Query 026404
Match_columns 239
No_of_seqs 157 out of 437
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 100.0 3.9E-33 8.5E-38 221.5 14.1 112 83-194 2-113 (113)
2 KOG4457 Uncharacterized conser 99.9 5.7E-24 1.2E-28 179.2 12.0 141 78-218 32-188 (202)
3 TIGR02096 conserved hypothetic 99.2 4.5E-10 9.8E-15 87.9 12.5 108 89-204 5-122 (129)
4 PF12680 SnoaL_2: SnoaL-like d 99.1 1E-09 2.2E-14 80.6 11.0 86 102-194 17-102 (102)
5 PF07366 SnoaL: SnoaL-like pol 99.1 1.1E-09 2.5E-14 86.1 11.8 103 88-196 3-115 (126)
6 cd00781 ketosteroid_isomerase 98.9 2.3E-08 5E-13 77.8 9.9 100 94-204 15-118 (122)
7 KOG2546 Abl interactor ABI-1, 98.5 1.4E-08 3.1E-13 96.5 -1.8 133 56-191 37-179 (483)
8 PRK08241 RNA polymerase factor 96.9 0.015 3.1E-07 53.5 11.9 102 88-203 220-325 (339)
9 COG5485 Predicted ester cyclas 96.9 0.0057 1.2E-07 49.9 7.7 84 105-196 30-119 (131)
10 TIGR02960 SigX5 RNA polymerase 96.7 0.025 5.3E-07 51.4 11.3 96 95-204 217-316 (324)
11 PF07858 LEH: Limonene-1,2-epo 96.5 0.041 9E-07 44.9 10.4 93 102-204 24-117 (125)
12 TIGR02246 conserved hypothetic 96.0 0.23 5E-06 38.0 11.9 81 83-166 4-90 (128)
13 COG4319 Ketosteroid isomerase 95.7 0.22 4.8E-06 41.4 11.1 83 102-189 32-120 (137)
14 PF13474 SnoaL_3: SnoaL-like d 95.6 0.56 1.2E-05 35.3 12.6 97 93-194 10-114 (121)
15 PF14534 DUF4440: Domain of un 94.1 1.1 2.5E-05 32.5 10.3 86 95-186 12-99 (107)
16 cd00531 NTF2_like Nuclear tran 93.2 1.9 4.2E-05 31.4 10.3 103 87-196 3-121 (124)
17 COG3631 Ketosteroid isomerase- 92.4 1.8 3.9E-05 35.5 9.9 111 84-204 6-124 (133)
18 PF03284 PHZA_PHZB: Phenazine 87.2 9.6 0.00021 32.3 10.2 103 102-223 39-151 (162)
19 PF02136 NTF2: Nuclear transpo 81.4 21 0.00046 27.1 10.0 94 87-186 5-105 (118)
20 PF13577 SnoaL_4: SnoaL-like d 78.5 26 0.00056 26.4 11.9 83 83-168 7-95 (127)
21 PRK09636 RNA polymerase sigma 56.5 1.1E+02 0.0023 27.6 9.5 34 98-131 187-230 (293)
22 COG4308 LimA Limonene-1,2-epox 48.6 1E+02 0.0023 25.4 7.2 93 99-204 26-120 (130)
23 COG4922 Uncharacterized protei 46.2 1.6E+02 0.0034 24.2 7.9 68 118-196 43-111 (129)
24 PF08830 DUF1806: Protein of u 24.2 3.5E+02 0.0076 21.9 6.5 63 123-192 30-92 (114)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=100.00 E-value=3.9e-33 Score=221.49 Aligned_cols=112 Identities=49% Similarity=0.973 Sum_probs=108.6
Q ss_pred HHHHHHHHhchhhhcCCCccceeecceEEeCCCCccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEE
Q 026404 83 YAIRTLREEFPALFYRELSFDIYRDDIVFKDPINTFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWT 162 (239)
Q Consensus 83 ~~i~~Lred~p~lf~~~l~~~IY~~DV~F~DP~~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWt 162 (239)
+++++||+|||++|+++++++||++||+|+||+++|+|+++|+++||++++++.++|.+++++|+++++.++++|.+||+
T Consensus 2 ~~~~~Lr~D~~~~f~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~ 81 (113)
T PF10184_consen 2 DVIRTLREDLPRFFTGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWR 81 (113)
T ss_pred hHHHHHHHHHHHHhcCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999989999999999999885669999999
Q ss_pred EEEEeCCCCCcceEEEEEEEEEEcCCCcEEEE
Q 026404 163 IHGVPRVPWESRGRFDGTSEYKLDRNGKIYEH 194 (239)
Q Consensus 163 m~g~prL~w~~~i~~dG~S~y~ld~dGkI~~H 194 (239)
|+|.++++|++.+.++|+|+|++|++|+|++|
T Consensus 82 ~~g~~~l~w~p~~~~~G~S~~~ln~~g~I~~H 113 (113)
T PF10184_consen 82 LRGVPRLPWRPRISFDGTSTYTLNSDGLIYRH 113 (113)
T ss_pred EEEEeCCCcCCcEEEEEEEEEEECCCCcEEeC
Confidence 99999999999999999999999999999999
No 2
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=5.7e-24 Score=179.24 Aligned_cols=141 Identities=30% Similarity=0.521 Sum_probs=126.2
Q ss_pred hhhHHHHHHHHHHhchhhhcCCCccceeecceEEeCCCC--ccccHHHHHHHHHHHHhcccccccceEEEEEEEE-eecC
Q 026404 78 YVNMGYAIRTLREEFPALFYRELSFDIYRDDIVFKDPIN--TFVGIENYKSIFWALRFHGRIFFRALWLDIISVW-QPLE 154 (239)
Q Consensus 78 ~~~l~~~i~~Lred~p~lf~~~l~~~IY~~DV~F~DP~~--~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~-~~~~ 154 (239)
..+|+.+.++||+++|.||...+||++|++||+|.|-+. +.+|++.|...|+.++++++.++..++|||+++. ..++
T Consensus 32 pe~L~~~yerLr~tlPklF~~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h~d~ 111 (202)
T KOG4457|consen 32 PEQLEHVYERLRETLPKLFRRRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPHIDE 111 (202)
T ss_pred hHHHHHHHHHHHHHhHHHHhhcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecccCCC
Confidence 348999999999999999999999999999999999997 6889999999999999999999999999999998 5778
Q ss_pred CEEEEEEEEEEEe--CCCCC-----------cceEEEEEEEEEEcCCCcEEEEEecceecCCCCCCcccccHHHHHH
Q 026404 155 NVIMVRWTIHGVP--RVPWE-----------SRGRFDGTSEYKLDRNGKIYEHRVDNIALNSPPPKFRVLAVEDLIQ 218 (239)
Q Consensus 155 ~~i~vRWtm~g~p--rL~w~-----------~~i~~dG~S~y~ld~dGkI~~Hrvd~v~~d~~~~k~~~l~v~~l~~ 218 (239)
+++.+||++.|.+ ++.|+ ...++||.|++++|++|.||+|++|++|+|.+++.++.|.+..|..
T Consensus 112 ~Tvr~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~~GlI~kh~ldK~mpdes~~pVkkll~~al~~ 188 (202)
T KOG4457|consen 112 GTVRCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDGNGLIYKHTLDKMMPDESKSPVKKLLTSALEK 188 (202)
T ss_pred ceEEEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECCCceEEeeehhhhCcccCcchhhhcchhcccc
Confidence 9999999999974 44444 2457999999999999999999999999999988777776666654
No 3
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.19 E-value=4.5e-10 Score=87.94 Aligned_cols=108 Identities=18% Similarity=0.308 Sum_probs=85.3
Q ss_pred HHhchhhhcCCCc--cceeecceEEeCCCC--ccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEE
Q 026404 89 REEFPALFYRELS--FDIYRDDIVFKDPIN--TFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIH 164 (239)
Q Consensus 89 red~p~lf~~~l~--~~IY~~DV~F~DP~~--~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~ 164 (239)
++-|..+-.++.+ .++|++|++|.||.. ...|++.++.++..+.. .+.+.+++++.+...+++.+.+.|+++
T Consensus 5 ~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~v~~~~~~~ 80 (129)
T TIGR02096 5 QHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRT----AFPDLLVDVVVCRNDEGVRVAAEWTVH 80 (129)
T ss_pred HHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHH----hCchhhceeEEEEecCCcEEEEEEEEe
Confidence 3334444455655 699999999999975 57789999999886653 368899999988776445999999999
Q ss_pred EEeCCC------CCcceEEEEEEEEEEcCCCcEEEEEecceecCCC
Q 026404 165 GVPRVP------WESRGRFDGTSEYKLDRNGKIYEHRVDNIALNSP 204 (239)
Q Consensus 165 g~prL~------w~~~i~~dG~S~y~ld~dGkI~~Hrvd~v~~d~~ 204 (239)
|+...+ -+.++.++|++.|+++ +|||++|++ +||..
T Consensus 81 g~~~g~~~g~~~~g~~~~~~~~~~~~~~-~gkI~~~~~---y~D~~ 122 (129)
T TIGR02096 81 GTYRTAFLGLPASGKTYSIRGVTFFVFD-DGKIKRETT---YYNLA 122 (129)
T ss_pred eeeccccCCCCCCCCEEEeeeeEEEEEe-CCEEEEEEE---EecHH
Confidence 986432 3467899999999997 899999998 77755
No 4
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.12 E-value=1e-09 Score=80.56 Aligned_cols=86 Identities=28% Similarity=0.519 Sum_probs=74.2
Q ss_pred cceeecceEEeCCCCccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCCCCCcceEEEEEE
Q 026404 102 FDIYRDDIVFKDPINTFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRVPWESRGRFDGTS 181 (239)
Q Consensus 102 ~~IY~~DV~F~DP~~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL~w~~~i~~dG~S 181 (239)
.++|++|+.|.||..+.+|.+++...+..+.. .+.+.++++.++... ++.+.+.|+++++.. +-+.++.+.|++
T Consensus 17 ~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-gd~v~~~~~~~~~~~-~~g~~~~~~~~~ 90 (102)
T PF12680_consen 17 AALFAPDAVFHDPGGTLRGREAIREFFEEFFE----SFPDIRFEIHDIFAD-GDRVVVEWTVTGTTP-PTGQPISFRGCS 90 (102)
T ss_dssp HHTEEEEEEEEETTSEEESHHHHHHHHHHHHH----HEEEEEEEEEEEEEE-TTEEEEEEEEEEEET-TTSCEEEEEEEE
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHh----cCCceEEEEEEEEEc-CCEEEEEEEEEEEEc-CCCCEEEEEEEE
Confidence 58999999999997799999999999876543 368999999999776 889999999999732 345778999999
Q ss_pred EEEEcCCCcEEEE
Q 026404 182 EYKLDRNGKIYEH 194 (239)
Q Consensus 182 ~y~ld~dGkI~~H 194 (239)
.+++ +||||++|
T Consensus 91 ~~~~-~dgkI~~~ 102 (102)
T PF12680_consen 91 VFRF-EDGKIVEH 102 (102)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCEEEEC
Confidence 9999 58999998
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.12 E-value=1.1e-09 Score=86.11 Aligned_cols=103 Identities=29% Similarity=0.491 Sum_probs=84.9
Q ss_pred HHHhchhhhc-CCCc--cceeecceEEeCCC-CccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEE
Q 026404 88 LREEFPALFY-RELS--FDIYRDDIVFKDPI-NTFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTI 163 (239)
Q Consensus 88 Lred~p~lf~-~~l~--~~IY~~DV~F~DP~-~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm 163 (239)
+++.|-.++. ++++ .++|++|+.+.+|. ....|+++|+..+..+.. .|++.++++.++... ++.+.++|++
T Consensus 3 v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~----afPD~~~~i~~~~~~-gd~v~~~~~~ 77 (126)
T PF07366_consen 3 VRRFYEEVWNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRA----AFPDLRFEIEDVVAE-GDRVAVRWTF 77 (126)
T ss_dssp HHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHH----HSTTTEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHH----HCCCCEEEEEEEEEE-CCEEEEEEEE
Confidence 4455555543 3455 69999999999987 689999999999876653 589999999998887 8999999999
Q ss_pred EEEeCCCC------CcceEEEEEEEEEEcCCCcEEEEEe
Q 026404 164 HGVPRVPW------ESRGRFDGTSEYKLDRNGKIYEHRV 196 (239)
Q Consensus 164 ~g~prL~w------~~~i~~dG~S~y~ld~dGkI~~Hrv 196 (239)
+|++..++ ++++.+.|++.|+++ +|||++|+.
T Consensus 78 ~Gth~g~~~g~~ptgk~v~~~~~~~~~~~-~gkI~e~~~ 115 (126)
T PF07366_consen 78 TGTHTGEFMGIPPTGKPVEFRGMSIFRFE-DGKIVEEWV 115 (126)
T ss_dssp EEEESSEBTTBE-TTEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred EEeecCCcCCcCCCCCEEEEEEEEEEEEE-CCEEEEEEE
Confidence 99987544 357899999999998 599999997
No 6
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=98.86 E-value=2.3e-08 Score=77.80 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=75.0
Q ss_pred hhhcCCCc--cceeecceEEeCCCC--ccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCC
Q 026404 94 ALFYRELS--FDIYRDDIVFKDPIN--TFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRV 169 (239)
Q Consensus 94 ~lf~~~l~--~~IY~~DV~F~DP~~--~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL 169 (239)
.+-.++++ .++|++|++|.||.. .++|+++++.++..+.. .+...++.+...... ++.+.+.|++++.+.
T Consensus 15 a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~----~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~- 88 (122)
T cd00781 15 AVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLG----GAKRLELTGPVRASH-GGEAAFAFRVEFEWE- 88 (122)
T ss_pred HHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhc----cCceEEecCceeeec-CCEEEEEEEEEEEeC-
Confidence 34455665 699999999999975 59999999999876532 133444444333333 678888999987653
Q ss_pred CCCcceEEEEEEEEEEcCCCcEEEEEecceecCCC
Q 026404 170 PWESRGRFDGTSEYKLDRNGKIYEHRVDNIALNSP 204 (239)
Q Consensus 170 ~w~~~i~~dG~S~y~ld~dGkI~~Hrvd~v~~d~~ 204 (239)
+.+..+.|++.|+|+++|||.+++. +|+..
T Consensus 89 --g~~~~~~~~~v~~~~~dGkI~~~~~---y~d~~ 118 (122)
T cd00781 89 --GQPCVVRVIDVMRFDADGRIVSMRA---YWGPV 118 (122)
T ss_pred --CceEEEEEEEEEEECCCccChHHHH---hcCcc
Confidence 5678999999999988899999997 77654
No 7
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=1.4e-08 Score=96.51 Aligned_cols=133 Identities=32% Similarity=0.336 Sum_probs=117.2
Q ss_pred ccccCcCCCCCCC----c----hhhhccchhhh--HHHHHHHHHHhchhhhcCCCccceeecceEEeCCCCccccHHHHH
Q 026404 56 RLYGQFSAPVKPS----K----EEEEKHNYYVN--MGYAIRTLREEFPALFYRELSFDIYRDDIVFKDPINTFVGIENYK 125 (239)
Q Consensus 56 ~~~~~fs~~~~~~----~----~~~~~~~f~~~--l~~~i~~Lred~p~lf~~~l~~~IY~~DV~F~DP~~~f~Gl~~Yk 125 (239)
+.|.| |++++.. + ++.....|++| ++.+++.|+.+.+.|+.-+...++|+.+|.|.++...++||..|+
T Consensus 37 dnYiQ-s~~kk~aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ihkekvArreIg~lt 115 (483)
T KOG2546|consen 37 DNYIQ-SADKKAALEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVDIHKEKVARREIGNLT 115 (483)
T ss_pred hchhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheecchhhhhhhcccee
Confidence 45777 8877663 1 12223459999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCCCCCcceEEEEEEEEEEcCCCcE
Q 026404 126 SIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRVPWESRGRFDGTSEYKLDRNGKI 191 (239)
Q Consensus 126 ~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL~w~~~i~~dG~S~y~ld~dGkI 191 (239)
.++.+++++..|++.++...|.-++++ -+..+++|.-||+ |..|.....++|+++++|+.+|.-
T Consensus 116 tnk~~~r~hkiIap~nl~~~iryvrkP-id~~mLd~igHGI-r~~~~~rg~~~g~~t~~l~rs~ps 179 (483)
T KOG2546|consen 116 TNKGLSRQHKIIAPANLEVPIRYVRKP-IDYSMLDDIGHGI-RGSWETRGRFDGTSTGKLSRSGPS 179 (483)
T ss_pred eccccccccceeccccCCCCccceecc-ccceeeecccccc-ccccccccCcCcccccccCCCCCc
Confidence 999999999999999999999999998 5699999999998 778999999999999999987743
No 8
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=96.90 E-value=0.015 Score=53.50 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=66.7
Q ss_pred HHHhchhhhcCCCc--cceeecceEEeCCCCc--cccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEE
Q 026404 88 LREEFPALFYRELS--FDIYRDDIVFKDPINT--FVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTI 163 (239)
Q Consensus 88 Lred~p~lf~~~l~--~~IY~~DV~F~DP~~~--f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm 163 (239)
+++-+..+-.++++ .+++++||++.+|... +.|.+++..+|..+.... .+...++... . ..++.+.+.+..
T Consensus 220 v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~--~~~~~~~~~~--~-~~g~~v~~~~~~ 294 (339)
T PRK08241 220 LARYVAAFEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGA--GCGGSRLVPT--R-ANGQPAFAQYMR 294 (339)
T ss_pred HHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhcccc--CCCceEEEEe--e-cCCCeEEEEEEE
Confidence 33333344445555 6899999999999864 999999999876542111 1234444332 2 335666654321
Q ss_pred EEEeCCCCCcceEEEEEEEEEEcCCCcEEEEEecceecCC
Q 026404 164 HGVPRVPWESRGRFDGTSEYKLDRNGKIYEHRVDNIALNS 203 (239)
Q Consensus 164 ~g~prL~w~~~i~~dG~S~y~ld~dGkI~~Hrvd~v~~d~ 203 (239)
.. -+....+.|++.|+++ ||||.+-+. +||.
T Consensus 295 ---~~--~g~~~~~~~v~v~~v~-dGkI~~~~~---y~d~ 325 (339)
T PRK08241 295 ---DP--DGGGHRPWALHVLELR-GGRIAHVTS---FLDT 325 (339)
T ss_pred ---cC--CCCeeecceEEEEEEe-CCEEEEEEE---EcCh
Confidence 11 2346788899999997 899999987 7775
No 9
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=96.86 E-value=0.0057 Score=49.94 Aligned_cols=84 Identities=24% Similarity=0.357 Sum_probs=63.0
Q ss_pred eecceEEeCCCCccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCC------CCCcceEEE
Q 026404 105 YRDDIVFKDPINTFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRV------PWESRGRFD 178 (239)
Q Consensus 105 Y~~DV~F~DP~~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL------~w~~~i~~d 178 (239)
+-+|+++-+ +.-.|+++|..++- +... .+.+.+|++..+... ++.+..|=++.++|+. +.++.+.|.
T Consensus 30 fv~~~v~~n--g~~~glsgyr~ml~--~df~--aiPdl~f~ie~lvae-~~~vaarl~Fdctp~G~i~Gip~nGkrV~Fs 102 (131)
T COG5485 30 FVDGNVMHN--GRLQGLSGYREMLV--RDFS--AIPDLSFEIERLVAE-GDRVAARLTFDCTPSGEIMGIPPNGKRVRFS 102 (131)
T ss_pred CCcCeeeeC--CceechHHHHHHHH--hhHh--hCCCcceEEEEEeec-CCceEEEEEEccCcCceEeccCCCCcEEEee
Confidence 344555543 35689999999963 3333 589999999997766 8899999999999863 345677887
Q ss_pred EEEEEEEcCCCcEEEEEe
Q 026404 179 GTSEYKLDRNGKIYEHRV 196 (239)
Q Consensus 179 G~S~y~ld~dGkI~~Hrv 196 (239)
-.-.|+| .+|||++|+-
T Consensus 103 e~vfy~f-~~~KI~~vws 119 (131)
T COG5485 103 ENVFYEF-ENGKIVEVWS 119 (131)
T ss_pred hhhhhhh-cCCeEEeeeh
Confidence 7777777 4899999983
No 10
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=96.65 E-value=0.025 Score=51.43 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=66.8
Q ss_pred hhcCCCc--cceeecceEEeCCCC--ccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCCC
Q 026404 95 LFYRELS--FDIYRDDIVFKDPIN--TFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRVP 170 (239)
Q Consensus 95 lf~~~l~--~~IY~~DV~F~DP~~--~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL~ 170 (239)
+-.++++ .+++++||+|.+|.. .+.|.+.....|..+.-.. .+...++.. .. ..++.+.+.|....
T Consensus 217 ~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~--~~~~~~~~~--~~-~~g~~~~v~~~~~~----- 286 (324)
T TIGR02960 217 FESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGE--GAAGMRLLP--TI-ANGQPAAAMYMRRP----- 286 (324)
T ss_pred HHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccc--cCCceeEEE--ee-ecCCceEEEEEEcC-----
Confidence 3345555 589999999999974 6999999999877551011 234444433 33 33667777774221
Q ss_pred CCcceEEEEEEEEEEcCCCcEEEEEecceecCCC
Q 026404 171 WESRGRFDGTSEYKLDRNGKIYEHRVDNIALNSP 204 (239)
Q Consensus 171 w~~~i~~dG~S~y~ld~dGkI~~Hrvd~v~~d~~ 204 (239)
-+....+.|+..+++ +||||...+. ++|.+
T Consensus 287 ~~~~~~~~~v~~~~~-~dGkI~~~~~---~~~~~ 316 (324)
T TIGR02960 287 DAERHTAFQLHVLEI-RGGRITHVTA---FLDGP 316 (324)
T ss_pred CCCeeeeeEEEEEEE-cCCcEEEEEE---EcCCH
Confidence 134578999999999 5999999987 88876
No 11
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=96.48 E-value=0.041 Score=44.87 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=61.4
Q ss_pred cceeecc-eEEeCCCCccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCCCCCcceEEEEE
Q 026404 102 FDIYRDD-IVFKDPINTFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRVPWESRGRFDGT 180 (239)
Q Consensus 102 ~~IY~~D-V~F~DP~~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL~w~~~i~~dG~ 180 (239)
..+.++| +...-|+.+++|+++.+..+..+ .. .+....++|+.+... + .+.+.+++-..-.-..+..+.+--+
T Consensus 24 ~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~--~~--~~~~~e~~i~~iaad-g-~~VltER~D~l~~~dG~~~~~~~V~ 97 (125)
T PF07858_consen 24 ASLFDDDAVYHNVPLPPIRGRDAIRAFLRGF--LD--SLSGFEFDIHRIAAD-G-DVVLTERTDVLRFADGPLRIQFPVC 97 (125)
T ss_dssp HHCEECC-EEEETTTEEEESHHHHHHHHHCC--HC--CCEEEEEEEEEEEEE-T-TEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred HHhcCCCcEEEeCCCCCcccHHHHHHHHHHH--hc--ccceeEEEEEEEeec-C-CEEEEEeEeeeeeecCCeEEEEEEE
Confidence 3677899 66667999999999999997644 12 467788899997765 4 4556777776432111123444444
Q ss_pred EEEEEcCCCcEEEEEecceecCCC
Q 026404 181 SEYKLDRNGKIYEHRVDNIALNSP 204 (239)
Q Consensus 181 S~y~ld~dGkI~~Hrvd~v~~d~~ 204 (239)
-++.+. ||||..-|+ |||-.
T Consensus 98 GvfEv~-dGkI~~WRD---YFD~~ 117 (125)
T PF07858_consen 98 GVFEVR-DGKITLWRD---YFDLA 117 (125)
T ss_dssp EEEEEE-TTEEEEEEE---E--HH
T ss_pred EEEEEE-CCEEEEEec---cCCHH
Confidence 444554 799999998 77754
No 12
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=95.98 E-value=0.23 Score=38.03 Aligned_cols=81 Identities=20% Similarity=0.159 Sum_probs=51.3
Q ss_pred HHHHHHHHhchh-hhcCCCc--cceeecceEEeCCCC-ccccHHHHHHHHHHHHhcccccccc--eEEEEEEEEeecCCE
Q 026404 83 YAIRTLREEFPA-LFYRELS--FDIYRDDIVFKDPIN-TFVGIENYKSIFWALRFHGRIFFRA--LWLDIISVWQPLENV 156 (239)
Q Consensus 83 ~~i~~Lred~p~-lf~~~l~--~~IY~~DV~F~DP~~-~f~Gl~~Yk~~f~~Lr~~~~~~f~~--~~feV~~i~~~~~~~ 156 (239)
..|+.|.+.|.. +..++++ .++|++|+.|.++.. .++|++++..++..+... .... .++++..+....++.
T Consensus 4 ~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~ 80 (128)
T TIGR02246 4 RAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAG---PYKGTRVTIDVIEVRFLGPDL 80 (128)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcc---cCCCcEEEeeeEEEEecCCCE
Confidence 346666666666 4455666 699999999985544 689999999998644321 1222 566666666554556
Q ss_pred EEEEEEEEEE
Q 026404 157 IMVRWTIHGV 166 (239)
Q Consensus 157 i~vRWtm~g~ 166 (239)
+.+.+..++.
T Consensus 81 A~~~~~~~~~ 90 (128)
T TIGR02246 81 AIVHAIQTIT 90 (128)
T ss_pred EEEEEEEEEE
Confidence 6554444443
No 13
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=95.68 E-value=0.22 Score=41.40 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=57.7
Q ss_pred cceeecceEEeCCCC-ccccHHHHHHHHHHHHhcccccccceEEEEEEEEe-ecCCEEEEE--EEEEEEeCCCCCcceEE
Q 026404 102 FDIYRDDIVFKDPIN-TFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQ-PLENVIMVR--WTIHGVPRVPWESRGRF 177 (239)
Q Consensus 102 ~~IY~~DV~F~DP~~-~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~-~~~~~i~vR--Wtm~g~prL~w~~~i~~ 177 (239)
.+.|++|++|-||.+ .+.|.+.|+..|...-.+. -....|++.++.. .+++.+++. |.++++ ..-++....
T Consensus 32 ~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~---~~~~~f~~~el~v~~~GD~a~~~~~~~~~~~--~~dg~~~~~ 106 (137)
T COG4319 32 ADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMG---IGPLKFTLEELQVHESGDVAFVTALLLLTGT--KKDGPPADL 106 (137)
T ss_pred HHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhc---cCCCcceeeeeeeeccCCEEEEEEeeeeecc--CCCCcchhh
Confidence 578999999999984 8999999999998876663 4688888888772 337765554 555554 333444444
Q ss_pred E--EEEEEEEcCCC
Q 026404 178 D--GTSEYKLDRNG 189 (239)
Q Consensus 178 d--G~S~y~ld~dG 189 (239)
. .+..|+=+.||
T Consensus 107 ~~Rat~v~rK~~dg 120 (137)
T COG4319 107 AGRATYVFRKEADG 120 (137)
T ss_pred eeeeEEEEEEcCCC
Confidence 4 44455555574
No 14
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=95.61 E-value=0.56 Score=35.27 Aligned_cols=97 Identities=19% Similarity=0.151 Sum_probs=61.0
Q ss_pred hhhhcCCCc--cceeecceEEeCCCC--ccccHHHHHHHHHHHHhcccccccceEEEEEEEE-eecCCEEEEEEEEEEEe
Q 026404 93 PALFYRELS--FDIYRDDIVFKDPIN--TFVGIENYKSIFWALRFHGRIFFRALWLDIISVW-QPLENVIMVRWTIHGVP 167 (239)
Q Consensus 93 p~lf~~~l~--~~IY~~DV~F~DP~~--~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~-~~~~~~i~vRWtm~g~p 167 (239)
..+-.++.+ .++|++|+.+.++.. .+.|.++++.++...- . .+..+.+++.++. ...++.+.+.+..+...
T Consensus 10 ~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--~--~~~~~~~~~~~~~v~~~~~~a~~~~~~~~~~ 85 (121)
T PF13474_consen 10 EAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDF--E--SFRPISIEFEDVQVSVSGDVAVVTGEFRLRF 85 (121)
T ss_dssp HHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHH--H--THSEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHh--h--hCceEEEEEEEEEEEECCCEEEEEEEEEEEE
Confidence 345556665 699999999998664 6789999999976532 2 2367777777765 34478888888777653
Q ss_pred CCCCCcceE--EEEEEEEEEcCCC-cEEEE
Q 026404 168 RVPWESRGR--FDGTSEYKLDRNG-KIYEH 194 (239)
Q Consensus 168 rL~w~~~i~--~dG~S~y~ld~dG-kI~~H 194 (239)
+ .-+.... +..+..|+-.+++ ||+.+
T Consensus 86 ~-~~~~~~~~~~r~t~v~~k~~~~Wki~h~ 114 (121)
T PF13474_consen 86 R-NDGEEIEMRGRATFVFRKEDGGWKIVHI 114 (121)
T ss_dssp E-CTTCEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred e-cCCccceeeEEEEEEEEEECCEEEEEEE
Confidence 3 2233333 4444445554333 44444
No 15
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=94.08 E-value=1.1 Score=32.54 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=53.7
Q ss_pred hhcCCCc--cceeecceEEeCCCCccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCCCCC
Q 026404 95 LFYRELS--FDIYRDDIVFKDPINTFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRVPWE 172 (239)
Q Consensus 95 lf~~~l~--~~IY~~DV~F~DP~~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL~w~ 172 (239)
+..++++ .++|+||+.|..|.....|++.+...+..- .+ .....+++...+... ++.+.+.=+.+..... .+
T Consensus 12 ~~~~D~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~-~~---~~~~~~~~~~~v~~~-gd~a~~~~~~~~~~~~-~g 85 (107)
T PF14534_consen 12 FNAGDIDALASLYADDFVFVGPGGTILGKEAILAAFKSG-FA---RFSSIKFEDVEVRVL-GDTAVVRGRWTFTWRG-DG 85 (107)
T ss_dssp HHTTHHHHHHTTEEEEEEEEETTSEEEEHHHHHHHHHHH-CE---EEEEEEEEEEEEEEE-TTEEEEEEEEEEEETT-TT
T ss_pred HHhCCHHHHHhhhCCCEEEECCCCCEeCHHHHHHHHhhc-cC---CCceEEEEEEEEEEE-CCEEEEEEEEEEEEec-CC
Confidence 3344454 699999999999999888999988887542 12 245556666665555 6665444444433332 23
Q ss_pred cceEEEEEEEEEEc
Q 026404 173 SRGRFDGTSEYKLD 186 (239)
Q Consensus 173 ~~i~~dG~S~y~ld 186 (239)
.++.++|...+.+-
T Consensus 86 ~~~~~~~~~~~v~~ 99 (107)
T PF14534_consen 86 EPVTIRGRFTSVWK 99 (107)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEEEE
Confidence 45556666555553
No 16
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=93.18 E-value=1.9 Score=31.41 Aligned_cols=103 Identities=21% Similarity=0.207 Sum_probs=60.8
Q ss_pred HHHHhchhhhc-CCCc--cceeecceEEeCCC-----CccccHHHHHHHHHHHHhcccccccceEEEEEEEE--eecC--
Q 026404 87 TLREEFPALFY-RELS--FDIYRDDIVFKDPI-----NTFVGIENYKSIFWALRFHGRIFFRALWLDIISVW--QPLE-- 154 (239)
Q Consensus 87 ~Lred~p~lf~-~~l~--~~IY~~DV~F~DP~-----~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~--~~~~-- 154 (239)
.|-..|-..+. ++.. .++|++|+.+..|. ....|+++++..+..+.... ....++ +..+. ...+
T Consensus 3 ~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~---~~~~h~-~~~~~~~~~~~~~ 78 (124)
T cd00531 3 QFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGP---SRTRHL-VSNVDVQPGDDGE 78 (124)
T ss_pred HHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCC---CceEEE-EEeEEEEeCCCCE
Confidence 45556666554 3443 68999999999888 57899999999976553210 112222 22322 2212
Q ss_pred -CEEEEEEEEEEEeCCCCCcceEEEEEEEEEEcC---CCcEEEEEe
Q 026404 155 -NVIMVRWTIHGVPRVPWESRGRFDGTSEYKLDR---NGKIYEHRV 196 (239)
Q Consensus 155 -~~i~vRWtm~g~prL~w~~~i~~dG~S~y~ld~---dGkI~~Hrv 196 (239)
..+...|.+..... +....+.|.-.+.+.. ++||.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~w~i~~~~~ 121 (124)
T cd00531 79 GVVVSVFGVLRTRGD---GEQDVFAGGQTFVLRPQGGGGKIANRRF 121 (124)
T ss_pred EEEEEEEEEEEEccC---CceeEEEEEEEEEEEEeCCEEEEEEEEE
Confidence 24555666665432 2345566666666653 667877764
No 17
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=92.45 E-value=1.8 Score=35.54 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=78.7
Q ss_pred HHHHHHHhchhhhcCCCc--cceeecceEEeCCCC-----c-cccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCC
Q 026404 84 AIRTLREEFPALFYRELS--FDIYRDDIVFKDPIN-----T-FVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLEN 155 (239)
Q Consensus 84 ~i~~Lred~p~lf~~~l~--~~IY~~DV~F~DP~~-----~-f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~ 155 (239)
..+..+.-|..+..+.++ .+++++|+++.=|.. . ..|.+.-+..|..+ .+ .+..+++++..+....+.
T Consensus 6 ~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~---~r-~~~~~~~~~~~~~~~gD~ 81 (133)
T COG3631 6 NTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALL---PR-LIEDGRFTVETVYVSGDP 81 (133)
T ss_pred hhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhC---hh-hcccccccceEEEEcCCc
Confidence 346667777777777776 699999999984442 2 44666666665433 22 467899999999988677
Q ss_pred EEEEEEEEEEEeCCCCCcceEEEEEEEEEEcCCCcEEEEEecceecCCC
Q 026404 156 VIMVRWTIHGVPRVPWESRGRFDGTSEYKLDRNGKIYEHRVDNIALNSP 204 (239)
Q Consensus 156 ~i~vRWtm~g~prL~w~~~i~~dG~S~y~ld~dGkI~~Hrvd~v~~d~~ 204 (239)
.+.+.|.-....+ -+++..-+=...+++. ||||.+=+. ++|..
T Consensus 82 ~~~v~~~~~~~~~--~G~~~~~~~~~v~~vr-dGrI~~~~~---y~D~~ 124 (133)
T COG3631 82 VGAVFRTRGRVSR--TGKPYENRYAFVIRVR-DGRITRYRE---YVDTL 124 (133)
T ss_pred eEEEEEecCcccc--cCceeecceEEEEEEe-CCEEEEEEE---EechH
Confidence 7767777664433 3456667778888885 899999776 77665
No 18
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=87.24 E-value=9.6 Score=32.33 Aligned_cols=103 Identities=18% Similarity=0.301 Sum_probs=67.8
Q ss_pred cceeecceEEeCCCC------ccccHHHHHH-HHHHHHhcccccccceEEEEEEEEe-ecCCEEEEEEEEEEEeCCCCCc
Q 026404 102 FDIYRDDIVFKDPIN------TFVGIENYKS-IFWALRFHGRIFFRALWLDIISVWQ-PLENVIMVRWTIHGVPRVPWES 173 (239)
Q Consensus 102 ~~IY~~DV~F~DP~~------~f~Gl~~Yk~-~f~~Lr~~~~~~f~~~~feV~~i~~-~~~~~i~vRWtm~g~prL~w~~ 173 (239)
.++|++|=.---..+ .++|.++++. ..|.+. .|.+-.+.-..+.. .+++.+.+.-.=+|+-+++.-|
T Consensus 39 h~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslk-----cFPDWeW~nv~ifeT~DP~~fwVEcdG~G~i~fpGyp 113 (162)
T PF03284_consen 39 HELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLK-----CFPDWEWYNVRIFETQDPNHFWVECDGRGKILFPGYP 113 (162)
T ss_dssp GGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHH-----HSTT-EEEEEEEEEBSSTTEEEEEEEEEEEE--TTS-
T ss_pred heeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHH-----HCCCcEEEEEEeecccCCCEEEEEecCccceecCCCC
Confidence 688888877665554 4899999999 666665 46666665555553 4578999999999998877667
Q ss_pred ceEEEE--EEEEEEcCCCcEEEEEecceecCCCCCCcccccHHHHHHHhCCC
Q 026404 174 RGRFDG--TSEYKLDRNGKIYEHRVDNIALNSPPPKFRVLAVEDLIQSIGCP 223 (239)
Q Consensus 174 ~i~~dG--~S~y~ld~dGkI~~Hrvd~v~~d~~~~k~~~l~v~~l~~~~~~p 223 (239)
+..++- +--|.|+ +|||...|. .+| +..++|++|.|
T Consensus 114 eg~y~NHfiHsFel~-nGkI~~~RE---FmN----------p~qq~RaLgi~ 151 (162)
T PF03284_consen 114 EGYYENHFIHSFELE-NGKIKRNRE---FMN----------PFQQLRALGIP 151 (162)
T ss_dssp -EEEEEEEEEEEEEE-TTEEEEEEE---EE-----------HHHHHHHTT--
T ss_pred cccceeeeEEEEEee-CCEEEeehh---hcC----------HHHHHHHcCCC
Confidence 666554 3445665 799999997 333 45677776644
No 19
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=81.45 E-value=21 Score=27.06 Aligned_cols=94 Identities=20% Similarity=0.153 Sum_probs=58.2
Q ss_pred HHHHhchhhhcCCCc--cceeecceEEeCCCCc--cccHHHHHHHHHHHHhcccccccceEEEEEEEE-ee-cCCEEEEE
Q 026404 87 TLREEFPALFYRELS--FDIYRDDIVFKDPINT--FVGIENYKSIFWALRFHGRIFFRALWLDIISVW-QP-LENVIMVR 160 (239)
Q Consensus 87 ~Lred~p~lf~~~l~--~~IY~~DV~F~DP~~~--f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~-~~-~~~~i~vR 160 (239)
.++.-|..|..++++ ..+|++|..+.++... +.|.++....|..+.. ..+++.|..+. ++ ....-.+-
T Consensus 5 Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~------~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 5 FVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPA------TGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTT------SSEEEEEEEEEEEEEEECCSEEE
T ss_pred HHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCC------cccEEEecccccccccccCCcEE
Confidence 344444444443555 6899999999988876 9999999999876643 22477777765 31 12333446
Q ss_pred EEEEEEeCCCCCc-ceEEEEEEEEEEc
Q 026404 161 WTIHGVPRVPWES-RGRFDGTSEYKLD 186 (239)
Q Consensus 161 Wtm~g~prL~w~~-~i~~dG~S~y~ld 186 (239)
++++|..+....+ ...|.-+-.+.-.
T Consensus 79 i~v~G~~~~~~~~~~~~F~q~FvL~~~ 105 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPRRFSQTFVLVPQ 105 (118)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEEEE
T ss_pred EEEEeEEEecCCCcccEEEEEEEEEEc
Confidence 6777765544333 3455555444444
No 20
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=78.46 E-value=26 Score=26.35 Aligned_cols=83 Identities=18% Similarity=0.154 Sum_probs=53.0
Q ss_pred HHHHHHHHhchhhhcC-CCc--cceeecceEEeCCC---CccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCE
Q 026404 83 YAIRTLREEFPALFYR-ELS--FDIYRDDIVFKDPI---NTFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENV 156 (239)
Q Consensus 83 ~~i~~Lred~p~lf~~-~l~--~~IY~~DV~F~DP~---~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~ 156 (239)
..|+.|-..|...... +.+ .++|++|..|.=+. ..+.|.+++...+....... ....++....+...++++
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~---~~~~H~~~~~~v~~dgd~ 83 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGF---AATRHMVTNPVVDVDGDT 83 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHE---EEEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccc---cceeEEccceEEEEcCCE
Confidence 4566777777765544 333 69999999997664 58999999999877653221 111111111111234789
Q ss_pred EEEEEEEEEEeC
Q 026404 157 IMVRWTIHGVPR 168 (239)
Q Consensus 157 i~vRWtm~g~pr 168 (239)
+.++|.+.....
T Consensus 84 A~~~~~~~~~~~ 95 (127)
T PF13577_consen 84 ATVRSYVLATHR 95 (127)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEEE
Confidence 999999998743
No 21
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=56.51 E-value=1.1e+02 Score=27.56 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=25.5
Q ss_pred CCCc--cceeecceEEe-CCC-------CccccHHHHHHHHHHH
Q 026404 98 RELS--FDIYRDDIVFK-DPI-------NTFVGIENYKSIFWAL 131 (239)
Q Consensus 98 ~~l~--~~IY~~DV~F~-DP~-------~~f~Gl~~Yk~~f~~L 131 (239)
++.+ .+++++||.|. |.- ..+.|.+.....|..+
T Consensus 187 gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~ 230 (293)
T PRK09636 187 GDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGL 230 (293)
T ss_pred CCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHH
Confidence 4444 69999999998 542 3578999988887544
No 22
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.60 E-value=1e+02 Score=25.36 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=56.2
Q ss_pred CCccceeecceEEeCC-CCccccHHHHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCCCCCcc-eE
Q 026404 99 ELSFDIYRDDIVFKDP-INTFVGIENYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRVPWESR-GR 176 (239)
Q Consensus 99 ~l~~~IY~~DV~F~DP-~~~f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL~w~~~-i~ 176 (239)
+-...+..+|-+..++ +.+++|.+.-...+.- .+. -....+|+|+.|... ++.+. .=++- ...-++. ..
T Consensus 26 ~avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~--~~~--~~~~~ef~I~riAad-g~~Vl-tER~D---~~~~g~~~~~ 96 (130)
T COG4308 26 AAVRRLGTPDTVYNNVGISTIHGPAETIALLRP--RMA--GILGFEFKILRIAAD-GGAVL-TERLD---ARIDGPLWVQ 96 (130)
T ss_pred HHHHHhcCCCeeeccCCcccccchhhhhhhhcc--ccC--CcceeEEEEEEEecc-cceeh-hhhhh---hhccCCcEEE
Confidence 3346677788888764 5689999998887431 232 245678999987754 33321 11111 1122332 24
Q ss_pred EEEEEEEEEcCCCcEEEEEecceecCCC
Q 026404 177 FDGTSEYKLDRNGKIYEHRVDNIALNSP 204 (239)
Q Consensus 177 ~dG~S~y~ld~dGkI~~Hrvd~v~~d~~ 204 (239)
|--+-.|++. +|||..-|+ |+|..
T Consensus 97 ~~V~GvfEV~-~~rI~~WRD---YFDv~ 120 (130)
T COG4308 97 FWVCGVFEVE-DGRIVLWRD---YFDVN 120 (130)
T ss_pred EEEEEEEEEe-CCEEEeehh---hhhHH
Confidence 5555567774 899999987 66554
No 23
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.24 E-value=1.6e+02 Score=24.18 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=36.1
Q ss_pred cccHHHHHHHHHHHHhcccccccceEEEEEEEEe-ecCCEEEEEEEEEEEeCCCCCcceEEEEEEEEEEcCCCcEEEEEe
Q 026404 118 FVGIENYKSIFWALRFHGRIFFRALWLDIISVWQ-PLENVIMVRWTIHGVPRVPWESRGRFDGTSEYKLDRNGKIYEHRV 196 (239)
Q Consensus 118 f~Gl~~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~-~~~~~i~vRWtm~g~prL~w~~~i~~dG~S~y~ld~dGkI~~Hrv 196 (239)
-.|.+.+.++|.-+ +- ..|+.++-=+.. .+++-+++.- +-+..-| +.-...=+-+++++ ||||.+|++
T Consensus 43 pdGk~~fv~fFt~f--fk----~~P~~~~kiVr~iadGdLV~vh~--hqt~~~p--g~~~~v~~DtfR~d-dgkivEHWD 111 (129)
T COG4922 43 PDGKDGFVRFFTEF--FK----EKPRISTKIVRVIADGDLVTVHY--HQTVSEP--GSYTTVTFDTFRID-DGKIVEHWD 111 (129)
T ss_pred CCchHHHHHHHHHH--HH----hCccccceeeEEeccCCEEEEEE--eeeeCCC--CcceeEEEEEEEee-CCceeeccc
Confidence 47999999998643 22 445544333332 3255554322 1111212 11222334567786 689999985
No 24
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=24.18 E-value=3.5e+02 Score=21.90 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcccccccceEEEEEEEEeecCCEEEEEEEEEEEeCCCCCcceEEEEEEEEEEcCCCcEE
Q 026404 123 NYKSIFWALRFHGRIFFRALWLDIISVWQPLENVIMVRWTIHGVPRVPWESRGRFDGTSEYKLDRNGKIY 192 (239)
Q Consensus 123 ~Yk~~f~~Lr~~~~~~f~~~~feV~~i~~~~~~~i~vRWtm~g~prL~w~~~i~~dG~S~y~ld~dGkI~ 192 (239)
+|...|..--+....++.+..+....-....++ -.|+..+... .=+..+|.|+|.+|++|+..
T Consensus 30 AYAsH~d~~~~~agafiRNa~i~ye~g~i~G~g----PyRvGLK~~~---GWvYaEGLTh~e~d~~~rLL 92 (114)
T PF08830_consen 30 AYASHFDESFFNAGAFIRNAKIRYEHGKIKGDG----PYRVGLKLEI---GWVYAEGLTHYEVDEEGRLL 92 (114)
T ss_dssp -----------EEEEEEEEEEE-EEEEEEESSS----SEEEEEEESS---SEEEEEEE-EEEE-TT--EE
T ss_pred hhhccccccccChhhEEEeeEEEEEEeEEEcCC----CeEEEEecCC---CEEEEccceeeEEcCCCcEE
Confidence 344444333333444666666655554333222 2233332221 23578999999999888754
Done!