BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026404
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32KT5|CF136_BOVIN Uncharacterized protein C6orf136 homolog OS=Bos taurus PE=2 SV=1
Length = 315
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 29/193 (15%)
Query: 63 APVKPSKEEE-EKHNYYVNMGYAIRTLREEFPALFYRELSFDIYRDDIVFKDPINTFVGI 121
+P PS + E+H + LR+E P LF + +Y D+ F IN + +
Sbjct: 134 SPATPSGDPSMEEH-----LAVMYERLRQELPNLFLHSHDYTLYSSDVEF---INEILNM 185
Query: 122 ENYKSIFWAL-----RFHGRIFFRALWLDIISVWQPLEN-VIMVRWTIHGVP-------- 167
++ L RF +F L L+I+ + + EN + RW + G+P
Sbjct: 186 RTKGRTWYILSLTLCRFLAWNYFAQLRLEILQLTRHPENWTLQARWRLVGLPIHLLFLRF 245
Query: 168 --RVPWESRGRFDGTSEYKLDRNGKIYEHRVDNIA-LNSPPPKFRVLAVEDLIQSIGCPS 224
R E +D S + L+ NG I HR+D + +SPP + L V L+ ++G S
Sbjct: 246 YKRDKEELYRTYDAYSTFYLNSNGLICRHRLDKLMPSHSPPEPVKKLLVGALV-ALGL-S 303
Query: 225 TPKPTYFEISSSD 237
P+P + S D
Sbjct: 304 EPEPN-LHLCSKD 315
>sp|Q5TM64|CF136_MACMU Uncharacterized protein C6orf136 homolog OS=Macaca mulatta PE=4
SV=1
Length = 172
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 22/158 (13%)
Query: 88 LREEFPALFYRELSFDIYRDDIVFKDPINTFVGIENYKSIFWAL-----RFHGRIFFRAL 142
LR+E P LF + + +Y D+ F IN + I ++ L RF +F L
Sbjct: 12 LRQELPKLFLQSHDYSLYSLDVEF---INEILNIRTKGRTWYILSLTLCRFLAWNYFSQL 68
Query: 143 WLDIISVWQPLEN-VIMVRWTIHGVP----------RVPWESRGRFDGTSEYKLDRNGKI 191
L+++ + + EN + RW + G+P R E +D S + L+ +G I
Sbjct: 69 RLEVLQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDELYRTYDAYSTFYLNSSGLI 128
Query: 192 YEHRVDNIA-LNSPPPKFRVLAVEDLIQSIGCPSTPKP 228
HR+D + +SPP + L V L+ ++G S P+P
Sbjct: 129 CRHRLDKLMPSHSPPTPVKKLLVGALV-ALGL-SEPEP 164
>sp|Q5SQH8|CF136_HUMAN Uncharacterized protein C6orf136 OS=Homo sapiens GN=C6orf136 PE=2
SV=1
Length = 315
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 22/158 (13%)
Query: 88 LREEFPALFYRELSFDIYRDDIVFKDPINTFVGIENYKSIFWAL-----RFHGRIFFRAL 142
LR+E P LF + + +Y D+ F IN + I ++ L RF +F L
Sbjct: 155 LRQELPKLFLQSHDYSLYSLDVEF---INEILNIRTKGRTWYILSLTLCRFLAWNYFAHL 211
Query: 143 WLDIISVWQPLEN-VIMVRWTIHGVP----------RVPWESRGRFDGTSEYKLDRNGKI 191
L+++ + + EN + RW + G+P R E +D S + L+ +G I
Sbjct: 212 RLEVLQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLI 271
Query: 192 YEHRVDNI-ALNSPPPKFRVLAVEDLIQSIGCPSTPKP 228
HR+D + +SPP + L V L+ ++G S P+P
Sbjct: 272 CRHRLDKLMPSHSPPTPVKKLLVGALV-ALGL-SEPEP 307
>sp|Q6MG12|CF136_RAT Uncharacterized protein C6orf136 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 172
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 88 LREEFPALFYRELSFDIYRDDIVFKDPINTFVGIENYKSIFWAL-----RFHGRIFFRAL 142
LR+E P LF R + IY D+ F IN + + F+ + RF +F
Sbjct: 12 LRQELPTLFLRSHDYTIYSMDVEF---INEILNVRTKGRTFYVMSLTLCRFLAWNYFAQF 68
Query: 143 WLDIISVWQPLEN-VIMVRWTIHGVP---------RVPWESRGR-FDGTSEYKLDRNGKI 191
L+I+ + + EN + RW + G+P R E R FD S + L+ +G I
Sbjct: 69 RLEILQLTRHPENWTLQARWRLIGLPVHMLFLRFYRRDKEDLYRTFDAFSTFYLNSSGLI 128
Query: 192 YEHRVDNIA-LNSPPPKFRVLAVEDLIQSIGCPSTPKPTYFEISSS 236
H +D + +SP + L V L+ ++G S P+P+ S +
Sbjct: 129 CRHHLDKLMPSHSPSTPVKKLLVGALV-ALGL-SEPEPSLHLCSKT 172
>sp|P79166|MSHR_HORSE Melanocyte-stimulating hormone receptor OS=Equus caballus GN=MC1R
PE=3 SV=2
Length = 317
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 119 VGIENYKSIFWALRFHGRIFFRALWLDIISVW 150
+ ++ Y SIF+ALR+H + +W I+++W
Sbjct: 138 IAVDRYISIFYALRYHSIMMLPRVWRAIVAIW 169
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 49 SEVGRNVRLYGQFSAPVKPSKEEEEKHNY-------YVNMGYAIRTLREEFPALFYRELS 101
SEV + +G+ +K E+EK ++ V GY +R E A EL+
Sbjct: 109 SEVKKQTGEFGKVFEETCKAKSEDEKQSWKQALAAVAVMAGYDLRKWPSE--AAMIEELA 166
Query: 102 FDIYRDDIVFKDPINTFVGIENY 124
D+ R + D VGIEN+
Sbjct: 167 EDVLRKTMTPSDDFGDLVGIENH 189
>sp|Q864I8|MSHR_SEMEN Melanocyte-stimulating hormone receptor OS=Semnopithecus entellus
GN=MC1R PE=3 SV=1
Length = 317
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 119 VGIENYKSIFWALRFHGRIFFRALWLDIISVW 150
+ ++ Y SIF+ALR+H + R W + ++W
Sbjct: 138 IAVDRYISIFYALRYHSIVTLRRAWRVVAAIW 169
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
GN=USP54 PE=1 SV=4
Length = 1684
Score = 31.6 bits (70), Expect = 4.6, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 164 HGVPRVPWESRGRFDGTSEYKLDRNGKIYEHRVDNIALNS-PPPKFRVLAVEDLIQSIGC 222
G+P+ P + + E GK+ R DN + + PP + R +A E L Q
Sbjct: 972 QGLPKAPGWTEKNSHHSWEPLDAPEGKLQGSRCDNSSCSKLPPQEGRGIAQEQLFQEKKD 1031
Query: 223 PSTPKPTYFEISSSDR 238
P+ P P I++S+R
Sbjct: 1032 PANPSPVMPGIATSER 1047
>sp|Q45GW3|IQUB_RAT IQ and ubiquitin-like domain-containing protein OS=Rattus
norvegicus GN=Iqub PE=2 SV=2
Length = 790
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 147 ISVWQPLENVIMVRWTIHGVPRVPWES--RGRFDGTSEYKLDR----NGKIYEHRVDN 198
+S W L +++MVRW H V PW + +GT+ KL+ G+++ H++ +
Sbjct: 685 LSAWDDLNDLVMVRWNKH-VEWSPWNCILLTKDEGTAHLKLESIEKGYGRLFIHKIKH 741
>sp|O94410|MU163_SCHPO Meiotically up-regulated gene 163 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug163 PE=1 SV=1
Length = 186
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 24/141 (17%)
Query: 77 YYVNMGYAIRTLREEFPALFYRELS---FDIYRDDIVFKDPIN--TFVGIENYKSIFWAL 131
Y V G I+ L++ P + YR L D + + ++F + +N G+ YK IF
Sbjct: 38 YNVETGKTIQILQDLVPLVLYRALPDAILDHHVELVIFPNSLNFPRIEGLTIYKFIFKT- 96
Query: 132 RFHGRIFFRALW-------LDII-SVWQPLENVIMVRWTIHGVPRVPWES--RGRFDGTS 181
R+ + + +DII + +EN VR+++ + W + +
Sbjct: 97 ---ARLLLSSTYGSSAKRPIDIIHQLHSSMENK-NVRYSM----KCNWIASPNDEYTWVF 148
Query: 182 EYKLDRNGKIYEHRVDNIALN 202
+ +D+ G IY H +DN+ N
Sbjct: 149 HFDIDKKGIIYRHIIDNLERN 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,568,004
Number of Sequences: 539616
Number of extensions: 4079252
Number of successful extensions: 8395
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8375
Number of HSP's gapped (non-prelim): 25
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)