Query 026402
Match_columns 239
No_of_seqs 147 out of 1390
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 12:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dss_B Geranylgeranyl transfer 100.0 4.6E-59 1.6E-63 402.1 24.6 233 3-235 17-249 (331)
2 3q7a_B Farnesyltransferase bet 100.0 6.1E-57 2.1E-61 401.8 19.4 232 3-236 60-335 (520)
3 1n4q_B Geranyltransferase type 100.0 5.6E-56 1.9E-60 387.6 19.2 230 3-236 19-281 (377)
4 3dra_B Geranylgeranyltransfera 100.0 1.2E-55 4E-60 385.0 18.6 233 1-236 1-306 (390)
5 2h6f_B Protein farnesyltransfe 100.0 2.3E-55 7.9E-60 390.4 20.8 231 3-235 72-308 (437)
6 3dss_B Geranylgeranyl transfer 100.0 3.4E-52 1.2E-56 359.2 24.1 233 3-235 65-298 (331)
7 2h6f_B Protein farnesyltransfe 100.0 2.1E-46 7.1E-51 332.9 20.0 232 4-235 121-370 (437)
8 1n4q_B Geranyltransferase type 100.0 1.5E-44 5.1E-49 315.5 22.0 231 3-235 66-329 (377)
9 3dra_B Geranylgeranyltransfera 100.0 1.9E-43 6.6E-48 308.1 20.5 231 4-235 53-357 (390)
10 3q7a_B Farnesyltransferase bet 100.0 1.3E-43 4.4E-48 316.2 16.1 232 4-235 109-418 (520)
11 2sqc_A Squalene-hopene cyclase 99.9 1.8E-26 6E-31 214.8 19.9 219 6-228 333-607 (631)
12 1w6k_A Lanosterol synthase; cy 99.9 3.8E-26 1.3E-30 215.1 15.3 221 6-227 411-701 (732)
13 1w6k_A Lanosterol synthase; cy 99.9 2E-21 6.9E-26 183.0 16.1 228 7-236 359-660 (732)
14 2sqc_A Squalene-hopene cyclase 99.9 6.3E-21 2.2E-25 177.5 19.2 229 6-236 283-564 (631)
15 1qqf_A Protein (complement C3D 99.8 1.8E-17 6.3E-22 139.5 15.6 162 54-217 40-259 (277)
16 2wy7_A Complement C3D fragment 99.7 3.9E-17 1.4E-21 139.6 14.9 162 54-217 56-275 (310)
17 1qqf_A Protein (complement C3D 99.7 9.9E-16 3.4E-20 128.9 15.3 173 8-189 42-272 (277)
18 2wy7_A Complement C3D fragment 99.6 3.7E-15 1.3E-19 127.3 15.1 175 8-191 58-290 (310)
19 1hzf_A Complement factor C4A; 99.6 5.6E-15 1.9E-19 129.1 13.2 164 53-217 92-345 (367)
20 1hzf_A Complement factor C4A; 99.5 1.3E-13 4.3E-18 120.5 14.5 177 6-190 93-359 (367)
21 2hr0_B Complement C3 alpha' ch 99.4 8E-12 2.8E-16 120.8 14.9 160 54-216 301-519 (915)
22 2pn5_A TEP1R, thioester-contai 99.3 1.2E-11 4.3E-16 123.6 15.6 179 36-216 849-1086(1325)
23 2hr0_B Complement C3 alpha' ch 99.3 7.2E-11 2.4E-15 114.2 14.7 174 8-190 303-534 (915)
24 4acq_A Alpha-2-macroglobulin; 99.2 1.7E-10 5.7E-15 116.0 14.3 203 7-217 986-1227(1451)
25 2pn5_A TEP1R, thioester-contai 99.1 7.7E-10 2.6E-14 110.8 13.7 174 8-190 876-1101(1325)
26 1r76_A Pectate lyase; A-helica 99.1 1.6E-10 5.5E-15 100.5 7.6 159 54-216 83-334 (408)
27 1r76_A Pectate lyase; A-helica 99.1 8.9E-11 3E-15 102.1 4.6 162 6-168 83-334 (408)
28 4fxk_B Complement C4-A alpha c 98.9 3.1E-08 1.1E-12 94.1 17.9 194 9-216 373-621 (767)
29 1gxm_A Pectate lyase; mechanis 98.9 2.4E-10 8.4E-15 96.7 2.6 153 56-210 35-251 (332)
30 2b39_A C3; thioester, immune d 98.9 5E-08 1.7E-12 99.6 17.9 191 11-217 1053-1267(1661)
31 1gxm_A Pectate lyase; mechanis 98.8 3.6E-10 1.2E-14 95.7 0.2 155 8-163 35-252 (332)
32 4acq_A Alpha-2-macroglobulin; 98.7 1.8E-07 6.3E-12 94.1 14.1 158 54-217 985-1159(1451)
33 3cu7_A Complement C5; Mg domai 98.6 4E-07 1.4E-11 93.1 13.9 198 6-217 1042-1286(1676)
34 3prx_B Cobra venom factor; imm 98.6 5.6E-09 1.9E-13 105.7 0.0 189 7-217 1026-1249(1642)
35 2bb6_A TCII, TC II, transcobal 98.6 4.9E-07 1.7E-11 79.0 11.4 132 36-188 139-282 (414)
36 2b39_A C3; thioester, immune d 98.3 8.8E-06 3E-10 83.2 14.7 141 56-210 1050-1214(1661)
37 4fxk_B Complement C4-A alpha c 98.3 8.9E-05 3.1E-09 70.3 19.7 90 32-121 338-440 (767)
38 2bb6_A TCII, TC II, transcobal 98.2 5.8E-06 2E-10 72.3 9.3 116 87-216 142-269 (414)
39 3cu7_A Complement C5; Mg domai 98.0 5.4E-05 1.8E-09 77.6 12.7 143 58-212 1053-1219(1676)
40 2pmv_A Gastric intrinsic facto 97.9 1.8E-05 6.1E-10 68.8 7.5 126 39-187 118-257 (399)
41 2pmv_A Gastric intrinsic facto 97.9 2.8E-05 9.4E-10 67.7 7.6 100 102-216 132-245 (399)
42 3prx_B Cobra venom factor; imm 97.4 2.6E-05 9E-10 79.3 0.0 107 54-160 1032-1162(1642)
43 3sdr_A Alpha-bisabolene syntha 96.2 0.0086 2.9E-07 56.9 7.2 99 7-113 57-163 (817)
44 3sdr_A Alpha-bisabolene syntha 96.0 0.098 3.3E-06 49.8 13.4 57 7-64 104-162 (817)
45 3s9v_A Abietadiene synthase, c 96.0 0.01 3.6E-07 56.1 6.8 95 7-112 34-135 (785)
46 3p5p_A Taxadiene synthase; cla 96.0 0.12 4.2E-06 48.8 13.7 57 7-64 56-114 (764)
47 3p5p_A Taxadiene synthase; cla 95.9 0.011 3.7E-07 55.9 6.4 100 6-113 10-115 (764)
48 3pya_A ENT-copalyl diphosphate 95.9 0.19 6.3E-06 47.2 14.4 57 7-64 53-111 (727)
49 3pya_A ENT-copalyl diphosphate 95.0 0.041 1.4E-06 51.6 6.8 96 6-112 11-111 (727)
50 3s9v_A Abietadiene synthase, c 94.0 0.058 2E-06 51.1 5.3 101 54-160 33-135 (785)
51 3k11_A Putative glycosyl hydro 83.1 8.6 0.00029 33.8 10.0 163 54-216 170-372 (445)
52 1wgn_A UBAP1, ubiquitin associ 51.7 20 0.00069 22.2 3.7 26 135-164 36-61 (63)
53 3pmm_A Putative cytoplasmic pr 48.8 39 0.0013 28.8 6.6 68 150-217 265-341 (382)
54 3k11_A Putative glycosyl hydro 48.6 48 0.0016 29.0 7.1 67 54-120 296-372 (445)
55 3pmm_A Putative cytoplasmic pr 43.8 53 0.0018 28.0 6.6 69 54-122 265-342 (382)
56 1nc5_A Hypothetical protein YT 42.9 1.5E+02 0.0051 24.8 13.0 66 150-215 243-324 (373)
57 4b2v_A S64; toxin, ICK; NMR {S 38.8 17 0.00056 18.5 1.5 18 210-227 4-21 (32)
58 2dna_A Unnamed protein product 37.5 40 0.0014 21.2 3.6 18 148-165 46-63 (67)
59 1vg5_A RSGI RUH-014, rhomboid 32.0 54 0.0018 20.9 3.6 26 135-164 46-71 (73)
60 2ip6_A PAPB, PEDB; immunity pr 31.9 47 0.0016 22.8 3.4 43 128-170 57-100 (112)
61 2crn_A Ubash3A protein; compac 31.8 50 0.0017 20.4 3.3 26 182-210 25-50 (64)
62 1wiv_A UBP14, ubiquitin-specif 31.5 58 0.002 20.7 3.7 26 182-211 45-70 (73)
63 2cpw_A CBL-interacting protein 30.8 44 0.0015 20.6 3.0 27 182-211 35-61 (64)
64 1wji_A Tudor domain containing 30.7 49 0.0017 20.4 3.2 25 183-211 26-50 (63)
65 1vej_A Riken cDNA 4931431F19; 29.4 63 0.0022 20.7 3.6 17 148-164 56-72 (74)
66 2ekk_A UBA domain from E3 ubiq 28.2 56 0.0019 18.5 2.9 22 182-208 25-46 (47)
67 2dah_A Ubiquilin-3; UBA domain 26.9 82 0.0028 18.7 3.6 25 183-211 27-51 (54)
68 4ae4_A Ubiquitin-associated pr 26.1 47 0.0016 23.3 2.8 61 5-65 35-115 (118)
69 2knz_A Ubiquilin-4; cytoplasm, 26.1 73 0.0025 18.7 3.3 24 182-209 28-51 (53)
70 3ren_A Glycosyl hydrolase, fam 25.7 1.5E+02 0.0053 24.9 6.4 77 102-178 248-336 (350)
71 3ren_A Glycosyl hydrolase, fam 24.8 91 0.0031 26.3 4.8 58 35-92 283-346 (350)
72 1whc_A RSGI RUH-027, UBA/UBX 3 24.2 80 0.0027 19.4 3.3 27 181-210 24-50 (64)
73 2dag_A Ubiquitin carboxyl-term 22.9 85 0.0029 19.9 3.3 26 182-210 25-50 (74)
74 2dak_A Ubiquitin carboxyl-term 22.6 53 0.0018 20.1 2.2 25 182-210 25-49 (63)
75 1fp3_A N-acyl-D-glucosamine 2- 21.2 2.4E+02 0.0082 23.5 6.9 22 149-170 83-107 (402)
No 1
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=4.6e-59 Score=402.12 Aligned_cols=233 Identities=56% Similarity=1.085 Sum_probs=222.7
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (239)
+|++++|++||+++.+....+.++..++++++.+||++.+|++|+..+.++++++++||++||++||||+..++.++|+.
T Consensus 17 ~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~ 96 (331)
T 3dss_B 17 TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLL 96 (331)
T ss_dssp SCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHH
T ss_pred hhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHH
Confidence 78999999999998666666777888899999999999999999987777899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (239)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~ 162 (239)
.||+|+++|.+++.++.++++++++||.++|++||||.+.+++++|+++||||+++|.+++.++.++++++++||++||+
T Consensus 97 ~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~ 176 (331)
T 3dss_B 97 YTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 176 (331)
T ss_dssp HHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCc
Confidence 99999999999998888999999999999999999999998899999999999999999999888899999999999999
Q ss_pred CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccC
Q 026402 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
+||||+..|+.++|+.+||||+++|.++++.+.++++++++||+++|+++|||++||+|++|+|||||++++|
T Consensus 177 ~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L 249 (331)
T 3dss_B 177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASL 249 (331)
T ss_dssp TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHH
T ss_pred CCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHH
Confidence 9999999999999999999999999999998888999999999999999999999999999999999999987
No 2
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=6.1e-57 Score=401.81 Aligned_cols=232 Identities=25% Similarity=0.425 Sum_probs=210.1
Q ss_pred cccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCC--CCC
Q 026402 3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNI--GHD 78 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~--~~~ 78 (239)
+|++++|++||+++... ...| ...+.+++|.+||++.+|.+||.. +...++++++||++||++||||+..+ +..
T Consensus 60 ~L~~~~Hi~yl~~~L~~LP~~y--~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~ 137 (520)
T 3q7a_B 60 GLRKQEHTQFLASSFFQLPGKF--VSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQI 137 (520)
T ss_dssp CCCHHHHHHHHHHHHSCBCGGG--GGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSC
T ss_pred ccCHHHHHHHHHHHhhhCChhh--hhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence 69999999999998743 2333 345789999999999999999953 44578899999999999999999999 899
Q ss_pred CchhHHHHHHHHHHhcCCC------CCCC--HHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcH
Q 026402 79 PHVLYTLSAVQVLALFDKV------DILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINV 150 (239)
Q Consensus 79 ~~~~~T~~al~~L~~l~~~------~~~~--~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~ 150 (239)
+|+..||+||++|.+++.. +.++ ++++++||.++|++||||.+..+++.|+++||||++++.+++.++.+++
T Consensus 138 ~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v 217 (520)
T 3q7a_B 138 PHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELL 217 (520)
T ss_dssp CCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHH
T ss_pred CcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999763 3567 8999999999999999999988899999999999999999999888899
Q ss_pred HHHHHHHHhccCCCCCccC-----------------------CCCCCCchhhHHHHHHHHHHhCCCC------CCCHHHH
Q 026402 151 DKAVEYIVSCKNLDGGFGC-----------------------TPGGESHSGQIFCCVGALAIAGALH------HVDKDLL 201 (239)
Q Consensus 151 ~~~~~~l~~~Q~~dGGf~~-----------------------~~~~~s~~~~T~~al~aL~~l~~~~------~~~~~~~ 201 (239)
+++++||++||++||||+. .|+.|+|+++|||||++|++|++++ ..+.+++
T Consensus 218 ~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l 297 (520)
T 3q7a_B 218 HNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAA 297 (520)
T ss_dssp TTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHH
T ss_pred HHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHH
Confidence 9999999999999999999 6799999999999999999999863 5789999
Q ss_pred HHHHHhccc---cCCccCCCCCCCCChhhhhhhhccCC
Q 026402 202 GWWLCERQV---KSGGLNGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 202 ~~~L~~~Q~---~~GGf~~~~~k~~D~c~s~~~~~~l~ 236 (239)
++||+.||. ++|||+|||||++|+|||||++++|.
T Consensus 298 ~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~ 335 (520)
T 3q7a_B 298 LRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAP 335 (520)
T ss_dssp HHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHH
T ss_pred HHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHH
Confidence 999999996 56999999999999999999999863
No 3
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=5.6e-56 Score=387.63 Aligned_cols=230 Identities=30% Similarity=0.522 Sum_probs=209.1
Q ss_pred cccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccC---------CCCCCC
Q 026402 3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD---------ESGGFA 72 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~---------~dGgf~ 72 (239)
+|++++|++||+++.+. +.+| ...++++++.+||++.+|++|+..+.++++++++||+++|+ ++|||+
T Consensus 19 ~l~~~~H~~y~~~~l~~lp~~~--~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~ 96 (377)
T 1n4q_B 19 DFLRDRHVRFFQRCLQVLPERY--SSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR 96 (377)
T ss_dssp CCCHHHHHHHHHHHHHEECGGG--GGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred ccCHHHHHHHHHHHhhcCCccc--cccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence 57899999999998874 3444 44578999999999999999998666679999999999999 689999
Q ss_pred CCCCC-----------------CCchhHHHHHHHHHHhcC-CCCCCCHHHHHHHHHhccCCCCCcccC-CCCCCCcchhH
Q 026402 73 GNIGH-----------------DPHVLYTLSAVQVLALFD-KVDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSY 133 (239)
Q Consensus 73 ~~~~~-----------------~~~~~~T~~al~~L~~l~-~~~~~~~~~~~~~l~~~Q~~dGgf~~~-~~~~~d~~~ty 133 (239)
.++.. .+|+..||+|+++|.+++ .++.++++++++||+++|++||||.+. .+++.|+++||
T Consensus 97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY 176 (377)
T 1n4q_B 97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176 (377)
T ss_dssp SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHH
T ss_pred CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHH
Confidence 98753 489999999999999997 467789999999999999999999987 57899999999
Q ss_pred HHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCC----CHHHHHHHHHhcc
Q 026402 134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ 209 (239)
Q Consensus 134 ~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~----~~~~~~~~L~~~Q 209 (239)
||++++.+++..+.++++++++||++||++||||+..|+.|||+.+||||+++|.++++.+.. +++++++||.+||
T Consensus 177 ~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ 256 (377)
T 1n4q_B 177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 256 (377)
T ss_dssp HHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC
Confidence 999999999988888999999999999999999999999999999999999999999976532 6899999999999
Q ss_pred ccCCccCCCCCCCCChhhhhhhhccCC
Q 026402 210 VKSGGLNGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 210 ~~~GGf~~~~~k~~D~c~s~~~~~~l~ 236 (239)
+|||+|||||++|+|||||++++|.
T Consensus 257 --~gGf~GR~nK~~D~CYSfWv~~~l~ 281 (377)
T 1n4q_B 257 --QNGYHGRPNKPVDTCYSFWVGATLK 281 (377)
T ss_dssp --SSSBCSSTTSCCCTTHHHHHHHHHH
T ss_pred --CCCcCCCCCcchhHHHHHHHHHHHH
Confidence 8999999999999999999999873
No 4
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.2e-55 Score=384.99 Aligned_cols=233 Identities=24% Similarity=0.348 Sum_probs=206.1
Q ss_pred CCcccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccCCC----CCCCC
Q 026402 1 MGELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDES----GGFAG 73 (239)
Q Consensus 1 ~~~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~~d----Ggf~~ 73 (239)
|.+|+++||++|++++.+. +..|. ..++++++.+||++.+|++|+.. .+.++++.++||++||.++ |||+.
T Consensus 1 ~~~l~~~kHiky~~~~L~~Lp~~~~--s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g 78 (390)
T 3dra_B 1 MNQLLINKHEKFFNRCLIGLPSTAQ--SEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRS 78 (390)
T ss_dssp -CCCCHHHHHHHHHHHHHCCCGGGG--GGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECS
T ss_pred CccccHHHHHHHHHHHHHhCCcchh--hcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCC
Confidence 7789999999999987653 23333 34789999999999999999986 3446889999999998653 99999
Q ss_pred CC-----C---CCCchhHHHHHHHHHHhcCCC--CCCCHHHHHHHHHhccC---C-CCCcccCC-----------CCCCC
Q 026402 74 NI-----G---HDPHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQN---E-DGSFSGDI-----------WGEVD 128 (239)
Q Consensus 74 ~~-----~---~~~~~~~T~~al~~L~~l~~~--~~~~~~~~~~~l~~~Q~---~-dGgf~~~~-----------~~~~d 128 (239)
.+ + ..+|+.+||+|+.+|.++++. +.+|++++++||.++|+ + ||||...+ .++.|
T Consensus 79 ~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D 158 (390)
T 3dra_B 79 THYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPD 158 (390)
T ss_dssp SGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCC
T ss_pred CccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcch
Confidence 85 4 579999999999999999874 77899999999999998 6 89999543 57999
Q ss_pred cchhHHHHhHHHhhccCC-------------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCC
Q 026402 129 TRFSYIAICCLSILQRLD-------------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH 195 (239)
Q Consensus 129 ~~~ty~al~~l~~l~~~~-------------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~ 195 (239)
+|++|||++++.+++.+. .++++++++||++||+.||||+..|+.|||+++|||||++|++|++. .
T Consensus 159 ~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~ 237 (390)
T 3dra_B 159 LRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-L 237 (390)
T ss_dssp HHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-G
T ss_pred HHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-c
Confidence 999999999999999876 57899999999999999999999999999999999999999999986 4
Q ss_pred CCHHHHHHHHHhccc----------------------------cCCccCCCCCCCCChhhhhhhhccCC
Q 026402 196 VDKDLLGWWLCERQV----------------------------KSGGLNGRPEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 196 ~~~~~~~~~L~~~Q~----------------------------~~GGf~~~~~k~~D~c~s~~~~~~l~ 236 (239)
.+++++++||++||. ++|||+|||||.+|+|||||++++|.
T Consensus 238 ~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~ 306 (390)
T 3dra_B 238 EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLY 306 (390)
T ss_dssp GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHH
Confidence 788999999999997 57999999999999999999999873
No 5
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=2.3e-55 Score=390.38 Aligned_cols=231 Identities=31% Similarity=0.526 Sum_probs=215.0
Q ss_pred cccHHHHHHHHHHc-ccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402 3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (239)
Q Consensus 3 ~~~~~~~~~yl~~~-q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (239)
++++++|++||+++ |+.+|+|.... .++++.+||++.+|.+|+.. +...++++++||+++|++||||+.++...+|
T Consensus 72 ~l~~~~hi~~l~~~lq~~~gg~~a~D--~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~ 149 (437)
T 2h6f_B 72 VLQREKHFHYLKRGLRQLTDAYECLD--ASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH 149 (437)
T ss_dssp CCCHHHHHHHHHHHTTEECGGGGGGT--TCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred cccHHHHHHHHHHcCCCCCCCccccc--CCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence 58899999999999 88999998653 45778899999999999964 3346889999999999999999999988999
Q ss_pred hhHHHHHHHHHHhcCCC---CCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHH
Q 026402 81 VLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157 (239)
Q Consensus 81 ~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l 157 (239)
+..|++|+.+|.+++.. +.++++++++||+++|++||||.+++++++|+++||+++++|.+++..+...++++++||
T Consensus 150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L 229 (437)
T 2h6f_B 150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229 (437)
T ss_dssp HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999863 678899999999999999999999988999999999999999999987777889999999
Q ss_pred HhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc-cCCccCCCCCCCCChhhhhhhhccC
Q 026402 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 158 ~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
++||++||||+..|+.+||+.+|||||++|.++++.+..+++++++||++||. ++|||++||+|.+|+|||||++++|
T Consensus 230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L 308 (437)
T 2h6f_B 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLL 308 (437)
T ss_dssp HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHH
T ss_pred HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999888899999999999998 7899999999999999999999986
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=3.4e-52 Score=359.23 Aligned_cols=233 Identities=21% Similarity=0.314 Sum_probs=222.0
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (239)
+++++++++||+++|++||||.....+++++..||.|+.+|.+++..+.++++++++||.++|++||||+..+..++|+.
T Consensus 65 ~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~ 144 (331)
T 3dss_B 65 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR 144 (331)
T ss_dssp GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred hhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchH
Confidence 57899999999999999999998777789999999999999999876667899999999999999999999888899999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (239)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~ 162 (239)
.||+|+.+|.+++..+.++++++++||.++|++||||+++|+.++|+.+|||++++|.+++.++.++++++++||+++|+
T Consensus 145 ~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~ 224 (331)
T 3dss_B 145 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224 (331)
T ss_dssp HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCC
Confidence 99999999999998888899999999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccC-CccCCCCCCCCChhhhhhhhccC
Q 026402 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~-GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
+||||+.+|++++|+++|||++++|.++++.+.++.+++++||++||+++ |||+.+|++.+|.+||||++++|
T Consensus 225 ~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~L 298 (331)
T 3dss_B 225 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGL 298 (331)
T ss_dssp TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHH
T ss_pred CCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999988899999999999999886 99999999999999999999876
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=2.1e-46 Score=332.88 Aligned_cols=232 Identities=19% Similarity=0.250 Sum_probs=214.2
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (239)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (239)
.+++++++||.++|++||||.....+.+++..||.||.+|.++|.. +.++++++++||+++|++||||+..+..+++
T Consensus 121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d 200 (437)
T 2h6f_B 121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVD 200 (437)
T ss_dssp HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBS
T ss_pred HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCcc
Confidence 4578999999999999999987666678999999999999999974 4568999999999999999999998888999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (239)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~ 160 (239)
+..||+|+.+|.+++..+...++++++||.++|++||||+++|+++++..+||||+++|.+++..+.++++++++||+++
T Consensus 201 ~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~r 280 (437)
T 2h6f_B 201 VRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSR 280 (437)
T ss_dssp HHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhc
Confidence 99999999999999887667789999999999999999999999999999999999999999998888999999999999
Q ss_pred cC-CCCCccCCCCCCCchhhHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHh-ccccCCccCCCCCCCCCh
Q 026402 161 KN-LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCE-RQVKSGGLNGRPEKLPDV 225 (239)
Q Consensus 161 Q~-~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~~L~~-~Q~~~GGf~~~~~k~~D~ 225 (239)
|. ++|||..+|++.+|++||||++++|.+|++. ..+|.+++.+||+. +|+++|||+.+|++.+|.
T Consensus 281 Q~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~ 360 (437)
T 2h6f_B 281 QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF 360 (437)
T ss_dssp BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred CCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCH
Confidence 98 7899999999999999999999999999753 14789999999997 789999999999999999
Q ss_pred hhhhhhhccC
Q 026402 226 GLLLLVGSFK 235 (239)
Q Consensus 226 c~s~~~~~~l 235 (239)
+|||+++++|
T Consensus 361 yHT~y~L~gL 370 (437)
T 2h6f_B 361 YHTCYCLSGL 370 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 8
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1.5e-44 Score=315.53 Aligned_cols=231 Identities=17% Similarity=0.246 Sum_probs=211.9
Q ss_pred cccHHHHHHHHHHccc---------CCCCcccccc-----------------ccchHHHHHHHHHHHHhhCCC-CCcCHH
Q 026402 3 ELAADKHVKYIISVEK---------KKDSFESVVM-----------------EHLRLNGAYWGLTTLDILGKL-DAVDEE 55 (239)
Q Consensus 3 ~~~~~~~~~yl~~~q~---------~dg~~~~~~~-----------------~~~~~~~~y~al~~l~ll~~~-~~~~~~ 55 (239)
.++++++++||.++|+ ++|||..+.. +++.+..||.||.+|.+++.. +.++++
T Consensus 66 ~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~ 145 (377)
T 1n4q_B 66 VVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKE 145 (377)
T ss_dssp GSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHH
T ss_pred ccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHH
Confidence 4679999999999999 5899975542 247799999999999999953 457899
Q ss_pred HHHHHHHhccCCCCCCCCC-CCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH
Q 026402 56 DVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI 134 (239)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~ 134 (239)
++++||+++|++||+|... ...+.++..||+|+.++.+++..+.++++++++||.+||+.||||+..|..+++..+|||
T Consensus 146 ~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~c 225 (377)
T 1n4q_B 146 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC 225 (377)
T ss_dssp HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHH
T ss_pred HHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHH
Confidence 9999999999999999986 567899999999999999999877889999999999999999999999999999999999
Q ss_pred HHhHHHhhccCChh----cHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc
Q 026402 135 AICCLSILQRLDKI----NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV 210 (239)
Q Consensus 135 al~~l~~l~~~~~~----~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~ 210 (239)
|+++|.+++..+.. +++++++||.+.| +|||.++|++.+|++|+||++++|.+|++.+.+|.+++.+||+.||+
T Consensus 226 AlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~ 303 (377)
T 1n4q_B 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD 303 (377)
T ss_dssp HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcC
Confidence 99999999976543 7899999999999 89999999999999999999999999998878999999999999999
Q ss_pred c-CCccCCCCCCCCChhhhhhhhccC
Q 026402 211 K-SGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 211 ~-~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
+ +|||+.+|++.+|.+|||+++++|
T Consensus 304 ~~~GGf~~~p~~~~D~~HT~~~LagL 329 (377)
T 1n4q_B 304 RLVGGFAKWPDSHPDALHAYFGICGL 329 (377)
T ss_dssp TTTCSBCSSTTSCCBHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCCCHHHHHHHHHHH
Confidence 8 999999999999999999999876
No 9
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.9e-43 Score=308.07 Aligned_cols=231 Identities=22% Similarity=0.292 Sum_probs=207.7
Q ss_pred ccHHHHHHHHHHcccCC----CCccccc-----c---ccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccC---
Q 026402 4 LAADKHVKYIISVEKKK----DSFESVV-----M---EHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD--- 66 (239)
Q Consensus 4 ~~~~~~~~yl~~~q~~d----g~~~~~~-----~---~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~--- 66 (239)
.++++.++||.++|.++ |||.... + +.+.+..||+||.+|.+|+.. ..++++++++||.++|+
T Consensus 53 ~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~ 132 (390)
T 3dra_B 53 QELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDG 132 (390)
T ss_dssp HHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSS
T ss_pred HHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCC
Confidence 35788999999998653 8887553 2 468899999999999999985 45799999999999999
Q ss_pred C-CCCCCCCC-----------CCCCchhHHHHHHHHHHhcCCCC-------------CCCHHHHHHHHHhccCCCCCccc
Q 026402 67 E-SGGFAGNI-----------GHDPHVLYTLSAVQVLALFDKVD-------------ILDADKVSNYIVGLQNEDGSFSG 121 (239)
Q Consensus 67 ~-dGgf~~~~-----------~~~~~~~~T~~al~~L~~l~~~~-------------~~~~~~~~~~l~~~Q~~dGgf~~ 121 (239)
+ ||||...+ +.+.++..||+|+.++.+|+... .++++++++||.+||+.||||+.
T Consensus 133 ~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~ 212 (390)
T 3dra_B 133 INKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSS 212 (390)
T ss_dssp TTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCS
T ss_pred CCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCC
Confidence 6 99999654 57899999999999999998766 68899999999999999999999
Q ss_pred CCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC----------------------------CCCCccCCCCC
Q 026402 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN----------------------------LDGGFGCTPGG 173 (239)
Q Consensus 122 ~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~----------------------------~dGGf~~~~~~ 173 (239)
.|+.|++..+||||+++|.+++.+ ..+.+++++||.++|. ++|||.++|++
T Consensus 213 ~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nK 291 (390)
T 3dra_B 213 TIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENK 291 (390)
T ss_dssp STTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTC
T ss_pred CCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCC
Confidence 999999999999999999999987 3688999999999997 47999999999
Q ss_pred CCchhhHHHHHHHHHHhCC--CCCCCHHHHHHHHHhc-ccc-CCccCCCCCCCCChhhhhhhhccC
Q 026402 174 ESHSGQIFCCVGALAIAGA--LHHVDKDLLGWWLCER-QVK-SGGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 174 ~s~~~~T~~al~aL~~l~~--~~~~~~~~~~~~L~~~-Q~~-~GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
.+|++|+||++++|.+|+. .+.+|.+++.+||+.| |.+ .|||+.+|++.+|.+|||.++++|
T Consensus 292 l~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagL 357 (390)
T 3dra_B 292 LSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASL 357 (390)
T ss_dssp CBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHH
Confidence 9999999999999999994 4678999999999998 565 899999999999999999999876
No 10
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=1.3e-43 Score=316.17 Aligned_cols=232 Identities=19% Similarity=0.227 Sum_probs=210.3
Q ss_pred ccHHHHHHHHHHcccCCCCccccc--cccchHHHHHHHHHHHHhhCCCC------CcC--HHHHHHHHHhccCCCCCCCC
Q 026402 4 LAADKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLD------AVD--EEDVISWILKCQDESGGFAG 73 (239)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~al~~l~ll~~~~------~~~--~~~~i~~l~~~q~~dGgf~~ 73 (239)
.+++++++||.++|+++|||..+. .+.+.+..||.||.+|.+++... .++ ++++++||+++|++||+|..
T Consensus 109 ~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g 188 (520)
T 3q7a_B 109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVV 188 (520)
T ss_dssp HHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence 467899999999999999999887 78899999999999999999742 245 88999999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCccc-----------------------CCCCCCCcc
Q 026402 74 NIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG-----------------------DIWGEVDTR 130 (239)
Q Consensus 74 ~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~-----------------------~~~~~~d~~ 130 (239)
....+.++..||+|+.+|.+++..+..+++++++||.+||+.||||+. .|+.|+|..
T Consensus 189 ~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgG 268 (520)
T 3q7a_B 189 CEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGG 268 (520)
T ss_dssp STTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHH
T ss_pred CCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchh
Confidence 877789999999999999999987777889999999999999999998 568899999
Q ss_pred hhHHHHhHHHhhccC------ChhcHHHHHHHHHhccC---CCCCccCCCCCCCchhhHHHHHHHHHHhCCC--------
Q 026402 131 FSYIAICCLSILQRL------DKINVDKAVEYIVSCKN---LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-------- 193 (239)
Q Consensus 131 ~ty~al~~l~~l~~~------~~~~~~~~~~~l~~~Q~---~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-------- 193 (239)
+|||++++|.+++.+ ...+.+++++||.++|. ++|||.+++++.+|++|+||+.++|.+|+..
T Consensus 269 yTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~ 348 (520)
T 3q7a_B 269 YTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRK 348 (520)
T ss_dssp HHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccc
Confidence 999999999999986 35789999999999996 4699999999999999999999999998753
Q ss_pred ------------------------CCCCHHHHHHHHH-hccccC---CccCCCCCCCCChhhhhhhhccC
Q 026402 194 ------------------------HHVDKDLLGWWLC-ERQVKS---GGLNGRPEKLPDVGLLLLVGSFK 235 (239)
Q Consensus 194 ------------------------~~~~~~~~~~~L~-~~Q~~~---GGf~~~~~k~~D~c~s~~~~~~l 235 (239)
..+|.+++.+||+ .||.+. |||+.+|+|.+|.+|||++++.|
T Consensus 349 ~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGL 418 (520)
T 3q7a_B 349 VKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGL 418 (520)
T ss_dssp C---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHH
Confidence 2368899999998 589887 99999999999999999999865
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.95 E-value=1.8e-26 Score=214.80 Aligned_cols=219 Identities=19% Similarity=0.202 Sum_probs=168.6
Q ss_pred HHHHHHHHHHcccCC-CC------------ccccc--cccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccC
Q 026402 6 ADKHVKYIISVEKKK-DS------------FESVV--MEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD 66 (239)
Q Consensus 6 ~~~~~~yl~~~q~~d-g~------------~~~~~--~~~~~~~~~y~al~~l~ll~~~~----~~~~~~~i~~l~~~q~ 66 (239)
++|+++||++.|..+ |. |.... ...++++.|.+++.+|..++..+ ....+++++||+++|+
T Consensus 333 ~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~ 412 (631)
T 2sqc_A 333 LVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS 412 (631)
T ss_dssp HHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcC
Confidence 679999999998643 33 32211 12367899999999999998742 1257789999999999
Q ss_pred CCCCCCCCCC-------------------CCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhccCCCCCcccCCCCC
Q 026402 67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE 126 (239)
Q Consensus 67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~ 126 (239)
+||||+.++. ..+++..|..++.+|..++.. ....++++++||.++|++||||.+.+
T Consensus 413 ~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~w--- 489 (631)
T 2sqc_A 413 SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW--- 489 (631)
T ss_dssp TTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSS---
T ss_pred CCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCC---
Confidence 9999976532 126778999999999888642 22347899999999999999997654
Q ss_pred CCcchhHHHHhHHHhhccC----ChhcHHHHHHHHHhccCCCCCccCCC----------CCCCchhhHHHHHHHHHHhCC
Q 026402 127 VDTRFSYIAICCLSILQRL----DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGA 192 (239)
Q Consensus 127 ~d~~~ty~al~~l~~l~~~----~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~s~~~~T~~al~aL~~l~~ 192 (239)
+++++|++..++..|... ....++++++||+++|++||||+..+ +.++++..|+|||.+|..++.
T Consensus 490 -g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~ 568 (631)
T 2sqc_A 490 -GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR 568 (631)
T ss_dssp -BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred -CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 355677655555444332 24578999999999999999997643 457899999999999999987
Q ss_pred CCCCCHHHHHHHHHhccccCCccCCCCCC---CCChhhh
Q 026402 193 LHHVDKDLLGWWLCERQVKSGGLNGRPEK---LPDVGLL 228 (239)
Q Consensus 193 ~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k---~~D~c~s 228 (239)
.+...++++++||.++|+++|||...... .+..||.
T Consensus 569 ~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl 607 (631)
T 2sqc_A 569 AESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYL 607 (631)
T ss_dssp SSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEE
T ss_pred CChHHHHHHHHHHHhccCCCCCcCCCCccccccccccee
Confidence 65556899999999999999999987654 5677765
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.94 E-value=3.8e-26 Score=215.12 Aligned_cols=221 Identities=16% Similarity=0.152 Sum_probs=170.5
Q ss_pred HHHHHHHHHHcccCC--------------CCcccccc--ccchHHHHHHHHHHHHhhCCC--------CCcCHHHHHHHH
Q 026402 6 ADKHVKYIISVEKKK--------------DSFESVVM--EHLRLNGAYWGLTTLDILGKL--------DAVDEEDVISWI 61 (239)
Q Consensus 6 ~~~~~~yl~~~q~~d--------------g~~~~~~~--~~~~~~~~y~al~~l~ll~~~--------~~~~~~~~i~~l 61 (239)
++++++||++.|.++ |+|..... ..+++..|.+++.+|..+... ....++++++||
T Consensus 411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL 490 (732)
T 1w6k_A 411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL 490 (732)
T ss_dssp HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 479999999999755 88875432 246888899999999877421 122468899999
Q ss_pred HhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCC----C----CCCHHHHHHHHHhc
Q 026402 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV----D----ILDADKVSNYIVGL 112 (239)
Q Consensus 62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~----~----~~~~~~~~~~l~~~ 112 (239)
+++|++||||+.+.. ..+++..|.+++.+|..++.. . ...++++++||.++
T Consensus 491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~ 570 (732)
T 1w6k_A 491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 570 (732)
T ss_dssp HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence 999999999975432 124667888999988876531 1 12378999999999
Q ss_pred cCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC-h----hcHHHHHHHHHhccCCCCCccCC----------CCCCCch
Q 026402 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-K----INVDKAVEYIVSCKNLDGGFGCT----------PGGESHS 177 (239)
Q Consensus 113 Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-~----~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~ 177 (239)
|++||||.+.++ ..++..|++++.+|..++... . ..++++++||+++|++||||+.. ++.++++
T Consensus 571 Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v 649 (732)
T 1w6k_A 571 QRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI 649 (732)
T ss_dssp SCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred cCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence 999999987653 234455667888888887643 1 46899999999999999999864 3557899
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCC--CCCCChhh
Q 026402 178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGL 227 (239)
Q Consensus 178 ~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~--~k~~D~c~ 227 (239)
..|.||+.+|..++..+..+++++++||.++|+++|||...+ +..++.||
T Consensus 650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~ 701 (732)
T 1w6k_A 650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA 701 (732)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhh
Confidence 999999999988887655568899999999999999999665 33566776
No 13
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.87 E-value=2e-21 Score=183.00 Aligned_cols=228 Identities=13% Similarity=0.089 Sum_probs=164.6
Q ss_pred HHHHHHHHHc--ccCCCCccccccccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccCCC------------
Q 026402 7 DKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDES------------ 68 (239)
Q Consensus 7 ~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~----~~~~~~~i~~l~~~q~~d------------ 68 (239)
.+|++.|.+. ..+||.+. ..-..+.++.|-+++.+|.-.|... ....+++++||+++|..+
T Consensus 359 ~~~l~~l~~~l~~~~dG~~~-q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~ 437 (732)
T 1w6k_A 359 QEHVSRIPDYLWMGLDGMKM-QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQM 437 (732)
T ss_dssp HHHHHTSGGGEEEETTEEEE-CSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCC
T ss_pred HHHHHHHHHhheeCCCCcee-CCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCC
Confidence 4556665554 34666432 1111267888999999998887532 124678999999999766
Q ss_pred --CCCCCCCC--CCCchhHHHHHHHHHHhcCCCC-----CC---CHHHHHHHHHhccCCCCCcccCCC------------
Q 026402 69 --GGFAGNIG--HDPHVLYTLSAVQVLALFDKVD-----IL---DADKVSNYIVGLQNEDGSFSGDIW------------ 124 (239)
Q Consensus 69 --Ggf~~~~~--~~~~~~~T~~al~~L~~l~~~~-----~~---~~~~~~~~l~~~Q~~dGgf~~~~~------------ 124 (239)
|||+.... ..+++..|..++.+|..+.... .+ .++++++||.++|++||||.....
T Consensus 438 ~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~ 517 (732)
T 1w6k_A 438 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNP 517 (732)
T ss_dssp CTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCC
T ss_pred CCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcc
Confidence 89887643 4578999999999988774321 22 358899999999999999963210
Q ss_pred ----CC-----CCcchhHHHHhHHHhhccC--------ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHH
Q 026402 125 ----GE-----VDTRFSYIAICCLSILQRL--------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL 187 (239)
Q Consensus 125 ----~~-----~d~~~ty~al~~l~~l~~~--------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL 187 (239)
+. +.+..|..++.+|..++.. ....++++++||+++|++||||....+ ..+.+.|++++.+|
T Consensus 518 ~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL 596 (732)
T 1w6k_A 518 SEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAF 596 (732)
T ss_dssp CSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHH
T ss_pred hhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHH
Confidence 11 1122355566667666542 134689999999999999999987654 35667899999999
Q ss_pred HHhCCCCC-----CCHHHHHHHHHhccccCCccCCC----------CCCCCChhhhhhhhccCC
Q 026402 188 AIAGALHH-----VDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 188 ~~l~~~~~-----~~~~~~~~~L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l~ 236 (239)
..++.... ..++++++||+++|+++|||+.. +.+.+|++.|.|++-+|.
T Consensus 597 ~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl 660 (732)
T 1w6k_A 597 ACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLM 660 (732)
T ss_dssp HHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHH
T ss_pred HHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99987432 34789999999999999999864 356789999999988774
No 14
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.87 E-value=6.3e-21 Score=177.45 Aligned_cols=229 Identities=17% Similarity=0.044 Sum_probs=166.9
Q ss_pred HHHHHHHHHHcc--cCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccCCC-------------C
Q 026402 6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDES-------------G 69 (239)
Q Consensus 6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~~d-------------G 69 (239)
.++|++.|.+.. .+||++..... .+.+|.|.+++.+|..+|... ....+++++||.++|..+ |
T Consensus 283 ~~~~~~~~~~~~~~~~dGg~~~~~~-~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~G 361 (631)
T 2sqc_A 283 FIKGWEGLELYGVELDYGGWMFQAS-ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPG 361 (631)
T ss_dssp HHHHHHGGGGGEEECTTSCEEECSS-CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCC
T ss_pred HHHHHHHHHhceEEcCCCceeeCCC-CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCC
Confidence 345666666554 46766543332 377999999999999999753 336889999999998643 4
Q ss_pred CCCCC--CCCCCchhHHHHHHHHHHhcCCCC----CCCHHHHHHHHHhccCCCCCcccCCC-------------------
Q 026402 70 GFAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIW------------------- 124 (239)
Q Consensus 70 gf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGgf~~~~~------------------- 124 (239)
||+.. +...+++..|..++.+|..++... ...++++++||.++|++||||+....
T Consensus 362 gW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~ 441 (631)
T 2sqc_A 362 GFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT 441 (631)
T ss_dssp CBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSS
T ss_pred CCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCccc
Confidence 54432 234588999999999998877532 11367899999999999999964211
Q ss_pred CCCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC-CCCHHHHH
Q 026402 125 GEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH-HVDKDLLG 202 (239)
Q Consensus 125 ~~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~-~~~~~~~~ 202 (239)
..+++..|..++.+|..++.. ....++++++||+++|++||||....+ ..+.+.|..++.+|..++... ...+++++
T Consensus 442 d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav 520 (631)
T 2sqc_A 442 DPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKAL 520 (631)
T ss_dssp CCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 013444566677777776642 235689999999999999999965543 345677888888888887532 34579999
Q ss_pred HHHHhccccCCccCCCC----------CCCCChhhhhhhhccCC
Q 026402 203 WWLCERQVKSGGLNGRP----------EKLPDVGLLLLVGSFKL 236 (239)
Q Consensus 203 ~~L~~~Q~~~GGf~~~~----------~k~~D~c~s~~~~~~l~ 236 (239)
+||+++|+++|||+..+ ...+|+..|+|++.+|.
T Consensus 521 ~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~ 564 (631)
T 2sqc_A 521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALI 564 (631)
T ss_dssp HHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999999997543 34678999999998764
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.76 E-value=1.8e-17 Score=139.50 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=119.6
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCCCC----
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG---- 125 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~~---- 125 (239)
+++++++++++|++||||+.+++.+++.+.|.+++.+|..+.....++ ++++++||.+ .|++||+|.+...-
T Consensus 40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~ 119 (277)
T 1qqf_A 40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE 119 (277)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence 555667799999999999999998999999999999999887654444 4689999996 99999999875321
Q ss_pred ---------CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCC--------------------------
Q 026402 126 ---------EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL-------------------------- 163 (239)
Q Consensus 126 ---------~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~-------------------------- 163 (239)
++++..|..++.+|...+.. ....++++++||.++++.
T Consensus 120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~ 199 (277)
T 1qqf_A 120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLT 199 (277)
T ss_dssp GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 11233455555555444321 134678999999998764
Q ss_pred -------CCCccCCCCCC-CchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402 164 -------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (239)
Q Consensus 164 -------dGGf~~~~~~~-s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 217 (239)
+|++-..++.. .+...|.|+|.+|..++. ..++.++++||.++|+++|||..
T Consensus 200 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s 259 (277)
T 1qqf_A 200 KFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS 259 (277)
T ss_dssp HHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC
T ss_pred HHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec
Confidence 44443333321 256788899888777654 46789999999999999999985
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.74 E-value=3.9e-17 Score=139.63 Aligned_cols=162 Identities=19% Similarity=0.157 Sum_probs=119.5
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCCCC----
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG---- 125 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~~---- 125 (239)
+++++++++++|++||||+.+++.+++.+.|.+++.+|..+.....++ ++++++||.+ .|++||+|.+...-
T Consensus 56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~ 135 (310)
T 2wy7_A 56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE 135 (310)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHh
Confidence 556777799999999999999988999999999999999887654444 4689999996 99999999875321
Q ss_pred ---------CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCC--------------------------
Q 026402 126 ---------EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL-------------------------- 163 (239)
Q Consensus 126 ---------~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~-------------------------- 163 (239)
++++..|..++.+|...+.. ....++++++||.++|+.
T Consensus 136 ~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~ 215 (310)
T 2wy7_A 136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN 215 (310)
T ss_dssp GGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 11233455555555444321 134678999999998764
Q ss_pred -------CCCccCCCCCC-CchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402 164 -------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (239)
Q Consensus 164 -------dGGf~~~~~~~-s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 217 (239)
+|++-..++.. .+...|.|||.+|...+. ..++.++++||.++|+++|||..
T Consensus 216 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s 275 (310)
T 2wy7_A 216 KFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS 275 (310)
T ss_dssp HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC
T ss_pred HHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec
Confidence 34443333321 266789999988877764 46789999999999999999974
No 17
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.68 E-value=9.9e-16 Score=128.88 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=122.0
Q ss_pred HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCc---CHHHHHHHHHh-ccCCCCCCCCCCCC------
Q 026402 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAV---DEEDVISWILK-CQDESGGFAGNIGH------ 77 (239)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~---~~~~~i~~l~~-~q~~dGgf~~~~~~------ 77 (239)
+.++.+.+.|++||||..|..+++..+.|-+++.+|..+.....+ .++++++||.+ .|++||+|......
T Consensus 42 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~ 121 (277)
T 1qqf_A 42 KGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMI 121 (277)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhc
Confidence 344448889999999999988888999999999999999853222 46789999996 99999999865421
Q ss_pred -------CCchhHHHHHHHHHHhcCC-----CC--CCCHHHHHHHHHhccCC----------------------------
Q 026402 78 -------DPHVLYTLSAVQVLALFDK-----VD--ILDADKVSNYIVGLQNE---------------------------- 115 (239)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~-----~~--~~~~~~~~~~l~~~Q~~---------------------------- 115 (239)
++++..|.+++.+|...+. .. ...++++++||.+++++
T Consensus 122 g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l 201 (277)
T 1qqf_A 122 GGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKF 201 (277)
T ss_dssp GGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHH
T ss_pred CCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 2235567777777765421 11 22467899999998764
Q ss_pred -----CCCcccCCCCC-CCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHH
Q 026402 116 -----DGSFSGDIWGE-VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (239)
Q Consensus 116 -----dGgf~~~~~~~-~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~ 189 (239)
+|.|...+... .++..|.+++.++...+. ....+++++||.+.|+++|||.. +..|..||-||+-
T Consensus 202 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~ 272 (277)
T 1qqf_A 202 LNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQATFMVFQALAQ 272 (277)
T ss_dssp HHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HHHHHHHHHHHHH
T ss_pred HHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------chHHHHHHHHHHH
Confidence 33343322210 134455555555555544 35789999999999999999974 3568888877764
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.64 E-value=3.7e-15 Score=127.34 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=123.0
Q ss_pred HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCc---CHHHHHHHHHh-ccCCCCCCCCCCCC------
Q 026402 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAV---DEEDVISWILK-CQDESGGFAGNIGH------ 77 (239)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~---~~~~~i~~l~~-~q~~dGgf~~~~~~------ 77 (239)
+.++.+.+.|++||||..|..+++..+.|-+++.+|..+.....+ .++++++||.+ .|++||+|....+.
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~ 137 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI 137 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhc
Confidence 444458899999999998887788999999999999998853222 46789999996 99999999865431
Q ss_pred -------CCchhHHHHHHHHHHhcCC-----CC--CCCHHHHHHHHHhccCC----------------------------
Q 026402 78 -------DPHVLYTLSAVQVLALFDK-----VD--ILDADKVSNYIVGLQNE---------------------------- 115 (239)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~-----~~--~~~~~~~~~~l~~~Q~~---------------------------- 115 (239)
++++..|.+++.+|...+. .. ...++++++||.++|++
T Consensus 138 g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l 217 (310)
T 2wy7_A 138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF 217 (310)
T ss_dssp GGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2335567777777765522 11 12467899999998764
Q ss_pred -----CCCcccCCCC-CCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHH
Q 026402 116 -----DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (239)
Q Consensus 116 -----dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~ 189 (239)
+|.|...+.. ..++..|.+++.++...+. ...++++++||++.|+++|||.. ...|..+|.||+.
T Consensus 218 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~ 288 (310)
T 2wy7_A 218 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ 288 (310)
T ss_dssp HHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHHHH
T ss_pred HHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHHHH
Confidence 2333322221 0134456556665555554 35789999999999999999964 3568888888776
Q ss_pred hC
Q 026402 190 AG 191 (239)
Q Consensus 190 l~ 191 (239)
..
T Consensus 289 y~ 290 (310)
T 2wy7_A 289 YQ 290 (310)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.61 E-value=5.6e-15 Score=129.08 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=115.8
Q ss_pred CHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHhccCCCCCcccCCCC----
Q 026402 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIWG---- 125 (239)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~~~---- 125 (239)
.++++++||+++|++||||+.+++..++.+.|.+++.+|..+...-.++ ++++++||.+.|++||+|.+....
T Consensus 92 ~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~ 171 (367)
T 1hzf_A 92 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRS 171 (367)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccccccccc
Confidence 4667899999999999999999887888999999999998776432333 688999999999999999875221
Q ss_pred --------CCCcchhHHHHhHHHhhccC------------ChhcHHHHHHHHHhc--cC---------------------
Q 026402 126 --------EVDTRFSYIAICCLSILQRL------------DKINVDKAVEYIVSC--KN--------------------- 162 (239)
Q Consensus 126 --------~~d~~~ty~al~~l~~l~~~------------~~~~~~~~~~~l~~~--Q~--------------------- 162 (239)
++++..|.+++.+|...+.. ....++++++||.+. ++
T Consensus 172 ~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~ 251 (367)
T 1hzf_A 172 MQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPA 251 (367)
T ss_dssp GGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCH
T ss_pred ccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcH
Confidence 12344556666666544421 123578889998765 21
Q ss_pred ---------------CCCC---ccCCC---------------------CCC-CchhhHHHHHHHHHHhCCCCCCCHHHHH
Q 026402 163 ---------------LDGG---FGCTP---------------------GGE-SHSGQIFCCVGALAIAGALHHVDKDLLG 202 (239)
Q Consensus 163 ---------------~dGG---f~~~~---------------------~~~-s~~~~T~~al~aL~~l~~~~~~~~~~~~ 202 (239)
.+|+ |.... ... .++..|.|+|.+|...+. +.....+.+
T Consensus 252 ~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv 330 (367)
T 1hzf_A 252 DLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMADQAS 330 (367)
T ss_dssp HHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhHHHH
Confidence 1444 54321 012 267889999988766542 334578899
Q ss_pred HHHHhccccCCccCC
Q 026402 203 WWLCERQVKSGGLNG 217 (239)
Q Consensus 203 ~~L~~~Q~~~GGf~~ 217 (239)
+||.+.|+.+|||..
T Consensus 331 ~WL~~qrn~~Ggw~s 345 (367)
T 1hzf_A 331 AWLTRQGSFQGGFRS 345 (367)
T ss_dssp HHHHHHTTSTTCSCS
T ss_pred HHHHhCcCCCCCccc
Confidence 999999999999973
No 20
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.53 E-value=1.3e-13 Score=120.48 Aligned_cols=177 Identities=17% Similarity=0.167 Sum_probs=118.9
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCC-----
Q 026402 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH----- 77 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~----- 77 (239)
+++++++|.+.|++||||..|..+..+.+.|.+++..|..++.. +....+++++||.+.|++||+|......
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 45778899999999999998877677889999999999888743 2235788999999999999999875321
Q ss_pred -------CCchhHHHHHHHHHHhcCCC--C----------CCCHHHHHHHHHhc--cC----------------------
Q 026402 78 -------DPHVLYTLSAVQVLALFDKV--D----------ILDADKVSNYIVGL--QN---------------------- 114 (239)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~~--~----------~~~~~~~~~~l~~~--Q~---------------------- 114 (239)
++.+..|.+++.+|...+.. + ...++++++||.+. ++
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~ 252 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPAD 252 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHH
T ss_pred cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHH
Confidence 23466777888887654421 1 11357788888665 21
Q ss_pred --------------CCCC---cccCCC---------------------CC-CCcchhHHHHhHHHhhccCChhcHHHHHH
Q 026402 115 --------------EDGS---FSGDIW---------------------GE-VDTRFSYIAICCLSILQRLDKINVDKAVE 155 (239)
Q Consensus 115 --------------~dGg---f~~~~~---------------------~~-~d~~~ty~al~~l~~l~~~~~~~~~~~~~ 155 (239)
.+|+ |..... .. .++..|.+++.++...+. +....+++++
T Consensus 253 ~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv~ 331 (367)
T 1hzf_A 253 LRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMADQASA 331 (367)
T ss_dssp HHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhHHHHH
Confidence 1333 322100 00 134445445555433322 2346789999
Q ss_pred HHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHh
Q 026402 156 YIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (239)
Q Consensus 156 ~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l 190 (239)
||.+.|+++|||+. ...|..||-||+..
T Consensus 332 WL~~qrn~~Ggw~s-------TqdTvvAL~AL~~y 359 (367)
T 1hzf_A 332 WLTRQGSFQGGFRS-------TQDTVIALDALSAY 359 (367)
T ss_dssp HHHHHTTSTTCSCS-------HHHHHHHHHHHHHH
T ss_pred HHHhCcCCCCCccc-------HHHHHHHHHHHHHH
Confidence 99999999999964 25688888777654
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.36 E-value=8e-12 Score=120.77 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=113.9
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCCC-----
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW----- 124 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~----- 124 (239)
+++++++++++|++||||+++++.+++.+.|.+++..|..+.....++ ++++++||.+ .|.+||+|.....
T Consensus 301 i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~ 380 (915)
T 2hr0_B 301 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE 380 (915)
T ss_dssp HHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSC
T ss_pred HHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchh
Confidence 455777899999999999999988899999999999998876544444 5789999995 9999999975421
Q ss_pred ---C-----CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCC--------------------------
Q 026402 125 ---G-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL-------------------------- 163 (239)
Q Consensus 125 ---~-----~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~-------------------------- 163 (239)
+ ++++..|..++.+|...+.. ....++++++||.+.+..
T Consensus 381 m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~ 460 (915)
T 2hr0_B 381 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN 460 (915)
T ss_dssp CCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred hcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 0 12333444556666555432 123567888898876433
Q ss_pred -------CCC-ccCCCCC-CCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccC
Q 026402 164 -------DGG-FGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (239)
Q Consensus 164 -------dGG-f~~~~~~-~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~ 216 (239)
+|. |.. ++. ..+...|.|||.+|...+. .....+.++||.+.|+.+|||.
T Consensus 461 ~L~~~~~~~~~w~~-~~~~~~~ve~TayaLlall~~~~--~~~~~~~v~wL~~qq~~~Ggw~ 519 (915)
T 2hr0_B 461 KFLTTAKDKNRWED-PGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYG 519 (915)
T ss_dssp HHHHTSBTTTBCCC-SSCHHHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHTCCCSSSSCC
T ss_pred HHHhhccCCCCCCC-CCCCccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHhcccCCCCcc
Confidence 222 322 111 1256788999988877765 3458899999999999999997
No 22
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=1.2e-11 Score=123.63 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=120.4
Q ss_pred HHHHHHHHHhhCCCCCc-------CHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCC-CC---HHH
Q 026402 36 AYWGLTTLDILGKLDAV-------DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD---ADK 104 (239)
Q Consensus 36 ~y~al~~l~ll~~~~~~-------~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~---~~~ 104 (239)
..++..-|.-.++..+. ..++++++++++|++||||++++++.++.+.|.+++.+|..+..... ++ .++
T Consensus 849 ~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~ 928 (1325)
T 2pn5_A 849 NILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEK 928 (1325)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHH
Confidence 34444555544543311 24556677899999999999999999999999999999998865443 44 578
Q ss_pred HHHHHHhccCCCCCcccCCC-------CCCCcchhHHH--HhHHHhhccCC---hhcHHHHHHHHHhccCC-CCCccCC-
Q 026402 105 VSNYIVGLQNEDGSFSGDIW-------GEVDTRFSYIA--ICCLSILQRLD---KINVDKAVEYIVSCKNL-DGGFGCT- 170 (239)
Q Consensus 105 ~~~~l~~~Q~~dGgf~~~~~-------~~~d~~~ty~a--l~~l~~l~~~~---~~~~~~~~~~l~~~Q~~-dGGf~~~- 170 (239)
+++||.+.|.+||+|.+... +..+.+.+|.+ +.+|...+... ...++++++||.++|+. +++|+..
T Consensus 929 a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~ 1008 (1325)
T 2pn5_A 929 ALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSI 1008 (1325)
T ss_dssp HHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHH
Confidence 99999999999999976421 12223333333 33332222221 23577888999887765 5655211
Q ss_pred ---------------------------C-------CCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccC
Q 026402 171 ---------------------------P-------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN 216 (239)
Q Consensus 171 ---------------------------~-------~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~ 216 (239)
. ...++...|.|||.+|...+. .....+.++||++.|+.+|||.
T Consensus 1009 ~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~ 1086 (1325)
T 2pn5_A 1009 ATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFP 1086 (1325)
T ss_dssp HHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCS
T ss_pred HHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCcc
Confidence 0 113466788888877766553 3346788999999999899997
No 23
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.25 E-value=7.2e-11 Score=114.16 Aligned_cols=174 Identities=15% Similarity=0.136 Sum_probs=117.7
Q ss_pred HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHh-ccCCCCCCCCCCCC------
Q 026402 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILK-CQDESGGFAGNIGH------ 77 (239)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~---~~~~~~i~~l~~-~q~~dGgf~~~~~~------ 77 (239)
+.++.+.+.|++||||..|...++..|.|-+++..|..+..... ...+++++||.+ .|++||+|......
T Consensus 303 ~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~ 382 (915)
T 2hr0_B 303 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI 382 (915)
T ss_dssp HHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCC
T ss_pred HHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhc
Confidence 44555778999999999998878899999999999998874322 247889999995 99999999754221
Q ss_pred -------CCchhHHHHHHHHHHhcCCC-----CC--CCHHHHHHHHHhccCC----------------------------
Q 026402 78 -------DPHVLYTLSAVQVLALFDKV-----DI--LDADKVSNYIVGLQNE---------------------------- 115 (239)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~~-----~~--~~~~~~~~~l~~~Q~~---------------------------- 115 (239)
++++..|.+++.+|...+.. .. ..++++++||.+.+..
T Consensus 383 gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L 462 (915)
T 2hr0_B 383 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF 462 (915)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 13455677778877766442 11 1256788888887543
Q ss_pred -----CCCcccCCCC-CCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHH
Q 026402 116 -----DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (239)
Q Consensus 116 -----dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~ 189 (239)
+|.|...+.. ..++..|.+++.+|...+.. ....++++||++.|+++|||.. ...|..||-||+.
T Consensus 463 ~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~S-------TQdT~~Al~AL~~ 533 (915)
T 2hr0_B 463 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ 533 (915)
T ss_dssp HHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCS-------HHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc-------hhhHHHHHHHHHH
Confidence 2221111111 01344555566665555543 3578899999999999999964 2457778877765
Q ss_pred h
Q 026402 190 A 190 (239)
Q Consensus 190 l 190 (239)
.
T Consensus 534 y 534 (915)
T 2hr0_B 534 Y 534 (915)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.19 E-value=1.7e-10 Score=116.00 Aligned_cols=203 Identities=9% Similarity=0.058 Sum_probs=132.8
Q ss_pred HHHHHHHHHcccCCCCcccccc----ccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCC----
Q 026402 7 DKHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI---- 75 (239)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~~----~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~---- 75 (239)
+++++.+.+.|++||+|..|.. ++...|.|-|++..|..+... ++...+++++||++.|++||+|....
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 4667778889999999998853 457899999999999988753 23358889999999999999997431
Q ss_pred -----CCCCchhHHHHHHHHHHhcCCCC-CCCHHHHHHHHHhccCC--CCCcccCCCCCCCcchhHHHHhHHHhhccCCh
Q 026402 76 -----GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNE--DGSFSGDIWGEVDTRFSYIAICCLSILQRLDK 147 (239)
Q Consensus 76 -----~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~--dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~ 147 (239)
+.++++..|.+++.+|...+... ...++++++||++.... +|.- ..+......+..+|.+.+. .
T Consensus 1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~~------~~~~y~~AllAyAlal~g~--~ 1137 (1451)
T 4acq_A 1066 NAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGDH------GSHVYTKALLAYAFALAGN--Q 1137 (1451)
T ss_dssp GGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSCS------SSTHHHHHHHHHHHHHHTC--H
T ss_pred hhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccccc------cCChHHHHHHHHHHHhcCC--h
Confidence 12356778999999988776422 22367999999876211 1110 0112112222333445554 2
Q ss_pred hcHHHHHHHHHhccCCCCC---ccCCCC-------------CCCchhhHHHHHHHHHHhCCC----CCCCHHHHHHHHHh
Q 026402 148 INVDKAVEYIVSCKNLDGG---FGCTPG-------------GESHSGQIFCCVGALAIAGAL----HHVDKDLLGWWLCE 207 (239)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dGG---f~~~~~-------------~~s~~~~T~~al~aL~~l~~~----~~~~~~~~~~~L~~ 207 (239)
...+.+++=|.+....+|| |+.... ...+...|.|||.+|..++.. +.....+.++||.+
T Consensus 1138 ~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~ 1217 (1451)
T 4acq_A 1138 DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITK 1217 (1451)
T ss_dssp HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTT
T ss_pred hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 2334466666666555666 543211 123567899999777665421 12235678999999
Q ss_pred ccccCCccCC
Q 026402 208 RQVKSGGLNG 217 (239)
Q Consensus 208 ~Q~~~GGf~~ 217 (239)
.|+..|||..
T Consensus 1218 qr~~~Ggf~S 1227 (1451)
T 4acq_A 1218 QQNAQGGFSS 1227 (1451)
T ss_dssp CCCTTSCCSS
T ss_pred cCCCCCCccc
Confidence 9999999973
No 25
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.09 E-value=7.7e-10 Score=110.77 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=114.7
Q ss_pred HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccCCCCCCCCCCC-------
Q 026402 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDESGGFAGNIG------- 76 (239)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~----~~~~~~~i~~l~~~q~~dGgf~~~~~------- 76 (239)
++++.+.++|++||||..|..+++..|.|.+++.+|..+.... ....+++++||.+.|++||.|.....
T Consensus 876 ~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~ 955 (1325)
T 2pn5_A 876 QGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQ 955 (1325)
T ss_dssp HHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHH
T ss_pred HHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhc
Confidence 4444558899999999999888899999999999999886432 12467899999999999999865421
Q ss_pred -C-CCchhHHHHHHHHHHhcCCCC---CCCHHHHHHHHHhccCC-CCCcccC-----------C----------------
Q 026402 77 -H-DPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNE-DGSFSGD-----------I---------------- 123 (239)
Q Consensus 77 -~-~~~~~~T~~al~~L~~l~~~~---~~~~~~~~~~l~~~Q~~-dGgf~~~-----------~---------------- 123 (239)
. ......|++++.+|...+... ...++++++||.+.|.. +++|... +
T Consensus 956 g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~ 1035 (1325)
T 2pn5_A 956 GGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFID 1035 (1325)
T ss_dssp CCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEE
T ss_pred CcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhc
Confidence 1 123444555555554322111 12356788898887765 5665311 0
Q ss_pred --------CCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHh
Q 026402 124 --------WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (239)
Q Consensus 124 --------~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l 190 (239)
...++++.|-+++.+|...+. .....+.++||++.|+.+|||.. ...|.++|.||+..
T Consensus 1036 ~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~AL~~y 1101 (1325)
T 2pn5_A 1036 ADKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKALTKM 1101 (1325)
T ss_dssp TTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHHHHHH
T ss_pred cCCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHHHHHH
Confidence 001234444444444433333 34567899999999999999963 35678888777654
No 26
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.09 E-value=1.6e-10 Score=100.47 Aligned_cols=159 Identities=17% Similarity=0.044 Sum_probs=96.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCC--------------------------------------CCCchhHHHHHHHHHHhcC
Q 026402 54 EEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALFD 95 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l~ 95 (239)
-+++.+.|+..|+++|||..... .+.+...|..++.+|..+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 56789999999999999975321 0123356888888776653
Q ss_pred CC-C--C-----CCHHHHHHHHHhccCCCCCcccC-CCCC--------CCcchhHHHHhHHHhhccC-------------
Q 026402 96 KV-D--I-----LDADKVSNYIVGLQNEDGSFSGD-IWGE--------VDTRFSYIAICCLSILQRL------------- 145 (239)
Q Consensus 96 ~~-~--~-----~~~~~~~~~l~~~Q~~dGgf~~~-~~~~--------~d~~~ty~al~~l~~l~~~------------- 145 (239)
.. . . ..++++++||...|.+||||... +... +| ..|--++-.|..++..
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~ 241 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 32 1 1 12579999999999999999753 2211 11 1122233334333331
Q ss_pred -ChhcHHHHHHHHHhccCC-CCCccCCCCC---------------C--C-chhhHHHHHHHHHHhCCCCCC-----CHHH
Q 026402 146 -DKINVDKAVEYIVSCKNL-DGGFGCTPGG---------------E--S-HSGQIFCCVGALAIAGALHHV-----DKDL 200 (239)
Q Consensus 146 -~~~~~~~~~~~l~~~Q~~-dGGf~~~~~~---------------~--s-~~~~T~~al~aL~~l~~~~~~-----~~~~ 200 (239)
....++|+++||++.|.+ ||.|- +.+. | + .+..|.++|. .+++...+. .+.+
T Consensus 242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~--~LM~~~~~~~~~~~aI~~ 318 (408)
T 1r76_A 242 RALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILL--FLMEIEAPSDAVKQAIRG 318 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHH--HHTTSSSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHH--HHccCCCCCHHHHHHHHH
Confidence 124678999999999999 99875 4221 0 0 1223333332 333332222 2789
Q ss_pred HHHHHHhccccCCccC
Q 026402 201 LGWWLCERQVKSGGLN 216 (239)
Q Consensus 201 ~~~~L~~~Q~~~GGf~ 216 (239)
+++||.++|.++|+|.
T Consensus 319 Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 319 GVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHHSCCCC----
T ss_pred HHHHHHHhhcCCCcee
Confidence 9999999999999987
No 27
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.06 E-value=8.9e-11 Score=102.09 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcccCCCCccccc--------------------------------------cccchHHHHHHHHHHHHhhC
Q 026402 6 ADKHVKYIISVEKKKDSFESVV--------------------------------------MEHLRLNGAYWGLTTLDILG 47 (239)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~--------------------------------------~~~~~~~~~y~al~~l~ll~ 47 (239)
.+++.+.|.+.|++.|||.... ....|...|.-++..|.-+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 5678899999999999995311 01233344666666665543
Q ss_pred CC----C----CcCHHHHHHHHHhccCCCCCCCCCCCCC----Cch----hHHHHHHHHHHhcCC----CCC--------
Q 026402 48 KL----D----AVDEEDVISWILKCQDESGGFAGNIGHD----PHV----LYTLSAVQVLALFDK----VDI-------- 99 (239)
Q Consensus 48 ~~----~----~~~~~~~i~~l~~~q~~dGgf~~~~~~~----~~~----~~T~~al~~L~~l~~----~~~-------- 99 (239)
.. . ....+++++||+++|.+||||+.+.-.. .++ ..|..+|..|..+.. +..
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR 242 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence 21 1 1247789999999999999999875311 111 345556666655432 111
Q ss_pred --CCHHHHHHHHHhccCC-CCCcccCCCC---------------CC-CcchhHHHHhHHHhhccC--Ch---hcHHHHHH
Q 026402 100 --LDADKVSNYIVGLQNE-DGSFSGDIWG---------------EV-DTRFSYIAICCLSILQRL--DK---INVDKAVE 155 (239)
Q Consensus 100 --~~~~~~~~~l~~~Q~~-dGgf~~~~~~---------------~~-d~~~ty~al~~l~~l~~~--~~---~~~~~~~~ 155 (239)
..++++++||.+.|.+ ||.|. ++.. |. -++..-.+-.++.++... ++ ..++++++
T Consensus 243 ~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~ 321 (408)
T 1r76_A 243 ALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVA 321 (408)
T ss_dssp HHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 1368899999999999 99987 3211 00 111111111112222222 11 25899999
Q ss_pred HHHhccCCCCCcc
Q 026402 156 YIVSCKNLDGGFG 168 (239)
Q Consensus 156 ~l~~~Q~~dGGf~ 168 (239)
||.++|++||+|-
T Consensus 322 WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 322 WLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHSCCCC----
T ss_pred HHHHhhcCCCcee
Confidence 9999999999997
No 28
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.95 E-value=3.1e-08 Score=94.11 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=116.8
Q ss_pred HHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHhccCCCCCCCCCC--------CC
Q 026402 9 HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQDESGGFAGNI--------GH 77 (239)
Q Consensus 9 ~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~---~~~~~~i~~l~~~q~~dGgf~~~~--------~~ 77 (239)
.++-+.+.|++||+|..|++.++..|.|.|++..|..+..... ....+++.||.+.|.+||.|...- +.
T Consensus 373 gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg 452 (767)
T 4fxk_B 373 GYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGG 452 (767)
T ss_dssp HHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSS
T ss_pred HHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCC
Confidence 3333456789999999998888999999999999998876432 246778899999999999997532 11
Q ss_pred ----CCchhHHHHHHHHHHhcCCCC--C----------CCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-HHh--H
Q 026402 78 ----DPHVLYTLSAVQVLALFDKVD--I----------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AIC--C 138 (239)
Q Consensus 78 ----~~~~~~T~~al~~L~~l~~~~--~----------~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~-al~--~ 138 (239)
..++..|.+.+.+|...+... . ..+.++++||.+....+ + ...|. |+. +
T Consensus 453 ~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--~----------~~~y~~Al~aya 520 (767)
T 4fxk_B 453 LVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--L----------LGAHAAAITAYA 520 (767)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--C----------CCHHHHHHHHHH
T ss_pred cCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--c----------CCHHHHHHHHHH
Confidence 123556677776665433211 0 12567888887765331 1 11232 222 2
Q ss_pred HHhhccCChhcHHHHHHHHHhccCCCCC---ccCCCCC---------------------C-CchhhHHHHHHHHHHhCCC
Q 026402 139 LSILQRLDKINVDKAVEYIVSCKNLDGG---FGCTPGG---------------------E-SHSGQIFCCVGALAIAGAL 193 (239)
Q Consensus 139 l~~l~~~~~~~~~~~~~~l~~~Q~~dGG---f~~~~~~---------------------~-s~~~~T~~al~aL~~l~~~ 193 (239)
|.+.+.. ....+.+.+-|.+.-..+|+ |....+. . .+...|.++|.++.....
T Consensus 521 L~l~~~~-~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~- 598 (767)
T 4fxk_B 521 LSLTKAP-VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG- 598 (767)
T ss_dssp HHHHTCT-THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHcCCc-HHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCC-
Confidence 3333432 12233444555554333332 2111110 0 124567888866554432
Q ss_pred CCCCHHHHHHHHHhccccCCccC
Q 026402 194 HHVDKDLLGWWLCERQVKSGGLN 216 (239)
Q Consensus 194 ~~~~~~~~~~~L~~~Q~~~GGf~ 216 (239)
+.....+.++||.+.|+..|||.
T Consensus 599 ~~~~a~~iv~WL~~Qr~~~Ggf~ 621 (767)
T 4fxk_B 599 KAEMADQASAWLTRQGSFQGGFR 621 (767)
T ss_dssp SCHHHHHHHHHHHHTCCTTSSCS
T ss_pred chhHHHHHHHHHHHhhcCCCCCc
Confidence 23346789999999999899996
No 29
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.94 E-value=2.4e-10 Score=96.71 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=94.7
Q ss_pred HHHHHHHhccCCCCCCCCCCC-------------CCCchhHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHhccCCCC
Q 026402 56 DVISWILKCQDESGGFAGNIG-------------HDPHVLYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDG 117 (239)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~-------------~~~~~~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~Q~~dG 117 (239)
.+.+.|+..|+++|||..... .+++...|..++.+|..+.... ...++++++||...|.++|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 357889999999999996421 2345567888888886553211 1125899999999999999
Q ss_pred CcccC-CCCC--------CCcchhHHHHhHHHhhcc----C------------ChhcHHHHHHHHHhccCCCCCccCCCC
Q 026402 118 SFSGD-IWGE--------VDTRFSYIAICCLSILQR----L------------DKINVDKAVEYIVSCKNLDGGFGCTPG 172 (239)
Q Consensus 118 gf~~~-~~~~--------~d~~~ty~al~~l~~l~~----~------------~~~~~~~~~~~l~~~Q~~dGGf~~~~~ 172 (239)
||... |... +| ..|--++-.|..++. . ....++|+++||++.|.++|||-.+.+
T Consensus 115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg 193 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC 193 (332)
T ss_dssp CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence 99863 2211 12 123334444444431 1 124578999999999999998865543
Q ss_pred CCCchhhHHH----------------HHHHHH-HhCCCCCC----CHHHHHHHHHhccc
Q 026402 173 GESHSGQIFC----------------CVGALA-IAGALHHV----DKDLLGWWLCERQV 210 (239)
Q Consensus 173 ~~s~~~~T~~----------------al~aL~-~l~~~~~~----~~~~~~~~L~~~Q~ 210 (239)
. .|.+.|.- ++..+. +++..... .++++++||.++|.
T Consensus 194 ~-qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 194 A-QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp S-EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred c-ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 2 12122222 122222 33432211 27899999999998
No 30
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.89 E-value=5e-08 Score=99.57 Aligned_cols=191 Identities=14% Similarity=0.153 Sum_probs=122.1
Q ss_pred HHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-ccCCCCCCCCCC--------C--
Q 026402 11 KYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNI--------G-- 76 (239)
Q Consensus 11 ~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~--------~-- 76 (239)
+-+++.|++||+|..|...+...|.|-|++..|..+.... +...+++++||.+ .|++||.|.... +
T Consensus 1053 ~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~ 1132 (1661)
T 2b39_A 1053 TQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGF 1132 (1661)
T ss_dssp HHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCT
T ss_pred HHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCc
Confidence 3344688999999999877889999999999999887642 2246789999995 999999986421 1
Q ss_pred ---CCCchhHHHHHHHHHHhcCCC-----CCC--CHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC
Q 026402 77 ---HDPHVLYTLSAVQVLALFDKV-----DIL--DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD 146 (239)
Q Consensus 77 ---~~~~~~~T~~al~~L~~l~~~-----~~~--~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~ 146 (239)
.++++..|.+++.+|...+.. ... .++++++||.+.... + .+......+..+|.+.+..
T Consensus 1133 ~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~- 1201 (1661)
T 2b39_A 1133 RDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL- 1201 (1661)
T ss_dssp TCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC-
T ss_pred cccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc-
Confidence 112556677777777665432 111 256789999775322 1 1111111122334445543
Q ss_pred hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402 147 KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG 217 (239)
Q Consensus 147 ~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~ 217 (239)
.+++++.|.+.......|....+...+...|.+||.++...+. .....+.++||.+.|+..|||..
T Consensus 1202 ---a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~--~~~~~~iv~wL~~qr~~~gg~~S 1267 (1661)
T 2b39_A 1202 ---EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKD--YDTTPPVVRWLNEQRYYGGGYGS 1267 (1661)
T ss_dssp ---CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTSHHHHHHHHHCCTBTTBBCS
T ss_pred ---HHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhcccCCCCccc
Confidence 3556666666544222343221112356688888888877764 34467889999998888899974
No 31
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.84 E-value=3.6e-10 Score=95.66 Aligned_cols=155 Identities=12% Similarity=0.133 Sum_probs=98.3
Q ss_pred HHHHHHHHcccCCCCcccc-------------ccccchHHHHHHHHHHHHhhCCC--C---CcCHHHHHHHHHhccCCCC
Q 026402 8 KHVKYIISVEKKKDSFESV-------------VMEHLRLNGAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESG 69 (239)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~-------------~~~~~~~~~~y~al~~l~ll~~~--~---~~~~~~~i~~l~~~q~~dG 69 (239)
+..+-|.+.|++.|||... .....|...|.-++..|+-+... + ....+++++||+++|.+||
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 3467788999999999631 12245666677777777655321 1 1257899999999999999
Q ss_pred CCCCCCCC----CCch----hHHHHHHHHHHhcCC----CC------------CCCHHHHHHHHHhccCCCCCcccCCCC
Q 026402 70 GFAGNIGH----DPHV----LYTLSAVQVLALFDK----VD------------ILDADKVSNYIVGLQNEDGSFSGDIWG 125 (239)
Q Consensus 70 gf~~~~~~----~~~~----~~T~~al~~L~~l~~----~~------------~~~~~~~~~~l~~~Q~~dGgf~~~~~~ 125 (239)
||+.+.-. ..++ ..|..+|..|..+.. +. ...++++++||.+.|.++|||.+.+..
T Consensus 115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~ 194 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA 194 (332)
T ss_dssp CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeecc
Confidence 99987431 1111 356777777776642 11 113688999999999999998876432
Q ss_pred CCCcchhHH----------------HHhHHH-hhccCChh----cHHHHHHHHHhccCC
Q 026402 126 EVDTRFSYI----------------AICCLS-ILQRLDKI----NVDKAVEYIVSCKNL 163 (239)
Q Consensus 126 ~~d~~~ty~----------------al~~l~-~l~~~~~~----~~~~~~~~l~~~Q~~ 163 (239)
.+...|+. ++..+. +++..... .++++++||.++|++
T Consensus 195 -qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 195 -QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp -EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred -ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 11111111 222211 22222211 489999999999984
No 32
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.68 E-value=1.8e-07 Score=94.11 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=104.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCC----CCCchhHHHHHHHHHHhcCCCCCC---CHHHHHHHHHhccCCCCCcccC--C-
Q 026402 54 EEDVISWILKCQDESGGFAGNIG----HDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGSFSGD--I- 123 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~~Q~~dGgf~~~--~- 123 (239)
.++++++++++|++||||+.++. ..++.+.|.+++..|..+...-.+ ..+++++||.+.|.+||+|... .
T Consensus 985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~ 1064 (1451)
T 4acq_A 985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLL 1064 (1451)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCS
T ss_pred HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCccc
Confidence 45788999999999999999864 468899999999999887653222 3688999999999999999742 1
Q ss_pred -----CC-CCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCC
Q 026402 124 -----WG-EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV 196 (239)
Q Consensus 124 -----~~-~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~ 196 (239)
++ +.++..|..++.+|...+.. ....++++++||.+.-.. +.. .....+++.....-.||++++. ..
T Consensus 1065 ~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~---~~~-~~~~~~~y~~AllAyAlal~g~--~~ 1138 (1451)
T 4acq_A 1065 NNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKT---AQE-GDHGSHVYTKALLAYAFALAGN--QD 1138 (1451)
T ss_dssp CGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHH---HTS-SCSSSTHHHHHHHHHHHHHHTC--HH
T ss_pred chhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhh---ccc-ccccCChHHHHHHHHHHHhcCC--hh
Confidence 11 23455566677777666653 234688999999865211 110 0112345555555556677764 22
Q ss_pred CHHHHHHHHHhccccCCccCC
Q 026402 197 DKDLLGWWLCERQVKSGGLNG 217 (239)
Q Consensus 197 ~~~~~~~~L~~~Q~~~GGf~~ 217 (239)
..+.+++-|.+....+||...
T Consensus 1139 ~~~~~l~~L~~~a~~~~~~~~ 1159 (1451)
T 4acq_A 1139 KRKEVLKSLNEEAVKKDNSVH 1159 (1451)
T ss_dssp HHHHHHHHHHHHCCBCSSCBC
T ss_pred HHHHHHHHHHHHhhccCCcee
Confidence 234466666666666666333
No 33
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.60 E-value=4e-07 Score=93.09 Aligned_cols=198 Identities=14% Similarity=0.046 Sum_probs=120.6
Q ss_pred HHHHHHHHH-------HcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-ccCCCCCCCCC
Q 026402 6 ADKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGN 74 (239)
Q Consensus 6 ~~~~~~yl~-------~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~ 74 (239)
+++++++|+ +.|++||+|..|...+.+.|.|-|++..|..+.... +...+++++||.+ .|++||.|...
T Consensus 1042 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1042 KQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp HHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 445666644 578899999999777889999999999998876532 2246789999999 99999998643
Q ss_pred CC--------CC------CchhHHHHHHHHHHhcCCCC---C--CCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-
Q 026402 75 IG--------HD------PHVLYTLSAVQVLALFDKVD---I--LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI- 134 (239)
Q Consensus 75 ~~--------~~------~~~~~T~~al~~L~~l~~~~---~--~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~- 134 (239)
.. .. +++..|.+++.+|...+... . ..+.++++||.+.... + .+. ++-+
T Consensus 1122 ~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~-y~~A~ 1190 (1676)
T 3cu7_A 1122 SQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QST-FTLAI 1190 (1676)
T ss_dssp SSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCH-HHHHH
T ss_pred ccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCH-HHHHH
Confidence 11 00 13445666676665443220 1 1246788999775322 1 111 1211
Q ss_pred HHhHHHhhccCChhcHHHHHHHHHhccCCCC------CccCCCC-----C---C--CchhhHHHHHHHHHHhCCCCCCCH
Q 026402 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDG------GFGCTPG-----G---E--SHSGQIFCCVGALAIAGALHHVDK 198 (239)
Q Consensus 135 al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dG------Gf~~~~~-----~---~--s~~~~T~~al~aL~~l~~~~~~~~ 198 (239)
+..+|.+.+... ...+++++.|.+....+| -|...+. . . .+...|.++|.+|...+ +....
T Consensus 1191 lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~--~~~~~ 1267 (1676)
T 3cu7_A 1191 SAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLK--DINYV 1267 (1676)
T ss_dssp HHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcC--ChhHH
Confidence 112233344422 115666777776554332 2332210 0 1 24567888887776654 23346
Q ss_pred HHHHHHHHhccccCCccCC
Q 026402 199 DLLGWWLCERQVKSGGLNG 217 (239)
Q Consensus 199 ~~~~~~L~~~Q~~~GGf~~ 217 (239)
.+.++||.+.|+..|||..
T Consensus 1268 ~~iv~wL~~qr~~~Gg~~S 1286 (1676)
T 3cu7_A 1268 NPVIKWLSEEQRYGGGFYS 1286 (1676)
T ss_dssp HHHHHHHHHHSCSSSCCST
T ss_pred HHHHHHHHhccCCCCCccc
Confidence 7889999998888899974
No 34
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.59 E-value=5.6e-09 Score=105.74 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHH-------HcccCCCCccccccccchHHHHHHHHHHHHhhCCC----CCcCHHHHHHHHHh-ccCCCCCCCCC
Q 026402 7 DKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILK-CQDESGGFAGN 74 (239)
Q Consensus 7 ~~~~~yl~-------~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~----~~~~~~~~i~~l~~-~q~~dGgf~~~ 74 (239)
+++.+||+ +.|++||+|..|...+...|.|.|++..|...... ++....++++||.+ +|++||.|...
T Consensus 1026 ~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B 1026 TEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccc
Confidence 34555554 47789999999987778999999999999877653 22357889999998 89999999753
Q ss_pred C--------C----CCCchhHHHHHHHHHHhcCCC-----C--CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-
Q 026402 75 I--------G----HDPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI- 134 (239)
Q Consensus 75 ~--------~----~~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~- 134 (239)
. | .+.++..|.+.+.+|...+.. . ...+++++.||.+.-.. +...|.
T Consensus 1106 ~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~-------------~~~~Y~~ 1172 (1642)
T 3prx_B 1106 APVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK-------------LQRPYTT 1172 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc-------------CCCHHHH
Confidence 2 1 134566777777766554321 1 12467888899765321 001121
Q ss_pred HHh--HHHhhccCChhcHHHHHHHHHhccCCCCCccCCCC-CCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc
Q 026402 135 AIC--CLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK 211 (239)
Q Consensus 135 al~--~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~-~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~ 211 (239)
|+. +|.+.+... .+.+.++. +. +.-+-..++ ...+...|.|||.++..++. .......++||.+.|+.
T Consensus 1173 Ai~aYAl~l~~~~~---~~~l~~l~-~~---~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~--~~~a~~iv~WL~~qr~~ 1243 (1642)
T 3prx_B 1173 ALTAYALAAADQLN---DDRVLMAA-ST---GRDHWEEYNAHTHNIEGTSYALLALLKMKK--FDQTGPIVRWLTDQNFY 1243 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCch---HHHHHHHH-hc---CCCCCCCCCCchHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHhccC
Confidence 111 122333321 11111111 11 222222232 23577899999976655543 34567889999999999
Q ss_pred CCccCC
Q 026402 212 SGGLNG 217 (239)
Q Consensus 212 ~GGf~~ 217 (239)
.|||..
T Consensus 1244 ~Ggf~S 1249 (1642)
T 3prx_B 1244 GETYGQ 1249 (1642)
T ss_dssp ------
T ss_pred CCcccC
Confidence 999974
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.56 E-value=4.9e-07 Score=79.04 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCC-C----CCHHHHH----
Q 026402 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-I----LDADKVS---- 106 (239)
Q Consensus 36 ~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~----~~~~~~~---- 106 (239)
.-+++.+|-..|... .++.++.|+..|. +++|. .+...++..|..|+++|..+++.. . ..+++++
T Consensus 139 ~sL~vLALC~~g~~v---~~~~v~~Ll~~~~-~~~~~--~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~ 212 (414)
T 2bb6_A 139 YSLGILALCVHQKRV---HDSVVGKLLYAVE-HKPHL--LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQ 212 (414)
T ss_dssp HHHHHHHHHHTTCCC---CHHHHHHHHHHHH-SSSCS--CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCc---cHHHHHHHHHHhh-ccCcC--CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Confidence 344555555666543 4557777777665 44553 233457889999999998875411 1 1145555
Q ss_pred HHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCCh---hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHH
Q 026402 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183 (239)
Q Consensus 107 ~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~---~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~a 183 (239)
++|.+.|++||+|+ ++.+|-.|+.+|...+.... .+..+++++|++ |.+||+|. ++-.|..+
T Consensus 213 ~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~ 277 (414)
T 2bb6_A 213 EKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQL 277 (414)
T ss_dssp HHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHH
T ss_pred HHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHH
Confidence 88889999999997 45668888888887776332 367789999999 99999996 44567777
Q ss_pred HHHHH
Q 026402 184 VGALA 188 (239)
Q Consensus 184 l~aL~ 188 (239)
+-+|.
T Consensus 278 lpaL~ 282 (414)
T 2bb6_A 278 LPVLN 282 (414)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 75443
No 36
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.29 E-value=8.8e-06 Score=83.20 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=92.1
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCC--------
Q 026402 56 DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDI-------- 123 (239)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~-------- 123 (239)
.+++-+++.|++||||+++++.+++.+.|.+++..|..+...-.++ .+++++||.+ .|.+||.|....
T Consensus 1050 ~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~ 1129 (1661)
T 2b39_A 1050 KGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMI 1129 (1661)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSC
T ss_pred HHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhc
Confidence 3555567899999999999988899999999999998887654444 5789999995 999999996421
Q ss_pred CC-----CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhC
Q 026402 124 WG-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (239)
Q Consensus 124 ~~-----~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~ 191 (239)
++ ++++..|..++.+|...+.. ....++++++||.+.... ..+++.....-.||++++
T Consensus 1130 gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~layAL~l~g 1199 (1661)
T 2b39_A 1130 GGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE----------LRRPYTVAIAAYALALLG 1199 (1661)
T ss_dssp CCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT----------CCSHHHHHHHHHHHHHTT
T ss_pred CCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc----------cCCHHHHHHHHHHHHHcC
Confidence 11 12444455556665544332 123567899999775321 133333333334455565
Q ss_pred CCCCCCHHHHHHHHHhccc
Q 026402 192 ALHHVDKDLLGWWLCERQV 210 (239)
Q Consensus 192 ~~~~~~~~~~~~~L~~~Q~ 210 (239)
.. .+++++.|.....
T Consensus 1200 ~~----a~~~l~~L~~~~~ 1214 (1661)
T 2b39_A 1200 KL----EGDRLTKFLNTAK 1214 (1661)
T ss_dssp CC----CHHHHHHHHHHSB
T ss_pred Cc----HHHHHHHHHhhcc
Confidence 43 4666777776544
No 37
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.25 E-value=8.9e-05 Score=70.33 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHhhCCCC---CcC-------HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC
Q 026402 32 RLNGAYWGLTTLDILGKLD---AVD-------EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD 101 (239)
Q Consensus 32 ~~~~~y~al~~l~ll~~~~---~~~-------~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~ 101 (239)
.+.-..|++..|...++.. +.. .+.+++-+++.|++||||+++++..++.+.|.+++..|..+...-.++
T Consensus 338 ~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id 417 (767)
T 4fxk_B 338 YLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGS 417 (767)
T ss_dssp GTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCC
T ss_pred hhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcc
Confidence 3434567777777766532 111 344566677899999999999999999999999999999887655444
Q ss_pred ---HHHHHHHHHhccCCCCCccc
Q 026402 102 ---ADKVSNYIVGLQNEDGSFSG 121 (239)
Q Consensus 102 ---~~~~~~~l~~~Q~~dGgf~~ 121 (239)
...++.||.+.|.+||.|..
T Consensus 418 ~~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 418 PEKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp HHHHHHHHHHHHHTBCTTSCBCC
T ss_pred hHHHHHHHHHHHHhhhhcccchh
Confidence 56788999999999999974
No 38
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.19 E-value=5.8e-06 Score=72.29 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=76.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC-----hhcHHHHH----HHH
Q 026402 87 AVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KINVDKAV----EYI 157 (239)
Q Consensus 87 al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-----~~~~~~~~----~~l 157 (239)
++.+|...+. .+. .+.+..|...|. +++|... +..|+-.+-.|+.+|..+++-. ...+++++ ++|
T Consensus 142 ~vLALC~~g~--~v~-~~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l 215 (414)
T 2bb6_A 142 GILALCVHQK--RVH-DSVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKI 215 (414)
T ss_dssp HHHHHHHTTC--CCC-HHHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--Ccc-HHHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Confidence 5555555543 222 445555556554 3455411 2235666766777777766421 12345555 888
Q ss_pred HhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCC---CCHHHHHHHHHhccccCCccC
Q 026402 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLN 216 (239)
Q Consensus 158 ~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~---~~~~~~~~~L~~~Q~~~GGf~ 216 (239)
++.|++||+|+ +.+.|..|+.+|...+.... ++..++++||++ |.++|+|.
T Consensus 216 ~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 216 LKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 88999999997 45679999999988875321 466789999998 99999997
No 39
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.97 E-value=5.4e-05 Score=77.56 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=88.5
Q ss_pred HHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCCC---CC----
Q 026402 58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW---GE---- 126 (239)
Q Consensus 58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~---~~---- 126 (239)
++-+++.|++||||+++.+..++.+.|.+++..|..+...-.++ .+++++||.+ .|.+||.|..... .+
T Consensus 1053 ~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg 1132 (1676)
T 3cu7_A 1053 MLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGT 1132 (1676)
T ss_dssp HHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSC
T ss_pred HHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCC
Confidence 33456789999999999888899999999999998876543444 5789999999 9999999964211 00
Q ss_pred -------CCcchhHHHHhHHHhhccC-----ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC
Q 026402 127 -------VDTRFSYIAICCLSILQRL-----DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH 194 (239)
Q Consensus 127 -------~d~~~ty~al~~l~~l~~~-----~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~ 194 (239)
+++..|..++.+|...+.. ....++++++||.+.... ..+++.....-.||++++.
T Consensus 1133 ~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~lA~Al~l~g~-- 1200 (1676)
T 3cu7_A 1133 LPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP----------AQSTFTLAISAYALSLGDK-- 1200 (1676)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS----------CSCHHHHHHHHHHHTTSCT--
T ss_pred cccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc----------cCCHHHHHHHHHHHHhcCC--
Confidence 1333444455555443332 123567899999765321 1233332222223334433
Q ss_pred CCC-HHHHHHHHHhccccC
Q 026402 195 HVD-KDLLGWWLCERQVKS 212 (239)
Q Consensus 195 ~~~-~~~~~~~L~~~Q~~~ 212 (239)
... .+++++.|.+.....
T Consensus 1201 ~~~~a~~~l~~L~~~a~~~ 1219 (1676)
T 3cu7_A 1201 THPQFRSIVSALKREALVK 1219 (1676)
T ss_dssp TCHHHHHHHHHHHHHCEEE
T ss_pred chhhHHHHHHHHHhhhhhc
Confidence 222 566777887765433
No 40
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.95 E-value=1.8e-05 Score=68.84 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=87.4
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCC---CC--C-----C--CHHHHH
Q 026402 39 GLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---VD--I-----L--DADKVS 106 (239)
Q Consensus 39 al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~---~~--~-----~--~~~~~~ 106 (239)
++..|++--...+ ...+.++-|...|+.||+ .-++..+..|+++|..+.+ .. . + -+++++
T Consensus 118 sL~vLALC~~~~~-v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~ 189 (399)
T 2pmv_A 118 SLAILALCQKNSE-ATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIV 189 (399)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-CCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 4555554422211 356777778888887742 2357888888888877754 11 0 1 157788
Q ss_pred HHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccC--ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHH
Q 026402 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCV 184 (239)
Q Consensus 107 ~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al 184 (239)
++|.+.|++||+|+ |+.+|--|+.+|...+.. ...+..++.++|++ |..||+|+ ++-.|...+
T Consensus 190 ~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQil 254 (399)
T 2pmv_A 190 EKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQIL 254 (399)
T ss_dssp HHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHH
T ss_pred HHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHH
Confidence 99999999999997 567777788888777652 22378899999998 99999996 455677666
Q ss_pred HHH
Q 026402 185 GAL 187 (239)
Q Consensus 185 ~aL 187 (239)
-+|
T Consensus 255 PaL 257 (399)
T 2pmv_A 255 PSL 257 (399)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.89 E-value=2.8e-05 Score=67.66 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=73.1
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhcc---CC---------hhcHHHHHHHHHhccCCCCCccC
Q 026402 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR---LD---------KINVDKAVEYIVSCKNLDGGFGC 169 (239)
Q Consensus 102 ~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~---~~---------~~~~~~~~~~l~~~Q~~dGGf~~ 169 (239)
..+.+.-|...|+.||+ + .++..+..|+.+|..+.. .. ...+++++++|++.|++||+|+
T Consensus 132 ~~~~v~kLl~~~~~~g~----~---~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG- 203 (399)
T 2pmv_A 132 TLPIAVRFAKTLLANSS----P---FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG- 203 (399)
T ss_dssp HHHHHHHHHHHHHHCCS----C---CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS-
T ss_pred CHHHHHHHHHHHHccCC----c---ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc-
Confidence 45667777777777742 1 244445555666655544 11 1246778899999999999996
Q ss_pred CCCCCCchhhHHHHHHHHHHhCCC--CCCCHHHHHHHHHhccccCCccC
Q 026402 170 TPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVKSGGLN 216 (239)
Q Consensus 170 ~~~~~s~~~~T~~al~aL~~l~~~--~~~~~~~~~~~L~~~Q~~~GGf~ 216 (239)
+.+.|.-|+.||...+.. ..++..++++||+. |..+|+|.
T Consensus 204 ------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 204 ------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp ------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred ------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence 688999999999998863 34588999999998 99999997
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.37 E-value=2.6e-05 Score=79.29 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCC-C---CHHHHHHHHHh-ccCCCCCcccCC-----
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-L---DADKVSNYIVG-LQNEDGSFSGDI----- 123 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~---~~~~~~~~l~~-~Q~~dGgf~~~~----- 123 (239)
.+.+++-+++.|++||||+.+.+.+++.+.|.+++..|......-. + -..++++||.+ +|++||+|....
T Consensus 1032 i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~ 1111 (1642)
T 3prx_B 1032 IVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSG 1111 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccch
Confidence 3445566677899999999998777899999999998887755322 3 36789999998 899999996431
Q ss_pred ---C----CCCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhc
Q 026402 124 ---W----GEVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSC 160 (239)
Q Consensus 124 ---~----~~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~ 160 (239)
+ .+.++..|..++.+|.-.+.. ....+++++.||.+.
T Consensus 1112 ~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1112 TMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ---------------------------------------------------
T ss_pred hccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 1 123455554455554333321 123578899999754
No 43
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.23 E-value=0.0086 Score=56.95 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHHHHHHHHccc---CCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCC--C
Q 026402 7 DKHVKYIISVEK---KKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH--D 78 (239)
Q Consensus 7 ~~~~~yl~~~q~---~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~--~ 78 (239)
++.++-+++..+ .||.+.. -.+-+..|.| ++++... ......+.++||+..|.+||+|+..... .
T Consensus 57 ~~Lie~VK~~l~~~~~~g~~g~---~S~S~YDTAW----VAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~ 129 (817)
T 3sdr_A 57 EVLVSEIKAMLNPAITGDGESM---ITPSAYDTAW----VARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLS 129 (817)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCC---CCCCHHHHHH----HHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHH
T ss_pred HHHHHHHHHHhccccCCCCCcc---cccCHHHhhH----HheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchH
Confidence 445556666554 4551111 1345566888 3444332 1225689999999999999999864321 1
Q ss_pred CchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcc
Q 026402 79 PHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ 113 (239)
Q Consensus 79 ~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q 113 (239)
..+.+|++|+.+|..-+. ....+++++.||.+.-
T Consensus 130 d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 130 DRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSNL 163 (817)
T ss_dssp HHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 246899999998876442 2224678888888753
No 44
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.04 E-value=0.098 Score=49.77 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=38.9
Q ss_pred HHHHHHHHHcccCCCCcccccc--ccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026402 7 DKHVKYIISVEKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC 64 (239)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~ 64 (239)
...++||..-|.+||+|+.... ..-++-.|.-||.+|.--+..+ ..+++++.||.+.
T Consensus 104 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~-~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 104 PQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVGD-LQVEQGIEFIKSN 162 (817)
T ss_dssp HHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHH
Confidence 4678999999999999974211 1224555666676666544332 3688899999875
No 45
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.04 E-value=0.01 Score=56.11 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=60.1
Q ss_pred HHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCC--C
Q 026402 7 DKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHD--P 79 (239)
Q Consensus 7 ~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~ 79 (239)
+..++-|++..+ .+|.. .+-+..|.|+ +++... ......+.++||+..|.+||+|+...... .
T Consensus 34 ~~~~~~i~~~~~~~~~g~~------S~S~YDTAWV----amvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d 103 (785)
T 3s9v_A 34 ETLISEIKNMFRCMGYGET------NPSAYDTAWV----ARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYD 103 (785)
T ss_dssp HHHHHHHHHHHHHCSSCCC------CCCHHHHHHH----TTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHH
T ss_pred HHHHHHHHHHhhcCCCCcc------cCcHHHhhHH----hccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHH
Confidence 344555555543 33432 2445567883 333322 12256899999999999999998643211 2
Q ss_pred chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q 026402 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGL 112 (239)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~ 112 (239)
.+.+|++|+.+|..-+. ....+++++.||.+.
T Consensus 104 ~l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 104 RILATLACIITLTLWRT-GETQVQKGIEFFRTQ 135 (785)
T ss_dssp HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHH
Confidence 37899999999876442 222478888888765
No 46
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=95.98 E-value=0.12 Score=48.75 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=38.3
Q ss_pred HHHHHHHHHcccCCCCccccc--cccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026402 7 DKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC 64 (239)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~ 64 (239)
...++||..-|.+||+|+... ....++-.|.-||.+|.-=+..+ ..+++++.||.+.
T Consensus 56 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~-~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 56 PQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTGH-SQVQQGAEFIAEN 114 (764)
T ss_dssp HHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHH
Confidence 467899999999999997421 11224555666666666544332 3678888998764
No 47
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=95.95 E-value=0.011 Score=55.88 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcccC--CCCccccccccchHHHHHHHHHHHHhh--CCCCCcCHHHHHHHHHhccCCCCCCCCCCCCC--C
Q 026402 6 ADKHVKYIISVEKK--KDSFESVVMEHLRLNGAYWGLTTLDIL--GKLDAVDEEDVISWILKCQDESGGFAGNIGHD--P 79 (239)
Q Consensus 6 ~~~~~~yl~~~q~~--dg~~~~~~~~~~~~~~~y~al~~l~ll--~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~ 79 (239)
++..++-|++..+. +|.. .+-+..|.|+ +-.-.+ +........+.++||+..|.+||+|+...... .
T Consensus 10 ~~~~~~~i~~~~~~~~~g~~------S~S~YDTAWV-amvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d 82 (764)
T 3p5p_A 10 ADELVVKIKDMFNALGDGDI------SPSAYDTAWV-ARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCD 82 (764)
T ss_dssp HHHHHHHHHHHHHTCSSCCC------CCCHHHHHHH-HHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHH
T ss_pred HHHHHHHHHHHHhcCCCCcc------cCcHHHHHHH-HhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHH
Confidence 45566677766553 3332 2445668882 222222 21111257889999999999999998643211 2
Q ss_pred chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcc
Q 026402 80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ 113 (239)
Q Consensus 80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q 113 (239)
.+.+|++||.+|..-+. ....+++++.||.+.-
T Consensus 83 ~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 83 RLLNTTNSVIALSVWKT-GHSQVQQGAEFIAENL 115 (764)
T ss_dssp HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 46899999998876432 2224788888887653
No 48
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.91 E-value=0.19 Score=47.17 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=37.7
Q ss_pred HHHHHHHHHcccCCCCcccccc--ccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026402 7 DKHVKYIISVEKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC 64 (239)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~ 64 (239)
.+-++||..-|.+||+|+.... ..-++-.|.-||.+|.-=+..+ ..+++++.||.+.
T Consensus 53 p~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~-~~i~rGl~fl~~n 111 (727)
T 3pya_A 53 PSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLFP-HQCNKGITFFREN 111 (727)
T ss_dssp HHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHH
Confidence 4578999999999999974321 1124555666666665533322 2688899999764
No 49
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.05 E-value=0.041 Score=51.57 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=60.8
Q ss_pred HHHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccCCCCCCCCCCCCC--Cc
Q 026402 6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHD--PH 80 (239)
Q Consensus 6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~~ 80 (239)
++..++-|+++.. .+|... +-+..|.|+ +++...+ .....+.++||+..|.+||+|+...... ..
T Consensus 11 ~~~~~~~ir~~l~~~~~g~~S------~S~YDTAWV----Amvp~~~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ 80 (727)
T 3pya_A 11 FKEAVKSVKTILRNLTDGEIT------ISAYDTAWV----ALIDAGDKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDR 80 (727)
T ss_dssp HHHHHHHHHHHHHTCCSCCCC------CCHHHHHHH----HTCBCSSSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHhccCCccc------CcHHHhHHH----hhccCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhH
Confidence 4555666666554 244332 445668883 3443221 1147899999999999999999643211 13
Q ss_pred hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q 026402 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGL 112 (239)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~ 112 (239)
+.+|++|+.+|..-+. ..-.+++++.||.+.
T Consensus 81 ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~n 111 (727)
T 3pya_A 81 LINTLACVVALRSWNL-FPHQCNKGITFFREN 111 (727)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 6899999998875332 222478888888764
No 50
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=93.99 E-value=0.058 Score=51.06 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCC-CCCC-cch
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIW-GEVD-TRF 131 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~-~~~d-~~~ 131 (239)
++..++-|++..+.- |++. ..+.++.|.+ |+..-..+......-..+++||...|.+||+|+.... ...| +..
T Consensus 33 ~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAW-Vamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~ 107 (785)
T 3s9v_A 33 IETLISEIKNMFRCM-GYGE---TNPSAYDTAW-VARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILA 107 (785)
T ss_dssp HHHHHHHHHHHHHHC-SSCC---CCCCHHHHHH-HTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CCCc---ccCcHHHhhH-HhccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHH
Confidence 445666666654321 2221 2466888888 3211111111122347899999999999999986421 1113 334
Q ss_pred hHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402 132 SYIAICCLSILQRLDKINVDKAVEYIVSC 160 (239)
Q Consensus 132 ty~al~~l~~l~~~~~~~~~~~~~~l~~~ 160 (239)
|-+++.+|.--+ ..+..+++++.||.+.
T Consensus 108 TlAcvlAL~~w~-~~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 108 TLACIITLTLWR-TGETQVQKGIEFFRTQ 135 (785)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCHHHHHHHHHHHHHH
Confidence 444443333222 2345788999999753
No 51
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.09 E-value=8.6 Score=33.81 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcc--CCCCCCCCCCCCCCc--hhHHHHHHHHHHhcCCCC--CC--CHHHHH----HHHHhccCCC-CCcc
Q 026402 54 EEDVISWILKCQ--DESGGFAGNIGHDPH--VLYTLSAVQVLALFDKVD--IL--DADKVS----NYIVGLQNED-GSFS 120 (239)
Q Consensus 54 ~~~~i~~l~~~q--~~dGgf~~~~~~~~~--~~~T~~al~~L~~l~~~~--~~--~~~~~~----~~l~~~Q~~d-Ggf~ 120 (239)
.++..+||+..+ +++|||.-....... +...|.++-.|..+.... .. -.+.++ .+...++.++ |-|.
T Consensus 170 a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~ 249 (445)
T 3k11_A 170 IQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYR 249 (445)
T ss_dssp HHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEEC
T ss_pred HHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEe
Confidence 455678898877 678998865322222 234456655555443211 11 122232 2333445443 4443
Q ss_pred cC----CCCCCC---cchhHHHHhHH-HhhccCCh---------hcHHHHHHHHHhccCCCCCccCCCCC---CCchhhH
Q 026402 121 GD----IWGEVD---TRFSYIAICCL-SILQRLDK---------INVDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQI 180 (239)
Q Consensus 121 ~~----~~~~~d---~~~ty~al~~l-~~l~~~~~---------~~~~~~~~~l~~~Q~~dGGf~~~~~~---~s~~~~T 180 (239)
.. ....+. .|..-|++.++ ..+..++. ...++.++.++++|.+||-|-..... ..+.+.|
T Consensus 250 Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaT 329 (445)
T 3k11_A 250 HGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSAT 329 (445)
T ss_dssp SEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHH
T ss_pred eeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHH
Confidence 21 101111 22233333333 23332221 23567889999999999998765432 2233333
Q ss_pred HHHHHHH---HHhCCCCC----CCHHHHHHHHHhccccCCccC
Q 026402 181 FCCVGAL---AIAGALHH----VDKDLLGWWLCERQVKSGGLN 216 (239)
Q Consensus 181 ~~al~aL---~~l~~~~~----~~~~~~~~~L~~~Q~~~GGf~ 216 (239)
.....+| ..++.++. ...+++.+.|..+..++|-..
T Consensus 330 Amfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 330 AIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 3222222 22344432 124677888888777777553
No 52
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.70 E-value=20 Score=22.18 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=18.4
Q ss_pred HHhHHHhhccCChhcHHHHHHHHHhccCCC
Q 026402 135 AICCLSILQRLDKINVDKAVEYIVSCKNLD 164 (239)
Q Consensus 135 al~~l~~l~~~~~~~~~~~~~~l~~~Q~~d 164 (239)
|..+|..-+. ++|++++||.+...+.
T Consensus 36 A~kALKat~~----NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 36 VLRAMKKKGE----NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHCS----CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHcCC----CHHHHHHHHHhCCCCC
Confidence 4444444433 8999999999987664
No 53
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=48.79 E-value=39 Score=28.79 Aligned_cols=68 Identities=7% Similarity=-0.004 Sum_probs=41.7
Q ss_pred HHHHHHHHHhccCCCCCccCCCCC---CCchhhHHHHHHHHHH---hCCCCCC---CHHHHHHHHHhccccCCccCC
Q 026402 150 VDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQIFCCVGALAI---AGALHHV---DKDLLGWWLCERQVKSGGLNG 217 (239)
Q Consensus 150 ~~~~~~~l~~~Q~~dGGf~~~~~~---~s~~~~T~~al~aL~~---l~~~~~~---~~~~~~~~L~~~Q~~~GGf~~ 217 (239)
.++.+++++++|.+||-|-..... ..+.+.|.....+|.- ++.++.. ..+++.+-|.++..++|-..+
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeC
Confidence 467889999999999998765433 2344444333333322 2333321 246788889888777776644
No 54
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=48.57 E-value=48 Score=29.02 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCc-hhHHHHHHHHHHhc-----CCCCC----CCHHHHHHHHHhccCCCCCcc
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDPH-VLYTLSAVQVLALF-----DKVDI----LDADKVSNYIVGLQNEDGSFS 120 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~-~~~T~~al~~L~~l-----~~~~~----~~~~~~~~~l~~~Q~~dGgf~ 120 (239)
.++.++.|.++|.++|-|-.....+.+ ..++..|+.+-.++ +.++. ...+++++-|.+..++||-..
T Consensus 296 ~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 296 FRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 556788889999999988765432222 23333333332222 22221 124678888888888888654
No 55
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=43.76 E-value=53 Score=27.97 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=41.5
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCC-chhHHHHHHHHHHhc-----CCCCCC---CHHHHHHHHHhccCCCCCcccC
Q 026402 54 EEDVISWILKCQDESGGFAGNIGHDP-HVLYTLSAVQVLALF-----DKVDIL---DADKVSNYIVGLQNEDGSFSGD 122 (239)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~-~~~~T~~al~~L~~l-----~~~~~~---~~~~~~~~l~~~Q~~dGgf~~~ 122 (239)
.++++++++++|.+||-|-.....+. -..++..|+.+-+++ +-++.. ..+++++-|.+..++||-..+.
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence 55688889999999998875543222 222333333332222 222221 2578999999988999876543
No 56
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=42.85 E-value=1.5e+02 Score=24.85 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=36.9
Q ss_pred HHHHHHHHHhccCC-CCCccCC---C---CCCCchhhHHHHHHHHHH---hCCCCCC---CHHHHHHHHHhc---cccCC
Q 026402 150 VDKAVEYIVSCKNL-DGGFGCT---P---GGESHSGQIFCCVGALAI---AGALHHV---DKDLLGWWLCER---QVKSG 213 (239)
Q Consensus 150 ~~~~~~~l~~~Q~~-dGGf~~~---~---~~~s~~~~T~~al~aL~~---l~~~~~~---~~~~~~~~L~~~---Q~~~G 213 (239)
.++.+++++++|.+ ||-|-.. | +...+.+.|.....+|.. .+.++.. ..+++.+.|.++ ..++|
T Consensus 243 ~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG 322 (373)
T 1nc5_A 243 LQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDG 322 (373)
T ss_dssp HHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTS
T ss_pred HHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCC
Confidence 46788999999997 8987632 2 222344444333333332 2444321 246677888764 35667
Q ss_pred cc
Q 026402 214 GL 215 (239)
Q Consensus 214 Gf 215 (239)
-.
T Consensus 323 ~l 324 (373)
T 1nc5_A 323 AF 324 (373)
T ss_dssp CE
T ss_pred CE
Confidence 44
No 57
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=38.85 E-value=17 Score=18.55 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.1
Q ss_pred ccCCccCCCCCCCCChhh
Q 026402 210 VKSGGLNGRPEKLPDVGL 227 (239)
Q Consensus 210 ~~~GGf~~~~~k~~D~c~ 227 (239)
.++|||-..|.|..|-|-
T Consensus 4 venggfcpdpekmgdwcc 21 (32)
T 4b2v_A 4 VENGGFCPDPEKMGDWCC 21 (32)
T ss_dssp CCTTCBCCCTTTTCCCCS
T ss_pred hhcCCcCCChHHhcchhh
Confidence 468999999999998763
No 58
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.51 E-value=40 Score=21.20 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=14.8
Q ss_pred hcHHHHHHHHHhccCCCC
Q 026402 148 INVDKAVEYIVSCKNLDG 165 (239)
Q Consensus 148 ~~~~~~~~~l~~~Q~~dG 165 (239)
-+++++++||++.+...|
T Consensus 46 Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 46 GDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp SCHHHHHHHHHHCCSSSC
T ss_pred CCHHHHHHHHHhCCCccC
Confidence 379999999999876554
No 59
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.99 E-value=54 Score=20.93 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=18.0
Q ss_pred HHhHHHhhccCChhcHHHHHHHHHhccCCC
Q 026402 135 AICCLSILQRLDKINVDKAVEYIVSCKNLD 164 (239)
Q Consensus 135 al~~l~~l~~~~~~~~~~~~~~l~~~Q~~d 164 (239)
++.+|...+. +++++++||++.+.+.
T Consensus 46 a~~AL~~~~~----nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 46 VEVALAAADD----DLTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHTS----CHHHHHHHHHTCSCSS
T ss_pred HHHHHHHhCC----CHHHHHHHHHHCCCCC
Confidence 4444444433 7899999999877664
No 60
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=31.93 E-value=47 Score=22.77 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=28.0
Q ss_pred CcchhHHHHhHHHhhccCC-hhcHHHHHHHHHhccCCCCCccCC
Q 026402 128 DTRFSYIAICCLSILQRLD-KINVDKAVEYIVSCKNLDGGFGCT 170 (239)
Q Consensus 128 d~~~ty~al~~l~~l~~~~-~~~~~~~~~~l~~~Q~~dGGf~~~ 170 (239)
..+.+|--+.++++...+. ..+-+++..=|...-.++||||+.
T Consensus 57 EAR~vYqni~t~clveklhl~~eE~~~L~~I~~ia~S~~~WGgl 100 (112)
T 2ip6_A 57 QARVVYNKIASQALVDKLHFTAEENKVLAAINELAHSQKGWGEF 100 (112)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence 3678999999999998764 234567888888888889999764
No 61
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.82 E-value=50 Score=20.40 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhccc
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~ 210 (239)
.|..||...+. .+++++++||++++.
T Consensus 25 ~a~~AL~~t~n---~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 25 TALKALAATGR---KTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHTS---CCHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCC---CCHHHHHHHHHhCCC
Confidence 45556666543 579999999999874
No 62
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.50 E-value=58 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhcccc
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCERQVK 211 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~ 211 (239)
.|..||...+ -+++++++||++++..
T Consensus 45 ~a~~AL~~t~----~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 45 VARKALKASG----GDIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHTT----SCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHhC----CCHHHHHHHHHhCCCC
Confidence 3455666544 3799999999998743
No 63
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.79 E-value=44 Score=20.60 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhcccc
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCERQVK 211 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~ 211 (239)
.|..||...+. .+++++++||++++..
T Consensus 35 ~a~~AL~~t~~---~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 35 RAQKALASTGG---RSVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHTTT---SCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHhCCCC
Confidence 34555555432 4799999999998743
No 64
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.73 E-value=49 Score=20.37 Aligned_cols=25 Identities=16% Similarity=-0.056 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhcccc
Q 026402 183 CVGALAIAGALHHVDKDLLGWWLCERQVK 211 (239)
Q Consensus 183 al~aL~~l~~~~~~~~~~~~~~L~~~Q~~ 211 (239)
|+.||...+ .+++++++||+..+.+
T Consensus 26 a~~AL~~~~----~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 26 SRQALMDNG----NNLEAALNVLLTSNKQ 50 (63)
T ss_dssp HHHHHHHTT----SCHHHHHHHHHHHSSC
T ss_pred HHHHHHHhC----CCHHHHHHHHHHCCCC
Confidence 455666543 3699999999988643
No 65
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.42 E-value=63 Score=20.68 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=13.9
Q ss_pred hcHHHHHHHHHhccCCC
Q 026402 148 INVDKAVEYIVSCKNLD 164 (239)
Q Consensus 148 ~~~~~~~~~l~~~Q~~d 164 (239)
-+++++++||.+.+.++
T Consensus 56 Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 56 GDIHAAIEMLLGASGPS 72 (74)
T ss_dssp SCHHHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHhCCCCC
Confidence 37899999999877654
No 66
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.19 E-value=56 Score=18.54 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhc
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCER 208 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~ 208 (239)
.+..||...+ +++++++||+++
T Consensus 25 ~a~~AL~~~~-----n~e~A~~~L~~h 46 (47)
T 2ekk_A 25 HAMEALLNTS-----TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHSC-----SHHHHHHHHHTC
T ss_pred HHHHHHHHcC-----CHHHHHHHHHcC
Confidence 3445555542 699999999875
No 67
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.86 E-value=82 Score=18.65 Aligned_cols=25 Identities=24% Similarity=0.023 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhcccc
Q 026402 183 CVGALAIAGALHHVDKDLLGWWLCERQVK 211 (239)
Q Consensus 183 al~aL~~l~~~~~~~~~~~~~~L~~~Q~~ 211 (239)
++.||...+ -|++++++||++....
T Consensus 27 n~~AL~~~~----Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 27 NLQALIATG----GDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHT----SCHHHHHHHHHHHSCS
T ss_pred HHHHHHHcC----CCHHHHHHHHHhCCCc
Confidence 355555543 5799999999987543
No 68
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=26.12 E-value=47 Score=23.33 Aligned_cols=61 Identities=7% Similarity=0.131 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHccc-CCCCccc---------cccccchHHHHHHHHHHHHhhCCCC----------CcCHHHHHHHHHhc
Q 026402 5 AADKHVKYIISVEK-KKDSFES---------VVMEHLRLNGAYWGLTTLDILGKLD----------AVDEEDVISWILKC 64 (239)
Q Consensus 5 ~~~~~~~yl~~~q~-~dg~~~~---------~~~~~~~~~~~y~al~~l~ll~~~~----------~~~~~~~i~~l~~~ 64 (239)
|.++++.||...+. .+-+|.. ........+...-.+..|.-+|... ..+++++++||.++
T Consensus 35 ~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 35 NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 78899999998763 2233321 0001111222234577777777542 34899999999886
Q ss_pred c
Q 026402 65 Q 65 (239)
Q Consensus 65 q 65 (239)
-
T Consensus 115 ~ 115 (118)
T 4ae4_A 115 A 115 (118)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=26.09 E-value=73 Score=18.67 Aligned_cols=24 Identities=25% Similarity=0.064 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhcc
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCERQ 209 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q 209 (239)
.++.||...+ -|++++++||++.+
T Consensus 28 ~~~~AL~~t~----gnve~Ave~L~~~~ 51 (53)
T 2knz_A 28 ANLQALIATG----GDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHT----SCHHHHHHHHHHCC
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHcC
Confidence 4556666654 37999999998865
No 70
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=25.69 E-value=1.5e+02 Score=24.91 Aligned_cols=77 Identities=18% Similarity=0.069 Sum_probs=44.0
Q ss_pred HHHHHHHHHhccCCCCCccc----CCCC--CCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCC------CCccC
Q 026402 102 ADKVSNYIVGLQNEDGSFSG----DIWG--EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD------GGFGC 169 (239)
Q Consensus 102 ~~~~~~~l~~~Q~~dGgf~~----~~~~--~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~d------GGf~~ 169 (239)
.....+|+++....+|...+ ..+. .......+.|++++..+..-+..-.+.+++-+...|..| |||+.
T Consensus 248 ~~~~~~fl~~~~~~~g~l~~~y~~~tg~~~~~~eS~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yyGG~~~ 327 (350)
T 3ren_A 248 EESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYGGFGD 327 (350)
T ss_dssp CHHHHHHHHHHHHHHSSCCSEEETTTCCBCCCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTTTSCSB
T ss_pred cHHHHHHHHHHHhhcCCcceEEECCCCCcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccCCcccc
Confidence 34568888853222342221 1111 112344556777766665445566788888888877766 88877
Q ss_pred CCCCCCchh
Q 026402 170 TPGGESHSG 178 (239)
Q Consensus 170 ~~~~~s~~~ 178 (239)
......+..
T Consensus 328 ~~~~~~~sf 336 (350)
T 3ren_A 328 EKTNSVYSF 336 (350)
T ss_dssp TTTTBCBHH
T ss_pred cCCCceeee
Confidence 655554433
No 71
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=24.79 E-value=91 Score=26.33 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCC------CCCCCCCCCCCchhHHHHHHHHHH
Q 026402 35 GAYWGLTTLDILGKLDAVDEEDVISWILKCQDES------GGFAGNIGHDPHVLYTLSAVQVLA 92 (239)
Q Consensus 35 ~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~d------Ggf~~~~~~~~~~~~T~~al~~L~ 92 (239)
..++|+.++..+...+..-.+.+++-+...|..| |||+......-|...-+.+|.+..
T Consensus 283 ~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~~~~~~sfdNL~~LlA~~ 346 (350)
T 3ren_A 283 PSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLNALLAFQ 346 (350)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTTTSCSBTTTTBCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccCCcccccCCCceeeeccHHHHHHHH
Confidence 3678888777665444445677888888888777 777765554556555555555543
No 72
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.17 E-value=80 Score=19.36 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhccc
Q 026402 181 FCCVGALAIAGALHHVDKDLLGWWLCERQV 210 (239)
Q Consensus 181 ~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~ 210 (239)
-.+..||...+. .+++++++||++++.
T Consensus 24 ~~a~~AL~~t~~---~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 24 GRAEKALALTGN---QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHHHHHTS---CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHhCCC
Confidence 345666666532 469999999999864
No 73
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.89 E-value=85 Score=19.92 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhccc
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~ 210 (239)
.+..||...+. .+++++++||++++.
T Consensus 25 ~a~~AL~~t~n---~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 25 ACRKAVYYTGN---SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHTS---CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC---CCHHHHHHHHHhCCC
Confidence 45556666542 469999999999874
No 74
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.58 E-value=53 Score=20.06 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhccc
Q 026402 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (239)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~ 210 (239)
.+..||...+ -+++++++||+.++.
T Consensus 25 ~a~~AL~~t~----~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 25 QALKALRATN----NSLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHTT----SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCHHHHHHHHHhCCC
Confidence 4455566554 268999999998864
No 75
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=21.16 E-value=2.4e+02 Score=23.51 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=15.8
Q ss_pred cHHHHHHHHHhc-cCCCC--CccCC
Q 026402 149 NVDKAVEYIVSC-KNLDG--GFGCT 170 (239)
Q Consensus 149 ~~~~~~~~l~~~-Q~~dG--Gf~~~ 170 (239)
..+++++||.+. +.++| ||-..
T Consensus 83 ~A~~~~~fl~~~~~d~~gg~g~~~s 107 (402)
T 1fp3_A 83 AAKAGGEFLLRHARVAPPEKKCAFV 107 (402)
T ss_dssp HHHHHHHHHHHHTBSSTTSCCBCSE
T ss_pred HHHHHHHHHHHhccCcCCCCceEEE
Confidence 457899999874 66664 78755
Done!