Query 026405
Match_columns 239
No_of_seqs 166 out of 349
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 12:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 99.7 2.8E-17 9.5E-22 133.9 9.4 71 152-223 1-72 (142)
2 2hx0_A Putative DNA-binding pr 99.7 5.3E-17 1.8E-21 134.0 10.5 75 148-223 13-88 (154)
3 2dt4_A Hypothetical protein PH 99.6 5.5E-16 1.9E-20 125.9 6.2 70 154-223 10-82 (143)
4 2h6l_A Hypothetical protein; N 99.6 1.2E-15 4E-20 124.3 6.6 70 154-223 10-82 (146)
5 3htn_A Putative DNA binding pr 99.6 1E-15 3.5E-20 125.7 5.7 70 154-223 16-88 (149)
6 3hwu_A Putative DNA-binding pr 99.3 5.1E-12 1.7E-16 103.4 7.1 68 154-222 13-83 (147)
7 4dyq_A Gene 1 protein; GP1, oc 69.7 1.2 3.9E-05 35.3 0.5 13 80-92 3-15 (140)
8 1t3g_A X-linked interleukin-1 68.2 3.9 0.00013 33.0 3.4 29 159-187 50-78 (159)
9 4i95_A Putative uncharacterize 65.7 7.8 0.00027 32.1 4.7 35 179-215 36-70 (142)
10 1fyx_A TOLL-like receptor 2; b 59.6 6 0.0002 31.3 2.9 29 159-187 43-71 (149)
11 2j67_A TOLL like receptor 10; 56.3 6.7 0.00023 32.3 2.8 29 159-187 73-101 (178)
12 4gzv_A Hypothetical protein; A 42.5 31 0.0011 28.4 4.7 35 179-215 36-70 (142)
13 3h16_A TIR protein; bacteria T 40.1 20 0.00067 28.1 3.0 32 159-190 56-87 (154)
14 3j0a_A TOLL-like receptor 5; m 36.5 23 0.00079 34.4 3.5 30 158-187 710-739 (844)
15 4gqw_A CBS domain-containing p 25.7 60 0.0021 23.4 3.4 41 150-190 88-128 (152)
16 4esy_A CBS domain containing m 25.0 42 0.0014 25.5 2.5 41 150-190 21-61 (170)
17 3ozi_A L6TR; plant TIR domain, 23.8 23 0.00079 30.4 0.9 29 159-187 72-100 (204)
18 3fio_A A cystathionine beta-sy 23.4 1.5E+02 0.005 18.7 5.1 30 157-186 2-31 (70)
19 2ezd_A High mobility group pro 22.5 39 0.0013 20.6 1.5 10 133-142 10-19 (26)
20 1pbj_A Hypothetical protein; s 20.5 91 0.0031 21.7 3.4 35 153-188 7-41 (125)
21 3i8n_A Uncharacterized protein 20.1 1.2E+02 0.0043 21.6 4.2 36 153-189 78-113 (130)
22 3kbe_A Superoxide dismutase [C 20.1 1.4E+02 0.005 24.1 5.0 31 179-210 3-33 (157)
23 3lfr_A Putative metal ION tran 20.0 1.1E+02 0.0036 22.3 3.8 39 150-189 73-111 (136)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.71 E-value=2.8e-17 Score=133.94 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=66.9
Q ss_pred CceeEEEEEcCCCchHHHHHHHHHhcC-ceeEEEeccCeeeeEEEeCCCCCCCceeEEeeeeeEEeeeccccc
Q 026405 152 GFTPHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGV 223 (239)
Q Consensus 152 ~ftpHVIrV~pGEDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtyeGrFEILSLsGTl~~~ 223 (239)
+|++|+|||.+||||+++|.+||++++ ++.||++++|+|++|+||+++.. ..++++|+|||+||+|||.++
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~ 72 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ 72 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC
Confidence 479999999999999999999999998 68999999999999999999986 578899999999999999885
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.70 E-value=5.3e-17 Score=134.03 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=69.9
Q ss_pred CCCCCceeEEEEEcCCCchHHHHHHHHHhcC-ceeEEEeccCeeeeEEEeCCCCCCCceeEEeeeeeEEeeeccccc
Q 026405 148 NLGQGFTPHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGV 223 (239)
Q Consensus 148 ~~g~~ftpHVIrV~pGEDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtyeGrFEILSLsGTl~~~ 223 (239)
+....+++|+|||.+||||+++|.+||++++ ++.|||+++|+|++|+||+++.. .+++|+|+||||||+|||..+
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~ 88 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELT 88 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETT
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCC-ccEecCCcEEEEEeeeeEeCC
Confidence 4567889999999999999999999999988 69999999999999999999986 478999999999999999885
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.61 E-value=5.5e-16 Score=125.87 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=63.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCC---CCceeEEeeeeeEEeeeccccc
Q 026405 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYELRAGPQGVWETVDGV 223 (239)
Q Consensus 154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ss---g~tvtyeGrFEILSLsGTl~~~ 223 (239)
++|+|||.+||||+++|.+||+++++..|+|+++|+|++|+||+++.. +..++++|+|||+||+|||...
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~ 82 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK 82 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC
Confidence 699999999999999999999999966666699999999999998765 3468999999999999999874
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.59 E-value=1.2e-15 Score=124.32 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=62.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCCC---CceeEEeeeeeEEeeeccccc
Q 026405 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG---GNITYELRAGPQGVWETVDGV 223 (239)
Q Consensus 154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg---~tvtyeGrFEILSLsGTl~~~ 223 (239)
++|+|||.+||||+++|.+||++++...|+|+++|+|++|+||+++... ..++++|+||||||+|||...
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~ 82 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMK 82 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECC
Confidence 5899999999999999999999999554445999999999999998763 478999999999999999874
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.58 E-value=1e-15 Score=125.70 Aligned_cols=70 Identities=10% Similarity=0.138 Sum_probs=63.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCC---CCceeEEeeeeeEEeeeccccc
Q 026405 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYELRAGPQGVWETVDGV 223 (239)
Q Consensus 154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ss---g~tvtyeGrFEILSLsGTl~~~ 223 (239)
+.++|||.+||||+++|.+||++++...|+++++|+|++|+||+++.. +..++++|+|||+||+|||...
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~ 88 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSM 88 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEcc
Confidence 789999999999999999999999977777799999999999998764 3478999999999999999874
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.28 E-value=5.1e-12 Score=103.37 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCC---CCceeEEeeeeeEEeeecccc
Q 026405 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYELRAGPQGVWETVDG 222 (239)
Q Consensus 154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ss---g~tvtyeGrFEILSLsGTl~~ 222 (239)
+-+++||.+||||+++|.+||++++...++++++|++++|+|+.++.. +...+++ ++||+||+|||+.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~ 83 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAW 83 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEc
Confidence 348999999999999999999999976667799999999999987754 3457788 8999999999985
No 7
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=69.72 E-value=1.2 Score=35.29 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=5.0
Q ss_pred ccccCCCCCCCCC
Q 026405 80 AKKKRGRPRKYGT 92 (239)
Q Consensus 80 ~KkKRGRPRKYg~ 92 (239)
.|+|+|||.||-+
T Consensus 3 ~~~k~GRPtk~t~ 15 (140)
T 4dyq_A 3 TEPKAGRPSDYMP 15 (140)
T ss_dssp -------CCSCCT
T ss_pred CCCCCCCCCCCCH
Confidence 4899999999963
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=68.19 E-value=3.9 Score=32.96 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=26.2
Q ss_pred EEcCCCchHHHHHHHHHhcCceeEEEecc
Q 026405 159 SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (239)
Q Consensus 159 rV~pGEDV~~kI~~Faqq~~rAicILSa~ 187 (239)
.+.+|++|.+.|.+..++..+.|+|||-.
T Consensus 50 D~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 50 DLIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp HCCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred cccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 36799999999999999999999999853
No 9
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=65.67 E-value=7.8 Score=32.11 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=30.3
Q ss_pred ceeEEEeccCeeeeEEEeCCCCCCCceeEEeeeeeEE
Q 026405 179 REICILSASGSISNASLRQPATSGGNITYELRAGPQG 215 (239)
Q Consensus 179 rAicILSa~GsVSnVTLRqp~ssg~tvtyeGrFEILS 215 (239)
..+=|||.-|.+.|++++ ++ ++.+++..|.|||.|
T Consensus 36 n~lKIlSdDgtF~Ni~m~-~~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 36 NTFKVLSDDGRIVNFTIR-PG-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEEECTTSEEEEEECC-TT-SCCEEEEEEEEEEEE
T ss_pred ccEEEEcCCCcEEEEEEe-cC-CCcEEEEeEEEEecC
Confidence 467799999999999999 44 458899999999986
No 10
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=59.58 E-value=6 Score=31.28 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=26.5
Q ss_pred EEcCCCchHHHHHHHHHhcCceeEEEecc
Q 026405 159 SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (239)
Q Consensus 159 rV~pGEDV~~kI~~Faqq~~rAicILSa~ 187 (239)
.+.+|++|.+.|.+..++..+.|+|||-.
T Consensus 43 d~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp HCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred cCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 47899999999999999999999999864
No 11
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=56.27 E-value=6.7 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=26.3
Q ss_pred EEcCCCchHHHHHHHHHhcCceeEEEecc
Q 026405 159 SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (239)
Q Consensus 159 rV~pGEDV~~kI~~Faqq~~rAicILSa~ 187 (239)
.+.+|++|.+.|.+..++..+.|+|||-.
T Consensus 73 D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 73 YFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp HCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred cCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 37899999999999999999999999864
No 12
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=42.50 E-value=31 Score=28.44 Aligned_cols=35 Identities=23% Similarity=0.079 Sum_probs=29.3
Q ss_pred ceeEEEeccCeeeeEEEeCCCCCCCceeEEeeeeeEE
Q 026405 179 REICILSASGSISNASLRQPATSGGNITYELRAGPQG 215 (239)
Q Consensus 179 rAicILSa~GsVSnVTLRqp~ssg~tvtyeGrFEILS 215 (239)
-..=|||.-|...|+++..-. +.+++..|.||+.|
T Consensus 36 ~~~KIlS~DgtF~N~~m~~~~--~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 36 NTFKVLSDDGRIVNFTIIPGA--DAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEEECTTSEEEEEECCTTS--CCEEEEEEEEEEEE
T ss_pred CceEEECCCCcEEEEEEeCCC--CcEEEEeEEEEecC
Confidence 457799999999999995533 46899999999986
No 13
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=40.05 E-value=20 Score=28.12 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=27.6
Q ss_pred EEcCCCchHHHHHHHHHhcCceeEEEeccCee
Q 026405 159 SVAAGEDVGQKIMLFMQQSKREICILSASGSI 190 (239)
Q Consensus 159 rV~pGEDV~~kI~~Faqq~~rAicILSa~GsV 190 (239)
.+.+|+++...|.+-.++....|+|||-.=.-
T Consensus 56 ~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~ 87 (154)
T 3h16_A 56 SLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFK 87 (154)
T ss_dssp EECTTCCHHHHHHHHHTSEEEEEEEEEHHHHT
T ss_pred hCCCccHHHHHHHHHHHhCcEEEEEeCcchhc
Confidence 58899999999999999888999999966443
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=36.48 E-value=23 Score=34.41 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=27.2
Q ss_pred EEEcCCCchHHHHHHHHHhcCceeEEEecc
Q 026405 158 ISVAAGEDVGQKIMLFMQQSKREICILSAS 187 (239)
Q Consensus 158 IrV~pGEDV~~kI~~Faqq~~rAicILSa~ 187 (239)
=.+.+|++|++.|.+-.++..+.|||||-.
T Consensus 710 rd~~~G~~~~~~i~~~i~~sr~~i~vls~~ 739 (844)
T 3j0a_A 710 RDFVPGENRIANIQDAIWNSRKIVCLVSRH 739 (844)
T ss_dssp SSCCSSSCHHHHHHHHHHHSSEEEEEECTT
T ss_pred cccCCCchHHHHHHHHHHHhCeEEEEeccc
Confidence 357899999999999999999999999875
No 15
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=25.74 E-value=60 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.378 Sum_probs=32.0
Q ss_pred CCCceeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCee
Q 026405 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSI 190 (239)
Q Consensus 150 g~~ftpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsV 190 (239)
..-|++.++.|.+.+++.+.+..|.+.+-..++|+...|-+
T Consensus 88 ~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~ 128 (152)
T 4gqw_A 88 GDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKL 128 (152)
T ss_dssp HHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBE
T ss_pred HHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcE
Confidence 33456667889999999998888888777889999866543
No 16
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=25.04 E-value=42 Score=25.55 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCceeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCee
Q 026405 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSI 190 (239)
Q Consensus 150 g~~ftpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsV 190 (239)
..-|+..++.|.+.+-|.+.+..+.+++-.++.|+...|-+
T Consensus 21 ~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~l 61 (170)
T 4esy_A 21 RDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHL 61 (170)
T ss_dssp GGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCE
T ss_pred HHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccE
Confidence 34567789999999999999988888777899999766543
No 17
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=23.83 E-value=23 Score=30.38 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=26.6
Q ss_pred EEcCCCchHHHHHHHHHhcCceeEEEecc
Q 026405 159 SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (239)
Q Consensus 159 rV~pGEDV~~kI~~Faqq~~rAicILSa~ 187 (239)
.+.+|++|...|.+-.++-..+|+|||-.
T Consensus 72 el~~G~~I~~~l~~aIe~Sri~IvV~S~n 100 (204)
T 3ozi_A 72 ELLKGKEIGPNLLRAIDQSKIYVPIISSG 100 (204)
T ss_dssp TTCCGGGTTTTHHHHHHHCSEEEEEECTT
T ss_pred ccCCCCchHHHHHHHHHhCcEeeEEEEcc
Confidence 47899999999999999999999999976
No 18
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=23.35 E-value=1.5e+02 Score=18.74 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=24.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCceeEEEec
Q 026405 157 VISVAAGEDVGQKIMLFMQQSKREICILSA 186 (239)
Q Consensus 157 VIrV~pGEDV~~kI~~Faqq~~rAicILSa 186 (239)
++.|.+.+.|.+.+..+.+++-..+.|+..
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~ 31 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG 31 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 578999999999988877777678888765
No 19
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=22.52 E-value=39 Score=20.57 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q 026405 133 SYSGAPGKSQ 142 (239)
Q Consensus 133 rp~GS~~K~k 142 (239)
||.|||||.-
T Consensus 10 RpkGSKNk~~ 19 (26)
T 2ezd_A 10 RPKGSKNKGA 19 (26)
T ss_dssp CCTTCCCCSC
T ss_pred CcCcccccCc
Confidence 8999998853
No 20
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=20.51 E-value=91 Score=21.69 Aligned_cols=35 Identities=9% Similarity=0.245 Sum_probs=28.1
Q ss_pred ceeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccC
Q 026405 153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASG 188 (239)
Q Consensus 153 ftpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~G 188 (239)
|++.++.|.+.+.+.+.+..+.+.+...+.|+. .|
T Consensus 7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~ 41 (125)
T 1pbj_A 7 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EG 41 (125)
T ss_dssp CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TT
T ss_pred cCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CC
Confidence 556788899999999988888877777888886 44
No 21
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=20.13 E-value=1.2e+02 Score=21.57 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=29.2
Q ss_pred ceeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCe
Q 026405 153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGS 189 (239)
Q Consensus 153 ftpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~Gs 189 (239)
|++ ++.|.+.+++.+.+..|.+.+-..+.|+...|-
T Consensus 78 m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~ 113 (130)
T 3i8n_A 78 MRP-IQVVLNNTALPKVFDQMMTHRLQLALVVDEYGT 113 (130)
T ss_dssp SEE-CCEEETTSCHHHHHHHHHHHTCCEEEEECTTSC
T ss_pred hcC-CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 455 789999999999998888887788888876553
No 22
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A
Probab=20.09 E-value=1.4e+02 Score=24.13 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=22.1
Q ss_pred ceeEEEeccCeeeeEEEeCCCCCCCceeEEee
Q 026405 179 REICILSASGSISNASLRQPATSGGNITYELR 210 (239)
Q Consensus 179 rAicILSa~GsVSnVTLRqp~ssg~tvtyeGr 210 (239)
+|+|||.+.+..-.|++.|.... ..+.+++.
T Consensus 3 ~Avavl~g~~V~G~v~f~q~~~g-~~v~v~~~ 33 (157)
T 3kbe_A 3 RAVAVLRGETVTGTIWITQKSEN-DQAVIEGE 33 (157)
T ss_dssp EEEEEEBCSSCEEEEEEECSSTT-SCCEEEEE
T ss_pred EEEEEEeCCCEEEEEEEEEeCCC-CeEEEEEE
Confidence 69999999887788889886532 33455443
No 23
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=20.03 E-value=1.1e+02 Score=22.31 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=30.7
Q ss_pred CCCceeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCe
Q 026405 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGS 189 (239)
Q Consensus 150 g~~ftpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~Gs 189 (239)
..-|++ ++.|.+.+++.+.+..|.+.+-..+.|+...|-
T Consensus 73 ~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~ 111 (136)
T 3lfr_A 73 KKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGG 111 (136)
T ss_dssp GGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSC
T ss_pred HHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCC
Confidence 334567 889999999999998888887788888875543
Done!