BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026405
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
GN=ESC PE=2 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 156 HVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT 200
HV+ V+ G D+ + + + ++ R + +L +G++SN +LRQP T
Sbjct: 116 HVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVT 160
>sp|Q62829|PAK3_RAT Serine/threonine-protein kinase PAK 3 OS=Rattus norvegicus GN=Pak3
PE=1 SV=1
Length = 544
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K TP A A + Y N+ K K E+ ++ + ++ G Y +
Sbjct: 216 PNKEATPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 269
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 270 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 311
>sp|Q61036|PAK3_MOUSE Serine/threonine-protein kinase PAK 3 OS=Mus musculus GN=Pak3 PE=1
SV=2
Length = 559
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K P A A T Y N+ K K E+ ++ + ++ G Y +
Sbjct: 231 PNKEDIPPSAENANSTTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 284
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 285 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 326
>sp|Q7YQL3|PAK3_PONPY Serine/threonine-protein kinase PAK 3 OS=Pongo pygmaeus GN=PAK3
PE=2 SV=1
Length = 559
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K TP A A + Y N+ K K E+ ++ + ++ G Y +
Sbjct: 231 PNKEVTPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 284
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 285 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 326
>sp|Q7YQL4|PAK3_PANTR Serine/threonine-protein kinase PAK 3 OS=Pan troglodytes GN=PAK3
PE=2 SV=1
Length = 559
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K TP A A + Y N+ K K E+ ++ + ++ G Y +
Sbjct: 231 PNKEVTPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 284
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 285 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 326
>sp|O75914|PAK3_HUMAN Serine/threonine-protein kinase PAK 3 OS=Homo sapiens GN=PAK3 PE=1
SV=2
Length = 559
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 87 PRKYGTPEQALAAKKTAAYSNS-----KGKREQRELHQQQQQLLGSGGSGSSYSGAPGKS 141
P K TP A A + Y N+ K K E+ ++ + ++ G Y +
Sbjct: 231 PNKEVTPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKY------T 284
Query: 142 QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
+ IG G + +A G++V K M QQ K+E+ I
Sbjct: 285 RFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELII 326
>sp|Q48761|RADA_LISMO DNA repair protein RadA homolog OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=radA PE=3 SV=2
Length = 457
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 24/153 (15%)
Query: 73 MTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGS 132
M LEP+KK R G P +A + A+ + + + EL+ ++LG G
Sbjct: 35 MVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELN----RVLGGG---- 86
Query: 133 SYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISN 192
PG L G G+ G G + ++ V+A + K +L+ +S SI
Sbjct: 87 ---VVPGSMVLVG-GDPGIGKSTLLLQVSAQLTLTNKKVLY----------ISGEESIKQ 132
Query: 193 ASLR--QPATSGGNITYELRAGPQGVWETVDGV 223
LR + SG N+ + V ET+D V
Sbjct: 133 TKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,973,625
Number of Sequences: 539616
Number of extensions: 4366839
Number of successful extensions: 35485
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 31075
Number of HSP's gapped (non-prelim): 3797
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)