BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026403
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZM3|PPCS2_ARATH Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana
GN=PPCS2 PE=2 SV=2
Length = 309
Score = 353 bits (905), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 162/232 (69%), Positives = 191/232 (82%)
Query: 5 LNSEIESFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRY 64
+ EI SFF+S+PP + I + L EFI LNSS G RR+ CVTSGGTTVPLEQRCVRY
Sbjct: 1 MEDEISSFFESSPPQKNMEEILENLNEFIKLNSSSQGGRRIVCVTSGGTTVPLEQRCVRY 60
Query: 65 IDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVC 124
IDNFSSG+RGAASTE+ +K GYAVIFLYRRGTC+PYC SLPDD FLECFE ++++ +QV
Sbjct: 61 IDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRSLPDDPFLECFEFSDKTNIQVH 120
Query: 125 QPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAV 184
+ EAVK A+ D AVA G LLKLPF+TI+EYLQML++IA + + +GPCSMFYLAAAV
Sbjct: 121 TSHLEAVKMAVMDQQTAVAEGSLLKLPFSTIYEYLQMLRLIAEALKDVGPCSMFYLAAAV 180
Query: 185 SDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKMQ 236
SDFYVPWKSM EHKI+SGSGPLD++L QVPKMLSVLR WAP AFCISFK++
Sbjct: 181 SDFYVPWKSMTEHKIESGSGPLDIRLAQVPKMLSVLRSNWAPKAFCISFKLE 232
>sp|Q8GXR5|PPCS1_ARATH Phosphopantothenate--cysteine ligase 1 OS=Arabidopsis thaliana
GN=PPCS1 PE=2 SV=1
Length = 317
Score = 342 bits (878), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 160/233 (68%), Positives = 188/233 (80%), Gaps = 1/233 (0%)
Query: 5 LNSEIESFFDSAPPLNDRAAISQKLKEFIALNSS-ESGTRRVACVTSGGTTVPLEQRCVR 63
+ EI SFF+S+PPL ++ I L +FI LNSS + G RR+ CVTSGGTTVPLEQRCVR
Sbjct: 8 VEDEISSFFESSPPLKNKEEIVANLNQFIELNSSCQGGMRRIVCVTSGGTTVPLEQRCVR 67
Query: 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQV 123
YIDNFSSG+RGAASTE+ +K GYAVIFLYRRGTC+PYC LPDD FLECFE + +QV
Sbjct: 68 YIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRYLPDDPFLECFEFPDAKNIQV 127
Query: 124 CQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAA 183
+S AVK A+ D AAVA G LLKLPF+TI+EYLQML++IA + +GPCSMFYLAAA
Sbjct: 128 HGSHSGAVKMAVMDQQAAVAEGRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAA 187
Query: 184 VSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKMQ 236
VSDFYVPW SM EHKI+SGSGPLD++L QVPKMLS+LR WAP AFCISFK++
Sbjct: 188 VSDFYVPWLSMTEHKIESGSGPLDIRLAQVPKMLSILRSNWAPKAFCISFKLE 240
>sp|Q9HAB8|PPCS_HUMAN Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1
SV=2
Length = 311
Score = 187 bits (475), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCS 102
RRV VTSGGT VPLE R VR++DNFSSG RGA S E + GY V+FLYR + PY
Sbjct: 35 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAH 94
Query: 103 SLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHHAAVAGGLLLKLPFTTIFE 157
P +L + + + +E A+R + A A G L + FTT+ +
Sbjct: 95 RFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLAD 154
Query: 158 YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKML 217
YL +LQ A + LGP +MFYLAAAVSDFYVP M EHKIQS GPL + + VPK+L
Sbjct: 155 YLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLL 214
Query: 218 SVLRKEWAPMAFCISFKMQ 236
S L K+WAP AF ISFK++
Sbjct: 215 SPLVKDWAPKAFIISFKLE 233
>sp|Q9USK7|YJ2I_SCHPO Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC4B3.18 PE=3 SV=1
Length = 316
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 137/229 (59%), Gaps = 7/229 (3%)
Query: 12 FFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSG 71
FF+ P N +S +++FI L +S ++ +A VTSGGT VPLEQ VR+IDNFS+G
Sbjct: 10 FFEENPCPNSLGDVSSLIEDFINL---QSNSQNIAFVTSGGTLVPLEQNTVRFIDNFSAG 66
Query: 72 HRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSL--PDDAFLECFEVTEESAVQVCQPYSE 129
+RGAAS E+ K GY+VIFLYR + P+ P E ++E V Q +
Sbjct: 67 NRGAASAEYFCKSGYSVIFLYRNYSLMPFTRRYEGPWTNLFERSNGSQEKPWIVKQEFQS 126
Query: 130 AVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYV 189
V A+ + L+ +P+TT+ EYL L+ IA + + ++FYLAAAVSDF++
Sbjct: 127 TVFNALNELDTYTKHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHI 186
Query: 190 PWKSMAEHKIQSGSG--PLDMQLLQVPKMLSVLRKEWAPMAFCISFKMQ 236
P K ++EHKIQSGSG L++++ VPK L L WAP A ISFK++
Sbjct: 187 PPKELSEHKIQSGSGSNKLEVKMHPVPKFLRFLVDTWAPEASIISFKLE 235
>sp|Q8VDG5|PPCS_MOUSE Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2
SV=1
Length = 311
Score = 170 bits (431), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 122/199 (61%), Gaps = 5/199 (2%)
Query: 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCS 102
RRV +TSGGT VPLE R VR++DNFSSG RGAAS E + GY V+FLYR + PY
Sbjct: 35 RRVVLITSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFPYAH 94
Query: 103 SLPDDAFLECFEVTEES-----AVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFE 157
P A+L + + +++ + A++ + A A G L + FTT+ +
Sbjct: 95 RFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQEAAAAGTFLAVEFTTLAD 154
Query: 158 YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKML 217
YL +LQ A++ LG +MFYLAAAVSDFY+P M EHKI S GPL + + VPKML
Sbjct: 155 YLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVPKML 214
Query: 218 SVLRKEWAPMAFCISFKMQ 236
S L K+WAP AF +SFK++
Sbjct: 215 SPLVKDWAPKAFVVSFKLE 233
>sp|P40506|PPCS_YEAST Phosphopantothenate--cysteine ligase CAB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CAB2 PE=1
SV=2
Length = 365
Score = 143 bits (361), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 135/254 (53%), Gaps = 32/254 (12%)
Query: 7 SEIESFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYID 66
+E E +F + P + + KEFI L S ++ +TSGGTTVPLE VR+ID
Sbjct: 38 TEEEQYFKTNPKPAYIDELIKDAKEFIDLQYS-LKRNKIVLITSGGTTVPLENNTVRFID 96
Query: 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLP---DDAFLECFEVTEESAVQV 123
NFS+G RGA+S E + GY+VIFL+R + PY S + FL+ +S ++
Sbjct: 97 NFSAGTRGASSAEQFLANGYSVIFLHREFSLTPYNRSFSHSINTLFLDYI----DSEGKI 152
Query: 124 CQPYSEAV--KRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLA 181
++E V + + D + LLL LPFTT+ +YL L+ IA + G C +FYLA
Sbjct: 153 KPEFAENVLKNKKLYDKYMEKEEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG-C-LFYLA 209
Query: 182 AAVSDFYVPWKSMAEHKIQSG-------------------SGPLDMQLLQVPKMLSVLRK 222
AAVSDF+VP+ + +HKIQSG G L + L VPK L L +
Sbjct: 210 AAVSDFFVPYSRLPQHKIQSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVE 269
Query: 223 EWAPMAFCISFKMQ 236
WA A +SFK++
Sbjct: 270 SWATQAMIVSFKLE 283
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 31 EFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIF 90
E I N + G R + +GGT +++ VR I N SSG G A E K G+ V
Sbjct: 185 EKIGNNLKKEGNR--VLILNGGTVEFIDK--VRVISNLSSGKMGVALAEAFCKEGFYVEV 240
Query: 91 LYRRGTCEPY 100
+ G PY
Sbjct: 241 ITAMGLEPPY 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,935,223
Number of Sequences: 539616
Number of extensions: 2903026
Number of successful extensions: 5842
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5827
Number of HSP's gapped (non-prelim): 7
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)