BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026406
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F2G|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g16990
pdb|2F2G|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g16990
pdb|2Q4X|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g16990
pdb|2Q4X|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g16990
Length = 221
Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 160/224 (71%), Gaps = 10/224 (4%)
Query: 14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKA 73
VIDTW+ KHR IY ATRH F+++IRDG+V+ SSF+ WLGQDY+FVR FV F ASVLI+A
Sbjct: 6 VIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVLIRA 65
Query: 74 WKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMS 133
K+S +S D EV+LGG+A L+DEI WFK+E SKW V+ S VPQ+ANQ Y RFLE L S
Sbjct: 66 CKDSGES-SDXEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLEDLXS 124
Query: 134 PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIA 193
EV Y V T FWAIEAVYQESFAHCLE TP EL C RWGNDGF QYC S+K IA
Sbjct: 125 SEVKYPVIXTAFWAIEAVYQESFAHCLEDGNKTPVELTGACHRWGNDGFKQYCSSVKNIA 184
Query: 194 NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237
R LE AS +VL +AE L+RVLE EV FW SRG
Sbjct: 185 ERCLENAS---------GEVLGEAEDVLVRVLELEVAFWEXSRG 219
>pdb|1RTW|A Chain A, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|B Chain B, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|C Chain C, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
pdb|1RTW|D Chain D, X-Ray Structure Of Pf1337, A Tena Homologue From
Pyrococcus Furiosus. Northeast Structural Genomics
Research Consortium (Nesg) Target Pfr34
Length = 220
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 18/206 (8%)
Query: 32 HPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGM 91
H F++ + T+ +F+KWL DY FV+ + F A + KA DD +
Sbjct: 20 HKFLIEXAENTIKKENFEKWLVNDYYFVKNALRFXALLXAKA---PDDL---LPFFAESI 73
Query: 92 AGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAV 151
+ E+ F+K+A + G+ L+ + +A + Y +L S+ S + T + E
Sbjct: 74 YYISKELEXFEKKAQELGISLNGEIDWRA-KSYVNYLLSVASL-GSFLEGFTALYCEEKA 131
Query: 152 YQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGD 211
Y E++ E P QE W + FG+Y ++KI N L EK + +
Sbjct: 132 YYEAWKWVRENLKERSP-YQEFINHWSSQEFGEYVKRIEKILNSLAEKHGE--FEKERAR 188
Query: 212 DVLKKAEVELIRVLEHEVEFWNMSRG 237
+V K+ V + E+ FW+++ G
Sbjct: 189 EVFKE-------VSKFELIFWDIAYG 207
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 32 HPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEV--ILG 89
HPF+ I GT+ F+ ++ QDY+F+ E+ A ++KA E+ E + IL
Sbjct: 27 HPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILN 86
Query: 90 GMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFL 128
+H+ + +E EL P AN+ Y ++
Sbjct: 87 NEMSIHNH---YIRELQITQKELQNACPTLANKSYTSYM 122
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 32 HPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEV--ILG 89
HPF+ I GT+ F+ ++ QDY+++ E+ A ++KA E+ E + IL
Sbjct: 25 HPFVQGIGRGTLERDKFRFYIIQDYLYLLEYAKVFALGVVKACDEAVMREFSNAIQDILN 84
Query: 90 GMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFL 128
+H+ + +E EL P AN+ Y ++
Sbjct: 85 NEMSIHNH---YIRELQITQKELQNACPTLANKSYTSYM 120
>pdb|2GM7|A Chain A, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|B Chain B, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|C Chain C, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|D Chain D, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM8|A Chain A, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|B Chain B, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|C Chain C, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|D Chain D, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
Length = 221
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 32 HPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGM 91
HPF+ + GT+ FK +L QDY ++ F A A S+ D + E+ G +
Sbjct: 29 HPFVAELYAGTLPMEKFKYYLLQDYNYLVNF-AKALSLAASRAPSVDLMKTALELAYGTV 87
Query: 92 AGLHDEIAWFKKEASKWGVEL---SETVPQKANQVYCRFLESLMSPEVDY---TVAITVF 145
G E+A ++ + G+ L +E P + N Y +L+S + E Y + F
Sbjct: 88 TG---EMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQCMAALLPCF 144
Query: 146 WA 147
W+
Sbjct: 145 WS 146
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 34/219 (15%)
Query: 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIF------VREFVAFAASVLIKAWKESDDSE 81
G+ HPF+ I DGT+ FK ++ QD + V+ F A A L + + ++
Sbjct: 44 GSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQ 103
Query: 82 GDTEVILGGMAGLHDEIAWFKK--EASKWGVELSETVPQKANQVYCRFLESLMSPEVDYT 139
G E + LH E A + E + + S T + +Y S++S
Sbjct: 104 GTYEAEM----ALHREFAELLEISEEERKAFKPSPTAYSYTSHMY----RSVLSGNFAEI 155
Query: 140 VA--ITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRW-GNDGFGQYCHSLKKIANRL 196
+A + +W V E HC D P + Q+W G G + +++ NR
Sbjct: 156 LAALLPCYWLYYEV-GEKLLHC---DPGHP-----IYQKWIGTYGGDWFRQQVEEQINRF 206
Query: 197 LEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMS 235
E A + ++V K + + +E +FW M+
Sbjct: 207 DELAENST------EEVRAKMKENFVISSYYEYQFWGMA 239
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 34/219 (15%)
Query: 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIF------VREFVAFAASVLIKAWKESDDSE 81
G+ HPF+ I DGT+ FK ++ QD + V+ F A A L + + ++
Sbjct: 44 GSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQ 103
Query: 82 GDTEVILGGMAGLHDEIAWFKK--EASKWGVELSETVPQKANQVYCRFLESLMSPEVDYT 139
G E + LH E A + E + + S T + +Y S++S
Sbjct: 104 GTYEAEM----ALHREFAELLEISEEERKAFKPSPTAYSFTSHMY----RSVLSGNFAEI 155
Query: 140 VA--ITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRW-GNDGFGQYCHSLKKIANRL 196
+A + +W V E HC D P + Q+W G G + +++ NR
Sbjct: 156 LAALLPCYWLYYEV-GEKLLHC---DPGHP-----IYQKWIGTYGGDWFRQQVEEQINRF 206
Query: 197 LEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMS 235
E A + ++V K + + +E +FW M+
Sbjct: 207 DELAENST------EEVRAKMKENFVISSYYEYQFWGMA 239
>pdb|3MVU|A Chain A, Crystal Structure Of A Tena Family Transcription Regulator
(Tm1040_3656) From Silicibacter Sp. Tm1040 At 1.80 A
Resolu
Length = 226
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 30 TRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDD--SEGDTEVI 87
T H F+ ++ GT+ +F +L QDY+F+ F A ++K+ S+ + G +
Sbjct: 25 THHAFVEGLKAGTLPREAFLHYLQQDYVFLIHFSRAWALAVVKSETHSEXLAAVGTVNAL 84
Query: 88 LGGMAGLHDEIAWFKKEASKWGVE-LSETVPQKANQVYCRFL 128
+ LH I EAS E L T + N Y RF+
Sbjct: 85 VAEEXQLHIGIC----EASGISQEALFATRERAENLAYTRFV 122
>pdb|1WWM|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Tt2028
From An Extremely Thermophilic Bacterium Thermus
Thermophilus Hb8
pdb|1WWM|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Tt2028
From An Extremely Thermophilic Bacterium Thermus
Thermophilus Hb8
Length = 190
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 31/188 (16%)
Query: 48 FKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASK 107
F+ WL QDY FV + +L++A + ++ + +E+ W +
Sbjct: 31 FRFWLQQDYPFVEALYRYQVGLLLEA------PQAHRAPLVQALXATVEELDWLLLQ--- 81
Query: 108 WGVELSETV-PQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNT 166
G S V P +A Y LE + Y + F+ + ++ E++AH + P+
Sbjct: 82 -GASPSAPVHPVRAG--YIALLEE--XGRLPYAYRVVFFYFLNGLFLEAWAHHV-PEEGP 135
Query: 167 PPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 226
E+ Q W F + L+ +A L E +++ L R+LE
Sbjct: 136 ---WAELSQHWFAPEFQAVLYDLEVLARGLWEDLDPEVV------------RTYLRRILE 180
Query: 227 HEVEFWNM 234
E W++
Sbjct: 181 AEKATWSL 188
>pdb|1TYH|A Chain A, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|B Chain B, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|D Chain D, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|E Chain E, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
Length = 248
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 40/222 (18%)
Query: 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIF------VREFVAFAASVLIKAWKESDDSE 81
G+ HPF+ I DGT+ FK ++ QD + V+ F A A L + + ++
Sbjct: 19 GSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRXASHAQ 78
Query: 82 GDTEVILGGMAGLHDEIAWFKK--EASKWGVELSETVPQKANQVYCRFLESLMSPEVDYT 139
G E LH E A + E + + S T + Y S++S
Sbjct: 79 GTYEA----EXALHREFAELLEISEEERKAFKPSPTAYSYTSHXY----RSVLSGNFAEI 130
Query: 140 VA--ITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRW----GNDGFGQYCHSLKKIA 193
+A + +W V E HC D P + Q+W G D F Q +++
Sbjct: 131 LAALLPCYWLYYEV-GEKLLHC---DPGHP-----IYQKWIGTYGGDWFRQ---QVEEQI 178
Query: 194 NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMS 235
NR E A + ++V K + + +E +FW +
Sbjct: 179 NRFDELAENST------EEVRAKXKENFVISSYYEYQFWGXA 214
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIF------VREFVAFAASVLIKAWKESDDSE 81
G+ HPF+ I DGT+ FK ++ QD + V+ F A A L + + ++
Sbjct: 41 GSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRXASHAQ 100
Query: 82 GDTEVILGGMAGLHDEIA 99
G E LH E A
Sbjct: 101 GTYEA----EXALHREFA 114
>pdb|1TO9|B Chain B, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIF------VREFVAFAASVLIKAWKESDDSE 81
G+ HPF+ I DGT+ FK ++ QD + V+ F A A L + + ++
Sbjct: 41 GSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRXASHAQ 100
Query: 82 GDTEVILGGMAGLHDEIA 99
G E LH E A
Sbjct: 101 GTYEA----EXALHREFA 114
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human
Leucine- Rich Repeat-Containing Protein 4
Length = 103
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 18 WLRKHRLIYIGATRHPFILAIRDGTVNYS 46
WL + + A+RHP I + DGT+N+S
Sbjct: 39 WLLPNGTVLSHASRHPRISVLNDGTLNFS 67
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 18 WLRKHRLIYIGATRHPFILAIRDGTVNYS 46
WL + + A+RHP I + DGT+N+S
Sbjct: 384 WLLPNGTVLSHASRHPRISVLNDGTLNFS 412
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 182 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIR 223
GQ H I N +LE+ + D ++GK VL++ V+L+R
Sbjct: 17 LGQLLHK-AGIDNVILERQTPDYVLGKIRAGVLEQGMVDLLR 57
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 142 ITVFWAIEAVYQESFAHCLEPDTNTPPE-LQEVCQRWGNDGFGQYCHSLKKI 192
I + ++ + E+F HC E DT T PE + V DG YC+SL +
Sbjct: 119 IPILDSVTEIDSEAFHHCEELDTVTIPEGVTSVA-----DGXFSYCYSLHTV 165
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 53 GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAW 100
GQ +++ F + LIK WKE +D + E L + ++AW
Sbjct: 173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 220
>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From
Arabidopsis Thaliana
Length = 235
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 87 ILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDY 138
++ G G HD +A E G+++SE+ KAN+ Y SP+ +Y
Sbjct: 71 LVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGS------SPKAEY 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,188,493
Number of Sequences: 62578
Number of extensions: 293977
Number of successful extensions: 768
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 20
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)