 171 D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~ 250 (439)
T PLN02710 171 DVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVF 250 (439)
T ss_pred CcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHH
Confidence 99999999999999998877889999999999999999999999999999999999999999999888899999999999
Q ss_pred ccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC---------------------------------------------
Q 026402 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH--------------------------------------------- 194 (239)
Q Consensus 160 ~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~--------------------------------------------- 194 (239)
+|+.+|||+++|++.+|++|+||++++|+++++..
T Consensus 251 rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T PLN02710 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKV 330 (439)
T ss_pred hcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998531
Q ss_pred --------------CCCHHHHHHHHHhcc-ccCCccCCCCCCCCChhhhhhhhccC
Q 026402 195 --------------HVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 195 --------------~~~~~~~~~~L~~~Q-~~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
.++.+++.+||+.|| .+.|||+..|+|.+|.+||+++++.|
T Consensus 331 ~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGL 386 (439)
T PLN02710 331 GFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGL 386 (439)
T ss_pred ccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHH
Confidence 145678999999885 67899999999999999999999876
No 16
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=2.9e-47 Score=325.61 Aligned_cols=233 Identities=22% Similarity=0.328 Sum_probs=216.0
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (239)
++++++.++||+++|+++|+|.....+++++..||+|+.+|.+++.. ..++++++++||+++|++||||...++.++
T Consensus 46 ~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~ 125 (299)
T cd02893 46 QSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEV 125 (299)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence 35679999999999999999998777789999999999999999974 345788999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (239)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~ 159 (239)
|+..||+|+.++.+++..+..+++++++||.+||++||||++.|++++|.++|||++++|.+++..+.++.+++++||++
T Consensus 126 D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~ 205 (299)
T cd02893 126 DVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVA 205 (299)
T ss_pred hHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHh
Confidence 99999999999999988777789999999999999999999999999999999999999999998877899999999999
Q ss_pred ccCC-CCCccCCCCCCCchhhHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHhcc-ccCCccCCCCCCCCC
Q 026402 160 CKNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPD 224 (239)
Q Consensus 160 ~Q~~-dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~~L~~~Q-~~~GGf~~~~~k~~D 224 (239)
+|.+ +|||+.+|++.+|++||||++++|.+++.. ..++.+++.+||+.+| .++|||+++|++.+|
T Consensus 206 ~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D 285 (299)
T cd02893 206 RQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRD 285 (299)
T ss_pred hcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCC
Confidence 9988 899999999999999999999999999863 3468899999999665 678999999999999
Q ss_pred hhhhhhhhccC
Q 026402 225 VGLLLLVGSFK 235 (239)
Q Consensus 225 ~c~s~~~~~~l 235 (239)
.+||+..+++|
T Consensus 286 ~yHT~~~l~~L 296 (299)
T cd02893 286 FYHTCYALSGL 296 (299)
T ss_pred chhHHHHHHHH
Confidence 99999999876
No 17
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=272.98 Aligned_cols=233 Identities=21% Similarity=0.336 Sum_probs=223.1
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (239)
.+++|+++.|++++|+.+|||....+..+.+-.|+.||.+|++....+..++++++.||...|++||.|......+-++.
T Consensus 65 ~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTR 144 (329)
T KOG0366|consen 65 RMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTR 144 (329)
T ss_pred hhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchh
Confidence 67899999999999999999998888888898899999999999877667899999999999999999999888899999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (239)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~ 162 (239)
.+|+|+..|.+|+.++.++++++++|+.+|.|-||||+..|+.|++....||.+++|++++++...+.+.+-.||-..|.
T Consensus 145 fs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~ 224 (329)
T KOG0366|consen 145 FSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQL 224 (329)
T ss_pred hhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc-cCCccCCCCCCCCChhhhhhhhccC
Q 026402 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
+.||...+|.+-+|.+|.+|++++|+++++++.++.+++.+||++||. +.|||+.||+..+|+.|+++++|.|
T Consensus 225 ~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGL 298 (329)
T KOG0366|consen 225 PSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGL 298 (329)
T ss_pred CCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999995 8999999999999999999998865
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-40 Score=272.02 Aligned_cols=232 Identities=20% Similarity=0.366 Sum_probs=217.0
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (239)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (239)
+++|+.+-|+.+++.+.|+|+....+++.+..||+|+.+|.+++.. ...+++.+.+||.++|+|||+|-....++.+
T Consensus 75 ~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevD 154 (342)
T COG5029 75 VDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVD 154 (342)
T ss_pred hhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcch
Confidence 4678899999999999999998888899999999999999999743 3457888999999999999999988778899
Q ss_pred hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhc-HHHHHHHHHh
Q 026402 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN-VDKAVEYIVS 159 (239)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~-~~~~~~~l~~ 159 (239)
....|.|+.+|.+++.++..+.+.+++||++||+.||||+..|..|++..+|||++++|++++.++..+ .|++++||.+
T Consensus 155 tr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~ 234 (342)
T COG5029 155 TRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAE 234 (342)
T ss_pred HHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 999999999999999988889999999999999999999999999999999999999999999998877 6999999999
Q ss_pred ccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc-CCccCCCCCCCCChhhhhhhhccC
Q 026402 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 160 ~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
+|.+.|||.+++++.+|.+|.||++++|+++++.+.++.+++.+||+.||.+ .|||+.+|.+.+|.+||=++++.|
T Consensus 235 RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagL 311 (342)
T COG5029 235 RQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGL 311 (342)
T ss_pred cccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999998889999999999999865 899999999999999999988876
No 19
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-36 Score=246.98 Aligned_cols=233 Identities=22% Similarity=0.361 Sum_probs=207.5
Q ss_pred cccHHHHHHHHHHccc-C--CCC-----cccc----------ccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHh
Q 026402 3 ELAADKHVKYIISVEK-K--KDS-----FESV----------VMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILK 63 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~-~--dg~-----~~~~----------~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~ 63 (239)
.++++.+++||.+.|- | +.+ |..+ ..+.+.+..||++++.|..||.. ..++++.+++++..
T Consensus 57 ~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~ 136 (347)
T KOG0367|consen 57 SVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSA 136 (347)
T ss_pred ccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHH
Confidence 4678899999999885 3 122 3211 12456788999999999999975 45789999999999
Q ss_pred ccCCCCCCCCCC-CCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhh
Q 026402 64 CQDESGGFAGNI-GHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142 (239)
Q Consensus 64 ~q~~dGgf~~~~-~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l 142 (239)
||++||.|.... |.++++..-|+|+.+..+++..+.+|.++++.||+++|+.||||+..|++|++..+||||+++|+++
T Consensus 137 ~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~ 216 (347)
T KOG0367|consen 137 CQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALM 216 (347)
T ss_pred hcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHH
Confidence 999999998754 7889999999999999999988999999999999999999999999999999999999999999999
Q ss_pred ccC------ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccC-Ccc
Q 026402 143 QRL------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGL 215 (239)
Q Consensus 143 ~~~------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~-GGf 215 (239)
+++ +..+++++++|+.+.|..+|||.++++++.|.+|.||..++|.+|+....++.+++.+||+.+|.+- |||
T Consensus 217 ~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGF 296 (347)
T KOG0367|consen 217 GKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGF 296 (347)
T ss_pred hhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcc
Confidence 986 2345899999999999999999999999999999999999999999887889999999999999765 999
Q ss_pred CCCCCCCCChhhhhhhhccC
Q 026402 216 NGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 216 ~~~~~k~~D~c~s~~~~~~l 235 (239)
.+.|+..||..|||.+.++|
T Consensus 297 sK~P~~~pD~~HsylG~~al 316 (347)
T KOG0367|consen 297 SKWPEEDPDLLHSYLGLAAL 316 (347)
T ss_pred cCCCccCchHHHHHHHHHHH
Confidence 99999999999999998875
No 20
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=235.22 Aligned_cols=230 Identities=20% Similarity=0.312 Sum_probs=207.5
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (239)
.+++++||..+|.|.|||+.-+++.+.+..||-||.+|-+++..+ .+++++..+||.++.++||||-...+++.++.
T Consensus 122 ~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvR 201 (423)
T KOG0365|consen 122 KENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVR 201 (423)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHH
Confidence 579999999999999999988888899999999999999999753 57999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (239)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~ 162 (239)
+.|+|+.+-.+++-....--+...+||.+||+.+|||++.|..|++..||||++++|.+++..+..+.+++.+|..+.|.
T Consensus 202 s~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm 281 (423)
T KOG0365|consen 202 SAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQM 281 (423)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhh
Confidence 99999998888875443335788999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCCCccCCCCCCCchhhHHHHHHHHHHhCCC-----C-----CCCHHHHHHHHHh-ccccCCccCCCCCCCCChhhhhh
Q 026402 163 -LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-----H-----HVDKDLLGWWLCE-RQVKSGGLNGRPEKLPDVGLLLL 230 (239)
Q Consensus 163 -~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-----~-----~~~~~~~~~~L~~-~Q~~~GGf~~~~~k~~D~c~s~~ 230 (239)
..|||..+.++-.|.+|+||.-+...++... + ..+.+++.+|++. ||.++|||..-|+|+.|.+|+=+
T Consensus 282 ~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCY 361 (423)
T KOG0365|consen 282 RFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCY 361 (423)
T ss_pred hhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhh
Confidence 6899999999999999999998888877531 1 3678999999986 59999999999999999999988
Q ss_pred hhccC
Q 026402 231 VGSFK 235 (239)
Q Consensus 231 ~~~~l 235 (239)
+++.|
T Consensus 362 cLsGL 366 (423)
T KOG0365|consen 362 CLSGL 366 (423)
T ss_pred Hhcch
Confidence 87765
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.98 E-value=4.3e-31 Score=223.48 Aligned_cols=231 Identities=26% Similarity=0.321 Sum_probs=202.2
Q ss_pred ccHHHHHHHHHHcccCCCCccccccc-cchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCC--
Q 026402 4 LAADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH-- 77 (239)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~-- 77 (239)
-.++++++||.+.|++||+|..+... .++++.|++++.+|..++.. .....+++++||.++|++||||......
T Consensus 52 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~ 131 (300)
T cd00688 52 ENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNH 131 (300)
T ss_pred HHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCC
Confidence 46789999999999999999987655 68999999999999999864 2336889999999999999999977553
Q ss_pred -----CCchhHHHHHHHHHHhcCCCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHH
Q 026402 78 -----DPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD 151 (239)
Q Consensus 78 -----~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~ 151 (239)
.+++..|++++.+|..++... ...++++++||.++|++|||| .+..++++..|++++.+|..++......++
T Consensus 132 ~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~ 209 (300)
T cd00688 132 RIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAK 209 (300)
T ss_pred cccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHH
Confidence 678899999999999887643 446899999999999999999 566678999999999999998875456789
Q ss_pred HHHHHHHhccCCCCCccCCC---CCCCchhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHhccccCCccCCCCCCCCChhh
Q 026402 152 KAVEYIVSCKNLDGGFGCTP---GGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGL 227 (239)
Q Consensus 152 ~~~~~l~~~Q~~dGGf~~~~---~~~s~~~~T~~al~aL~~l~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~ 227 (239)
++++||+++|.++|||...+ ...++..+|++++.+|..++.. +....+++++||+++|.++|||...|.+.+|+++
T Consensus 210 ~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~ 289 (300)
T cd00688 210 KALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQH 289 (300)
T ss_pred HHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchh
Confidence 99999999999999998875 6678999999999999988764 4567899999999999999999999999999999
Q ss_pred hhhhhccCC
Q 026402 228 LLLVGSFKL 236 (239)
Q Consensus 228 s~~~~~~l~ 236 (239)
++|++.+|.
T Consensus 290 t~~al~aL~ 298 (300)
T cd00688 290 TVFALLALS 298 (300)
T ss_pred hHHHHHHHh
Confidence 999998874
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.97 E-value=7.3e-29 Score=209.80 Aligned_cols=228 Identities=33% Similarity=0.483 Sum_probs=194.2
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC------CCcCHHHHHHHHHhccCCCCCCCCCCCC-C
Q 026402 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL------DAVDEEDVISWILKCQDESGGFAGNIGH-D 78 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~------~~~~~~~~i~~l~~~q~~dGgf~~~~~~-~ 78 (239)
++++++||++.+.++|+|.... ....++.+++++.++..++.. ....++++++||.++|++||||+..++. .
T Consensus 1 ~~~~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~ 79 (300)
T cd00688 1 IEKHLKYLLRYPYGDGHWYQSL-CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDY 79 (300)
T ss_pred ChhHHHHHHHccccCCCccccC-CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCC
Confidence 3689999999999999874322 246677899999999888752 2347899999999999999999998776 7
Q ss_pred CchhHHHHHHHHHHhcCCC---CCCCHHHHHHHHHhccCCCCCcccCCCC-------CCCcchhHHHHhHHHhhccCC-h
Q 026402 79 PHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWG-------EVDTRFSYIAICCLSILQRLD-K 147 (239)
Q Consensus 79 ~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~~~~-------~~d~~~ty~al~~l~~l~~~~-~ 147 (239)
+++..|++++.+|..++.. ....++++++||.++|++||+|...... ..++..|++++.+|..++... .
T Consensus 80 ~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~ 159 (300)
T cd00688 80 PSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPD 159 (300)
T ss_pred cchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCc
Confidence 9999999999999988753 3345789999999999999999865432 578889999999999888743 5
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCC---CCCCC
Q 026402 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP---EKLPD 224 (239)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~---~k~~D 224 (239)
..++++++||.++|++|||| .++.++++..|++++.+|..++.......+++++||+++|.++|||...+ .+.+|
T Consensus 160 ~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~ 237 (300)
T cd00688 160 PLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237 (300)
T ss_pred HHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCc
Confidence 67899999999999999999 67778999999999999999986545678999999999999999999885 89999
Q ss_pred hhhhhhhhccCC
Q 026402 225 VGLLLLVGSFKL 236 (239)
Q Consensus 225 ~c~s~~~~~~l~ 236 (239)
.|+++|++.+|.
T Consensus 238 ~~~~~~~~~aL~ 249 (300)
T cd00688 238 SCYTEWAAYALL 249 (300)
T ss_pred hHHHHHHHHHHH
Confidence 999999988774
No 23
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.95 E-value=1.9e-26 Score=214.57 Aligned_cols=221 Identities=22% Similarity=0.220 Sum_probs=169.1
Q ss_pred HHHHHHHHHHccc--------------CCCCcccccc--ccchHHHHHHHHHHHHhhCC---C-----CCcCHHHHHHHH
Q 026402 6 ADKHVKYIISVEK--------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGK---L-----DAVDEEDVISWI 61 (239)
Q Consensus 6 ~~~~~~yl~~~q~--------------~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~---~-----~~~~~~~~i~~l 61 (239)
.+|+.+||++.|. ++|||..... ..++...|--++.+|..+.. . +....+++++||
T Consensus 330 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~L 409 (634)
T TIGR03463 330 LERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFI 409 (634)
T ss_pred HHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHH
Confidence 4699999999994 5688875532 23444456667766655332 1 112577899999
Q ss_pred HhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCCCC--------CCHHHHHHHHHhc
Q 026402 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDI--------LDADKVSNYIVGL 112 (239)
Q Consensus 62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~--------~~~~~~~~~l~~~ 112 (239)
+++||+||||+.++. ..+++..|..+|.+|..+..... ..++++++||++.
T Consensus 410 l~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 410 LSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred HHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 999999999996542 34678899999999988754221 1268899999999
Q ss_pred cCCCCCcccCCCCCCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCC----------CCCCCchhhHH
Q 026402 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIF 181 (239)
Q Consensus 113 Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~~~T~ 181 (239)
|++||||.+..+ ...+..|++++.+|..++.. ....++++++||+++|++||||+.. ++.+|++..|+
T Consensus 490 Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA 568 (634)
T TIGR03463 490 QREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTS 568 (634)
T ss_pred cCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHH
Confidence 999999987643 34455688888888887763 4567899999999999999999753 34578999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCC--CCCCChhh
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGL 227 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~--~k~~D~c~ 227 (239)
|||.+|..++..+...++++++||+++|.++|||...+ +-++-.||
T Consensus 569 ~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~ 616 (634)
T TIGR03463 569 WALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAM 616 (634)
T ss_pred HHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCccee
Confidence 99999999987666678999999999999999998765 44666564
No 24
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.94 E-value=3.4e-25 Score=206.01 Aligned_cols=212 Identities=19% Similarity=0.163 Sum_probs=161.7
Q ss_pred HHHHHHHHHHccc-------------CCCCcccccc--ccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccC
Q 026402 6 ADKHVKYIISVEK-------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD 66 (239)
Q Consensus 6 ~~~~~~yl~~~q~-------------~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~----~~~~~~~i~~l~~~q~ 66 (239)
+.|+.+||++.|- ++|||.+... ..+++..|-.++.+|..++..+ ....+++++||+++||
T Consensus 338 l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn 417 (635)
T TIGR01507 338 LVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQS 417 (635)
T ss_pred HHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcC
Confidence 5799999999872 3577765532 2478888999999998875321 2368899999999999
Q ss_pred CCCCCCCCCC-------------------CCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhccCCCCCcccCCCCC
Q 026402 67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE 126 (239)
Q Consensus 67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~ 126 (239)
+||||+.+.. +.|.+..|..++.+|...+.. ....++++++||.+.|++||||.++++ .
T Consensus 418 ~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~ 496 (635)
T TIGR01507 418 SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-V 496 (635)
T ss_pred CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-C
Confidence 9999986532 235667788999999876532 222478999999999999999966543 2
Q ss_pred CCcchhHHHHhHHHhhcc-CChhcHHHHHHHHHhccCCCCCccCC----------CCCCCchhhHHHHHHHHHHhCCCCC
Q 026402 127 VDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCVGALAIAGALHH 195 (239)
Q Consensus 127 ~d~~~ty~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~~~T~~al~aL~~l~~~~~ 195 (239)
.++..|..++.+|...+. .....++++++||+++|++||||++. ..+++++..|.|||.+|..++..+.
T Consensus 497 ~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~ 576 (635)
T TIGR01507 497 NYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAES 576 (635)
T ss_pred ccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence 233334445555555443 23457899999999999999999864 2247899999999999999987666
Q ss_pred CCHHHHHHHHHhccccCCccCCC
Q 026402 196 VDKDLLGWWLCERQVKSGGLNGR 218 (239)
Q Consensus 196 ~~~~~~~~~L~~~Q~~~GGf~~~ 218 (239)
..++++++||.++|+++|||.-.
T Consensus 577 ~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 577 EAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCc
Confidence 67899999999999999999754
No 25
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.92 E-value=2.7e-24 Score=201.23 Aligned_cols=213 Identities=23% Similarity=0.267 Sum_probs=161.8
Q ss_pred cHHHHHHHHHHccc--------------CCCCcccccc--ccchHHHHHHHHHHHHhhCCCC-------CcCHHHHHHHH
Q 026402 5 AADKHVKYIISVEK--------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWI 61 (239)
Q Consensus 5 ~~~~~~~yl~~~q~--------------~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~-------~~~~~~~i~~l 61 (239)
..+++++||++.|. ++|||.+... ..+++..|-.++.+|..++..+ ...++++++||
T Consensus 330 ~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wL 409 (634)
T cd02892 330 ALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWL 409 (634)
T ss_pred HHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHH
Confidence 35799999999995 3567664321 2345556888888888776532 12577899999
Q ss_pred HhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCCCCC-------CHHHHHHHHHhcc
Q 026402 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDIL-------DADKVSNYIVGLQ 113 (239)
Q Consensus 62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~~-------~~~~~~~~l~~~Q 113 (239)
+++|++||||+.+.. ..+++..|.+++.+|..++..... .++++++||.+.|
T Consensus 410 l~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q 489 (634)
T cd02892 410 LGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQ 489 (634)
T ss_pred HhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHcc
Confidence 999999999985421 135667899999999988653321 3789999999999
Q ss_pred CCCCCcccCCCCCCCcchhHHHHhHHHhhccC--ChhcHHHHHHHHHhccCCCCCccCCC----------CCCCchhhHH
Q 026402 114 NEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIF 181 (239)
Q Consensus 114 ~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~s~~~~T~ 181 (239)
++||||.++.+ ...+..|+.++.+|..++.. ....++++++||+++|++||||+..+ +.++++..|.
T Consensus 490 ~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA 568 (634)
T cd02892 490 EPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTA 568 (634)
T ss_pred CCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHH
Confidence 99999976543 23334455677777777653 24578999999999999999998632 3468899999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCC
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR 218 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~ 218 (239)
+||.+|..++..+...++++++||+++|.++|+|.-.
T Consensus 569 ~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~ 605 (634)
T cd02892 569 WALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQE 605 (634)
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCc
Confidence 9999998888765567899999999999999999763
No 26
>PLN03012 Camelliol C synthase
Probab=99.92 E-value=2.2e-24 Score=200.94 Aligned_cols=218 Identities=19% Similarity=0.217 Sum_probs=157.6
Q ss_pred HHHHHHHHHHcccC---------------CCCcccccc--ccchHHHHHHHHHH---HHhhCCC---C---CcCHHHHHH
Q 026402 6 ADKHVKYIISVEKK---------------KDSFESVVM--EHLRLNGAYWGLTT---LDILGKL---D---AVDEEDVIS 59 (239)
Q Consensus 6 ~~~~~~yl~~~q~~---------------dg~~~~~~~--~~~~~~~~y~al~~---l~ll~~~---~---~~~~~~~i~ 59 (239)
..|+.+||++.|.. .|+|..... ..++...|-=++.+ ++++... . .....++++
T Consensus 441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~ 520 (759)
T PLN03012 441 LRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVN 520 (759)
T ss_pred HHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 56899999998863 255543321 22333345544443 4444321 1 125778999
Q ss_pred HHHhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCCC------CC--CHHHHHHHHH
Q 026402 60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DADKVSNYIV 110 (239)
Q Consensus 60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~~~~~~l~ 110 (239)
||+++||+||||+.+.. ..+....|..+|.+|.++.... .+ .++++++||+
T Consensus 521 wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~ 600 (759)
T PLN03012 521 ILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIE 600 (759)
T ss_pred HHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHH
Confidence 99999999999987653 2455667888999988876421 12 3688999999
Q ss_pred hccCCCCCcccCCCCCCCcchhH---HHHhHHHhhccC--ChhcHHHHHHHHHhccCCCCCccCCCC------------C
Q 026402 111 GLQNEDGSFSGDIWGEVDTRFSY---IAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPG------------G 173 (239)
Q Consensus 111 ~~Q~~dGgf~~~~~~~~d~~~ty---~al~~l~~l~~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~------------~ 173 (239)
+.|++||||.++.+ ++++| +++.+|...+.. ....++|+++||++.|++||||++... .
T Consensus 601 ~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~ 676 (759)
T PLN03012 601 NIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGE 676 (759)
T ss_pred HhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCC
Confidence 99999999998765 35544 466666666652 236789999999999999999998642 3
Q ss_pred CCchhhHHHHHHHHHHhCCCC--CCCHHHHHHHHHhccccCCccCCCC--CCCCChhh
Q 026402 174 ESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGL 227 (239)
Q Consensus 174 ~s~~~~T~~al~aL~~l~~~~--~~~~~~~~~~L~~~Q~~~GGf~~~~--~k~~D~c~ 227 (239)
.|++..|+||+.+|...+..+ +..+.|+++||+++|.++|+|.-.. +.++-.||
T Consensus 677 ~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~ 734 (759)
T PLN03012 677 ISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCL 734 (759)
T ss_pred CCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceE
Confidence 589999999999999998743 3468999999999999999987542 44555554
No 27
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.92 E-value=4.4e-24 Score=186.67 Aligned_cols=228 Identities=17% Similarity=0.162 Sum_probs=174.9
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcc--------------CCCC
Q 026402 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQ--------------DESG 69 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q--------------~~dG 69 (239)
+++.++||.+.|++||+|.... +++..|.+++.+|...+.. ....++++++||.+.| .++|
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G 77 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG 77 (348)
T ss_pred CchHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence 4789999999999999998554 7788899999999888863 2346899999999999 6899
Q ss_pred CCCCCCC--CCCchhHHHHHHHHHHhcCCCC-------CCCHHHHHHHHHhccCCCCCcccCCC----------------
Q 026402 70 GFAGNIG--HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIW---------------- 124 (239)
Q Consensus 70 gf~~~~~--~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~~~---------------- 124 (239)
||+.... ..++...|..++.+|..++... ...++++++||.++|++||+|.....
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~ 157 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGD 157 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcC
Confidence 9886432 2355668888888877665432 12368899999999999999974211
Q ss_pred ---CCCCcchhHHHHhHHHhhccCCh-------hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC
Q 026402 125 ---GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH 194 (239)
Q Consensus 125 ---~~~d~~~ty~al~~l~~l~~~~~-------~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~ 194 (239)
..+++..|..++.+|..++.... ..++++++||+++|++||||.... ..++.+.|++++.+|..++...
T Consensus 158 ~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~ 236 (348)
T cd02889 158 IMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDE 236 (348)
T ss_pred CccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCc
Confidence 12345557777888777775422 357899999999999999996433 2356778889999998888632
Q ss_pred -CCCHHHHHHHHHhccccCCccCCC----------CCCCCChhhhhhhhccCCC
Q 026402 195 -HVDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFKLD 237 (239)
Q Consensus 195 -~~~~~~~~~~L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l~~ 237 (239)
...++++++||+++|.++|||... +...+|++.+.|++-+|+.
T Consensus 237 ~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~ 290 (348)
T cd02889 237 NSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMA 290 (348)
T ss_pred CcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHh
Confidence 345789999999999999999863 3457899999999988764
No 28
>PLN02993 lupeol synthase
Probab=99.92 E-value=3.9e-24 Score=199.58 Aligned_cols=221 Identities=18% Similarity=0.204 Sum_probs=162.1
Q ss_pred HHHHHHHHHHcccC---------------CCCcccccc--ccchHHHHHHHHH---HHHhhCCC---C---CcCHHHHHH
Q 026402 6 ADKHVKYIISVEKK---------------KDSFESVVM--EHLRLNGAYWGLT---TLDILGKL---D---AVDEEDVIS 59 (239)
Q Consensus 6 ~~~~~~yl~~~q~~---------------dg~~~~~~~--~~~~~~~~y~al~---~l~ll~~~---~---~~~~~~~i~ 59 (239)
.+|+.+||++.|-. .|||.+... ..++...|-=++. .|..+... . .....++++
T Consensus 441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~ 520 (763)
T PLN02993 441 LRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVN 520 (763)
T ss_pred HHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHH
Confidence 56899999988862 366654422 2344444555554 44433311 1 124778999
Q ss_pred HHHhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCC-C-----C--CCHHHHHHHHH
Q 026402 60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D-----I--LDADKVSNYIV 110 (239)
Q Consensus 60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~-----~--~~~~~~~~~l~ 110 (239)
||+++||+||||+.+.. ..+.+..|..+|.+|..++.. . . ..++++++||+
T Consensus 521 wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~ 600 (763)
T PLN02993 521 LLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIE 600 (763)
T ss_pred HHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHH
Confidence 99999999999998752 256778999999999988642 1 1 13689999999
Q ss_pred hccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC--hhcHHHHHHHHHhccCCCCCccCCC------------CCCCc
Q 026402 111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP------------GGESH 176 (239)
Q Consensus 111 ~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~------------~~~s~ 176 (239)
+.|++||||.++.+ ...+..|++++.+|...+... ...++|+++||+++|++||||++.. +..|+
T Consensus 601 ~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St 679 (763)
T PLN02993 601 SKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSN 679 (763)
T ss_pred HhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCc
Confidence 99999999998643 334445667788887777642 2578999999999999999998752 23588
Q ss_pred hhhHHHHHHHHHHhCCCCC--CCHHHHHHHHHhccccCCccCCC--CCCCCChhh
Q 026402 177 SGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVGL 227 (239)
Q Consensus 177 ~~~T~~al~aL~~l~~~~~--~~~~~~~~~L~~~Q~~~GGf~~~--~~k~~D~c~ 227 (239)
++.|.||+.+|...|..+. ..++|+++||.++|.++|+|--. .+-++-.||
T Consensus 680 ~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~ 734 (763)
T PLN02993 680 LVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM 734 (763)
T ss_pred hhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence 9999999999999886432 35899999999999999998754 344666666
No 29
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.91 E-value=2.1e-23 Score=182.40 Aligned_cols=212 Identities=24% Similarity=0.259 Sum_probs=157.9
Q ss_pred cHHHHHHHHHHcc--------------cCCCCccccccc--cchHHHHHHHHHHHHhhCCCC-------CcCHHHHHHHH
Q 026402 5 AADKHVKYIISVE--------------KKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWI 61 (239)
Q Consensus 5 ~~~~~~~yl~~~q--------------~~dg~~~~~~~~--~~~~~~~y~al~~l~ll~~~~-------~~~~~~~i~~l 61 (239)
..+|+++||.+.| .++|+|...... .++...|-+++.+|..++... ...++++++||
T Consensus 47 ~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L 126 (348)
T cd02889 47 ALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWL 126 (348)
T ss_pred HHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHH
Confidence 3579999999999 688888754221 233334666666666665431 22578899999
Q ss_pred HhccCCCCCCCCCCC-------------------CCCchhHHHHHHHHHHhcCCCCC-------CCHHHHHHHHHhccCC
Q 026402 62 LKCQDESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVDI-------LDADKVSNYIVGLQNE 115 (239)
Q Consensus 62 ~~~q~~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~~-------~~~~~~~~~l~~~Q~~ 115 (239)
+++|++||||..+.. ..+++..|..++.+|..++.... ..++++++||.+.|++
T Consensus 127 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~ 206 (348)
T cd02889 127 LSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEP 206 (348)
T ss_pred HHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999985422 23567789999999888765322 1367899999999999
Q ss_pred CCCcccCCCCCCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCC----------CCCCCchhhHHHHH
Q 026402 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCV 184 (239)
Q Consensus 116 dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~~~T~~al 184 (239)
||+|.+... ......|+.++.+|..++.. ....++++++||+++|++||||+.. +...++...|.++|
T Consensus 207 dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al 285 (348)
T cd02889 207 DGSWYGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWAL 285 (348)
T ss_pred CCCccccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHH
Confidence 999975432 22333455566666666652 3457899999999999999999863 23467889999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402 185 GALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (239)
Q Consensus 185 ~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 217 (239)
.+|...+..+...++++++||.++|+++|||..
T Consensus 286 ~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~ 318 (348)
T cd02889 286 LALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ 318 (348)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence 999888765556689999999999999999986
No 30
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.91 E-value=2.5e-23 Score=193.45 Aligned_cols=221 Identities=21% Similarity=0.187 Sum_probs=159.0
Q ss_pred HHHHHHHHHHcccCC---------------CCcccccc--ccchHHHHHHHHHHHHhhCCC-C---CcCHHHHHHHHHhc
Q 026402 6 ADKHVKYIISVEKKK---------------DSFESVVM--EHLRLNGAYWGLTTLDILGKL-D---AVDEEDVISWILKC 64 (239)
Q Consensus 6 ~~~~~~yl~~~q~~d---------------g~~~~~~~--~~~~~~~~y~al~~l~ll~~~-~---~~~~~~~i~~l~~~ 64 (239)
+.|+.+||++.|..+ |+|.+... ..+++..|-.++.++.++... . ....+++++||+++
T Consensus 321 i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~ 400 (621)
T TIGR01787 321 LVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGM 400 (621)
T ss_pred HHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHH
Confidence 579999999999865 66653321 224565566665555444432 1 12467899999999
Q ss_pred cCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCC-C--CCCHHHHHHHHHhccCCCCCcc
Q 026402 65 QDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D--ILDADKVSNYIVGLQNEDGSFS 120 (239)
Q Consensus 65 q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~--~~~~~~~~~~l~~~Q~~dGgf~ 120 (239)
||+||||+.++. ..+.+..|..++.+|...+.. + ...++++++||.+.|++||+|.
T Consensus 401 Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~ 480 (621)
T TIGR01787 401 QSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWF 480 (621)
T ss_pred cCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCc
Confidence 999999986531 123446899999999877531 1 1247899999999999999998
Q ss_pred cCCCCCCCcchhHHHHhHHHhhccCC--hhcHHHHHHHHHhccCCCCCccCCC----------CCCCchhhHHHHHHHHH
Q 026402 121 GDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALA 188 (239)
Q Consensus 121 ~~~~~~~d~~~ty~al~~l~~l~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~s~~~~T~~al~aL~ 188 (239)
++.+ ...+..|..++.+|..++... ...++++++||+++|++||||+... ..+|++..|.|||.+|.
T Consensus 481 g~wg-~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~ 559 (621)
T TIGR01787 481 GRWG-VNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI 559 (621)
T ss_pred ccCC-CCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 7543 223333555666676666532 2568999999999999999998642 23689999999999998
Q ss_pred HhCCCCCCCHHHHHHHHHhccccCCccCCCC--CC-CCChhh
Q 026402 189 IAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EK-LPDVGL 227 (239)
Q Consensus 189 ~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~--~k-~~D~c~ 227 (239)
.++..+...++++++||.++|.++|||...+ +. .|-.||
T Consensus 560 ~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~ 601 (621)
T TIGR01787 560 AAGEADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFY 601 (621)
T ss_pred HcCccchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccce
Confidence 8886555568999999999999999997643 33 335565
No 31
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.87 E-value=2e-22 Score=148.34 Aligned_cols=109 Identities=34% Similarity=0.618 Sum_probs=91.5
Q ss_pred HHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCCHHHH--HHHHHhccCCCCCcccCCC-CCCCcchhHH
Q 026402 58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV--SNYIVGLQNEDGSFSGDIW-GEVDTRFSYI 134 (239)
Q Consensus 58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~--~~~l~~~Q~~dGgf~~~~~-~~~d~~~ty~ 134 (239)
|+||+++|++||||+.. +..+++..|+.|+.+|..++... +++++ ++||.++|++||||...+. .++|+..|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999988 77899999999999999987643 47888 9999999999999999884 4678999999
Q ss_pred HHhHHHhhccCCh-hcHHHHHHHHHhccCCCCCccC
Q 026402 135 AICCLSILQRLDK-INVDKAVEYIVSCKNLDGGFGC 169 (239)
Q Consensus 135 al~~l~~l~~~~~-~~~~~~~~~l~~~Q~~dGGf~~ 169 (239)
++++|.+++.... ..++++++||+++|++||||++
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999987543 6789999999999999999975
No 32
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.86 E-value=2.4e-20 Score=173.86 Aligned_cols=229 Identities=15% Similarity=0.110 Sum_probs=162.2
Q ss_pred HHHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCC-C--cCHHHHHHHHHhccC--------------
Q 026402 6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-A--VDEEDVISWILKCQD-------------- 66 (239)
Q Consensus 6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~--~~~~~~i~~l~~~q~-------------- 66 (239)
..+|+++|.+..- ++|+...... .+..|.|-+++.+|.-.+..+ + ...+++.+||++.|.
T Consensus 278 ~~k~l~~l~~~~~~~~~~g~~~q~~-~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~ 356 (634)
T TIGR03463 278 VAAHLEGLEDYRYEDDDRGLRYNGY-NSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP 356 (634)
T ss_pred HHHHHHHHHhhEEEcCCCCEEEeeC-CCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence 5789999988774 4433222221 234488899998887666422 1 246889999999994
Q ss_pred CCCCCCCCC--CCCCchhHHHHHHHHHHhcCCC--------CCCCHHHHHHHHHhccCCCCCcccCCC------------
Q 026402 67 ESGGFAGNI--GHDPHVLYTLSAVQVLALFDKV--------DILDADKVSNYIVGLQNEDGSFSGDIW------------ 124 (239)
Q Consensus 67 ~dGgf~~~~--~~~~~~~~T~~al~~L~~l~~~--------~~~~~~~~~~~l~~~Q~~dGgf~~~~~------------ 124 (239)
+.|||+... ...++...|..+|.+|..+... ....++++++||.++|++||||+....
T Consensus 357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~ 436 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP 436 (634)
T ss_pred CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence 579988774 4567788898888887664321 112357899999999999999983210
Q ss_pred ---------CCCCcchhHHHHhHHHhhccCC--------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHH
Q 026402 125 ---------GEVDTRFSYIAICCLSILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL 187 (239)
Q Consensus 125 ---------~~~d~~~ty~al~~l~~l~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL 187 (239)
..+.+--|-.++.+|..++... ...++++++||++.|++||||....+ ....+.|++++.+|
T Consensus 437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL 515 (634)
T TIGR03463 437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL 515 (634)
T ss_pred HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence 0112233444555555554322 12478999999999999999976544 35667899999999
Q ss_pred HHhCCC-CCCCHHHHHHHHHhccccCCccCCC----------CCCCCChhhhhhhhccCC
Q 026402 188 AIAGAL-HHVDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 188 ~~l~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l~ 236 (239)
..++.. +...++++++||+++|+++|||+.. ++..+....|.|++.+|.
T Consensus 516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~ 575 (634)
T TIGR03463 516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALA 575 (634)
T ss_pred HHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHH
Confidence 988863 3455899999999999999999763 334677888999988874
No 33
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.84 E-value=1.1e-19 Score=170.16 Aligned_cols=229 Identities=16% Similarity=0.127 Sum_probs=167.9
Q ss_pred HHHHHHHHHHcc--cCCCCccccccccchHHHHHHHHHHHHhhCCCC--CcCHHHHHHHHHhccC--------------C
Q 026402 6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD--AVDEEDVISWILKCQD--------------E 67 (239)
Q Consensus 6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~--~~~~~~~i~~l~~~q~--------------~ 67 (239)
..+|+++|.+.. .+||++.. ....+.+|.|-+++.+|.-.|..+ ....+++++||++.|. +
T Consensus 280 ~~~~l~~l~~~~~~~~~g~~~~-~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~ 358 (634)
T cd02892 280 FKRHLERIDDFLWLGPEGMKMC-QTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR 358 (634)
T ss_pred HHHHHHHHHhcEEEecCCcEEE-cCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC
Confidence 468888888866 46776533 223467899999999997777542 2357899999999995 4
Q ss_pred CCCCCCC--CCCCCchhHHHHHHHHHHhcCCCC----CC---CHHHHHHHHHhccCCCCCcccC-CCC------------
Q 026402 68 SGGFAGN--IGHDPHVLYTLSAVQVLALFDKVD----IL---DADKVSNYIVGLQNEDGSFSGD-IWG------------ 125 (239)
Q Consensus 68 dGgf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~---~~~~~~~~l~~~Q~~dGgf~~~-~~~------------ 125 (239)
.|||+.. +...|++..|..++.+|..+.... .+ .++++++||.++|++||||... +..
T Consensus 359 ~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e 438 (634)
T cd02892 359 KGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFE 438 (634)
T ss_pred CCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchh
Confidence 6777754 234577788988888887776432 12 3678999999999999999742 110
Q ss_pred --------CCCcchhHHHHhHHHhhccCCh-------hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHh
Q 026402 126 --------EVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (239)
Q Consensus 126 --------~~d~~~ty~al~~l~~l~~~~~-------~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l 190 (239)
.+.+..|..++.+|..++...+ ..++++++||+++|++||||.... .....+.|++++.+|..+
T Consensus 439 ~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~ 517 (634)
T cd02892 439 DFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAA 517 (634)
T ss_pred hhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHh
Confidence 1233457778888887765432 357899999999999999996543 346677899999999998
Q ss_pred CCC--CCCCHHHHHHHHHhccccCCccCCCC----------CCCCChhhhhhhhccCC
Q 026402 191 GAL--HHVDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 191 ~~~--~~~~~~~~~~~L~~~Q~~~GGf~~~~----------~k~~D~c~s~~~~~~l~ 236 (239)
+.. ....++++++||+++|+++|||...+ ...+++..|.|++-+|+
T Consensus 518 G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl 575 (634)
T cd02892 518 GEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALM 575 (634)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHH
Confidence 864 23467999999999999999997532 23566788888877764
No 34
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.84 E-value=4.9e-21 Score=140.93 Aligned_cols=108 Identities=29% Similarity=0.450 Sum_probs=90.6
Q ss_pred HHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHH--HHHHHhccCCCCCccCCC-CCCCchhhHHH
Q 026402 106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA--VEYIVSCKNLDGGFGCTP-GGESHSGQIFC 182 (239)
Q Consensus 106 ~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~--~~~l~~~Q~~dGGf~~~~-~~~s~~~~T~~ 182 (239)
++||.++|++||||... ..++++..|+.++.+|..++... +.+++ ++||.++|++||||+..+ +.+++..+|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 66788999999999999988744 47788 999999999999999998 46789999999
Q ss_pred HHHHHHHhCCCCC-CCHHHHHHHHHhccccCCccC
Q 026402 183 CVGALAIAGALHH-VDKDLLGWWLCERQVKSGGLN 216 (239)
Q Consensus 183 al~aL~~l~~~~~-~~~~~~~~~L~~~Q~~~GGf~ 216 (239)
++++|.+++..+. ..++++++||+++|+++|||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999987543 668999999999999999997
No 35
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.84 E-value=2.9e-19 Score=166.48 Aligned_cols=229 Identities=17% Similarity=0.066 Sum_probs=164.0
Q ss_pred HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccC-------------CCCC
Q 026402 6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQD-------------ESGG 70 (239)
Q Consensus 6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~-------------~dGg 70 (239)
+.+|+++|++..- .+|++..... .+.+|.|.+++.+|...|... ....+++.+||+++|- +.||
T Consensus 289 ~~~~l~~l~~~~~~~~~g~~~~~~-~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GG 367 (635)
T TIGR01507 289 IKLGWEGIDLYGVELDDSWMFQAC-VSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGG 367 (635)
T ss_pred HHHHHHHHHHheEecCCceEecCC-CCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCc
Confidence 5678999877554 4465543332 468899999999998888532 2357899999999973 3688
Q ss_pred CCCC--CCCCCchhHHHHHHHHHHhcCCCC----CCCHHHHHHHHHhccCCCCCcccCC------------CC-------
Q 026402 71 FAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDI------------WG------- 125 (239)
Q Consensus 71 f~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGgf~~~~------------~~------- 125 (239)
|+.. +...|++..|..++.+|..++..+ ...++++++||.++|++||||.... .+
T Consensus 368 W~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D 447 (635)
T TIGR01507 368 WAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTD 447 (635)
T ss_pred cCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccC
Confidence 8876 334689999999999998764211 1247899999999999999996411 10
Q ss_pred CCCcchhHHHHhHHHhhcc-CChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCC-CCCCHHHHHH
Q 026402 126 EVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGW 203 (239)
Q Consensus 126 ~~d~~~ty~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-~~~~~~~~~~ 203 (239)
.+++--|-.++.+|...+. .....++++++||++.|++||||-...+ ..+.+.|..++.+|+..+.. ....++++++
T Consensus 448 ~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~ 526 (635)
T TIGR01507 448 PPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALA 526 (635)
T ss_pred CCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 1222224445555554443 2245689999999999999999844433 45677888899999887752 2345899999
Q ss_pred HHHhccccCCccCCC----------CCCCCChhhhhhhhccCC
Q 026402 204 WLCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 204 ~L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l~ 236 (239)
||+++|+++|||+.. +....|+--|.|++-+|.
T Consensus 527 wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~ 569 (635)
T TIGR01507 527 WLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALI 569 (635)
T ss_pred HHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHH
Confidence 999999999999843 112578888999988774
No 36
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.83 E-value=8e-20 Score=144.24 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=165.3
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHh-ccCCCCCCCCC-------
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK-CQDESGGFAGN------- 74 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~-~q~~dGgf~~~------- 74 (239)
.+|.++.+.||.+.|+.||||+....-+..+..||||+.++.+||.+++ .++++++||.+ +|..-+|+...
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~evP-r~EktiefL~d~~qt~~~~~a~~~~~l~~l 83 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEVP-RKEKTIEFLYDQMQTAGVGVAMAIEFLRIL 83 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcCc-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5789999999999999999999776545557889999999999998765 78999999988 34443343310
Q ss_pred ---------------------------------CCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCccc
Q 026402 75 ---------------------------------IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG 121 (239)
Q Consensus 75 ---------------------------------~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~ 121 (239)
.++..-+..||+.+.+|.+.+.. ..+...+|+.+-|+++|++.+
T Consensus 84 g~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~ 160 (274)
T COG1689 84 GAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDA 160 (274)
T ss_pred cccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccc
Confidence 01122356888888888877631 246788899999999877765
Q ss_pred CCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCC-CCchhhHHHHHHHHHHhCCCCCCCHHH
Q 026402 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDL 200 (239)
Q Consensus 122 ~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~-~s~~~~T~~al~aL~~l~~~~~~~~~~ 200 (239)
.--.-+.+..||.|+-+|... ...+....|=..|- .+|||...|+. +|-...||+|+..|.+|++. .-+.+
T Consensus 161 YGv~~pnt~~t~~aly~l~~k-----~~~~~v~~Fe~~c~-~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~ 232 (274)
T COG1689 161 YGVTHPNTTMTYQALYTLGSK-----GPKEEVRHFELCCG-DWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISD 232 (274)
T ss_pred cccCCcchHHHHHHHHhhccc-----cchHHHHhHHhccc-cCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchH
Confidence 433345667777665544432 24566677776665 48999999986 67788999999999999975 44678
Q ss_pred HHHHHHhccccCCccCCCC-CCCCChhhhhhhhccC
Q 026402 201 LGWWLCERQVKSGGLNGRP-EKLPDVGLLLLVGSFK 235 (239)
Q Consensus 201 ~~~~L~~~Q~~~GGf~~~~-~k~~D~c~s~~~~~~l 235 (239)
.++|+.+.|+++|||+... .-+.-.-+||-.+++|
T Consensus 233 ~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L 268 (274)
T COG1689 233 HIRFIRSLQNQNGGFRRSYELGISTFENTYRALASL 268 (274)
T ss_pred HHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHH
Confidence 9999999999999999875 4466667777766655
No 37
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.81 E-value=1.4e-18 Score=161.79 Aligned_cols=228 Identities=18% Similarity=0.140 Sum_probs=160.7
Q ss_pred HHHHHHHHHHc--ccCCCCccccccccchHHHHHHHHHHHHhhCC--CC--CcCHHHHHHHHHhccCCC-----------
Q 026402 6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGK--LD--AVDEEDVISWILKCQDES----------- 68 (239)
Q Consensus 6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~--~~--~~~~~~~i~~l~~~q~~d----------- 68 (239)
..+|++.|++. ..+||.+... -.+.+|.|-+++.+|.-.|. .+ ....+++++||++.|..+
T Consensus 269 ~~~~l~~l~~~~~~~~dg~~~q~--~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~ 346 (621)
T TIGR01787 269 FQKHLQRIDDYLWLQLDGMKMQG--TGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRH 346 (621)
T ss_pred HHHHHHHHhhcEEEeCCccEEec--CCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCC
Confidence 46788888776 4577655311 14678999999999976663 22 235789999999999866
Q ss_pred ----CCCCCCC--CCCCchhHHHHHHHHHHhcCC-CCC---CCHHHHHHHHHhccCCCCCcccC-------------C--
Q 026402 69 ----GGFAGNI--GHDPHVLYTLSAVQVLALFDK-VDI---LDADKVSNYIVGLQNEDGSFSGD-------------I-- 123 (239)
Q Consensus 69 ----Ggf~~~~--~~~~~~~~T~~al~~L~~l~~-~~~---~~~~~~~~~l~~~Q~~dGgf~~~-------------~-- 123 (239)
|||+... ...|++..|..++.++.++.. ... ..++++++||.++|++||||... |
T Consensus 347 ~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e 426 (621)
T TIGR01787 347 NLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSE 426 (621)
T ss_pred CCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchh
Confidence 7776542 345677777777655444322 112 23578999999999999999742 1
Q ss_pred -CC-----CCCcchhHHHHhHHHhhccC---ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC
Q 026402 124 -WG-----EVDTRFSYIAICCLSILQRL---DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH 194 (239)
Q Consensus 124 -~~-----~~d~~~ty~al~~l~~l~~~---~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~ 194 (239)
.. .+.+..|..++.+|..++.. ....++++++||+++|++||+|..+.+. ...+.|.+++.+|..++...
T Consensus 427 ~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~ 505 (621)
T TIGR01787 427 VFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTY 505 (621)
T ss_pred hhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcc
Confidence 00 11123466677777666531 1346899999999999999999765443 44566889999999888642
Q ss_pred --CCCHHHHHHHHHhccccCCccCCCC----------CCCCChhhhhhhhccCC
Q 026402 195 --HVDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 195 --~~~~~~~~~~L~~~Q~~~GGf~~~~----------~k~~D~c~s~~~~~~l~ 236 (239)
...++++++||+++|+++|||+... ...+|+..+.|++.+|.
T Consensus 506 ~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~ 559 (621)
T TIGR01787 506 RNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI 559 (621)
T ss_pred cCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 2458999999999999999998542 23578999999998875
No 38
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.80 E-value=3.9e-18 Score=146.24 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=143.5
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCCCCC------
Q 026402 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIG------ 76 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~------ 76 (239)
+++.++.+.+.|++||+|..|...+..+|.|.+++.+|...+... +...+++++||.+.|++||+|.....
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 345666667889999999988877889999999999998887532 22577899999999999999996521
Q ss_pred ------CCCchhHHHHHHHHHHhcCCCC-------CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhc
Q 026402 77 ------HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (239)
Q Consensus 77 ------~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~ 143 (239)
.++++..|.+++.+|...+... ...++++++||.+.+.+- .++..+..+.-+|.+.+
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~----------~~~Y~~Al~ayALal~~ 203 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPNL----------QRPYALAITAYALALAD 203 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcccC----------CChHHHHHHHHHHHHcC
Confidence 1356778889988887765422 124689999999987541 11111222223334443
Q ss_pred cCChhcHHHHHHHHHhccCCCCCccCCC---------C--CCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccC
Q 026402 144 RLDKINVDKAVEYIVSCKNLDGGFGCTP---------G--GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS 212 (239)
Q Consensus 144 ~~~~~~~~~~~~~l~~~Q~~dGGf~~~~---------~--~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~ 212 (239)
. ...+++.++|+++|+.|||+++.. . ...++..|.|||.++...+ +.....+.++||.+.|+..
T Consensus 204 ~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~--~~~~a~~iv~WL~~qr~~~ 278 (297)
T cd02896 204 S---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLG--DIEYANPIARWLTEQRNYG 278 (297)
T ss_pred C---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcC--CchhHHHHHHHHHhcCCCC
Confidence 3 367889999999999999987521 1 2237889999997776665 3446788999999999999
Q ss_pred CccCC
Q 026402 213 GGLNG 217 (239)
Q Consensus 213 GGf~~ 217 (239)
|||..
T Consensus 279 Ggf~s 283 (297)
T cd02896 279 GGFGS 283 (297)
T ss_pred CCeeh
Confidence 99973
No 39
>PLN03012 Camelliol C synthase
Probab=99.78 E-value=3.8e-18 Score=159.43 Aligned_cols=165 Identities=17% Similarity=0.150 Sum_probs=127.4
Q ss_pred cHHHHHHHHHHcccCCCCcccccc---------------------ccchHHHHHHHHHHHHhhCCCC--------CcCHH
Q 026402 5 AADKHVKYIISVEKKKDSFESVVM---------------------EHLRLNGAYWGLTTLDILGKLD--------AVDEE 55 (239)
Q Consensus 5 ~~~~~~~yl~~~q~~dg~~~~~~~---------------------~~~~~~~~y~al~~l~ll~~~~--------~~~~~ 55 (239)
...++++||.++|++||||..+.. +++-...|--+|.+|.+++... ...++
T Consensus 514 ~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~ 593 (759)
T PLN03012 514 QLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIK 593 (759)
T ss_pred HHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHH
Confidence 356899999999999999853321 2333334666788888876521 12477
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCC--CCCHHHHHHHHHhccCCCCCcccCCC---------
Q 026402 56 DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIW--------- 124 (239)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~Q~~dGgf~~~~~--------- 124 (239)
++++||++.|++||||.+..+. ..+..|.+||.+|...+... ...++++++||++.|++||||+++..
T Consensus 594 rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~ 672 (759)
T PLN03012 594 KAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA 672 (759)
T ss_pred HHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence 8999999999999999987653 44568999999998877532 23489999999999999999997532
Q ss_pred ---CCCCcchhHHHHhHHHhhccCC--hhcHHHHHHHHHhccCCCCCccCC
Q 026402 125 ---GEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCT 170 (239)
Q Consensus 125 ---~~~d~~~ty~al~~l~~l~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~ 170 (239)
+.+.+..|.||+.+|...+... +..++|+++||++.|.+||+|-..
T Consensus 673 ~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~ 723 (759)
T PLN03012 673 QEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQ 723 (759)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCc
Confidence 2366778999999998888643 346899999999999999999653
No 40
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.77 E-value=5.1e-17 Score=139.06 Aligned_cols=199 Identities=13% Similarity=0.085 Sum_probs=138.5
Q ss_pred HHHHHHHHH-------HcccCCCCccccccc--cchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCC
Q 026402 6 ADKHVKYII-------SVEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG 73 (239)
Q Consensus 6 ~~~~~~yl~-------~~q~~dg~~~~~~~~--~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~ 73 (239)
++++.+||+ +.|++||+|..|+.. ++.+|.|.+++.+|...+... ...++++++||.+.|++||||..
T Consensus 44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 356666666 579999999988654 678999999999998877422 23588899999999999999986
Q ss_pred CC---------CCCCchhHHHHHHHHHHhcCCCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhc
Q 026402 74 NI---------GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (239)
Q Consensus 74 ~~---------~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~ 143 (239)
.. +..+.+..|.+++.+|...+... ...++++++||.+.+.+ ..++..+..+..+|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~ 193 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAG 193 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcC
Confidence 42 12345678899999888776532 22368999999998764 112333333445555555
Q ss_pred cCChhcHHHHHHHHHh---ccCCCCCccCC----------C-CCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcc
Q 026402 144 RLDKINVDKAVEYIVS---CKNLDGGFGCT----------P-GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ 209 (239)
Q Consensus 144 ~~~~~~~~~~~~~l~~---~Q~~dGGf~~~----------~-~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q 209 (239)
. ...+++++.+.+ .++.+|+|+.. + +..+++..|.|+|.+|...+..+.....+.++||.+.|
T Consensus 194 ~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q 270 (292)
T cd02897 194 S---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQR 270 (292)
T ss_pred C---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcC
Confidence 2 224455555544 44556777642 1 12468889999998887776322344677899999999
Q ss_pred ccCCccCC
Q 026402 210 VKSGGLNG 217 (239)
Q Consensus 210 ~~~GGf~~ 217 (239)
+++|||..
T Consensus 271 ~~~Ggf~s 278 (292)
T cd02897 271 NSLGGFSS 278 (292)
T ss_pred CCCCCccc
Confidence 99999974
No 41
>PLN02993 lupeol synthase
Probab=99.75 E-value=4.5e-17 Score=152.55 Aligned_cols=206 Identities=17% Similarity=0.097 Sum_probs=147.3
Q ss_pred cchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccCC---------------CCCCCCC--CCCCCchhHHHHHHHH
Q 026402 30 HLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDE---------------SGGFAGN--IGHDPHVLYTLSAVQV 90 (239)
Q Consensus 30 ~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~~---------------dGgf~~~--~~~~~~~~~T~~al~~ 90 (239)
.+.+|.|-+++.+|.--|.. .....+++.+||++.|-. .|||+.. ....|+...|..++.+
T Consensus 415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka 494 (763)
T PLN02993 415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC 494 (763)
T ss_pred CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence 47899999999999887753 233688999999998862 2887765 3467888899888875
Q ss_pred HHhcCCCC------CC---CHHHHHHHHHhccCCCCCcccC------------C------CCCCCcchhHH---HHhHHH
Q 026402 91 LALFDKVD------IL---DADKVSNYIVGLQNEDGSFSGD------------I------WGEVDTRFSYI---AICCLS 140 (239)
Q Consensus 91 L~~l~~~~------~~---~~~~~~~~l~~~Q~~dGgf~~~------------~------~~~~d~~~ty~---al~~l~ 140 (239)
+.++.... .+ ...++++||.++|++||||+.- | +-..|..+.+| ++.+|.
T Consensus 495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 54443221 12 2578999999999999998742 1 00123344455 444444
Q ss_pred hhccCC--------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCC--CCHHHHHHHHHhccc
Q 026402 141 ILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQV 210 (239)
Q Consensus 141 ~l~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~--~~~~~~~~~L~~~Q~ 210 (239)
+++... ...++++++||++.|++||||..+.+ ....+.|++||.+|..+|.... ..++++++||+++|+
T Consensus 575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~ 653 (763)
T PLN02993 575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR 653 (763)
T ss_pred HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 444311 24678999999999999999987543 4677789999999998887432 458999999999999
Q ss_pred cCCccCCCC------------CCCCChhhhhhhhccCC
Q 026402 211 KSGGLNGRP------------EKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 211 ~~GGf~~~~------------~k~~D~c~s~~~~~~l~ 236 (239)
++|||+... +..+-+.-+.|++-+|.
T Consensus 654 ~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~ 691 (763)
T PLN02993 654 DDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLI 691 (763)
T ss_pred CCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHH
Confidence 999998642 12344577777766553
No 42
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.62 E-value=1.3e-14 Score=114.90 Aligned_cols=151 Identities=18% Similarity=0.201 Sum_probs=123.8
Q ss_pred cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 026402 30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI 109 (239)
Q Consensus 30 ~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l 109 (239)
+..+..+||+..+|.+.+... .+++-+|+++.|+++|++...-...|++..||.|+.+|.... .++....|=
T Consensus 120 ~~~Le~ty~~~~~l~~~n~~~---~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe 191 (274)
T COG1689 120 ATPLEATYWMMSALNMVNYEY---LEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFE 191 (274)
T ss_pred CchHHHHHHHHHHHHHhCcCc---hHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhcccc-----chHHHHhHH
Confidence 456888999999999999754 578888999999999888887777888899998888876433 345555554
Q ss_pred HhccCCCCCcccCCCC-CCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCC-CCCCchhhHHHHHHHH
Q 026402 110 VGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTP-GGESHSGQIFCCVGAL 187 (239)
Q Consensus 110 ~~~Q~~dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~-~~~s~~~~T~~al~aL 187 (239)
.. --.+|||...|++ ++.+..||.++.+|.+|+.. ..+.+.++||++.||+||||+.+. .+-|....||+|++.|
T Consensus 192 ~~-c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L 268 (274)
T COG1689 192 LC-CGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASL 268 (274)
T ss_pred hc-cccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHH
Confidence 44 4567999999987 66788999999999999874 457889999999999999998765 4679999999999999
Q ss_pred HHhC
Q 026402 188 AIAG 191 (239)
Q Consensus 188 ~~l~ 191 (239)
+.+.
T Consensus 269 ~~l~ 272 (274)
T COG1689 269 ASLH 272 (274)
T ss_pred HHHh
Confidence 8774
No 43
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.61 E-value=2.4e-14 Score=129.96 Aligned_cols=159 Identities=28% Similarity=0.328 Sum_probs=125.0
Q ss_pred HHHHHHHhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCCC------CC--CHHHHH
Q 026402 56 DVISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DADKVS 106 (239)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~~~~ 106 (239)
.+++.|+..|..+|||....- .++.+..|-+++++|......- .+ .+++++
T Consensus 516 dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av 595 (760)
T KOG0497|consen 516 DAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAV 595 (760)
T ss_pred HHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHH
Confidence 477789999999999986531 1345678889999998775421 11 268899
Q ss_pred HHHHhccCCCCCcccCCCCCCCcchhHHHHhHH---HhhccC--ChhcHHHHHHHHHhccCCCCCccCCCC---------
Q 026402 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCL---SILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPG--------- 172 (239)
Q Consensus 107 ~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l---~~l~~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~--------- 172 (239)
+||++.|.+||+|.++++ +|+||.+..++ ...|+. .-..++++++||++.|++||||++.+-
T Consensus 596 ~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~ 671 (760)
T KOG0497|consen 596 EFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIP 671 (760)
T ss_pred HHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccc
Confidence 999999999999999875 78888755544 334432 235689999999999999999998742
Q ss_pred ---CCCchhhHHHHHHHHHHhCCCC--CCCHHHHHHHHHhccccCCccCCC
Q 026402 173 ---GESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNGR 218 (239)
Q Consensus 173 ---~~s~~~~T~~al~aL~~l~~~~--~~~~~~~~~~L~~~Q~~~GGf~~~ 218 (239)
..++...|.||+.+|.+.++.+ +.++.|++..|.+.|.++|-|.-.
T Consensus 672 ~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq 722 (760)
T KOG0497|consen 672 LEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ 722 (760)
T ss_pred cccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence 2477889999999999999854 457899999999999999988744
No 44
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.52 E-value=3.3e-13 Score=115.78 Aligned_cols=171 Identities=18% Similarity=0.087 Sum_probs=123.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHhccCCCCCcccCC-------
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDI------- 123 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~------- 123 (239)
++++++.++++|++||||+.+....++++.|.+++.+|........++ ++++++||.+.|++||+|....
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 566777888999999999988877889999999999998776433333 5789999999999999998642
Q ss_pred -CC----CCCcchhHHHHhHHHhhccCC-------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhC
Q 026402 124 -WG----EVDTRFSYIAICCLSILQRLD-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (239)
Q Consensus 124 -~~----~~d~~~ty~al~~l~~l~~~~-------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~ 191 (239)
++ ++++..|-.++.+|...+... ...++++++||.++|.. ..+++.+..+.-+|++.+
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~ 203 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD 203 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence 01 235555666666665554422 23678999999998753 235555555555666665
Q ss_pred CCCCCCHHHHHHHHHhccccCCccCCC-----------CCCCCChhhhhhhhccCCC
Q 026402 192 ALHHVDKDLLGWWLCERQVKSGGLNGR-----------PEKLPDVGLLLLVGSFKLD 237 (239)
Q Consensus 192 ~~~~~~~~~~~~~L~~~Q~~~GGf~~~-----------~~k~~D~c~s~~~~~~l~~ 237 (239)
. ....++.++|.++|+.+||+..+ +....++.-|-|++-+++.
T Consensus 204 ~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~ 257 (297)
T cd02896 204 S---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLK 257 (297)
T ss_pred C---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHh
Confidence 3 25788999999999999988743 2234478788777766543
No 45
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.46 E-value=5e-12 Score=108.21 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=119.4
Q ss_pred HHHHHHHHhhCCCCCcCHHHHHHHH-------HhccCCCCCCCCCCCC--CCchhHHHHHHHHHHhcCCCCCC---CHHH
Q 026402 37 YWGLTTLDILGKLDAVDEEDVISWI-------LKCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKVDIL---DADK 104 (239)
Q Consensus 37 y~al~~l~ll~~~~~~~~~~~i~~l-------~~~q~~dGgf~~~~~~--~~~~~~T~~al~~L~~l~~~~~~---~~~~ 104 (239)
.+++.-|...+..++..++++++|| +++|++||||+.+... .++++.|.+++.+|........+ .+++
T Consensus 27 ~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~r 106 (292)
T cd02897 27 IYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQ 106 (292)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 3444444444433322344554444 5689999999987543 78899999999998876542222 3688
Q ss_pred HHHHHHhccCCCCCcccC-C--------CCCCCcchhHHHHhHHHhhccCC-hhcHHHHHHHHHhccCCCCCccCCCCCC
Q 026402 105 VSNYIVGLQNEDGSFSGD-I--------WGEVDTRFSYIAICCLSILQRLD-KINVDKAVEYIVSCKNLDGGFGCTPGGE 174 (239)
Q Consensus 105 ~~~~l~~~Q~~dGgf~~~-~--------~~~~d~~~ty~al~~l~~l~~~~-~~~~~~~~~~l~~~Q~~dGGf~~~~~~~ 174 (239)
+++||.+.|++||||... + ...+++..|-.++.+|...+... ...++++++||.+.+.. .
T Consensus 107 a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~ 176 (292)
T cd02897 107 ALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------I 176 (292)
T ss_pred HHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------C
Confidence 999999999999999842 1 01123344555666666666532 34679999999987764 3
Q ss_pred CchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhc---cccCCccCCC-----------CCCCCChhhhhhhhccCC
Q 026402 175 SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCER---QVKSGGLNGR-----------PEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 175 s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~---Q~~~GGf~~~-----------~~k~~D~c~s~~~~~~l~ 236 (239)
.+++.+..+..+|..++. ....+++++|... +...|+|... ....+|+.-|-|++-+|.
T Consensus 177 ~~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall 249 (292)
T cd02897 177 SDPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALL 249 (292)
T ss_pred CCHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHH
Confidence 566778777888888872 2245555555544 4445565421 123567777777665553
No 46
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.45 E-value=3.6e-14 Score=103.69 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=40.3
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhH
Q 026402 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180 (239)
Q Consensus 102 ~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T 180 (239)
++++++||.+.|++||||.+... .++..|++++.+|..++.. ....++++++||+++|++||||+..+ ..+...|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~--~~~~~~t 76 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSG--GEYVSMT 76 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred Ccccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcC--CCCHHHH
Confidence 36789999999999999986533 4677788888887777652 24568999999999999999999873 3334566
Q ss_pred HHHHHHHHHhCCC-CCCCHHHHHHHHHhcccc
Q 026402 181 FCCVGALAIAGAL-HHVDKDLLGWWLCERQVK 211 (239)
Q Consensus 181 ~~al~aL~~l~~~-~~~~~~~~~~~L~~~Q~~ 211 (239)
..++.+|.+.+.. +...++++++||+++|.+
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 77 AAAIAALALAGVYPDDEAVERGLEWILSHQLD 108 (109)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Confidence 6777777666543 234489999999998753
No 47
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.45 E-value=1.5e-13 Score=83.87 Aligned_cols=44 Identities=45% Similarity=1.005 Sum_probs=41.8
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhC
Q 026402 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (239)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~ 191 (239)
++++++++||++||++||||+..|+.++|+++|||++++|++++
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999985
No 48
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.43 E-value=1.6e-11 Score=104.18 Aligned_cols=197 Identities=16% Similarity=0.123 Sum_probs=126.0
Q ss_pred HHHHHHHHHHcccCCCCccccccc-cchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCCCCC-----
Q 026402 6 ADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIG----- 76 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~----- 76 (239)
+++++++|.+.|++||||..|... .++++.|.+++.+|..++... +...+++++||.+.|++||+|.....
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~ 130 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE 130 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence 568889999999999999988766 789999999999998765422 22488999999999999999987543
Q ss_pred ----CCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHH
Q 026402 77 ----HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152 (239)
Q Consensus 77 ----~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~ 152 (239)
..+....|.+++.+|...+......++++++||.+..... .+......+..+|.+.+. ....++
T Consensus 131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~~----------~~~~~~a~la~al~~~g~--~~~~~~ 198 (282)
T cd02891 131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDGL----------LDPYALAILAYALALAGD--STRADE 198 (282)
T ss_pred hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhcccC----------CChHHHHHHHHHHHHcCc--cHHHHH
Confidence 2344567888888888766543345788999999876531 112222223344455544 122344
Q ss_pred HHHHHHhccCCCCCc-------cCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccC
Q 026402 153 AVEYIVSCKNLDGGF-------GCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (239)
Q Consensus 153 ~~~~l~~~Q~~dGGf-------~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~ 216 (239)
+++-|...-...++. ....+.......|.+++. ..+...+.....+.++||.+.+...|+|.
T Consensus 199 ~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 267 (282)
T cd02891 199 ALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALL--ALLKLGDLEEAGPIAKWLAQQRNSGGGFL 267 (282)
T ss_pred HHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHH--HHHhcCChhhHHHHHHHHHHcCCCCCCcc
Confidence 455554433222321 111222334445555553 33332234456889999998666666765
No 49
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.32 E-value=1.4e-12 Score=95.31 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=36.2
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchh
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFS 132 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~t 132 (239)
++++++||++.|++||+|.... .++...|++++.+|...+.. ....++++++||.++|++||||...+. .+...|
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t 76 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMT 76 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred Cccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHH
Confidence 3688999999999999997553 36678888888888777642 222479999999999999999997632 223334
Q ss_pred HHHHhHHHhhcc-CChhcHHHHHHHHHhccC
Q 026402 133 YIAICCLSILQR-LDKINVDKAVEYIVSCKN 162 (239)
Q Consensus 133 y~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~ 162 (239)
..++.++.+.+. .....++++++||++.|.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 77 AAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 445555544433 245668999999999864
No 50
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.29 E-value=4.9e-11 Score=99.65 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=127.5
Q ss_pred HHHHHHHcccCCCCcccc-ccccchHHHHHHHHHHHHhhCCCCCc---CHHHHHHHHHhccCCCCCCCCCCCC-------
Q 026402 9 HVKYIISVEKKKDSFESV-VMEHLRLNGAYWGLTTLDILGKLDAV---DEEDVISWILKCQDESGGFAGNIGH------- 77 (239)
Q Consensus 9 ~~~yl~~~q~~dg~~~~~-~~~~~~~~~~y~al~~l~ll~~~~~~---~~~~~i~~l~~~q~~dGgf~~~~~~------- 77 (239)
..+-+.+.+++||+|..+ ...++.+|.|-|++..+....+...+ .++++++||.+.|++||.|......
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g 81 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG 81 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG
T ss_pred chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC
Confidence 345577888999999988 66789999999999999988875332 4788999999999999999864321
Q ss_pred --CCchhHHHHHHHHHHhcCCCC-------CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-HHhHHHhhccCCh
Q 026402 78 --DPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AICCLSILQRLDK 147 (239)
Q Consensus 78 --~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~-al~~l~~l~~~~~ 147 (239)
..++..|.+.+.+|...+... ...++++++||++.... ....|. |+.+..+......
T Consensus 82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~-------------~~~~Y~lAl~aYAL~la~~~ 148 (246)
T PF07678_consen 82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN-------------IQDPYTLALVAYALALAGDS 148 (246)
T ss_dssp GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC-------------TSSHHHHHHHHHHHHHTTTC
T ss_pred CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc-------------cCCHHHHHHHHHHHHhhccc
Confidence 234566777777776655321 12368999999877211 111332 2322222211134
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCCC--------------CCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCC
Q 026402 148 INVDKAVEYIVSCKNLDGGFGCTPGG--------------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG 213 (239)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~--------------~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~G 213 (239)
...+++.+-|.+....+|+..+-+.. ..++..|.+||.++... .+.......++||.+.|+..|
T Consensus 149 ~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~G 226 (246)
T PF07678_consen 149 PQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSGG 226 (246)
T ss_dssp HHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTTS
T ss_pred chHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCC
Confidence 56678888888877666654221111 13567899998666555 334557889999999999999
Q ss_pred ccCC
Q 026402 214 GLNG 217 (239)
Q Consensus 214 Gf~~ 217 (239)
||..
T Consensus 227 gf~S 230 (246)
T PF07678_consen 227 GFGS 230 (246)
T ss_dssp STSS
T ss_pred ccCc
Confidence 9974
No 51
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.26 E-value=5.2e-12 Score=76.99 Aligned_cols=44 Identities=39% Similarity=0.704 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhc
Q 026402 100 LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143 (239)
Q Consensus 100 ~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~ 143 (239)
+|++++++||.++|++||||+++|++++|+.+||+++++|.+++
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999875
No 52
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.23 E-value=2.9e-11 Score=108.58 Aligned_cols=204 Identities=18% Similarity=0.094 Sum_probs=134.3
Q ss_pred CCCCcccccc--ccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCC-------------------
Q 026402 19 KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH------------------- 77 (239)
Q Consensus 19 ~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~------------------- 77 (239)
..|+|..+.+ ..++...|-=++..+.... +..+.+.+++|+...|+..|||..++..
T Consensus 248 ~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~--~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~ 325 (517)
T COG1657 248 SPGGWGFSNINTGYPDADDTAGVVRALIGVQ--SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVD 325 (517)
T ss_pred CCCccceeecccCCCCchhhhHHHHHHHhhc--chhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcccccc
Confidence 4577776654 2344433333333333333 2336788999999999999999987521
Q ss_pred CCchhHHHHHHHHHHhcCCCC----CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC-----hh
Q 026402 78 DPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KI 148 (239)
Q Consensus 78 ~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-----~~ 148 (239)
.+.+..|-..+.+|..++... ...++++++||.+.|.++|.|.+... +|++|.....+..+.... ..
T Consensus 326 ~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~ 401 (517)
T COG1657 326 PSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEV 401 (517)
T ss_pred CCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchH
Confidence 222222322333333333221 35689999999999999999988764 577776655555544322 24
Q ss_pred cHHHHHHHHHhccCCCCCccCCCCC----------CCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCC
Q 026402 149 NVDKAVEYIVSCKNLDGGFGCTPGG----------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR 218 (239)
Q Consensus 149 ~~~~~~~~l~~~Q~~dGGf~~~~~~----------~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~ 218 (239)
.+.+++.|+.++|++||||+..... .+-...|.||+..+......+...++..++.+.+.|.++|.+..+
T Consensus 402 ~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~ 481 (517)
T COG1657 402 LVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREA 481 (517)
T ss_pred HHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccc
Confidence 5789999999999999999886432 233457788888887776655555788999999999998888877
Q ss_pred CCCCCChhhh
Q 026402 219 PEKLPDVGLL 228 (239)
Q Consensus 219 ~~k~~D~c~s 228 (239)
+-.-.=-|+.
T Consensus 482 ~~eg~~~~~~ 491 (517)
T COG1657 482 EREGGFNCNF 491 (517)
T ss_pred eecccCCCCc
Confidence 5333333443
No 53
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.21 E-value=6.3e-10 Score=94.46 Aligned_cols=145 Identities=19% Similarity=0.109 Sum_probs=102.0
Q ss_pred CHHHHHHHHHhccCCCCCCCCCCCC-CCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHhccCCCCCcccCCC----
Q 026402 53 DEEDVISWILKCQDESGGFAGNIGH-DPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW---- 124 (239)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~-~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~~---- 124 (239)
.+++++++|+++|++||||+.+++. .++++.|.+++.+|........++ ++++++||.+.|.+||+|.....
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~ 129 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR 129 (282)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence 4677999999999999999999887 889999999999998765433333 78999999999999999986432
Q ss_pred -----CCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHH
Q 026402 125 -----GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD 199 (239)
Q Consensus 125 -----~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~ 199 (239)
...+...|..++.+|...+......++++++||.+.... ..++........+|.+++. .....
T Consensus 130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~ 197 (282)
T cd02891 130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRAD 197 (282)
T ss_pred hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHH
Confidence 123334566666666666654445789999999986643 2333444444555666654 23345
Q ss_pred HHHHHHHhcc
Q 026402 200 LLGWWLCERQ 209 (239)
Q Consensus 200 ~~~~~L~~~Q 209 (239)
++++-|...-
T Consensus 198 ~~l~~l~~~~ 207 (282)
T cd02891 198 EALKKLLEAA 207 (282)
T ss_pred HHHHHHHHHh
Confidence 5566665553
No 54
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.16 E-value=1.2e-10 Score=106.20 Aligned_cols=115 Identities=20% Similarity=0.326 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccCCCCCCCCCC--------
Q 026402 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDESGGFAGNI-------- 75 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~~dGgf~~~~-------- 75 (239)
++++++||++.|.+||+|.... +...+.+|++++.+|...|.. +....+++++||++.|++||||+.++
T Consensus 591 i~~av~~ie~~Q~~DGSWyGsW-gvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Y 669 (760)
T KOG0497|consen 591 IEKAVEFIEKLQLPDGSWYGSW-GVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRY 669 (760)
T ss_pred HHHHHHHHHHcCCCCCcccchh-hHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccc
Confidence 5799999999999999986332 268888999999999999975 33478999999999999999999764
Q ss_pred ----CCCCchhHHHHHHHHHHhcCCCCC--CCHHHHHHHHHhccCCCCCccc
Q 026402 76 ----GHDPHVLYTLSAVQVLALFDKVDI--LDADKVSNYIVGLQNEDGSFSG 121 (239)
Q Consensus 76 ----~~~~~~~~T~~al~~L~~l~~~~~--~~~~~~~~~l~~~Q~~dGgf~~ 121 (239)
+..+++..|..|+++|.+.+..+. ..+++++..|...|.++|-|..
T Consensus 670 i~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpq 721 (760)
T KOG0497|consen 670 IPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQ 721 (760)
T ss_pred cccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcch
Confidence 346789999999999999987543 4789999999999999999874
No 55
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.72 E-value=9.8e-08 Score=79.79 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=97.6
Q ss_pred HHHHHHhccCCCCCCCCC-CCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHhccCCCCCcccCCC---C----
Q 026402 57 VISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW---G---- 125 (239)
Q Consensus 57 ~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~~---~---- 125 (239)
+.+-+++.+++||+|+.+ ...+++++.|.+++..|....+.-.+| ++++++||.+.|++||+|..... .
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g 81 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG 81 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG
T ss_pred chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC
Confidence 445678899999999999 777899999999999999887764444 57899999999999999975321 0
Q ss_pred --CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCC
Q 026402 126 --EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV 196 (239)
Q Consensus 126 --~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~ 196 (239)
..++..|-.++.+|.-.+.. ....++++++||.+... ...+++...-+--||.+++ +..
T Consensus 82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~----------~~~~~Y~lAl~aYAL~la~--~~~ 149 (246)
T PF07678_consen 82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD----------NIQDPYTLALVAYALALAG--DSP 149 (246)
T ss_dssp GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG----------CTSSHHHHHHHHHHHHHTT--TCH
T ss_pred CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc----------ccCCHHHHHHHHHHHHhhc--ccc
Confidence 11233343344444333311 13467899999986621 1233333322223344444 345
Q ss_pred CHHHHHHHHHhccccCCccCCCCCC
Q 026402 197 DKDLLGWWLCERQVKSGGLNGRPEK 221 (239)
Q Consensus 197 ~~~~~~~~L~~~Q~~~GGf~~~~~k 221 (239)
..+++.+-|.+....+|+...++..
T Consensus 150 ~~~~~~~~L~~~a~~~~~~~~W~~~ 174 (246)
T PF07678_consen 150 QASKLLNKLNSMATTEGGLRYWSSD 174 (246)
T ss_dssp HHHHHHHHHHCHCEETTTTCEE-SS
T ss_pred hHHHHHHHHHHhhhhccccCcccCC
Confidence 5677888888887777776655433
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.39 E-value=4.6e-07 Score=81.88 Aligned_cols=177 Identities=20% Similarity=0.184 Sum_probs=117.3
Q ss_pred HHHHHHHHhccCCCCCCCCCCC--CCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCC--------
Q 026402 55 EDVISWILKCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIW-------- 124 (239)
Q Consensus 55 ~~~i~~l~~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~-------- 124 (239)
.+...|-...+...|||+.... ..++...|-.++..+.... +..+.++.++|+...|+..|||.....
T Consensus 236 ~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~--~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~ 313 (517)
T COG1657 236 LKYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQ--SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLR 313 (517)
T ss_pred HHhhccccccccCCCccceeecccCCCCchhhhHHHHHHHhhc--chhhHHhhhhHhhhcccccCceeeeccccccHHHh
Confidence 3344444445556777776543 5678888888888776544 344577899999999999999874311
Q ss_pred -------C-CCCcc---hhHHHHhHHHhhccC-C---hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHH
Q 026402 125 -------G-EVDTR---FSYIAICCLSILQRL-D---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (239)
Q Consensus 125 -------~-~~d~~---~ty~al~~l~~l~~~-~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~ 189 (239)
+ ..+.. -|-..+..|..++.- + ...++++++||++.|.++|.|-...+. -..+.|.-++.+|..
T Consensus 314 ~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v-~~iY~~s~a~~~l~~ 392 (517)
T COG1657 314 LLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWGV-CYIYGTSGALSALAL 392 (517)
T ss_pred hCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEEE-EEEEehhhhhhhhhc
Confidence 0 01111 122233333333321 2 356899999999999999988655432 233446666677777
Q ss_pred hCCCC--CCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccC
Q 026402 190 AGALH--HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 190 l~~~~--~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
.+..+ ...+.+++.||..+|+++|||+..-..++|..|++= ..++
T Consensus 393 ~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t-~~sl 439 (517)
T COG1657 393 VGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGT-ESSL 439 (517)
T ss_pred cCccccchHHHHHHHHHhhhccccCCCcccccccccccccccc-cchh
Confidence 77543 234789999999999999999998888888877765 4443
No 57
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.01 E-value=0.0001 Score=62.39 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHhccCCCCCcccCCC-CC-CCcchhHH---HHhHHHhhccC------
Q 026402 82 LYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDGSFSGDIW-GE-VDTRFSYI---AICCLSILQRL------ 145 (239)
Q Consensus 82 ~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~Q~~dGgf~~~~~-~~-~d~~~ty~---al~~l~~l~~~------ 145 (239)
..|...+..|..+-... ....+++++||.+.|.++|||..... .. -...-||. .+.++.+|..+
T Consensus 44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~ 123 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDP 123 (290)
T ss_pred ccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCC
Confidence 35666666665542211 11268899999999999999985421 11 00111221 23333333211
Q ss_pred ----C-------hhcHHHHHHHHHhccCCCCCc
Q 026402 146 ----D-------KINVDKAVEYIVSCKNLDGGF 167 (239)
Q Consensus 146 ----~-------~~~~~~~~~~l~~~Q~~dGGf 167 (239)
+ ...++|+++||+++|-++||+
T Consensus 124 ~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 124 FDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 0 235789999999999888765
No 58
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.86 E-value=0.00019 Score=60.77 Aligned_cols=133 Identities=12% Similarity=0.030 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHhhCC---CC--CcCHHHHHHHHHhccCCCCCCCCCCC----CCCch----hHHHHHHHHHHhcCC--
Q 026402 32 RLNGAYWGLTTLDILGK---LD--AVDEEDVISWILKCQDESGGFAGNIG----HDPHV----LYTLSAVQVLALFDK-- 96 (239)
Q Consensus 32 ~~~~~y~al~~l~ll~~---~~--~~~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~----~~T~~al~~L~~l~~-- 96 (239)
|-..|+..+.-|+-+-. .. ....+++++||++.|+++|||+.+.. ...|+ ..+..++..|..+..
T Consensus 42 DN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~ 121 (290)
T TIGR02474 42 DNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGK 121 (290)
T ss_pred cCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhcc
Confidence 44446665555554421 11 22578899999999999999997642 12222 123345555543311
Q ss_pred --CCC----------CCHHHHHHHHHhccCCCCCcccCCCC---------------CCC-cc--hhHHHHhHHHhhccCC
Q 026402 97 --VDI----------LDADKVSNYIVGLQNEDGSFSGDIWG---------------EVD-TR--FSYIAICCLSILQRLD 146 (239)
Q Consensus 97 --~~~----------~~~~~~~~~l~~~Q~~dGgf~~~~~~---------------~~d-~~--~ty~al~~l~~l~~~~ 146 (239)
... ..++++++||.+.|.++||+.+.+.. |.. ++ -+-.++..|.-+..++
T Consensus 122 ~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 201 (290)
T TIGR02474 122 DPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPS 201 (290)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCC
Confidence 011 12589999999999999887654321 111 11 1222333322233333
Q ss_pred h---hcHHHHHHHHHhccCCC
Q 026402 147 K---INVDKAVEYIVSCKNLD 164 (239)
Q Consensus 147 ~---~~~~~~~~~l~~~Q~~d 164 (239)
+ ..++.+++|+.+.+-++
T Consensus 202 ~~i~~ai~~A~~W~~~~~i~g 222 (290)
T TIGR02474 202 AEIKEAIRAGVAWFDTSRIRG 222 (290)
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 2 35788999999887543
No 59
>PLN02279 ent-kaur-16-ene synthase
Probab=97.25 E-value=0.0081 Score=57.99 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=107.0
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCC----Cch
Q 026402 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHD----PHV 81 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~----~~~ 81 (239)
.+.+++-|++..+.-. . .+-...|.|+...=+. +........++++||+..|.+||+|+..+... ..+
T Consensus 35 ~~~~~~~i~~~l~~~e-~------s~s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~l 106 (784)
T PLN02279 35 FEGTKERIKKMFDKVE-L------SVSSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDAL 106 (784)
T ss_pred chhHHHHHHHHhccCc-C------CCchhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhh
Confidence 3455566665554331 1 2334557776554443 32222257889999999999999999653322 345
Q ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccC----CC----CCcccC-CC-----C--CCCcchhHHHHhHHHhhccC
Q 026402 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQN----ED----GSFSGD-IW-----G--EVDTRFSYIAICCLSILQRL 145 (239)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~----~d----Ggf~~~-~~-----~--~~d~~~ty~al~~l~~l~~~ 145 (239)
.+|.++|.+|.--+. ....+++.+.||.+--. .+ =||.-. |. . ..+..+--..+..+ +.+.
T Consensus 107 l~TlAcvlAL~~w~~-~~~~~~~gl~fi~~n~~~~~d~~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~--~~~r 183 (784)
T PLN02279 107 SSTLASILALKKWGV-GEEQINKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAM--LHKR 183 (784)
T ss_pred HHHHHHHHHHHHHhc-CcccchhhHHHHHHHHHhhcccccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHH--HHhh
Confidence 799999988865433 12234666777764211 00 122210 00 0 00111111111111 1100
Q ss_pred C--------------h----hcHHH---HHHH--HHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHH
Q 026402 146 D--------------K----INVDK---AVEY--IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLG 202 (239)
Q Consensus 146 ~--------------~----~~~~~---~~~~--l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~ 202 (239)
. + -..|. .++| ++..|..||+|...| ..|.+++. . .. -+++.
T Consensus 184 ~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~SP------saTAa~l~-----~---~~-~~~~~ 248 (784)
T PLN02279 184 DLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSP------STTAAAFS-----H---LQ-NAGCL 248 (784)
T ss_pred hHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCcccCc------HHHHHHHH-----c---cC-ChHHH
Confidence 0 0 00111 1233 567788999998665 33654442 1 11 37889
Q ss_pred HHHHhccccCCccCCCCCC-CCChhhhhhhhccCC
Q 026402 203 WWLCERQVKSGGLNGRPEK-LPDVGLLLLVGSFKL 236 (239)
Q Consensus 203 ~~L~~~Q~~~GGf~~~~~k-~~D~c~s~~~~~~l~ 236 (239)
+||..-+...|| +.|+. +.|....-|++.+|.
T Consensus 249 ~yL~~~~~~~~g--~vP~~yp~~~fe~l~lvd~L~ 281 (784)
T PLN02279 249 RYLRSLLQKFGN--AVPTVYPLDQYARLSMVDTLE 281 (784)
T ss_pred HHHHHHHHhcCC--CCCCCCcccHHHHhHHHHHHH
Confidence 999877665553 56755 677777778777664
No 60
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0075 Score=61.52 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHHH-------hccCCCCCCCCCCC--CCCchhHHHHHHHHHHhcCCCCCCC---HH
Q 026402 36 AYWGLTTLDILGKLDAVDEEDVISWIL-------KCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILD---AD 103 (239)
Q Consensus 36 ~y~al~~l~ll~~~~~~~~~~~i~~l~-------~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~---~~ 103 (239)
.++++.=|...++..+..+++++++|. ..+++||.|+.+-. ..+.++-|.+.+..+.....+-.+| +.
T Consensus 948 ni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~ 1027 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVIT 1027 (1436)
T ss_pred hhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHH
Confidence 566677777777665445667777764 45679999998865 5677889999998888776543333 67
Q ss_pred HHHHHHHhccCCCCCccc
Q 026402 104 KVSNYIVGLQNEDGSFSG 121 (239)
Q Consensus 104 ~~~~~l~~~Q~~dGgf~~ 121 (239)
+++.||...|.++|+|..
T Consensus 1028 ~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1028 QALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHhhccCceEec
Confidence 899999999999999974
No 61
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.51 E-value=0.08 Score=51.25 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=35.0
Q ss_pred HHHHHHHHcccCCCCccccc--cccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026402 8 KHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC 64 (239)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~ 64 (239)
+.++||..-|.+||+|+... ....++-.|.-||.+|.-=+..+ ..+++++.||.+.
T Consensus 119 ~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~-~~i~rGl~fi~~n 176 (800)
T PLN02592 119 SSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHP-EKCEKGMSFFREN 176 (800)
T ss_pred HHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccH-HHHHHHHHHHHHH
Confidence 57899999999999997531 11233444555555554322222 2567888888763
No 62
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.095 Score=53.83 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHHHHH-------cccCCCCcccccc--ccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCC
Q 026402 6 ADKHVKYIIS-------VEKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG 73 (239)
Q Consensus 6 ~~~~~~yl~~-------~q~~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~ 73 (239)
.+++++||+. .+++||+|..++. .....|.|-|++..+....... +.-..++++||...|.++|.|-.
T Consensus 966 k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 966 KRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEec
Confidence 3567777764 4569999998876 5677888999999988886542 33577899999999999999875
Q ss_pred C
Q 026402 74 N 74 (239)
Q Consensus 74 ~ 74 (239)
.
T Consensus 1046 ~ 1046 (1436)
T KOG1366|consen 1046 V 1046 (1436)
T ss_pred c
Confidence 3
No 63
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=95.88 E-value=0.028 Score=47.79 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=44.4
Q ss_pred CcchhHHHHhHHHhhccCC-----hhcHHHHHHHHHhccCCCCCccCC-CCC-CCchhhHH---HHHHHHHHhC----CC
Q 026402 128 DTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGGFGCT-PGG-ESHSGQIF---CCVGALAIAG----AL 193 (239)
Q Consensus 128 d~~~ty~al~~l~~l~~~~-----~~~~~~~~~~l~~~Q~~dGGf~~~-~~~-~s~~~~T~---~al~aL~~l~----~~ 193 (239)
|-..|+..+.-|.-+-... .....|+++||++.|.++|||... |.. .-+...|| ..+..|.+|. ..
T Consensus 37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~ 116 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGK 116 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-
T ss_pred cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhc
Confidence 4456776666654443211 245789999999999999999764 321 12222232 1223333332 11
Q ss_pred CCC-------------CHHHHHHHHHhcccc
Q 026402 194 HHV-------------DKDLLGWWLCERQVK 211 (239)
Q Consensus 194 ~~~-------------~~~~~~~~L~~~Q~~ 211 (239)
.+. .+++++++|+.+|..
T Consensus 117 ~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~ 147 (289)
T PF09492_consen 117 GDFAFVDESLRARARAAVDKGIDCILKTQIR 147 (289)
T ss_dssp TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-E
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 111 257789999999963
No 64
>PLN02279 ent-kaur-16-ene synthase
Probab=95.61 E-value=0.6 Score=45.41 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=35.5
Q ss_pred HHHHHHHHcccCCCCcccccc----ccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHh
Q 026402 8 KHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63 (239)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~----~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~ 63 (239)
+.++||..-|.+||+|+.... ..-.+-.|--||.+|.-=+..+ ..+++.+.||.+
T Consensus 77 ~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~-~~~~~gl~fi~~ 135 (784)
T PLN02279 77 ECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGE-EQINKGLQFIEL 135 (784)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCc-ccchhhHHHHHH
Confidence 578999999999999974311 1234445666666665444432 246777788764
No 65
>PLN02592 ent-copalyl diphosphate synthase
Probab=95.51 E-value=0.055 Score=52.32 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=58.0
Q ss_pred HHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCC--CCCchhH
Q 026402 8 KHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG--HDPHVLY 83 (239)
Q Consensus 8 ~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~--~~~~~~~ 83 (239)
..++-|+++.+ .||.. ++-...|.| |+....++........+.++||+..|.+||+|+.... ....+.+
T Consensus 76 ~~~~~ir~~l~~~~~g~~------S~S~YDTAW-VAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~ 148 (800)
T PLN02592 76 ERVKTVKSMLSSMEDGEI------SISAYDTAW-VALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLIN 148 (800)
T ss_pred HHHHHHHHHHhcccCCCc------CCcHHHhHH-HhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHh
Confidence 44555555444 33322 244556788 3332233222122567899999999999999997532 1234689
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q 026402 84 TLSAVQVLALFDKVDILDADKVSNYIVGL 112 (239)
Q Consensus 84 T~~al~~L~~l~~~~~~~~~~~~~~l~~~ 112 (239)
|.+|+.+|.--+. ....+++++.||.+.
T Consensus 149 TLAcvlAL~~w~~-~~~~i~rGl~fi~~n 176 (800)
T PLN02592 149 TLACVVALKSWNL-HPEKCEKGMSFFREN 176 (800)
T ss_pred HHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 9999988864322 122357788888753
No 66
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=94.15 E-value=0.21 Score=42.59 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHhhCCC--C---CcCHHHHHHHHHhccCCCCCCCCCC----CCCCch----hHHHHHHHHHHhc----
Q 026402 32 RLNGAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESGGFAGNI----GHDPHV----LYTLSAVQVLALF---- 94 (239)
Q Consensus 32 ~~~~~y~al~~l~ll~~~--~---~~~~~~~i~~l~~~q~~dGgf~~~~----~~~~~~----~~T~~al~~L~~l---- 94 (239)
|-..|+-.+.-|+-+-.. + ....+++++||++.|.++|||..+. ++..|+ ..+.-.|..|...
T Consensus 37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~ 116 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGK 116 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-
T ss_pred cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhc
Confidence 333455555555443221 1 1257889999999999999999752 222222 1222233333322
Q ss_pred CCCCCCC----------HHHHHHHHHhccCCC----CCcccC-------C-----CCCCCcchhHHHHhHHHhhc--cCC
Q 026402 95 DKVDILD----------ADKVSNYIVGLQNED----GSFSGD-------I-----WGEVDTRFSYIAICCLSILQ--RLD 146 (239)
Q Consensus 95 ~~~~~~~----------~~~~~~~l~~~Q~~d----Ggf~~~-------~-----~~~~d~~~ty~al~~l~~l~--~~~ 146 (239)
+....++ +++++++|.++|... -+|..- | ...+-++..-++-.+..|+. .++
T Consensus 117 ~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 196 (289)
T PF09492_consen 117 GDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS 196 (289)
T ss_dssp TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC
Confidence 1122222 588999999999843 335421 1 11122222222222223333 233
Q ss_pred h---hcHHHHHHHHHhccCCCCCc
Q 026402 147 K---INVDKAVEYIVSCKNLDGGF 167 (239)
Q Consensus 147 ~---~~~~~~~~~l~~~Q~~dGGf 167 (239)
+ ..++.+++|+.+.+-++.-|
T Consensus 197 ~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 197 PEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCCCcee
Confidence 2 35788999999876554433
No 67
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=92.98 E-value=4.3 Score=38.71 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 026402 30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI 109 (239)
Q Consensus 30 ~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l 109 (239)
..++..+||++.+|..||...+ +.+.+++++.+.-.+. .+++...|+++.+...++.... -..++.+-+
T Consensus 46 ~~dLes~yyav~glk~Lg~~~~-~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~C~~~-~~~~~~~~l 114 (636)
T PF05817_consen 46 SSDLESAYYAVLGLKLLGIKVP-DSKAACKFLKKALDES---------SNDLESLFYAASASKALKCKVS-VSNEVKSLL 114 (636)
T ss_pred cccHHHHHHHHhhHHHhCCCCC-ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcCCccc-CcHHHHHHH
Confidence 3667889999999999998754 5889999998864331 1457888999998888873222 134455555
Q ss_pred HhccCCCCCcccCCCCCCCcchhHHHHhHHHhhcc-CChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHH
Q 026402 110 VGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALA 188 (239)
Q Consensus 110 ~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~ 188 (239)
...-++| +++...|.++.++..++. ....+.++.++-|...+..|. .+..+-+|+.+++
T Consensus 115 ~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~al~~aa 174 (636)
T PF05817_consen 115 KAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYALHAAA 174 (636)
T ss_pred HHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHHHHHHH
Confidence 5544333 245558999999999975 223467778888877776533 2233444555555
Q ss_pred HhC
Q 026402 189 IAG 191 (239)
Q Consensus 189 ~l~ 191 (239)
.|+
T Consensus 175 ~L~ 177 (636)
T PF05817_consen 175 QLS 177 (636)
T ss_pred hhc
Confidence 554
No 68
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=90.78 E-value=1.4 Score=38.35 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=67.1
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCC----------CHHHHHHH
Q 026402 39 GLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL----------DADKVSNY 108 (239)
Q Consensus 39 al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~----------~~~~~~~~ 108 (239)
++..|++--.... .....+.-|....+.+..|+ +.-++..+..|+.+|..+.+.... .++++++.
T Consensus 149 sL~vLALCv~~~~-~~~~~v~kL~~~~~~~~~~~----~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~k 223 (326)
T PF01122_consen 149 SLGVLALCVHNKR-VSLSVVAKLLKAENHNFYHG----SQFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEK 223 (326)
T ss_dssp HHHHHHHHHTTHH-HHHHHHHHHHHHHHSSTSS-----STCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCC-cCHHHHHHHHHHHHhhcccC----CCCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHH
Confidence 5666665533222 23344555555555552222 123466666777777766442111 15778889
Q ss_pred HHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC---hhcHHHHHHHHHhccCCCCCcc
Q 026402 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD---KINVDKAVEYIVSCKNLDGGFG 168 (239)
Q Consensus 109 l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~---~~~~~~~~~~l~~~Q~~dGGf~ 168 (239)
|.+.|.+||-|+. +.+|--|+.+|...+... ..+-.++.+.++... ++|.|.
T Consensus 224 Il~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 224 ILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp HHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred HHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence 9999999999883 455666777766665522 235678889988743 489886
No 69
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=89.49 E-value=1.6 Score=37.89 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhCCCCCc----------CHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCC---CCH
Q 026402 36 AYWGLTTLDILGKLDAV----------DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI---LDA 102 (239)
Q Consensus 36 ~y~al~~l~ll~~~~~~----------~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~---~~~ 102 (239)
..-|+.+|..+...... .++++++.|++.|.+||-|| ++++|--|+++|...+.... -+.
T Consensus 189 ~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~~w~C 261 (326)
T PF01122_consen 189 GAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSESEWNC 261 (326)
T ss_dssp HHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHHHHHH
T ss_pred HHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcchhhHH
Confidence 55566667766553211 24557777888899999885 68999999999987765321 236
Q ss_pred HHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhh-ccCChhcHHHHHHHHHhccCCCCCcc
Q 026402 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL-QRLDKINVDKAVEYIVSCKNLDGGFG 168 (239)
Q Consensus 103 ~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l-~~~~~~~~~~~~~~l~~~Q~~dGGf~ 168 (239)
.++.+++.+. .++|.|..- . .+..+|-.| |+ +..++.. .+|+.++|-+.
T Consensus 262 ~k~~~~ll~~-i~~G~F~nP---------~-a~aQiLPaL~gK-TYLDv~~-----~~C~~~~~~~~ 311 (326)
T PF01122_consen 262 QKALDALLKE-ISQGAFQNP---------M-AIAQILPALNGK-TYLDVNS-----VDCSSPDGNLN 311 (326)
T ss_dssp HHHHHHHHHH-HTTTTT-SH---------H-HHHHHHHHHTT---GGGGGS-------SSS--EE--
T ss_pred HHHHHHHHHH-hhcCCCCCH---------H-HHHHHHHHHcCC-CccccCC-----CCCCCCCCccc
Confidence 7888888885 458988731 1 233444333 33 2223211 46888887765
No 70
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=75.54 E-value=76 Score=30.22 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=38.9
Q ss_pred HHHHHHHh-ccCC-CCCccCCCC-----CCCchhhHHHHHHHHHHhCCCCCC-----------CHHHHHHHHHhccccCC
Q 026402 152 KAVEYIVS-CKNL-DGGFGCTPG-----GESHSGQIFCCVGALAIAGALHHV-----------DKDLLGWWLCERQVKSG 213 (239)
Q Consensus 152 ~~~~~l~~-~Q~~-dGGf~~~~~-----~~s~~~~T~~al~aL~~l~~~~~~-----------~~~~~~~~L~~~Q~~~G 213 (239)
..++-|.+ +..+ +||+..-++ +.+=.-.|+|..-+++.+++.+.. ...++++|++.+.++.|
T Consensus 501 ~Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~G 580 (616)
T TIGR01577 501 KMAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLG 580 (616)
T ss_pred HHHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCC
Confidence 34555543 3333 566744432 133446788888888888764321 34567899999877766
Q ss_pred ccC
Q 026402 214 GLN 216 (239)
Q Consensus 214 Gf~ 216 (239)
=+.
T Consensus 581 ll~ 583 (616)
T TIGR01577 581 LLP 583 (616)
T ss_pred CCc
Confidence 555
No 71
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=55.95 E-value=2e+02 Score=27.76 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCC-CCCCCHHHHHHHHH
Q 026402 32 RLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIV 110 (239)
Q Consensus 32 ~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~ 110 (239)
++...||++.+...|+-... ...++.+-|...-++| +.+...|+++.+|..++. .+..|.+++++-|.
T Consensus 86 ~~e~lfya~~~~~~L~C~~~-~~~~~~~~l~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~ 154 (636)
T PF05817_consen 86 DLESLFYAASASKALKCKVS-VSNEVKSLLKAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQ 154 (636)
T ss_pred hHHHHHHHHHHHhhcCCccc-CcHHHHHHHHHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHH
Confidence 57789999999999986432 2455566665544443 456778999999998864 22347888888888
Q ss_pred hccCCCCC
Q 026402 111 GLQNEDGS 118 (239)
Q Consensus 111 ~~Q~~dGg 118 (239)
..+..|.+
T Consensus 155 ~~l~kdds 162 (636)
T PF05817_consen 155 ASLKKDDS 162 (636)
T ss_pred HHhccccc
Confidence 88887643
No 72
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=43.58 E-value=48 Score=35.43 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhccCCCCCCCCCCC-CCCchhHHHHHHHHHHhcC
Q 026402 53 DEEDVISWILKCQDESGGFAGNIG-HDPHVLYTLSAVQVLALFD 95 (239)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~-~~~~~~~T~~al~~L~~l~ 95 (239)
..+.++.-|.++|+.+|+|+++.+ ..++.+.|.+++..|....
T Consensus 1200 ~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~ 1243 (1621)
T COG2373 1200 RLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAR 1243 (1621)
T ss_pred HHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhh
Confidence 466688889999999999999876 7889999999998886653
No 73
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=42.09 E-value=60 Score=28.07 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCCCCCccCC---CC--CCCchhhHHHHHHHHHH---hCCCCC----CCHHHHHHHHHhc-cccCCc
Q 026402 150 VDKAVEYIVSCKNLDGGFGCT---PG--GESHSGQIFCCVGALAI---AGALHH----VDKDLLGWWLCER-QVKSGG 214 (239)
Q Consensus 150 ~~~~~~~l~~~Q~~dGGf~~~---~~--~~s~~~~T~~al~aL~~---l~~~~~----~~~~~~~~~L~~~-Q~~~GG 214 (239)
.++.++.|...|.+||.|... |. ...+.+.|.....+|.. .+..+. ...+++.+.|.++ -.++|.
T Consensus 217 ~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 217 AKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 456778888899999999654 23 34566666655555532 222221 1257788899888 556555
No 74
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=39.90 E-value=45 Score=35.62 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=36.6
Q ss_pred cHHHHHHHHHhccCCCCCccCCCC-CCCchhhHHHHHHHHHHhC
Q 026402 149 NVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAG 191 (239)
Q Consensus 149 ~~~~~~~~l~~~Q~~dGGf~~~~~-~~s~~~~T~~al~aL~~l~ 191 (239)
.++.++.=|++.|..+|+|+..++ ..+|+.-|.|++-.|..+.
T Consensus 1200 ~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~ 1243 (1621)
T COG2373 1200 RLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAR 1243 (1621)
T ss_pred HHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhh
Confidence 467788889999999999999876 7789999999998887763
No 75
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=39.63 E-value=86 Score=27.09 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=37.3
Q ss_pred HHHHHHHHHhccCCCCCCCCCCC-----CCCchhHHHHHHHHHHh-c--CCCCC----CCHHHHHHHHHhc-cCCCCC
Q 026402 54 EEDVISWILKCQDESGGFAGNIG-----HDPHVLYTLSAVQVLAL-F--DKVDI----LDADKVSNYIVGL-QNEDGS 118 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~-----~~~~~~~T~~al~~L~~-l--~~~~~----~~~~~~~~~l~~~-Q~~dGg 118 (239)
.++.++.|.+.|.+||.|..... ...+...|.....+|.. + +-++. ...+++++.|.+. -++||.
T Consensus 217 ~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 217 AKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 45677788889999999876532 22333444333333321 2 21211 1257888999999 777776
No 76
>PRK13617 psbV cytochrome c-550; Provisional
Probab=34.82 E-value=43 Score=26.31 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCC-CccC
Q 026402 99 ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDG-GFGC 169 (239)
Q Consensus 99 ~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dG-Gf~~ 169 (239)
..+++.+++||+.=+..||........+ .++ . ....-.+..+++.+++....||+...+.+| +|+.
T Consensus 99 r~nv~aLv~yikdP~sydg~~s~~e~~P-~~~-~---~~imP~~~~LsdeeL~alAayLl~~~k~~~~~wgg 165 (170)
T PRK13617 99 RDNVDALVDYLKDPTSYDGEYSIADLHP-SMR-S---ADLYPAMRDLNDEDLRLMAGYILVAPKVQGTQWGG 165 (170)
T ss_pred CCCHHHHHHHHhChHhhcchhhccccCc-ccc-c---cccCcccCCCCHHHHHHHHHHHHhcccccccccCC
Confidence 3468999999999999998754321100 000 0 001112234567789999999999877666 6764
No 77
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=34.57 E-value=1.1e+02 Score=20.69 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.2
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCC
Q 026402 148 INVDKAVEYIVSCKNLDGGFGCTPG 172 (239)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGGf~~~~~ 172 (239)
..+|.+++||++.-+..-||-...+
T Consensus 56 eIiEnAVefiLrSMtR~tgF~E~~d 80 (88)
T PF15144_consen 56 EIIENAVEFILRSMTRSTGFMEFED 80 (88)
T ss_pred HHHHHHHHHHHHHhhcccCceecCC
Confidence 4689999999987776777766543
No 78
>PRK13621 psbV cytochrome c-550; Provisional
Probab=33.69 E-value=95 Score=24.40 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHHhccCCCCC---cccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccC
Q 026402 102 ADKVSNYIVGLQNEDGS---FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGC 169 (239)
Q Consensus 102 ~~~~~~~l~~~Q~~dGg---f~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~ 169 (239)
++.+++|++.-+..||. |...+. -...+++.+++....||+..-...+||+.
T Consensus 109 I~~LV~~iknPms~kg~~~~~~~~mp----------------s~~~LSdeEL~aIAaYLL~qA~~~~~Wg~ 163 (170)
T PRK13621 109 IAALVAYQRDPMSYDGSEESYGCRQV----------------PEDWMTDEELQNLAAFILRAAQKAPGWGT 163 (170)
T ss_pred HHHHHHHhhCCCCCCcccccccccCC----------------ccCCCCHHHHHHHHHHHHhhhhhccCCCC
Confidence 46778888888877763 222211 01345778899999999986666789975
No 79
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=29.83 E-value=3.7e+02 Score=23.32 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=35.8
Q ss_pred cHHHHHHHHHh-ccCCC-CCccCCC---CCC----CchhhHHHHHHHHHHhCCC--CC---CCHHHHHHHHHhccc-cCC
Q 026402 149 NVDKAVEYIVS-CKNLD-GGFGCTP---GGE----SHSGQIFCCVGALAIAGAL--HH---VDKDLLGWWLCERQV-KSG 213 (239)
Q Consensus 149 ~~~~~~~~l~~-~Q~~d-GGf~~~~---~~~----s~~~~T~~al~aL~~l~~~--~~---~~~~~~~~~L~~~Q~-~~G 213 (239)
..+++++||.+ +..++ |||-... +.. .+...-.+.+.+|+.+.+. ++ ...+++.+++.++.. +.|
T Consensus 77 ~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g 156 (384)
T cd00249 77 AAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHP 156 (384)
T ss_pred HHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCC
Confidence 34678999987 55556 9885432 111 2333333444444443321 11 124567778777664 456
Q ss_pred ccC
Q 026402 214 GLN 216 (239)
Q Consensus 214 Gf~ 216 (239)
|+-
T Consensus 157 ~~~ 159 (384)
T cd00249 157 GAF 159 (384)
T ss_pred ccc
Confidence 653
No 80
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=27.22 E-value=1.4e+02 Score=23.06 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccCCCCCc---ccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccC
Q 026402 102 ADKVSNYIVGLQNEDGSF---SGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGC 169 (239)
Q Consensus 102 ~~~~~~~l~~~Q~~dGgf---~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~ 169 (239)
++.+++|++.-+.-+|.- ...+. ....+++.+++....||+..-...+||+.
T Consensus 98 I~~Lv~~iknP~s~kG~~~~~~~~mp----------------~~~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 98 IQSLVAYQRDPMSYDGSEESYGCRPV----------------PEDWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHhhCCcccCcccccccccCC----------------cccCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 577888888888777632 11110 01345677899999999986656778975
No 81
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=26.36 E-value=90 Score=24.16 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=35.4
Q ss_pred hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (239)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 217 (239)
.+++.+++|+..-+..+|.=......++. ...+...++++...||+..-...+||++
T Consensus 96 d~I~~Lv~~iknP~s~kG~~~~~~~~mp~-------------~~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 96 DTIQSLVAYQRDPMSYDGSEESYGCRPVP-------------EDWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHHHhhCCcccCcccccccccCCc-------------ccCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 45789999999988877721000000110 0334556788999999876555667765
No 82
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.04 E-value=4.9e+02 Score=23.11 Aligned_cols=192 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDP 79 (239)
Q Consensus 1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~ 79 (239)
+++-.+++.++||++....+-....| ..+...+-..|..+|.. ++...+..++-+.+....||=|+--+...-
T Consensus 129 L~~~~k~~l~~wL~~~~~~~~~~nNW------~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~ 202 (361)
T PF10022_consen 129 LDEEEKENLVDWLKQIRGIKPPDNNW------LLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQF 202 (361)
T ss_pred CCHHHHHHHHHHHHhcCcCCCccchh------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCC
Q ss_pred chhHHHH----HHHHHHhcCCCCCCC----HHHHHHHHHhcc---CCCCCcccCCCCCCCcchhHHHHhHHHhhccCC--
Q 026402 80 HVLYTLS----AVQVLALFDKVDILD----ADKVSNYIVGLQ---NEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-- 146 (239)
Q Consensus 80 ~~~~T~~----al~~L~~l~~~~~~~----~~~~~~~l~~~Q---~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-- 146 (239)
|-...+. .+..+.+..+.+... ++++.+|..... .+||.+-.---....=..+...++.+.+.+.++
T Consensus 203 DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~~~GRSltYRfA~~a~~~~~a~~~~lp~~ 282 (361)
T PF10022_consen 203 DYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAPPFGRSLTYRFAAFAFLAAAALAGVLPEP 282 (361)
T ss_pred cchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCccccHHHHHHHHHHHHHHHHcCCCCcc
Q ss_pred -------hhcHHHHHHHHHhc---cCCCC----CccCCC----CCCCchhhHHHHHHHHHHhCCCCCCCH
Q 026402 147 -------KINVDKAVEYIVSC---KNLDG----GFGCTP----GGESHSGQIFCCVGALAIAGALHHVDK 198 (239)
Q Consensus 147 -------~~~~~~~~~~l~~~---Q~~dG----Gf~~~~----~~~s~~~~T~~al~aL~~l~~~~~~~~ 198 (239)
+....+.++|..+. -..|| ||.+.- ..-+.++.-|||..++..|+-...-++
T Consensus 283 ~~~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~Lp~dhpF 352 (361)
T PF10022_consen 283 LISPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGLPADHPF 352 (361)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcCCCCCcc
No 83
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=24.75 E-value=6.1e+02 Score=24.13 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHHHhccCC--CCCCCCCCC-----CCCchhHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHhccCCCC
Q 026402 56 DVISWILKCQDE--SGGFAGNIG-----HDPHVLYTLSAVQVLALFDKVDIL-----------DADKVSNYIVGLQNEDG 117 (239)
Q Consensus 56 ~~i~~l~~~q~~--dGgf~~~~~-----~~~~~~~T~~al~~L~~l~~~~~~-----------~~~~~~~~l~~~Q~~dG 117 (239)
.+++-|.+.... +||+.-++. ..|-+..|++....+..+++.... ..++.++|+.+..++.|
T Consensus 501 ~Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~G 580 (616)
T TIGR01577 501 KMAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLG 580 (616)
T ss_pred HHHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCC
Confidence 345555543322 566654432 245567888888888776653211 24567899999988888
Q ss_pred Cccc
Q 026402 118 SFSG 121 (239)
Q Consensus 118 gf~~ 121 (239)
-+..
T Consensus 581 ll~E 584 (616)
T TIGR01577 581 LLPE 584 (616)
T ss_pred CCcc
Confidence 8764
No 84
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=24.72 E-value=6.5e+02 Score=24.39 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccC--CCCC-------CCcchhHHHHhHHHhhccCC----hh
Q 026402 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD--IWGE-------VDTRFSYIAICCLSILQRLD----KI 148 (239)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~--~~~~-------~d~~~ty~al~~l~~l~~~~----~~ 148 (239)
...+..+.+|..++... ..++.++||.+.|.++|.|-.. .+++ .|... ..+.++..+.+.. ..
T Consensus 298 RD~a~~a~AL~~~G~~~--~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g--~~i~~~~~l~~~~~~~~~~ 373 (648)
T TIGR01535 298 RDLYQVANAFLAAGDVD--SALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETA--FPILLAYRLHRYDHAFYDK 373 (648)
T ss_pred hhHHHHHHHHHHCCCHH--HHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHH--HHHHHHHHHHHcCcHHHHH
Confidence 44555556666666432 3688999999999999987432 1222 23221 1222222222211 23
Q ss_pred cHHHHHHHHHhc
Q 026402 149 NVDKAVEYIVSC 160 (239)
Q Consensus 149 ~~~~~~~~l~~~ 160 (239)
.++++++||.+.
T Consensus 374 ~vk~aadfl~~~ 385 (648)
T TIGR01535 374 MLKPAADFIVKN 385 (648)
T ss_pred HHHHHHHHHHHc
Confidence 578999999985
No 85
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=24.51 E-value=77 Score=30.53 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCC---CC----CCchhHHHHHHHHHHhcCCCCC----CC
Q 026402 33 LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNI---GH----DPHVLYTLSAVQVLALFDKVDI----LD 101 (239)
Q Consensus 33 ~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~---~~----~~~~~~T~~al~~L~~l~~~~~----~~ 101 (239)
++..++++.+|..+|... ..++.++||.+.|.++|.|-... |. +-....|...+.++..+.+... .-
T Consensus 297 ~RD~a~~a~AL~~~G~~~--~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~~~~ 374 (648)
T TIGR01535 297 PRDLYQVANAFLAAGDVD--SALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFYDKM 374 (648)
T ss_pred hhhHHHHHHHHHHCCCHH--HHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHHHHH
Confidence 455799999999999754 47899999999999998874321 11 1112233333333333322111 12
Q ss_pred HHHHHHHHHhcc
Q 026402 102 ADKVSNYIVGLQ 113 (239)
Q Consensus 102 ~~~~~~~l~~~Q 113 (239)
++++++||.+.-
T Consensus 375 vk~aadfl~~~~ 386 (648)
T TIGR01535 375 LKPAADFIVKNG 386 (648)
T ss_pred HHHHHHHHHHcC
Confidence 688999999864
No 86
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.59 E-value=5.4e+02 Score=25.00 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=18.2
Q ss_pred hcHHHHHHHHHh-ccCCCCCccCCC
Q 026402 148 INVDKAVEYIVS-CKNLDGGFGCTP 171 (239)
Q Consensus 148 ~~~~~~~~~l~~-~Q~~dGGf~~~~ 171 (239)
...+..++||++ +..++|||-...
T Consensus 296 ~~a~~i~~~l~rel~sp~ggFyss~ 320 (667)
T COG1331 296 RAAEGILDYLLRELYSPEGGFYSSL 320 (667)
T ss_pred HHHHHHHHHHHHHhcCCCCceeecc
Confidence 356788999876 888999995543
Done!