BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026407
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 103/141 (73%), Positives = 125/141 (88%), Gaps = 1/141 (0%)
Query: 61 STETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELRE 120
S ++PP+GYRRNVGICL+N+ KK IFAA+R+ IP WQMPQGG DEGED NAA+RELRE
Sbjct: 5 SMDSPPEGYRRNVGICLMNNDKK-IFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELRE 63
Query: 121 ETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG 180
ETGVTSAE +AE PYWLTYDFP KV++KLN +WG+++KGQAQKWFLFKFTG+++EINLLG
Sbjct: 64 ETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLG 123
Query: 181 DGSEKPEFNEWRWMFPEQVLE 201
DGSEKPEF EW W+ PEQ+++
Sbjct: 124 DGSEKPEFGEWSWVTPEQLID 144
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 70/132 (53%), Gaps = 13/132 (9%)
Query: 67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
DGYR NVGI + N + ++A R ++WQ PQGG + GE A REL EE G++
Sbjct: 5 DGYRPNVGIVICNRQGQVMWA--RRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSR 62
Query: 127 AE--FLAETPYWLTYDFPLKVKQKLNRRWGTN--YKGQAQKWFLFKFTGKEEEINLLGDG 182
+ LA T WL Y P ++ RW T GQ QKWFL + + EIN+
Sbjct: 63 KDVRILASTRNWLRYKLPKRLV-----RWDTKPVCIGQKQKWFLLQLVSGDAEINM--QT 115
Query: 183 SEKPEFNEWRWM 194
S PEF+ WRW+
Sbjct: 116 SSTPEFDGWRWV 127
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
DGYR NVGI + N + ++A R ++WQ PQGG + GE A R L EE G++
Sbjct: 5 DGYRPNVGIVICNRQGQVMWA--RRFGQHSWQFPQGGINPGESAEQAMYRALFEEVGLSR 62
Query: 127 AE--FLAETPYWLTYDFPLKVKQKLNRRWGTN--YKGQAQKWFLFKFTGKEEEINLLGDG 182
+ LA T WL Y P ++ RW T GQ QKWFL + + EIN+
Sbjct: 63 KDVRILASTRNWLRYKLPKRLV-----RWDTKPVCIGQKQKWFLLQLVSGDAEINM--QT 115
Query: 183 SEKPEFNEWRWM 194
S PEF+ WRW+
Sbjct: 116 SSTPEFDGWRWV 127
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 69 YRRNVGICLI--NSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGV-T 125
Y+R V I ++ K++ R P WQ G +EGE AA+RE++EE +
Sbjct: 6 YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDV 65
Query: 126 SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKF 169
AE L T +F ++ L R+ + WF
Sbjct: 66 VAEQLTLIDCQRTVEF--EIFSHLRHRYAPGVTRNTESWFCLAL 107
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 76 CLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
C++++ K + I+ W P G + E L+ AA REL EETG+++
Sbjct: 10 CVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISA 60
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 21/130 (16%)
Query: 94 PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRW 153
P+ W P+G D GED AA+RE +EE +T + T + K K K + W
Sbjct: 29 PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYW 88
Query: 154 GTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR-KPCGLIFR 212
++N D E W+W E ++ G + R
Sbjct: 89 LA-------------------KLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLR 129
Query: 213 YFSPFCLAPF 222
FS F LA F
Sbjct: 130 KFSAF-LAGF 138
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 67 DGYRRNVG-ICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGV 124
DGY++ +C + S++++ + P W +P GG + E+ AA+RE+ EE GV
Sbjct: 37 DGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS--A 127
+R +C + + ++ + P W +P GG + E+ AA+RE+ EE GV
Sbjct: 3 KRAACLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLG 62
Query: 128 EFLA-----ETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWF 165
L + P TY + L V + L + G+ ++WF
Sbjct: 63 RLLGVFEQNQDPEHRTYVYVLTVTELLEDWEDSVSIGRKREWF 105
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLA 131
G + N+ ++ + R+ W P+G + GE L AA+RE+ EETGV + L
Sbjct: 4 GAGGVVFNAKREVLLLRDRMGF---WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP 60
Query: 132 ETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEE-EINLLGDGSEKPEFNE 190
P Y P V+++++ WFL + G E + G G PE
Sbjct: 61 LYPT--RYVNPKGVEREVH-------------WFLMRGEGAPRLEEGMTGAGWFSPEEAR 105
Query: 191 WRWMFPEQV 199
FPE +
Sbjct: 106 ALLAFPEDL 114
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 73 VGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
G S++K + R + W+ P G ++ ED+ + A+RE+ EETG+ S
Sbjct: 30 AGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKS 83
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 96 TWQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLT 138
W P+G + GE A+RE+ EETGV +++ E YW T
Sbjct: 26 VWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYT 70
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal Complex,
Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
Length = 129
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 73 VGICLINSSKKKIFAATRI---HIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
+ + +I + +IF R H+ + P G + GE A +REL+EE G+T F
Sbjct: 6 IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65
Query: 130 -LAETPYWLTYDFP 142
L E L Y+FP
Sbjct: 66 SLFEK---LEYEFP 76
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLA 131
G + N+ ++ + R+ W P+G + GE L AA+RE+ E+TGV + L
Sbjct: 4 GAGGVVFNAKREVLLLRDRMGF---WVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLLP 60
Query: 132 ETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEE-EINLLGDGSEKPEFNE 190
P Y P V+++++ WFL + G E + G G PE
Sbjct: 61 LYPT--RYVNPKGVEREVH-------------WFLMRGEGAPRLEEGMTGAGWFSPEEAR 105
Query: 191 WRWMFPEQV 199
FPE +
Sbjct: 106 ALLAFPEDL 114
>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
pdb|3OGA|B Chain B, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
Length = 165
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 86 FAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKV 145
A R P W + GG + GE + A RE+REE G L++ W T+ +++
Sbjct: 46 MADNRGVFPGQWALSGGGVEPGERIEEALRREIREELG--EQLILSDITPW-TFRDDIRI 102
Query: 146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQV 199
K + R Y + +F +I + EF ++ W+ PE++
Sbjct: 103 KTYADGRQEEIY----MIYLIFDCVSANRDICI------NDEFQDYAWVKPEEL 146
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS--- 126
+R +C + + ++ + P W +P GG + E+ AA+RE+ EE GV
Sbjct: 11 KRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLG 70
Query: 127 ---AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWF 165
F + TY + L V + L + G+ ++WF
Sbjct: 71 RLLGIFENQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWF 112
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 71 RNVGICLINSSKKKIFAATRIHIPYT------WQMPQGGADEGEDLINAALRELREETGV 124
R G+ L+N + I IP W +P G ++GE+ +AA+RE EETG+
Sbjct: 14 RAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
+ W P+G + GED + ALRE +EE G+ + +
Sbjct: 36 HHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQL 70
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYW 136
+ ++P G DEGE AA RELREE G AE L P +
Sbjct: 68 FLLEVPAGKVDEGETPEAAARRELREEVG-AEAETLIPLPSF 108
>pdb|3N77|A Chain A, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
pdb|3N77|B Chain B, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
Length = 144
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 86 FAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKV 145
A R P W + GG + GE + A RE+REE G L++ W T+ +++
Sbjct: 25 MADNRGVFPGQWALSGGGVEPGERIEEALRREIREELG--EQLILSDITPW-TFRDDIRI 81
Query: 146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFP 196
K + R Y + +F +I + EF ++ W+ P
Sbjct: 82 KTYADGRQEEIY----MIYLIFDCVSANRDICI------NDEFQDYAWVAP 122
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 96 TWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPY 135
+W P+G + E+ I+ +RE++EE G +++ + +
Sbjct: 29 SWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQF 68
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 78 INSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
+N + K F +I +W G +D +D + A++EL+EETGV +
Sbjct: 53 VNKERNK-FLXIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKN 100
>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
Length = 145
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 102 GGADEGEDLINAALRELREETGVTSAEFL 130
GG ++GEDL AA REL EE G ++E++
Sbjct: 39 GGVEKGEDLGAAAARELLEEVGGAASEWV 67
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETG 123
Y + P G D+GE AALREL EETG
Sbjct: 90 YCIEFPAGLIDDGETPEAAALRELEEETG 118
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETG 123
Y + P G D+GE AALREL EETG
Sbjct: 77 YCIEFPAGLIDDGETPEAAALRELEEETG 105
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 97 WQMPQGGADEGEDLINAALRELREETG 123
W P+G D+ E ++ A+RE+ EETG
Sbjct: 123 WGFPKGKIDKDESDVDCAIREVYEETG 149
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETG 123
Y + P G D+GE AALREL EETG
Sbjct: 78 YCIEFPAGLIDDGETPEAAALRELEEETG 106
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 97 WQMPQGGADEGEDLINAALRELREETG 123
W P+G D+ E ++ A+RE+ EETG
Sbjct: 128 WGFPKGKIDKDESDVDCAIREVYEETG 154
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 23/108 (21%)
Query: 98 QMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNY 157
++P G + GED + AA REL EETG++ LTY F V +
Sbjct: 63 EIPAGLIEPGEDPLEAARRELAEETGLSGD---------LTYLFSYFVS--------PGF 105
Query: 158 KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205
+ FL + KE E + ++ E E WM PE+ LER ++
Sbjct: 106 TDEKTHVFLAENL-KEVEAH-----PDEDEAIEVVWMRPEEALERHQR 147
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETG 123
Y + P G D+GE AALREL EETG
Sbjct: 90 YCIEFPAGLIDDGETPEAAALRELEEETG 118
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETG 123
Y + P G D+GE AALREL EETG
Sbjct: 92 YCIEFPAGLIDDGETPEAAALRELEEETG 120
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETGVTSAEF 129
+ W P+G + GED + ALR +EE G+ + +
Sbjct: 41 HHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 82 KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
KK+ F A R W G EGE + + A REL+EE+G+T
Sbjct: 43 KKRGFGAGR------WNGFGGKVQEGETIEDGARRELQEESGLT 80
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 82 KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125
KK+ F A R W G EGE + + A REL+EE+G+T
Sbjct: 23 KKRGFGAGR------WNGFGGKVQEGETIEDGARRELQEESGLT 60
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 97 WQMPQGGADEGEDLINAALRELREETGVTS 126
W +P G DE E AA REL EET +T
Sbjct: 69 WAVPGGFVDENESAEQAAERELEEETSLTD 98
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 97 WQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRR 152
W P+G ++ E +AA+RE+ EETG + PY ++PL + K R
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEETGSP----VKLGPYLCEVEYPLSEEGKKTRH 102
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 23/108 (21%)
Query: 98 QMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNY 157
++P G + GED + AA REL E+TG++ LTY F V +
Sbjct: 63 EIPAGLIEPGEDPLEAARRELAEQTGLSGD---------LTYLFSYFVS--------PGF 105
Query: 158 KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205
+ FL + KE E + ++ E E WM PE+ LER ++
Sbjct: 106 TDEKTHVFLAENL-KEVEAH-----PDEDEAIEVVWMRPEEALERHQR 147
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 23/108 (21%)
Query: 98 QMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNY 157
++P G + GED + AA R+L EETG++ LTY F V +
Sbjct: 63 EIPAGLIEPGEDPLEAARRQLAEETGLSGD---------LTYLFSYFVS--------PGF 105
Query: 158 KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205
+ FL + KE E + ++ E E WM PE+ LER ++
Sbjct: 106 TDEKTHVFLAENL-KEVEAH-----PDEDEAIEVVWMRPEEALERHQR 147
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 97 WQMPQGGADEGEDLINAALRELREETGV 124
+ +P G A+ GE A +RE+REETG+
Sbjct: 39 YNLPGGKANRGELRSQALIREIREETGL 66
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 96 TWQMPQGGADEGEDLINAALRELREETGV 124
+W +P G + GE ++ A RE++EE G+
Sbjct: 47 SWYLPAGRMEPGETIVEALQREVKEEAGL 75
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 96 TWQMPQGGADEGEDLINAALRELREETGVTSAE 128
+W +P G + E ++ LRE +EETGV ++
Sbjct: 71 SWALPGGFVNRNESTEDSVLRETKEETGVVISQ 103
>pdb|4HZ6|A Chain A, Crystal Structure Of Bglb
pdb|4HZ7|A Chain A, Crystal Structure Of Bglb With Glucose
pdb|4HZ8|A Chain A, Crystal Structure Of Bglb With Natural Substrate
Length = 444
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL 143
Y W +PQ DEG L + E T A + P W+T++ P+
Sbjct: 119 YHWDLPQWVEDEGGWLSRESASRFAEYTHALVAALGDQIPLWVTHNEPM 167
>pdb|3CMJ|A Chain A, Crystal Structure Of Engineered Beta-Glucosidase From Soil
Metagenome
Length = 465
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL 143
Y W +PQ DEG L + E T A + P W+T++ P+
Sbjct: 140 YHWDLPQWVEDEGGWLSRESASRFAEYTHALVAALGDQIPLWVTHNEPM 188
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 97 WQMPQGGADEGEDLINAALRELREETGV 124
W +P G + GE A +RE+ EETG+
Sbjct: 45 WSLPAGAIEPGETPEEAVIREVWEETGL 72
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 83 KKIFAATRIHIPYT--WQMPQGGADEGEDLINAALRELREETGV 124
+++ ++++P+ P G + GE AA+RE+ EETG+
Sbjct: 23 QRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 97 WQMPQGGADEGEDLINAALRELREETGVT 125
W P G + GE ++ RE EETG+T
Sbjct: 28 WVAPGGKMEAGESILETVKREYWEETGIT 56
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 97 WQMPQGGADEGEDLINAALRELREETGVT 125
W +P G + E L RE+ EETG+T
Sbjct: 38 WDLPGGKVNPDESLKEGVAREVWEETGIT 66
>pdb|1VHZ|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHZ|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETGVTSAEF-----LAETPYWLTYDFPLKVKQKL 149
Y +G D GE + AA REL+EE G + + L+ P + + + V Q L
Sbjct: 75 YELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDL 134
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 97 WQMPQGGADEGEDLINAALRELREETGV-TSAEFLAETPYW-LTYD-FPLKVKQKLNRRW 153
W+ P G + GE A +REL EE GV T A LA + +YD F L R W
Sbjct: 37 WEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHLLXPLYACRSW 96
Query: 154 ---GTNYKGQAQKWF 165
T +GQ W
Sbjct: 97 RGRATAREGQTLAWV 111
>pdb|1VHG|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHG|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 95 YTWQMPQGGADEGEDLINAALRELREETGVTSAEF-----LAETPYWLTYDFPLKVKQKL 149
Y +G D GE + AA REL+EE G + + L+ P + + + V Q L
Sbjct: 75 YELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSXAPSYFSSKXNIVVAQDL 134
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 97 WQMPQGGADEGEDLINAALRELREETGV 124
W+ P G ++GE + +REL EE GV
Sbjct: 58 WEFPGGKVEQGETPEASLIRELEEELGV 85
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1YNJ|D Chain D, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNJ|J Chain J, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|D Chain D, Taq Rna Polymerase-rifampicin Complex
pdb|1YNN|J Chain J, Taq Rna Polymerase-rifampicin Complex
Length = 1524
Score = 26.9 bits (58), Expect = 8.8, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 94 PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRW 153
PY ++ + G E +DL L LR+E V + FL P +T PL V+ ++
Sbjct: 248 PYLFRAEESGVVELKDLAEGHLIYLRQEEEVVARYFL---PAGMT---PLVVEGEIVEVG 301
Query: 154 GTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEW 191
+G+ T KE E GD F EW
Sbjct: 302 QPLAEGKGLLRLPRHMTAKEVEAEEEGDSVHLTLFLEW 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,135,852
Number of Sequences: 62578
Number of extensions: 293844
Number of successful extensions: 562
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 59
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)