BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026404
         (239 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D0C|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
           Oceanobacillus Iheyensis At 1.9 A Resolution
 pdb|3D0C|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
           Oceanobacillus Iheyensis At 1.9 A Resolution
          Length = 314

 Score = 32.3 bits (72), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 81  MGYAIRTLREEFPALFYRELSFDIYRDDIVFKDPINTFV----GIENYKSIFWALRFHGR 136
           +GY++ T      A+   + + D   D +    P++ ++     +E Y++I  AL     
Sbjct: 88  IGYSVDT------AIELGKSAIDSGADCVXIHQPVHPYITDAGAVEYYRNIIEALDAPSI 141

Query: 137 IFFRALWL--DIISVWQPLENVIMVRWTIHGVPRVPWESRG 175
           I+F+   L  D+I    PL+ ++ +++ I+ + RV    R 
Sbjct: 142 IYFKDAHLSDDVIKELAPLDKLVGIKYAINDIQRVTQVXRA 182


>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
           Burkholderia Pseudomallei, Iodide Soak
 pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
           Burkholderia Pseudomallei, Iodide Soak
 pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
           Burkholderia Pseudomallei, Iodide Soak
 pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
           Burkholderia Pseudomallei, Iodide Soak
          Length = 362

 Score = 27.7 bits (60), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 84  AIRTLREEFPALFYRELSFDIYRDDIVFKDPINTFVGIENYKSIFWALRF 133
           A+R LR   P      L FD+YRDD   +  + T  G      +  ALR 
Sbjct: 283 ALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTT-DGFGRLGHLIGALRL 331


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,694,721
Number of Sequences: 62578
Number of extensions: 325056
Number of successful extensions: 707
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 2
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)