Query 026406
Match_columns 239
No_of_seqs 118 out of 927
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 2E-56 4.3E-61 373.4 25.1 212 12-238 1-217 (218)
2 PRK14713 multifunctional hydro 100.0 1E-50 2.2E-55 381.8 26.4 212 10-239 316-529 (530)
3 PRK09517 multifunctional thiam 100.0 4.2E-49 9.2E-54 383.2 26.4 215 5-238 537-752 (755)
4 PF03070 TENA_THI-4: TENA/THI- 100.0 1.2E-49 2.6E-54 332.7 17.9 204 19-237 1-209 (210)
5 PTZ00347 phosphomethylpyrimidi 100.0 1.1E-46 2.4E-51 352.7 24.7 207 10-238 9-219 (504)
6 KOG2598 Phosphomethylpyrimidin 100.0 2.2E-29 4.7E-34 223.2 18.3 207 12-237 309-521 (523)
7 COG5424 Pyrroloquinoline quino 99.4 3.1E-11 6.8E-16 100.6 17.5 209 9-237 6-227 (242)
8 PRK05157 pyrroloquinoline quin 99.2 1.5E-09 3.2E-14 92.3 18.9 195 12-237 12-229 (246)
9 TIGR02111 PQQ_syn_pqqC coenzym 99.2 5.1E-09 1.1E-13 88.4 18.3 192 14-236 6-221 (239)
10 CHL00168 pbsA heme oxygenase; 97.6 0.011 2.4E-07 50.6 17.2 109 13-132 4-113 (238)
11 cd00232 HemeO Heme oxygenase c 97.6 0.015 3.3E-07 48.0 17.8 168 13-196 1-174 (203)
12 PF12981 DUF3865: Domain of Un 96.6 0.054 1.2E-06 45.2 11.8 188 28-235 20-226 (231)
13 PF01126 Heme_oxygenase: Heme 96.3 0.31 6.6E-06 40.3 14.7 122 12-147 1-124 (205)
14 COG5398 Heme oxygenase [Inorga 96.2 0.06 1.3E-06 44.8 9.6 111 14-136 3-115 (238)
15 PF14518 Haem_oxygenas_2: Iron 92.1 0.45 9.7E-06 34.9 5.5 62 95-156 16-81 (106)
16 PF15565 Imm16: Immunity prote 36.4 61 0.0013 24.1 3.8 38 185-231 14-51 (106)
17 PF02840 Prp18: Prp18 domain; 31.8 66 0.0014 25.3 3.5 43 32-74 44-91 (144)
18 PF01320 Colicin_Pyocin: Colic 31.4 72 0.0016 22.8 3.4 40 174-227 7-46 (85)
19 PF05974 DUF892: Domain of unk 30.7 2.7E+02 0.0058 21.9 9.0 76 46-128 4-80 (159)
20 KOG2808 U5 snRNP-associated RN 24.0 3.1E+02 0.0066 24.7 6.6 43 33-75 229-276 (341)
21 KOG0581 Mitogen-activated prot 20.5 69 0.0015 29.2 2.0 38 13-50 313-353 (364)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=2e-56 Score=373.43 Aligned_cols=212 Identities=22% Similarity=0.312 Sum_probs=196.4
Q ss_pred CchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHH
Q 026406 12 GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGM 91 (239)
Q Consensus 12 ~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~ 91 (239)
|.|++.|++.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+|+ .+.+..+...+
T Consensus 1 ~~f~~~L~~~~~~~W~~~~~H~FV~~L~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka~~-----~~~~~~~~~~~ 75 (218)
T COG0819 1 MMFSEELIRAAQPIWQKYIEHPFVQELADGTLPREKFQFYLVQDYLYLVNFARALALLASKAPD-----LELMEELAKII 75 (218)
T ss_pred CchHHHHHHHhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999 67788888887
Q ss_pred hhH-HHHHHHHHHHHHHcCCCC---CCCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-CC
Q 026406 92 AGL-HDEIAWFKKEASKWGVEL---SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NT 166 (239)
Q Consensus 92 ~~i-~~E~~~h~~~~~~~gi~~---~~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~~ 166 (239)
+.+ .+|+.+|+++++++||+. .+.+++|+|.+||+||+++ +..+++.++++|+.||+|+|.+||+++...+. ..
T Consensus 76 ~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ym~~~-~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~ 154 (218)
T COG0819 76 QFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTRYLLDT-AYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASP 154 (218)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 654 679999999999999997 3678999999999999999 47788999999999999999999999876542 24
Q ss_pred CchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHhchhhhcC
Q 026406 167 PPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 167 ~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~ 238 (239)
+++|++||++|+|++|.+.|++++++||+++...++ +++++|+.+|.++|++|..||||||+.
T Consensus 155 ~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~---------~~~~~l~~iF~~ss~~E~~Fwd~a~~~ 217 (218)
T COG0819 155 NPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSE---------EELEKLKQIFLTASRFELAFWDMAYRL 217 (218)
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999999999999998888 899999999999999999999999974
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=1e-50 Score=381.76 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=195.2
Q ss_pred CCCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHH
Q 026406 10 GKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILG 89 (239)
Q Consensus 10 ~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~ 89 (239)
..++|+++|++.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+++ .+++..+..
T Consensus 316 ~~~~fs~~L~~~~~~~w~~~~~HpFv~~L~~GtL~~~~F~~Yl~QD~~yL~~~~r~~a~~~aka~~-----~e~~~~~~~ 390 (530)
T PRK14713 316 PAGPFTAALWQASGPIREAIEDLPFVRALADGTLPEEAFEFYLAQDALYLNGYSRALARLAALAPD-----PAEQVFWAQ 390 (530)
T ss_pred CCccHHHHHHHhhHHHHHHHHcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHH
Confidence 345799999999999999999999999999999999999999999999999999999999999999 778888888
Q ss_pred HHhh-HHHHHHHHHHHHHHcCCCCCCCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCC-CCCCC
Q 026406 90 GMAG-LHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEP-DTNTP 167 (239)
Q Consensus 90 ~~~~-i~~E~~~h~~~~~~~gi~~~~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~-~~~~~ 167 (239)
.+.. +..|+++|+++++.+|++ .+++|+|++|++||+++ +.++++.++++|++||+|+|.+||+++... ..+++
T Consensus 391 ~~~~~~~~E~~~h~~~~~~~~~~---~~~~p~~~aY~~~l~~~-a~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~~~~~~ 466 (530)
T PRK14713 391 SAQACLEVESELHRSWLGDRDAD---TAPSPVTLAYTDFLLAR-AAGGSYAVGAAAVLPCFWLYAEVGAELHARAGNPDD 466 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc---CCCChHHHHHHHHHHHH-HhcCCHHHHHHHHHhHHHHHHHHHHHHHhhccCCCC
Confidence 8754 578999999999999983 68999999999999999 467899999999999999999999997542 12345
Q ss_pred chHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHhchhhhcCC
Q 026406 168 PELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA 239 (239)
Q Consensus 168 ~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~~ 239 (239)
++|++||++|++++|.++|+++++++|++++.+++ +++++|+++|+++|+||++||||||++|
T Consensus 467 ~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~---------~~~~~~~~~F~~a~~~E~~Fwd~A~~~~ 529 (530)
T PRK14713 467 HPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASP---------AERAAMARAFLTACRYELEFFDQARRRA 529 (530)
T ss_pred ChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 78999999999999999999999999999999998 8999999999999999999999999875
No 3
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=4.2e-49 Score=383.23 Aligned_cols=215 Identities=17% Similarity=0.157 Sum_probs=197.3
Q ss_pred chhhcCCCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHH
Q 026406 5 AKEDAGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDT 84 (239)
Q Consensus 5 ~~~~~~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~ 84 (239)
+-.+....+|+++||+.+.|+|+++++||||++|++||||.++|++||+|||+||.+|+|+++++++|+|+ .+++
T Consensus 537 ~~~~~~~~~f~~~L~~~~~~~w~~~~~HPFv~~L~~GtL~~e~F~~YL~QD~~YL~~yar~~a~~~aka~~-----~~~~ 611 (755)
T PRK09517 537 APRIEPAGPFTRALWEASGDIIAEINDSDFIRMLGDGTLRRPEFDFYIDQDAQYLRQYSRALARLSSIAPD-----SHAQ 611 (755)
T ss_pred ccccCCCCChHHHHHHHhHHHHHHHhcChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHH
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999 7778
Q ss_pred HHHHHHHh-hHHHHHHHHHHHHHHcCCCCCCCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026406 85 EVILGGMA-GLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPD 163 (239)
Q Consensus 85 ~~l~~~~~-~i~~E~~~h~~~~~~~gi~~~~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~ 163 (239)
..+...+. .+.+|+++|+++++.+|+. .+++|+|.+|++||+++ +..++++++++|++||+|+|.+||+++....
T Consensus 612 ~~~~~~~~~~~~~E~~~h~~~~~~~~~~---~~~~p~~~aYt~~l~~~-a~~g~~~~~laAllPC~w~Y~~ig~~l~~~~ 687 (755)
T PRK09517 612 VEWAQSAAECIVVEAELHRSYLSGKEAP---SAPSPVTMAYTDFLIAR-TYTEDYVVGVAAVLPCYWLYAEIGLMLAEQN 687 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcC---CCCChHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888775 4688999999999999973 68899999999999999 4678999999999999999999999986532
Q ss_pred CCCCchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHhchhhhcC
Q 026406 164 TNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 164 ~~~~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~ 238 (239)
. .+++|++||++|++++|.++|+++++++|++++.+++ +++++|+++|+++|+||++||||||+.
T Consensus 688 ~-~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~---------~~~~~l~~~F~~a~~lE~~Fwd~A~~~ 752 (755)
T PRK09517 688 H-DEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGP---------EQRVDAARAFLSASVHEREFFDQATRH 752 (755)
T ss_pred C-CCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 3457999999999999999999999999999999998 999999999999999999999999974
No 4
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=100.00 E-value=1.2e-49 Score=332.74 Aligned_cols=204 Identities=23% Similarity=0.351 Sum_probs=185.0
Q ss_pred HHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHH-hhHHHH
Q 026406 19 LRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGM-AGLHDE 97 (239)
Q Consensus 19 ~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~~i~~E 97 (239)
++++.|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++.+++|+|+ .+.+..+...+ ..+.+|
T Consensus 1 ~~~~~~~w~~~~~HPFv~~l~~GtL~~~~f~~Yl~QD~~yl~~~~r~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~e 75 (210)
T PF03070_consen 1 HQKAEPIWEAILNHPFVQELADGTLPKEAFRYYLIQDYHYLKHFARALALLASKAPD-----PEEQRELLSRLIQEIEEE 75 (210)
T ss_dssp SHHTHHHHHHHHTSHHHHHHHTTESEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----HHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHCCHHHHHHhCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999 66664555554 567889
Q ss_pred HHHHHHHHHHcCCCCC---CCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHH
Q 026406 98 IAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEV 173 (239)
Q Consensus 98 ~~~h~~~~~~~gi~~~---~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~~~~~y~~W 173 (239)
+++|.++++.+||+.+ +.+++|+|++|++||.++ +..++++++++|++||+|+|.+||+++..... +++++|.+|
T Consensus 76 ~~~~~~~~~~~gi~~~~~~~~~~~p~~~~y~~~l~~~-a~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~~~~~~~y~~w 154 (210)
T PF03070_consen 76 LELHEDFAEELGISREDLENIEPSPATRAYTDFLLSL-AQTGSLAEGLAALLPCEWIYAEIGKRLAEKLRAPEDNPYQEW 154 (210)
T ss_dssp HHHHHHHHHHTTSHHHHHHHSTC-HHHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSSHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHhhhhhhHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHH
Confidence 9999999999999985 488999999999999999 46789999999999999999999998765432 466789999
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHhchhhhc
Q 026406 174 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237 (239)
Q Consensus 174 i~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~ 237 (239)
|+.|++++|...|+++.+++|+++..+++ +++++++++|+++|++|++|||+||+
T Consensus 155 i~~y~~~~f~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~f~~~~~~E~~Fwd~a~~ 209 (210)
T PF03070_consen 155 IDMYASEEFEAFVEWLEELLDELAAEASD---------EERERLEEIFRRSCELEYDFWDAAYN 209 (210)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHTHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988887 88999999999999999999999985
No 5
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.1e-46 Score=352.73 Aligned_cols=207 Identities=13% Similarity=0.220 Sum_probs=183.6
Q ss_pred CCCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHH
Q 026406 10 GKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILG 89 (239)
Q Consensus 10 ~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~ 89 (239)
+..+|+++||+.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+++ .+++..+..
T Consensus 9 ~~~~fs~~L~~~~~~~~~~~~~HpFv~~l~~GtL~~~~F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~-----~~~~~~~~~ 83 (504)
T PTZ00347 9 VFGGLSEALWKENQDLAMMSLHLPFVQGLGDGTLDQNAFRTYIAQDTLYLNGYIRILSYCITKSDV-----TATGGGLLE 83 (504)
T ss_pred CCCCHHHHHHHhHHHHHHHHhCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999 677888888
Q ss_pred HHhh-HHHHHHHHHHHHHHcCCCCCCCCcchHhHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHHHhhccCCC-CC
Q 026406 90 GMAG-LHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDY--TVAITVFWAIEAVYQESFAHCLEPD-TN 165 (239)
Q Consensus 90 ~~~~-i~~E~~~h~~~~~~~gi~~~~~~~~pa~~aY~~~l~~~~~~~~~~--~~~l~a~~~c~~~Y~~i~~~~~~~~-~~ 165 (239)
.+.. +++|..+|+++++. .+..+++|+|++|++||++++ ..+++ +++++|++||+|+|.+||+++.... .+
T Consensus 84 ~~~~~~~~e~~~h~~~~~~----~~~~~~~p~~~aY~~~l~~~a-~~g~~~~~~~l~Al~pC~~~Y~~ig~~l~~~~~~~ 158 (504)
T PTZ00347 84 LLKGVLEELKNCHHHYIDN----PDAAGPEAACRKYVDFLLASG-NADTLGPSVVIAAVIPCARLYAWVGQELTNEVELT 158 (504)
T ss_pred HHHHHHHHHHHHHHHHHhh----hhccCCCHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 7754 56788899998742 235678999999999999994 66788 9999999999999999999976532 22
Q ss_pred CCchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHhchhhhcC
Q 026406 166 TPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238 (239)
Q Consensus 166 ~~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~ 238 (239)
.+++|++||++|++++|.++|.++.+++|+++. + +++++++++|+++|++|++||||||++
T Consensus 159 ~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~---~---------~~~~~~~~~F~~~~~~E~~Fw~~Ay~~ 219 (504)
T PTZ00347 159 ESHPFRRWLLSYSDEPINTSVEQLESLLDKYIR---P---------GEFSEVAQAYRRAMELEYDFFDSFGYC 219 (504)
T ss_pred CCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---h---------hhHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 346899999999999999999999999999863 3 567789999999999999999999974
No 6
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.97 E-value=2.2e-29 Score=223.20 Aligned_cols=207 Identities=15% Similarity=0.238 Sum_probs=179.4
Q ss_pred CchHHHHHHH--cHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHH
Q 026406 12 GGVIDTWLRK--HRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILG 89 (239)
Q Consensus 12 ~~~~~~L~~~--~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~ 89 (239)
+.|+..|... ..|.|.++++|+|+.+++.|||+...|.+|+.|||+||.+|+|+++....|.++ .++++.-..
T Consensus 309 g~f~~yl~~hpkv~p~W~s~inh~fv~~~~~Gtl~~~~fq~~l~qdy~ylIn~ara~~v~g~ks~~-----i~~ie~~~~ 383 (523)
T KOG2598|consen 309 GSFFNYLINHPKVKPKWDSYINHEFVKQLADGTLERKKFQDYLEQDYLYLINYARAHGVAGSKSPT-----IEDIEKEAV 383 (523)
T ss_pred HHHHHHHhhCcccChhHHHHhhHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHhhhcccCCc-----HHHHHHHhH
Confidence 4577777754 449999999999999999999999999999999999999999999999999999 455555544
Q ss_pred HHhhHHHHHHHHHHHHHHcCCCCC---CCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-C
Q 026406 90 GMAGLHDEIAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-N 165 (239)
Q Consensus 90 ~~~~i~~E~~~h~~~~~~~gi~~~---~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~ 165 (239)
.++.+.+|+..|.++++.+|++.. +-+++|++++|.+|+.++ +..++|.+...|+.| |..+...+..... .
T Consensus 384 iv~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry~~d~-~~~g~~~~l~~a~~p----y~~~l~~lk~~~~as 458 (523)
T KOG2598|consen 384 IVQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRYINDT-GRRGNWQELVIALNP----YVFALDKLKDEITAS 458 (523)
T ss_pred HHHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHHhhhh-hcccChhhhhhhhch----hhHHHHHHHhhcccC
Confidence 456788999999999999999973 233489999999999999 578899999999999 6666666554322 2
Q ss_pred CCchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHhchhhhc
Q 026406 166 TPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237 (239)
Q Consensus 166 ~~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~ 237 (239)
..++|.+|++.|++.++...++.+.+.++...+..++ ++.+.+..+|.++|.+|..||+.++.
T Consensus 459 ~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~p---------e~~~~l~~i~~~~~~~Et~fw~t~~~ 521 (523)
T KOG2598|consen 459 EGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSP---------EKLQTLVTIFARVTEFETLFWTTALE 521 (523)
T ss_pred CCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3358999999999999999999999999999999999 99999999999999999999999874
No 7
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=99.40 E-value=3.1e-11 Score=100.63 Aligned_cols=209 Identities=12% Similarity=0.147 Sum_probs=149.8
Q ss_pred cCCCchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHH
Q 026406 9 AGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVIL 88 (239)
Q Consensus 9 ~~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~ 88 (239)
.+.++|..+|....+.-.. ..|||.+.+.+|.|++++++-|++.-|+|+++|.+.++.+++||++ .+..+..+
T Consensus 6 ~~~~~~~~~l~~i~~~~~~--~~HpF~~~m~~g~lt~~ql~~yvi~~~~~~k~~p~~lSail~rcdd-----~~~r~~~l 78 (242)
T COG5424 6 EDRLSFWARLRFIGQFYYD--LPHPFYVAMQEGELTKEQLQGYVINRYYYQKNFPLYLSAILARCDD-----DDVRREWL 78 (242)
T ss_pred hhhHHHHHHHHHHHHHhcc--CCCHHHHHHHccCCCHHHHHHHHHhhhHHHHhhhHHHHHHHhcCCc-----HhHHHHHH
Confidence 3455677777776665333 8899999999999999999999999999999999999999999998 44445444
Q ss_pred HHH----hhHH--HHHHHHHHHHHHcCCCCC---CCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhc
Q 026406 89 GGM----AGLH--DEIAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHC 159 (239)
Q Consensus 89 ~~~----~~i~--~E~~~h~~~~~~~gi~~~---~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~~~~ 159 (239)
.-+ +... +.+++..++...+|++.+ +..|.|.++.=+..-... ++..++.++++++...|..=..|...-
T Consensus 79 eni~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~eplp~~~~av~~~~~~-a~~~s~~~~~aslyt~El~apri~~~k 157 (242)
T COG5424 79 ENIMDEDNGYNEPNHIDLWLRLAEALGVSREEILSHEPLPSTRFAVDTWVRF-ATEKSWLEGAASLYTYELVAPRISVEK 157 (242)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcCCCHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHhhccHHHHHH
Confidence 433 1223 578999999999999984 466999999999999998 578899999999999776665655432
Q ss_pred cCCC---CCCCc-hHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHhchhh
Q 026406 160 LEPD---TNTPP-ELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMS 235 (239)
Q Consensus 160 ~~~~---~~~~~-~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a 235 (239)
.... ++..+ .=..|+..+..-+ ...+....+++.+.+.. . +.+.++.++-.+++..=+.|-|..
T Consensus 158 i~gl~~~~~~~~~a~~~yf~~h~eaD-~~Ha~Ealkiv~~~~~t--~---------E~~~~~~~~~~~~~D~lw~fLda~ 225 (242)
T COG5424 158 ISGLPYFNGFSDAAAYAYFREHLEAD-VRHAEEALKIVLELAGT--R---------ELQDQVLDALQKSLDVLWLFLDAR 225 (242)
T ss_pred ccCchhhcCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhc--h---------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 01000 0023333332111 33445556666666532 2 556678889999999989998876
Q ss_pred hc
Q 026406 236 RG 237 (239)
Q Consensus 236 ~~ 237 (239)
+.
T Consensus 226 ~~ 227 (242)
T COG5424 226 MQ 227 (242)
T ss_pred Hh
Confidence 54
No 8
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=99.24 E-value=1.5e-09 Score=92.33 Aligned_cols=195 Identities=8% Similarity=0.020 Sum_probs=135.7
Q ss_pred CchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHH
Q 026406 12 GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGM 91 (239)
Q Consensus 12 ~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~ 91 (239)
..|.+.|.... . ..-.+|||-+.+.+|+|++++++.|..|=|+|-..+.+..+-++++||| .+..+.+++-|
T Consensus 12 ~eF~~~L~~~~-~--~yh~~HPF~~~~~~Gklt~~qlq~wa~nrYyyq~~~P~kdaaI~S~c~D-----~e~Rr~w~~ri 83 (246)
T PRK05157 12 EEFEAALRAIG-A--RYHIHHPFHRLLHEGKLTREQIQAWVANRFYYQINIPLKDAAILSNCPD-----RETRREWRQRI 83 (246)
T ss_pred HHHHHHHHHHH-H--hhcccChHHHHHHcCCCCHHHHHHHHHHhchhhccchHHHHHHHHcCCC-----HHHHHHHHHHH
Confidence 34777777766 3 2233899999999999999999999999999999999999999999999 55555555433
Q ss_pred -hh-----HHHHHHHHHHHHHHcCCCCC---CC-CcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccC
Q 026406 92 -AG-----LHDEIAWFKKEASKWGVELS---ET-VPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLE 161 (239)
Q Consensus 92 -~~-----i~~E~~~h~~~~~~~gi~~~---~~-~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~ 161 (239)
.. -.+.++.+.++.+.+|++.+ +. ...|.|+..++.....+ ...++.+++++++. |.-=-.|-+.
T Consensus 84 ~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~lP~tr~aVday~~~~-r~~~~~eavas~lt-E~~~P~I~~~--- 158 (246)
T PRK05157 84 LDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGVLPGVRFAVDAYVNFA-RRAPWLEAVASSLT-ELFAPQIHQE--- 158 (246)
T ss_pred HHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccCChHHHHHHHHHHHHH-ccCCHHHHHHHHHH-HHhhhHHHHH---
Confidence 11 02358899999999999974 34 37899999999888884 66799999998766 3322222221
Q ss_pred CCCCCCchHHHHhhhcC--ChH----HHHHH-------HHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHH
Q 026406 162 PDTNTPPELQEVCQRWG--NDG----FGQYC-------HSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHE 228 (239)
Q Consensus 162 ~~~~~~~~y~~Wi~~y~--s~~----f~~~v-------~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E 228 (239)
....|-+.|. +++ |.... +...+++-+.+ .++ ++++++.++-...|..=
T Consensus 159 -------ri~gl~~~Y~~~~~e~l~yF~~h~~~a~~Dvehal~~~l~~~--~t~---------e~q~~al~al~~k~d~L 220 (246)
T PRK05157 159 -------RLAGWPEHYPWIDPEGLAYFRSRLTQAPRDVEHGLAYVLDHA--TTR---------EQQERALEALQFKLDVL 220 (246)
T ss_pred -------HHHHHHHHCCCCCHHHHHHHHHHhhccchhHHHHHHHHHHHc--CCH---------HHHHHHHHHHHHHHHHH
Confidence 1234444442 222 21111 11112222222 244 67888999999999999
Q ss_pred HHhchhhhc
Q 026406 229 VEFWNMSRG 237 (239)
Q Consensus 229 ~~Fwd~a~~ 237 (239)
+.|+|+.|.
T Consensus 221 w~~LDai~~ 229 (246)
T PRK05157 221 WSMLDALYM 229 (246)
T ss_pred HHHHHHHHH
Confidence 999998763
No 9
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=99.16 E-value=5.1e-09 Score=88.41 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=130.2
Q ss_pred hHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHH-h
Q 026406 14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGM-A 92 (239)
Q Consensus 14 ~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~ 92 (239)
|-..|...... .--.+|||-+.+.+|+|++++++.|..|-|+|...+.+..+-++++||| .+..+.++.-| +
T Consensus 6 f~~~Lr~~~~~--~yh~~HPF~~~~~~GkLt~~ql~~wa~nrYyyq~~iP~kdAAi~s~c~D-----~e~Rr~wl~ri~D 78 (239)
T TIGR02111 6 FEAALRDIGAR--RYHDLHPFHALLHDGKLTRDQVQAWVLNRYYYQANIPLKDAAILARCPD-----PQLRRIWRQRILD 78 (239)
T ss_pred HHHHHHHHhcc--cccccCcHHHHHhcCCCCHHHHHHHHHHhhhhhhcccHHHHHHHHcCCC-----HHHHHHHHHHHHH
Confidence 44444443332 2335699999999999999999999999999999999999999999999 56666665333 1
Q ss_pred h---H--HHHHHHHHHHHHHcCCCCC---CCC-cchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026406 93 G---L--HDEIAWFKKEASKWGVELS---ETV-PQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPD 163 (239)
Q Consensus 93 ~---i--~~E~~~h~~~~~~~gi~~~---~~~-~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~ 163 (239)
. . .+.+++..++.+.+|++.+ +.+ ..|.|+..++-.... ....++.+++++++. |.-=-.|-+.
T Consensus 79 hdG~~~~~ggie~WlrfaealGl~re~v~s~~~~lP~trfaVday~~f-~r~~~~~eavasslT-E~f~P~I~~~----- 151 (239)
T TIGR02111 79 HDGDHEEDGGIERWLRLAEAVGLDREYVLSTRGVLPGTRFAVDAYVHF-VREKSLLEAIASSLT-ELFAPQIHSE----- 151 (239)
T ss_pred hcCCCCCCCcHHHHHHHHHHhCCCHHHHhcccCCCHHHHHHHHHHHHH-HhcCCHHHHHHHHHH-HHHhHHHHHH-----
Confidence 0 0 1257899999999999974 333 479998888777766 356789999998765 4322233222
Q ss_pred CCCCchHHHHhhhc--CChH----HHHHHH-HHHHH-------HHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHH
Q 026406 164 TNTPPELQEVCQRW--GNDG----FGQYCH-SLKKI-------ANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 229 (239)
Q Consensus 164 ~~~~~~y~~Wi~~y--~s~~----f~~~v~-~~~~~-------ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~ 229 (239)
....|.+.| .+++ |..... .-+++ ++.+ .++ ++++++.++-+..|.-=+
T Consensus 152 -----ri~gl~~~Y~~~~~e~l~yF~~r~~qa~rd~e~~l~~~l~~~---~t~---------e~Q~~~l~al~fk~dvLw 214 (239)
T TIGR02111 152 -----RVAGMLQHYDFIDDAALAYFRKRLTQAPRDVEFGLDYVLDHA---TTR---------EKQEAALEALTFKCDVLW 214 (239)
T ss_pred -----HHHhHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---CCH---------HHHHHHHHHHHHHHHHHH
Confidence 123444443 2333 211111 11122 3332 244 678889999999999999
Q ss_pred Hhchhhh
Q 026406 230 EFWNMSR 236 (239)
Q Consensus 230 ~Fwd~a~ 236 (239)
.|+|..+
T Consensus 215 ~~LDal~ 221 (239)
T TIGR02111 215 AQLDALY 221 (239)
T ss_pred HHHHHHH
Confidence 9999876
No 10
>CHL00168 pbsA heme oxygenase; Provisional
Probab=97.57 E-value=0.011 Score=50.55 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=74.4
Q ss_pred chHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHHh
Q 026406 13 GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMA 92 (239)
Q Consensus 13 ~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~ 92 (239)
+++..|.+.-...=+.+-+.+|++.+..|.++.+.++.+|.|=|..-...-..+...... |-. ..... .
T Consensus 4 ~ls~~Lr~~T~~~H~~aE~~~f~k~ll~g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~~-~~~-------~~~~~---p 72 (238)
T CHL00168 4 NLATQLREGTTKSHSMAENVSFVKSFLGGVIDKKSYRKLVANLYFVYSAIEEEIEKNKEH-PLI-------KPIYF---Q 72 (238)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccc-------ccccc---h
Confidence 789999999888889999999999999999999999999999888777665555544311 000 00000 0
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CCCCcchHhHHHHHHHHHhc
Q 026406 93 GLHDEIAWFKKEASKWGVEL-SETVPQKANQVYCRFLESLM 132 (239)
Q Consensus 93 ~i~~E~~~h~~~~~~~gi~~-~~~~~~pa~~aY~~~l~~~~ 132 (239)
.+.+--.+-+++.--.|-++ +.++|+|+++.|++++..++
T Consensus 73 eL~R~~aLe~DL~~l~G~~w~~~~~p~pa~~~Yv~rI~~~~ 113 (238)
T CHL00168 73 ELNRKESLEKDLNYYYGDDWKSIIEPSPATKIYVDRIHKIS 113 (238)
T ss_pred hhhhhHHHHHHHHHHcCCCccccCCCChHHHHHHHHHHHHh
Confidence 11111122222322345444 35788999999999999995
No 11
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=97.56 E-value=0.015 Score=48.03 Aligned_cols=168 Identities=13% Similarity=0.114 Sum_probs=103.6
Q ss_pred chHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHHh
Q 026406 13 GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMA 92 (239)
Q Consensus 13 ~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~ 92 (239)
++++.|...-...=+.+-+|||++.|..|+++.+.++.||.+-|.+....-..+......... . .... .
T Consensus 1 ~~~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~s~~~Y~~~L~~~~~~~~~lE~~l~~~~~~~~~------~--~~~~---~ 69 (203)
T cd00232 1 SLSEELRAATRQLHEEAENLVFMKDLLKGFLSREGYARFLANLYLVYRALEALLEASKDNPYL------A--PLYL---P 69 (203)
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHccCCccc------c--cccC---c
Confidence 478889988888889999999999999999999999999999999999988887765432111 0 0000 0
Q ss_pred hHHHHHHHHHHHHHHcCCCCC--CCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH----HHHHhhccCCCCCC
Q 026406 93 GLHDEIAWFKKEASKWGVELS--ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVY----QESFAHCLEPDTNT 166 (239)
Q Consensus 93 ~i~~E~~~h~~~~~~~gi~~~--~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y----~~i~~~~~~~~~~~ 166 (239)
.. .-..+.++-++.+|.+.. ..+|.|++ .|.+++...+ ..+...+|.+++..+-.= ..|.+.+.+....
T Consensus 70 ~~-~r~~~L~~DL~~lg~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~lg~~YV~egs~l~GG~~i~~~l~~~~~~- 144 (203)
T cd00232 70 EL-ERAAALEKDLAYLGGSDWRVREPPLPAA-AYAARLREIA--EENPALLLGHAYVRYGADLSGGQVLAKIAQRALLL- 144 (203)
T ss_pred cc-cchHHHHHHHHHHhCCCccccCCCChHH-HHHHHHHHHH--hcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCC-
Confidence 00 112233444566777653 23455666 9999988773 345566677666654211 1112222211111
Q ss_pred CchHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 026406 167 PPELQEVCQRWGNDGFGQYCHSLKKIANRL 196 (239)
Q Consensus 167 ~~~y~~Wi~~y~s~~f~~~v~~~~~~ld~~ 196 (239)
++.=..++..|+.++-...-+.+...+|.+
T Consensus 145 ~~~~~~f~~~~g~~~~~~~w~~f~~~l~~~ 174 (203)
T cd00232 145 EGKGLAFYAFHGIADRGLFKREFREALDAL 174 (203)
T ss_pred CCccCccccCCCcCCHHHHHHHHHHHHhcC
Confidence 111134566666334455666677778875
No 12
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=96.61 E-value=0.054 Score=45.17 Aligned_cols=188 Identities=10% Similarity=0.174 Sum_probs=105.3
Q ss_pred HhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHHhhHHHHHH--------
Q 026406 28 GATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIA-------- 99 (239)
Q Consensus 28 ~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~i~~E~~-------- 99 (239)
++.+.||++.|..-+ -++...|+.|-.+|-.+-...+-.++.++....+ ..-...|. .++.+|..
T Consensus 20 s~nn~~~~~~i~t~S--~~~~~~vi~~ys~F~~~~~~~l~~A~~~~~~~~~--~~V~~El~---~Ni~EE~G~~~gk~sH 92 (231)
T PF12981_consen 20 SINNNPFLSHISTAS--FSQKELVIKQYSVFPKYNCGMLQRAAYCIRGFCW--PGVAQELQ---RNINEEMGEGCGKISH 92 (231)
T ss_dssp -TTT-CCHHGCCC----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---HHHHHHHH---HHHHHHTTTTTTT--H
T ss_pred hhcCCHHHHHhhhhh--HHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhcCC--cHHHHHHH---HhHHHhcCCCCCCcch
Confidence 456789998887654 4455566666666888888888888887776443 12223332 45656654
Q ss_pred --HHHHHHHH-cCCCCCCCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHH-------HHHHHHHhhccCCCC-CCCc
Q 026406 100 --WFKKEASK-WGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIE-------AVYQESFAHCLEPDT-NTPP 168 (239)
Q Consensus 100 --~h~~~~~~-~gi~~~~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~-------~~Y~~i~~~~~~~~~-~~~~ 168 (239)
++++-|.. +|.+.....|+++|.+...-+..+...+. -..|.++++.| .+-.+|..++..+.+ ....
T Consensus 93 y~~~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L~t~~~--s~vlGa~YAtE~~AIpEl~ll~ei~~~la~rk~~~~~~ 170 (231)
T PF12981_consen 93 YVVFRKALHTYFGFDVNNRMPSVATTHFLDSVLALFTWDS--SEVLGACYATEAAAIPELQLLYEIVNELAQRKGLHNSW 170 (231)
T ss_dssp HHHHHHHHHHHHS---TT----HHHHHHHHHHHHHCTS-H--HHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHH--
T ss_pred HHHHHHHHHHHhCCcccccCCcHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Confidence 66665555 99988889999999999999998853332 33444433322 334455544432110 0001
Q ss_pred hHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHhchhh
Q 026406 169 ELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMS 235 (239)
Q Consensus 169 ~y~~Wi~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a 235 (239)
..-++.+.|-+..-....+.+.+.++.... +. ++....++=|..++..=..||++-
T Consensus 171 s~l~F~d~HlDg~E~~H~d~L~~~l~~~i~--~e---------~q~~~f~~Gf~~mI~~m~~wW~~L 226 (231)
T PF12981_consen 171 SQLDFYDWHLDGTEQEHKDGLRQFLASYID--TE---------EQMPLFKDGFLAMIDIMEDWWKEL 226 (231)
T ss_dssp ----HHHHHCS----HHHHHHHHHHHTT----GG---------G-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcchHHHHHHHHHHHHHHHHcC--cc---------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112567777776677888889888887653 22 456778899999998888899763
No 13
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=96.25 E-value=0.31 Score=40.26 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=79.1
Q ss_pred CchHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHH
Q 026406 12 GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGM 91 (239)
Q Consensus 12 ~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~ 91 (239)
|+|+..|.+...+.=+.+-+++|++.+..|.++.+.+..+|.+=|.+....-..+........- ... ..
T Consensus 1 ~~l~~~Lr~~T~~~H~~~e~~~~~~~l~~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~------~~~--~~--- 69 (205)
T PF01126_consen 1 MSLSQRLREATRDLHERLEKSPFMKDLFAGDLSRDDYARFLQAFYHVYRALEAALDRNRDDPAL------APL--YF--- 69 (205)
T ss_dssp -SHHHHHHHHTHHHHHHHHTSHHHHHHHTTSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTT------GGG--S----
T ss_pred CcHHHHHHHHHHHHHHHHHcchhHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc------ccc--cC---
Confidence 6899999999999999999999999999999999999999999999988887776665332211 000 00
Q ss_pred hhHHHHHHHHHHHHHHcCCCC--CCCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHH
Q 026406 92 AGLHDEIAWFKKEASKWGVEL--SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWA 147 (239)
Q Consensus 92 ~~i~~E~~~h~~~~~~~gi~~--~~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~ 147 (239)
..+.+ ...-+.-+..++.+. +..++.|++.+|+.++..++.. +...+++.++.
T Consensus 70 ~~l~R-~~~L~~DL~~l~~~~~~~~~~~~~a~~~~~~~i~~~~~~--~p~~~lg~~YV 124 (205)
T PF01126_consen 70 PELRR-SAALEADLAALGGPDWRDDIEPSPATQAYVPHIRELAES--SPALLLGHAYV 124 (205)
T ss_dssp GHHHT-HHHHHHHHHHHHCTTHHHHCHHHHHHHHHHHHHHHHHHH--SGGGHHHHHHH
T ss_pred cchhH-HHHHHHHHHHhhCCCcccccCCChhHHHHHHHHHHHHcc--CHHHHHHHHHH
Confidence 00111 111122222232221 2356789999999999887422 33344444443
No 14
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.06 Score=44.78 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=71.8
Q ss_pred hHHHHHHHcHHHHHHhhhCHHHHhhhcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHH-h
Q 026406 14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGM-A 92 (239)
Q Consensus 14 ~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~e~F~~YL~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~-~ 92 (239)
+...|+.-.+.--..+-+..|+..+-+|-++.+.|+..+.|=|.....+-+... +..+. ..+.... -
T Consensus 3 la~~lR~gt~~ah~~aEnv~fmkcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~----~~~d~--------~~l~~i~fp 70 (238)
T COG5398 3 LAFKLRQGTQKAHTVAENVGFMKCFLKGVVERESFRKLLANLYFVYSALEAATQ----IHKDN--------PILSSIYFP 70 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHH----HhccC--------chhhhccch
Confidence 445566555555555666679999999999999999999999988877754433 33331 1111111 1
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CCCCcchHhHHHHHHHHHhcCCCc
Q 026406 93 GLHDEIAWFKKEASKWGVEL-SETVPQKANQVYCRFLESLMSPEV 136 (239)
Q Consensus 93 ~i~~E~~~h~~~~~~~gi~~-~~~~~~pa~~aY~~~l~~~~~~~~ 136 (239)
.+++--.+-+++....|-++ +++.++|++.+|+++++.+++..+
T Consensus 71 ~lnr~~tle~dl~~yyg~nwre~I~~sp~t~~yv~rv~~iaa~ap 115 (238)
T COG5398 71 ELNRKATLEKDLLYYYGNNWRENIQPSPATIAYVDRVRYIAATAP 115 (238)
T ss_pred hhhhHHHhhcCHHHHhcccHHHhcCcChhHHHHHHHHHHHHhcCc
Confidence 12222233344555566333 578999999999999999964433
No 15
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=92.10 E-value=0.45 Score=34.95 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCCCC----CCCcchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHH
Q 026406 95 HDEIAWFKKEASKWGVELS----ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESF 156 (239)
Q Consensus 95 ~~E~~~h~~~~~~~gi~~~----~~~~~pa~~aY~~~l~~~~~~~~~~~~~l~a~~~c~~~Y~~i~ 156 (239)
.....+++++++.+|++.+ .....|.+.++.+.+...+.....+..++.++...|.+-..+.
T Consensus 16 ~~H~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~ 81 (106)
T PF14518_consen 16 RSHPELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIY 81 (106)
T ss_dssp G-HHHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHH
Confidence 3578899999999999975 2345678999999998875444566777777766665544443
No 16
>PF15565 Imm16: Immunity protein 16
Probab=36.40 E-value=61 Score=24.14 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 026406 185 YCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 231 (239)
Q Consensus 185 ~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~F 231 (239)
-++.+.+.+++++...+. +.+..+..+|--.+++|++|
T Consensus 14 e~e~Fe~~L~~l~~~~d~---------~~I~~L~~~F~D~~d~eVmf 51 (106)
T PF15565_consen 14 ECEEFEEALNELAKYPDN---------DVIDDLCLIFDDETDHEVMF 51 (106)
T ss_pred HHHHHHHHHHHHHhcCCH---------hHHHHHHHHhcCccchHHHH
Confidence 357777888888877776 78888888998888888887
No 17
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=31.84 E-value=66 Score=25.34 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=32.1
Q ss_pred CHHHHhhhcCCCCHHHHHH-----HHHhHHHHHHHHHHHHHHHhhccc
Q 026406 32 HPFILAIRDGTVNYSSFKK-----WLGQDYIFVREFVAFAASVLIKAW 74 (239)
Q Consensus 32 HpFv~~l~~GtL~~e~F~~-----YL~QD~~Yl~~~~r~~a~~~~ka~ 74 (239)
-|.++.|..++||.+.+.. |-.|+.-|+...-..+.+++.++|
T Consensus 44 ~PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~LsIGna~ 91 (144)
T PF02840_consen 44 KPLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLSIGNAA 91 (144)
T ss_dssp HHHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHHTTB--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC
Confidence 3899999999999988764 456788888888888888888886
No 18
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=31.39 E-value=72 Score=22.77 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=24.3
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHHhhcChhhhccccchHHHHHHHHHHHHHHHH
Q 026406 174 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 227 (239)
Q Consensus 174 i~~y~s~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 227 (239)
|..|+-.+|-++|..+.+.- ..++ +....+...|.+.+.+
T Consensus 7 i~dyTE~EFl~~v~~i~~~~-----~~~e---------e~~d~lv~hF~~iteH 46 (85)
T PF01320_consen 7 ISDYTESEFLEFVKEIFNAE-----LKTE---------EEHDELVDHFEKITEH 46 (85)
T ss_dssp GGGSBHHHHHHHHHHHHHTC-----SSSC---------HHHHHHHHHHHHHH--
T ss_pred HHHhhHHHHHHHHHHHHcCC-----CCCH---------HHHHHHHHHHHHcCCC
Confidence 56677777766655553221 1233 6788888899888765
No 19
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=30.70 E-value=2.7e+02 Score=21.94 Aligned_cols=76 Identities=9% Similarity=-0.021 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHHHH-HHHHHHHHHHhhcccCCCCCChhHHHHHHHHHhhHHHHHHHHHHHHHHcCCCCCCCCcchHhHHH
Q 026406 46 SSFKKWLGQDYIFV-REFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVY 124 (239)
Q Consensus 46 e~F~~YL~QD~~Yl-~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~i~~E~~~h~~~~~~~gi~~~~~~~~pa~~aY 124 (239)
+.|... .||-++. ....+++...+.++.+ .+-...|-..+......+..-+..++.+|.++.. .++++...-
T Consensus 4 ~~~~~~-L~d~y~aE~q~~~~l~~~~~~a~~-----~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~-~~c~~~~gl 76 (159)
T PF05974_consen 4 DLFIDE-LRDLYSAEKQLLKALPKLAEAASS-----PELKAALEEHLEETEQQIERLEQIFEALGADPSA-EKCDAMEGL 76 (159)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHH-SS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-C-HH-HHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc-CcchHHHHH
Confidence 344444 4566666 6899999999999998 4445555555555677788888899999998743 334555555
Q ss_pred HHHH
Q 026406 125 CRFL 128 (239)
Q Consensus 125 ~~~l 128 (239)
+.-.
T Consensus 77 ~~e~ 80 (159)
T PF05974_consen 77 VAEA 80 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 20
>KOG2808 consensus U5 snRNP-associated RNA splicing factor [RNA processing and modification]
Probab=23.96 E-value=3.1e+02 Score=24.67 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=38.5
Q ss_pred HHHHhhhcCCCCHHHHHH-----HHHhHHHHHHHHHHHHHHHhhcccC
Q 026406 33 PFILAIRDGTVNYSSFKK-----WLGQDYIFVREFVAFAASVLIKAWK 75 (239)
Q Consensus 33 pFv~~l~~GtL~~e~F~~-----YL~QD~~Yl~~~~r~~a~~~~ka~~ 75 (239)
|-++.|..-+||.+.+.. |+.|+.-||..--..+-+++..||=
T Consensus 229 pLf~~lr~~~Lp~DI~~sLa~Ic~~~~~reyl~AndaYlklAIGNAPW 276 (341)
T KOG2808|consen 229 PLFRLLRRKNLPADIRQSLADICYLCQKREYLKANDAYLKLAIGNAPW 276 (341)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHccCCCC
Confidence 889999999999988764 6899999999999999999999984
No 21
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=20.52 E-value=69 Score=29.15 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=28.5
Q ss_pred chHHHHHHHcH---HHHHHhhhCHHHHhhhcCCCCHHHHHH
Q 026406 13 GVIDTWLRKHR---LIYIGATRHPFILAIRDGTVNYSSFKK 50 (239)
Q Consensus 13 ~~~~~L~~~~~---~~w~~~~~HpFv~~l~~GtL~~e~F~~ 50 (239)
+|++.-+++.. +.-+++++||||++......+...|..
T Consensus 313 ~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~~~~~vd~~~~~~ 353 (364)
T KOG0581|consen 313 SFVSCCLRKDPSERPSAKQLLQHPFIKKFEDPNVDMASFVR 353 (364)
T ss_pred HHHHHHhcCCcccCCCHHHHhcCHHHhhcccccccHHHHHH
Confidence 46666665543 567999999999999998888776544
Done!