BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026407
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNH4|NUD27_ARATH Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27
PE=1 SV=1
Length = 227
Score = 236 bits (603), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 125/211 (59%), Positives = 153/211 (72%), Gaps = 16/211 (7%)
Query: 17 VSQSYPTKLVKFASVPLELQQLPR------KPLCCSCDDSSSSLSSFTALSTETPPDGYR 70
+ +S + + F+S P++ L + KPL S +LSS A + E+PP GYR
Sbjct: 9 IGKSAISVHLDFSSFPVKFSCLKQFSVSSPKPLVVL----SVALSS-PARTVESPPVGYR 63
Query: 71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130
+NVGICL+ S +KIF A++IHIP TWQMPQGGADEGEDL NAA RELREETGVTSAEF+
Sbjct: 64 KNVGICLV-SPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTSAEFI 122
Query: 131 AETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNE 190
AE P WLTYDFP +VK KLNR+W T+YKGQAQKWFLFKFTGKEEEINLLGDG+ KPEF
Sbjct: 123 AEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGDGTAKPEFKV 182
Query: 191 WRWMFPEQVLERV---RKPC-GLIFRYFSPF 217
W WM PEQV+E ++P + + F+P+
Sbjct: 183 WSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213
>sp|Q9CAF2|NUD26_ARATH Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26
PE=1 SV=1
Length = 216
Score = 220 bits (561), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 137/184 (74%), Gaps = 12/184 (6%)
Query: 19 QSYPTKLVKFASVPLELQQLPRKPLCCSCDDSS-SSLSSFTALSTETPPDGYRRNVGICL 77
++YP+K +KF+S+P C S SS S+ S E+PP+GYRRNVG+CL
Sbjct: 22 RNYPSKPIKFSSLPF----------LHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCL 71
Query: 78 INSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWL 137
+NSSKK IF A+R+ IP WQMPQGG DEGED A +REL+EETGV SAE LAE P+W+
Sbjct: 72 MNSSKK-IFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWI 130
Query: 138 TYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPE 197
TYDFP V++KL RWG+++KGQAQKWFL KFTGK+EEINLLGDG+EKPEF EW W P+
Sbjct: 131 TYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDGTEKPEFGEWSWTSPD 190
Query: 198 QVLE 201
QV+E
Sbjct: 191 QVVE 194
>sp|Q9C6Z2|NUD25_ARATH Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1
Length = 175
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 102/143 (71%), Gaps = 4/143 (2%)
Query: 63 ETPPDGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREET 122
E P GYR NVG+CLINS +F A+R+++P WQMPQGG ++GED +AA+REL+EET
Sbjct: 2 ENLPPGYRPNVGVCLINSDNL-VFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60
Query: 123 GVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEE--EINLLG 180
GV SAE ++E P WLTYDFP VK K+NR WG + GQAQKW+L + E+ EINL
Sbjct: 61 GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120
Query: 181 DGSEKPEFNEWRWMFPEQVLERV 203
+ ++ EF EW+W PE+V+E+
Sbjct: 121 NEADS-EFAEWKWAKPEEVVEQA 142
>sp|Q2RV14|RPPH_RHORT RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rppH PE=3 SV=1
Length = 165
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 7/126 (5%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128
YR+ VGI LIN+ + ++F A R+ P WQMPQGG D GED AA RE+ EE G +A
Sbjct: 14 YRQGVGIMLINA-RGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGTRNAL 72
Query: 129 FLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEF 188
L ET WL YD P +++ +L WG ++GQ QKWF F+FTG++ +INL + PEF
Sbjct: 73 LLGETAGWLGYDLPEELRGRL---WGGRFQGQRQKWFAFRFTGQDADINL---ATAHPEF 126
Query: 189 NEWRWM 194
+ WRW+
Sbjct: 127 DAWRWV 132
>sp|B9KN59|RPPH_RHOSK RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 /
KCTC 12085) GN=rppH PE=3 SV=1
Length = 162
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 10/138 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
YR VGI LIN + IFA RI P WQMPQGG DEGE AALREL EETG+ +
Sbjct: 12 YRPCVGIVLINR-EGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAE 70
Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
EF+A+ P W+TYD P ++ L R WG Y+GQ QKWFL+++ G +EE+ G G++
Sbjct: 71 RVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEV---GIGTDH 124
Query: 186 PEFNEWRWMFPEQVLERV 203
EF+ WRW+ E+++ +
Sbjct: 125 AEFSCWRWIGAEEMVAAI 142
>sp|Q3IZC1|RPPH_RHOS4 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1
Length = 162
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 10/138 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
YR VGI LIN + IFA RI P WQMPQGG DEGE AALREL EETG+ +
Sbjct: 12 YRPCVGIVLINR-EGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAE 70
Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
EF+A+ P W+TYD P ++ L R WG Y+GQ QKWFL+++ G +EE+ G G++
Sbjct: 71 RVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEV---GIGTDH 124
Query: 186 PEFNEWRWMFPEQVLERV 203
EF+ WRW+ E+++ +
Sbjct: 125 AEFSCWRWIGAEEMVAAI 142
>sp|A3PMX6|RPPH_RHOS1 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rppH PE=3 SV=1
Length = 162
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 89/138 (64%), Gaps = 10/138 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
YR VGI LIN + IFA RI P WQMPQGG DEGE AALREL EETG+ +
Sbjct: 12 YRPCVGIVLINR-EGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAE 70
Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
EF+A+ P W+TYD P ++ L R WG Y+GQ QKWFL+++ G ++E+ + G++
Sbjct: 71 RVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDDEVGI---GTDH 124
Query: 186 PEFNEWRWMFPEQVLERV 203
EF+ WRW+ E+++ +
Sbjct: 125 AEFSCWRWIGAEEMVAAI 142
>sp|A8LKJ8|RPPH_DINSH RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DFL 12)
GN=rppH PE=3 SV=1
Length = 160
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 12/139 (8%)
Query: 69 YRRNVGICLINSSKKKIFAATRI--HIPYTWQMPQGGADEGEDLINAALRELREETGVT- 125
YR+ VG+ L + + + +F R +P WQMPQGG ++GED AALREL EETGV
Sbjct: 11 YRKCVGVVLWDGAGR-VFTGQRYDSELP-AWQMPQGGIEDGEDARTAALRELVEETGVAV 68
Query: 126 -SAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
E LAETP W+ YD P ++ + R W YKGQAQ+W L KF G + +IN+ ++
Sbjct: 69 EKVEVLAETPDWIKYDLPPEI---VPRIWKGRYKGQAQRWVLMKFLGSDADINI---ETK 122
Query: 185 KPEFNEWRWMFPEQVLERV 203
PEF+EWRW+ P VL+ +
Sbjct: 123 HPEFSEWRWLEPASVLDSI 141
>sp|A4WWV6|RPPH_RHOS5 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rppH PE=3 SV=1
Length = 162
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
YR VGI LIN + IFA RI P WQMPQGG D E AALREL+EETG+
Sbjct: 12 YRPCVGIVLINR-EGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPED 70
Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
EF+A+ P W+TYD P + L R WG Y+GQ QKWFLF++ G +E+I G +E
Sbjct: 71 LVEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWFLFRYLGTDEQI---GIATEH 124
Query: 186 PEFNEWRWMFPEQVLERV 203
EF+ WRW+ E+++ +
Sbjct: 125 AEFSCWRWIGAEEMVASI 142
>sp|Q3SVH3|RPPH_NITWN RNA pyrophosphohydrolase OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=rppH PE=3 SV=1
Length = 170
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 76/132 (57%), Gaps = 12/132 (9%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHI-----PYTWQMPQGGADEGEDLINAALRELREETG 123
YR VG+ LIN + +F R + Y WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGMMLINE-RGLVFVGRRAGVEQVDDSYVWQMPQGGVDPGEDTWLAAKRELYEETS 67
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLL--GD 181
V S E LAE P WLTYD P V R W Y+GQ QKW+ +F G++ EIN+ GD
Sbjct: 68 VRSIEKLAEIPDWLTYDIPRVVA---GRAWKGRYRGQRQKWYAVRFIGEDNEINIANPGD 124
Query: 182 GSEKPEFNEWRW 193
G KPEF WRW
Sbjct: 125 G-HKPEFTAWRW 135
>sp|A4YKE4|RPPH_BRASO RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain ORS278)
GN=rppH PE=3 SV=1
Length = 168
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 73/132 (55%), Gaps = 10/132 (7%)
Query: 69 YRRNVGICLINSSK-----KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123
YR VGI LINS ++ + + WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDAWEAAKRELYEETS 68
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLL--GD 181
V S E LAE WLTYD P V R W Y+GQ QKWF +FTGK+ EI++ G
Sbjct: 69 VRSVEKLAEIDDWLTYDIPRTVA---GRAWKGRYRGQRQKWFALRFTGKDSEIDVEHPGG 125
Query: 182 GSEKPEFNEWRW 193
G K EF WRW
Sbjct: 126 GHHKAEFITWRW 137
>sp|Q13DN7|RPPH_RHOPS RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
BisB5) GN=rppH PE=3 SV=1
Length = 167
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 69 YRRNVGICLINSSK-----KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123
YR VG+ LIN ++ + + WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGMMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETN 68
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
V S E + E P WL YD P V R W Y+GQ QKWF +FTG + EI++ G
Sbjct: 69 VRSVEKIGEVPDWLIYDIPRTVA---GRAWKGRYRGQRQKWFAVRFTGADSEIDVGAPGG 125
Query: 184 EKPEFNEWRW 193
KPEF WRW
Sbjct: 126 HKPEFTGWRW 135
>sp|Q2J3I9|RPPH_RHOP2 RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
HaA2) GN=rppH PE=3 SV=1
Length = 167
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 69 YRRNVGICLINSSK-----KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123
YR VG+ LIN + ++ + + WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGMMLINRAGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETN 68
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
V S E +AE P WL YD P V R W Y+GQ QKWF +FTG++ EI+++
Sbjct: 69 VRSVEKIAEVPDWLIYDIPRTVA---GRAWKGRYRGQRQKWFAIRFTGQDSEIDIIAPPG 125
Query: 184 EKPEFNEWRW----MFPEQVLERVRKPCGLIFRYFSPFCLA 220
K EF WRW P+ ++ R + + FS +A
Sbjct: 126 HKSEFTSWRWEPMLNLPDLIVPFKRPVYERVVKEFSQLAIA 166
>sp|Q16BL5|RPPH_ROSDO RNA pyrophosphohydrolase OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rppH PE=3 SV=1
Length = 160
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 8/137 (5%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS-- 126
YR VG+ L+N + R + WQMPQGG ++GED AALREL EETGV
Sbjct: 11 YRPCVGVMLMNGQGEVFVGQRRDNNVAAWQMPQGGVEKGEDPRAAALRELWEETGVNPEL 70
Query: 127 AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
AE +AET WL YD P + KL W Y+GQ QKWFL +F G + +IN+ +E P
Sbjct: 71 AEVVAETEDWLPYDLPYDLVPKL---WKGRYRGQEQKWFLMRFHGADSDINI---ATEHP 124
Query: 187 EFNEWRWMFPEQVLERV 203
EF++WRW+ ++E +
Sbjct: 125 EFSQWRWLPAADLVENI 141
>sp|P61786|RPPH_RHOPA RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rppH PE=3 SV=1
Length = 168
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 69 YRRNVGICLINSSK-----KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123
YR VG+ LIN ++ + + WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGVMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWKAAKRELYEETS 68
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG-DG 182
V S E LAE P WL YD P V R W Y+GQ QKWF +FTG + EIN++ G
Sbjct: 69 VNSVEKLAEVPDWLIYDIPRTVA---GRAWKGRYRGQRQKWFAARFTGADSEINVVHPGG 125
Query: 183 SEKPEFNEWRW----MFPEQVLERVRKPCGLIFRYFSPFCLA 220
K EF WRW PE ++ R + + FS A
Sbjct: 126 GHKAEFTSWRWEPMHNLPELIVPFKRPVYERVVKEFSQLAAA 167
>sp|Q9A2W6|RPPH_CAUCR RNA pyrophosphohydrolase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rppH PE=3 SV=1
Length = 172
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 69 YRRNVGICLINSSKKKIFAA-TRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA 127
+R NVG+ L + + R PY WQ PQGG DEGEDL AA REL EETGVTS
Sbjct: 9 HRPNVGVVLFHPDGRVWLGRRHRQAPPYNWQFPQGGVDEGEDLEVAARRELAEETGVTSV 68
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
E L T W+TYDFP +V N + ++GQ Q WF ++F G+E EI+L D E E
Sbjct: 69 ELLGRTEGWITYDFPPEV--MANPKHARGWRGQKQVWFAYRFVGEESEIDLEAD--EHIE 124
Query: 188 FNEWRW 193
F+ WRW
Sbjct: 125 FDAWRW 130
>sp|B8H5H3|RPPH_CAUCN RNA pyrophosphohydrolase OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=rppH PE=3 SV=1
Length = 172
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 69 YRRNVGICLINSSKKKIFAA-TRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA 127
+R NVG+ L + + R PY WQ PQGG DEGEDL AA REL EETGVTS
Sbjct: 9 HRPNVGVVLFHPDGRVWLGRRHRQAPPYNWQFPQGGVDEGEDLEVAARRELAEETGVTSV 68
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
E L T W+TYDFP +V N + ++GQ Q WF ++F G+E EI+L D E E
Sbjct: 69 ELLGRTEGWITYDFPPEV--MANPKHARGWRGQKQVWFAYRFVGEESEIDLEAD--EHIE 124
Query: 188 FNEWRW 193
F+ WRW
Sbjct: 125 FDAWRW 130
>sp|Q89X78|RPPH_BRAJA RNA pyrophosphohydrolase OS=Bradyrhizobium japonicum (strain USDA
110) GN=rppH PE=3 SV=1
Length = 167
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 69 YRRNVGICLINSSKKKIFAATR------IHIPYTWQMPQGGADEGEDLINAALRELREET 122
YR VG+ LIN+ K +F R I + WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGVMLINA-KGLVFIGRRAGGIEHIDDTHVWQMPQGGVDPGEDTWAAAKRELYEET 67
Query: 123 GVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG-D 181
V S E L E P WL YD P V R W Y+GQ QKWF +FTGK+ EIN+
Sbjct: 68 SVRSVERLGEVPDWLIYDIPRTVA---GRAWKGRYRGQRQKWFAVRFTGKDSEINVENPG 124
Query: 182 GSEKPEFNEWRW 193
G K EF WRW
Sbjct: 125 GGHKAEFVSWRW 136
>sp|A5FWY8|RPPH_ACICJ RNA pyrophosphohydrolase OS=Acidiphilium cryptum (strain JF-5)
GN=rppH PE=3 SV=1
Length = 164
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGV 124
YR NVG L S KI A R + Y WQ+PQGG D ED A LREL EE G
Sbjct: 9 YRSNVGAALF-SRAGKILVARRADLGPDAAYQWQLPQGGIDGDEDPAAAVLRELDEEIGT 67
Query: 125 TSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
T+ E L E P WL+YDFP V K G ++GQ Q+WF +F G ++ I L D
Sbjct: 68 TAVELLGEIPEWLSYDFPPDVVAKF----GARHRGQRQRWFALRFLGTDDMIRL--DAHA 121
Query: 185 KPEFNEWRW 193
PEF+EWRW
Sbjct: 122 HPEFDEWRW 130
>sp|B3CSR8|RPPH_ORITI RNA pyrophosphohydrolase OS=Orientia tsutsugamushi (strain Ikeda)
GN=rppH PE=3 SV=1
Length = 161
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 86/156 (55%), Gaps = 12/156 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ +IN KK+IF RI WQMPQGG GE A LRE++EE G A
Sbjct: 13 YRIGVGMVIINQ-KKEIFTGQRIDSARQYWQMPQGGIILGETYSKAVLREMKEEIGCNKA 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +Y P + KL W +N+KGQ QKWFL KF GK+E+IN+ + PE
Sbjct: 72 IIMAESRNWYSYHIPKFLVHKL---WNSNFKGQKQKWFLIKFLGKDEDINI---NTIYPE 125
Query: 188 FNEWRWMFPEQVLERV----RKPCGLIFRYFSPFCL 219
F++W+WM Q++ RK + F F L
Sbjct: 126 FSQWKWMNSNQLINNALPFKRKLYKAVINEFHIFLL 161
>sp|A5CD16|RPPH_ORITB RNA pyrophosphohydrolase OS=Orientia tsutsugamushi (strain Boryong)
GN=rppH PE=3 SV=1
Length = 161
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 86/156 (55%), Gaps = 12/156 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ +IN KK+IF RI WQMPQGG GE A LRE++EE G A
Sbjct: 13 YRIGVGMVIINQ-KKEIFTGQRIDSARQYWQMPQGGIILGETYSKAVLREMKEEIGCNKA 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +Y P + KL W +N+KGQ QKWFL KF GK+E+IN+ + PE
Sbjct: 72 IIMAESRNWYSYHIPKFLVHKL---WNSNFKGQKQKWFLIKFLGKDEDINI---NTIYPE 125
Query: 188 FNEWRWMFPEQVLERV----RKPCGLIFRYFSPFCL 219
F++W+WM Q++ RK + F F L
Sbjct: 126 FSQWKWMNSNQLINNALPFKRKLYKAVINEFHIFLL 161
>sp|A5E954|RPPH_BRASB RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=rppH PE=3 SV=1
Length = 168
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 69 YRRNVGICLINSSK-----KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123
YR VGI LINS ++ + + WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDAHVWQMPQGGVDPGEDAWEAAKRELYEETS 68
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLL--GD 181
V S E LAE WLTYD P V R W Y+GQ QKWF +FTG + EI++ G
Sbjct: 69 VRSVEKLAEIDDWLTYDIPRTVA---GRAWKGRYRGQRQKWFALRFTGTDTEIDVERPGG 125
Query: 182 GSEKPEFNEWRW 193
G K EF WRW
Sbjct: 126 GVHKAEFISWRW 137
>sp|Q2G7H8|RPPH_NOVAD RNA pyrophosphohydrolase OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=rppH PE=3 SV=1
Length = 161
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 83/135 (61%), Gaps = 10/135 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTS 126
YR VG+ L+NS + ++F RI WQMPQGG D+GE+L AALREL EETGV +
Sbjct: 10 YRPCVGVMLVNS-QGRVFVGRRIDDKDGVAWQMPQGGIDDGEELHPAALRELSEETGVAA 68
Query: 127 --AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
+AE+ YD P ++ KL WG Y+GQ QKW L +F G++ +I L D +
Sbjct: 69 ELVTIIAESREEHLYDLPDELIGKL---WGGQYRGQRQKWLLLRFAGEDTDIRL--DAHD 123
Query: 185 KPEFNEWRWMFPEQV 199
EF+EWRW+ PEQ+
Sbjct: 124 PAEFSEWRWVEPEQL 138
>sp|B3CM46|RPPH_WOLPP RNA pyrophosphohydrolase OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=rppH PE=3 SV=1
Length = 162
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128
YR VGI L N + IF R WQMPQGG DEGE+L AALREL EE G AE
Sbjct: 8 YRPCVGIMLFNK-QGNIFIGKRFDSDSYWQMPQGGVDEGEELEQAALRELLEEVGTDEAE 66
Query: 129 FLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEF 188
+A+ W+ Y+ P +V + W Y GQ Q+WFL KF GK+++IN+ + ++ PEF
Sbjct: 67 VVAQNKEWIYYNLPEEV---IPICWNGRYSGQKQRWFLMKFCGKDKDINI--NYTDHPEF 121
Query: 189 NEWRW 193
EWRW
Sbjct: 122 KEWRW 126
>sp|Q5FU29|RPPH_GLUOX RNA pyrophosphohydrolase OS=Gluconobacter oxydans (strain 621H)
GN=rppH PE=3 SV=1
Length = 170
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSA 127
YR NVGI L N K +F A R +P WQ PQGG DEGE AALRE+ EE G +A
Sbjct: 9 YRPNVGIALFNRDGK-LFIARRTDLPGDVWQCPQGGIDEGETPQVAALREMGEEIGTQNA 67
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
LAE WL+YD P + + + G ++GQ QKWF+ + G++ +I L D + PE
Sbjct: 68 RILAERSGWLSYDLPSDL---IGKALGGRFRGQTQKWFVMGYEGQDSDIRL--DLQDPPE 122
Query: 188 FNEWRWMFPEQVLER 202
F+ W W+ P+ VL R
Sbjct: 123 FDAWEWVDPQAVLNR 137
>sp|A8HRT0|RPPH_AZOC5 RNA pyrophosphohydrolase OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rppH PE=3 SV=1
Length = 168
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 89/166 (53%), Gaps = 27/166 (16%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIP------YTWQMPQGGADEGEDLINAALRELREET 122
YR VG+ + N + + +F R+ P ++WQMPQGG D+GE+ AALREL EET
Sbjct: 9 YRPCVGLAIFNRAGQ-VFLGQRLSGPEHVDATHSWQMPQGGIDKGEEPYEAALRELYEET 67
Query: 123 GVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLL--G 180
+ S L E WL+YD P +V + W Y+GQ QKWF +FTG E EI++L G
Sbjct: 68 SIRSVVKLGEVEDWLSYDLPGRVAGEA---WKGKYRGQTQKWFALRFTGDEGEIDILKPG 124
Query: 181 DGSEKPEFNEWRWM-----------FPEQVLERVRKPCGLIFRYFS 215
G+ K EF WRW F QV ERV + FR F+
Sbjct: 125 GGAHKAEFCNWRWDALDRAAELVIPFKRQVYERVARE----FRRFA 166
>sp|Q5LMH8|RPPH_RUEPO RNA pyrophosphohydrolase OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=rppH PE=3 SV=1
Length = 161
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 8/137 (5%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS-- 126
YR VG+ L+N WQMPQGG DE ED AALREL EETGVT+
Sbjct: 11 YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADL 70
Query: 127 AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
E +AET WL YD P + + R W Y+GQ QKW+LF+F G++++I+L + P
Sbjct: 71 VEMVAETDGWLPYDLPHDL---VPRIWKGRYRGQEQKWYLFRFLGRDDQIDL---ETGHP 124
Query: 187 EFNEWRWMFPEQVLERV 203
EF+ W+W P++++ +
Sbjct: 125 EFSRWKWQDPDRLVAEI 141
>sp|Q2N9Y3|RPPH_ERYLH RNA pyrophosphohydrolase OS=Erythrobacter litoralis (strain
HTCC2594) GN=rppH PE=3 SV=1
Length = 164
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 10/135 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPY--TWQMPQGGADEGEDLINAALRELREETGVTS 126
YR+ G+ L N + +FAA RI WQMPQGG D GE AA+REL EETGV++
Sbjct: 13 YRQCAGVMLANR-EGLVFAAQRIDSKNLGAWQMPQGGIDPGETQQEAAMRELEEETGVSA 71
Query: 127 --AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSE 184
A+ +A PY + YD P +++ KL WG Y+GQ Q WFL +FTG + +I++
Sbjct: 72 DLADVIARMPYPVRYDLPEELQGKL---WGGRYRGQEQHWFLARFTGTDADIDIA--AHN 126
Query: 185 KPEFNEWRWMFPEQV 199
PEF+EW+W+ P+++
Sbjct: 127 PPEFSEWKWVEPDEL 141
>sp|A1B502|RPPH_PARDP RNA pyrophosphohydrolase OS=Paracoccus denitrificans (strain Pd
1222) GN=rppH PE=3 SV=1
Length = 163
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 10/138 (7%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPY-TWQMPQGGADEGEDLINAALRELREETGVTS- 126
YR G+ LIN +FA RI P WQMPQGG D GE AALREL EETGVT
Sbjct: 13 YRPCAGVVLINPVGL-VFAGQRIDNPGPAWQMPQGGIDRGESPREAALRELVEETGVTPD 71
Query: 127 -AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEK 185
+ LAETP W+TYD P ++ L + W Y GQ QKWF +F G++ + + +E
Sbjct: 72 LVDVLAETPGWVTYDLPPEL---LGKVWKGRYGGQKQKWFAMRFLGEDSAVRI---ATEH 125
Query: 186 PEFNEWRWMFPEQVLERV 203
PEF W+WM +++ +
Sbjct: 126 PEFERWQWMRAADLIDGI 143
>sp|Q6G4Y4|RPPH_BARHE RNA pyrophosphohydrolase OS=Bartonella henselae (strain ATCC 49882
/ Houston 1) GN=rppH PE=3 SV=1
Length = 173
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 85/136 (62%), Gaps = 15/136 (11%)
Query: 69 YRRNVGICLINSSKKKIFAATR----IH----IPYTWQMPQGGADEGEDLINAALRELRE 120
YRR+VGI + N + K++ R IH I + WQ+PQGG DE E+ ++AA REL E
Sbjct: 12 YRRSVGILVFNH-EGKVWVGRRLMVCIHEDTKIYHRWQLPQGGIDENEEPLDAARRELYE 70
Query: 121 ETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGK--EEEINL 178
ETG+ S E + E YW YDFP ++ + G+ Y+GQ QKWF F+FTG+ E +IN
Sbjct: 71 ETGIRSIELIKEAKYWFHYDFPQEI---VGSVLGSKYRGQIQKWFAFQFTGELSEIKINP 127
Query: 179 LGDGSEKPEFNEWRWM 194
DG K EF++W+W+
Sbjct: 128 PPDG-HKAEFDQWKWV 142
>sp|B6JD11|RPPH_OLICO RNA pyrophosphohydrolase OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rppH PE=3 SV=1
Length = 166
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 69 YRRNVGICLINSSK-----KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123
YR VG+ L+N +++ I + WQMPQGG D GED AA REL EET
Sbjct: 9 YRSCVGMMLLNPKGLVFIGRRVGGTELIDPAHVWQMPQGGIDPGEDYWEAAQRELLEETN 68
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGS 183
S E LAE W TYD P + R W Y+GQ QKWF +FTG + EIN+
Sbjct: 69 ARSIEKLAEATDWFTYDIPRMIA---GRSWKGRYRGQRQKWFAIRFTGDDSEINVASPAG 125
Query: 184 EKPEFNEWRW 193
K EF +WRW
Sbjct: 126 HKAEFVDWRW 135
>sp|A9H3A6|RPPH_GLUDA RNA pyrophosphohydrolase OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rppH PE=3 SV=1
Length = 167
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT--------WQMPQGGADEGEDLINAALRELRE 120
YRRNVG L N+ + +I R P WQ PQGG D ED A LRELRE
Sbjct: 9 YRRNVGAMLFNA-QGRILIGRRTDQPGAGGPLDGGVWQCPQGGIDADEDPEEAVLRELRE 67
Query: 121 ETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG 180
E G A + P WLTYD P + + R G Y+GQ QKWF +FTG++ +I L
Sbjct: 68 EIGTDRAVIMGARPDWLTYDLPAAL---IGRALGGRYRGQTQKWFALRFTGQDSDIRL-- 122
Query: 181 DGSEKPEFNEWRWM----FPEQVLERVRKPCGLIFRYFSPFC 218
D + PEF+ W+W+ PE+ + R + R F+ F
Sbjct: 123 DDQQPPEFDAWQWIDLPSLPERNVGFKRDIYRTLVRDFARFS 164
>sp|Q4FP40|RPPH_PELUB RNA pyrophosphohydrolase OS=Pelagibacter ubique (strain HTCC1062)
GN=rppH PE=3 SV=1
Length = 158
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 80/135 (59%), Gaps = 8/135 (5%)
Query: 70 RRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSAE 128
R VGI ++N K +F A RI WQMPQGG D+GED + AA REL EET + + E
Sbjct: 11 RNGVGIVVLNKDNK-VFVAKRIDNQKNFWQMPQGGVDKGEDYLTAAYRELEEETSIKNVE 69
Query: 129 FLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEF 188
+ E ++Y+ P K L W Y+GQ QKWF+ +F G++ EI++ ++ PEF
Sbjct: 70 LIKECDGLISYELP---KNLLGIIWKGKYRGQEQKWFIMRFLGQDNEIDI---KTKHPEF 123
Query: 189 NEWRWMFPEQVLERV 203
+EW+W+ E + + V
Sbjct: 124 SEWKWIDLENITDLV 138
>sp|Q5GT39|RPPH_WOLTR RNA pyrophosphohydrolase OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rppH PE=3 SV=1
Length = 161
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
D YR VGI L N + +F R WQMPQGG D+GE L AALREL EE G
Sbjct: 6 DKYRPCVGIMLFNK-QGHVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDK 64
Query: 127 AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
A+ +A+ W+ Y+ P +V + W Y GQ Q+WFL KF G+ ++IN+ + ++ P
Sbjct: 65 AKIIAKNKDWIYYNLPEEV---IPTCWNGRYSGQKQRWFLMKFYGEGKDINI--NYTDHP 119
Query: 187 EFNEWRW 193
EF EWRW
Sbjct: 120 EFKEWRW 126
>sp|Q92IV0|RPPH_RICCN RNA pyrophosphohydrolase OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rppH PE=3 SV=1
Length = 161
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 8/136 (5%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N++ IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRPGVGMMILNANNH-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ +W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKFWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDINI---NTSNPE 125
Query: 188 FNEWRWMFPEQVLERV 203
F++WRW +++L +
Sbjct: 126 FDQWRWASLDELLSII 141
>sp|Q21CZ3|RPPH_RHOPB RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
BisB18) GN=rppH PE=3 SV=1
Length = 175
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 71/131 (54%), Gaps = 9/131 (6%)
Query: 69 YRRNVGICLINSSK-----KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123
YR VG+ L+N+ +++ + + WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGMMLLNAEGLVFIGRRLGGIEHVDETHVWQMPQGGVDPGEDPWTAAKRELYEETS 68
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG-DG 182
V S E L E WL YD P V R W Y+GQ QKW+ +FTG + EI+++ G
Sbjct: 69 VRSVEKLGEIADWLIYDIPRTVA---GRSWKGRYRGQRQKWYAVRFTGDDSEIDVVSPGG 125
Query: 183 SEKPEFNEWRW 193
K EF WRW
Sbjct: 126 GHKAEFISWRW 136
>sp|C3PMT3|RPPH_RICAE RNA pyrophosphohydrolase OS=Rickettsia africae (strain ESF-5)
GN=rppH PE=3 SV=1
Length = 161
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 8/133 (6%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRPGVGMMILNADNH-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ +W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKFWYSYDVPSFLIPKL---WNGNFRGQQQRWFLIRFTGNNEDINI---NTSNPE 125
Query: 188 FNEWRWMFPEQVL 200
F++WRW +++L
Sbjct: 126 FDQWRWASLDELL 138
>sp|C4K0V5|RPPH_RICPU RNA pyrophosphohydrolase OS=Rickettsia peacockii (strain Rustic)
GN=rppH PE=3 SV=1
Length = 161
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 8/133 (6%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRPGVGMMILNADNH-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ +W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKFWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDINI---NTSNPE 125
Query: 188 FNEWRWMFPEQVL 200
F++WRW +++L
Sbjct: 126 FDQWRWASLDELL 138
>sp|Q1RHV9|RPPH_RICBR RNA pyrophosphohydrolase OS=Rickettsia bellii (strain RML369-C)
GN=rppH PE=3 SV=1
Length = 161
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 8/133 (6%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ K IF RI + WQMPQGG GE AA+RE+ EE G +
Sbjct: 13 YRPGVGMMILNADNK-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSSKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKCWYSYDVPSFLIPKL---WDGNFRGQKQRWFLIRFTGTNEDINI---NTLNPE 125
Query: 188 FNEWRWMFPEQVL 200
F+EWRW +++L
Sbjct: 126 FDEWRWASLDELL 138
>sp|A8GW83|RPPH_RICB8 RNA pyrophosphohydrolase OS=Rickettsia bellii (strain OSU 85-389)
GN=rppH PE=3 SV=1
Length = 161
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 8/133 (6%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ K IF RI + WQMPQGG GE AA+RE+ EE G +
Sbjct: 13 YRPGVGMMILNADNK-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSSKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKCWYSYDVPSFLIPKL---WDGNFRGQKQRWFLIRFTGTNEDINI---NTLNPE 125
Query: 188 FNEWRWMFPEQVL 200
F+EWRW +++L
Sbjct: 126 FDEWRWASLDELL 138
>sp|A8GMN4|RPPH_RICAH RNA pyrophosphohydrolase OS=Rickettsia akari (strain Hartford)
GN=rppH PE=3 SV=1
Length = 161
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 8/133 (6%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRLGVGMMILNADNH-IFVGKRIDTKLSAWQMPQGGIVPGETPSIAAMREMLEEIGSDKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKCWYSYDVPSLLIPKL---WNGNFRGQKQRWFLIRFTGNNEDINI---NTSNPE 125
Query: 188 FNEWRWMFPEQVL 200
F++WRW +++L
Sbjct: 126 FDQWRWASLDELL 138
>sp|P61787|RPPH_WOLPM RNA pyrophosphohydrolase OS=Wolbachia pipientis wMel GN=rppH PE=3
SV=1
Length = 162
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 72/127 (56%), Gaps = 6/127 (4%)
Query: 67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
D YR VGI L N + F R WQMPQGG D+GE+L AALREL EE G
Sbjct: 6 DKYRPCVGIMLFNR-QGHAFIGKRFESDSYWQMPQGGVDDGEELEQAALRELLEEVGTNK 64
Query: 127 AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
+ + ++ W+ Y+ P +V + W Y GQ Q+WFL KF G++E+I++ G P
Sbjct: 65 VKVITKSKDWIYYNLPEEV---IPICWNGKYSGQKQRWFLMKFCGEDEDIDINYTGH--P 119
Query: 187 EFNEWRW 193
EF EWRW
Sbjct: 120 EFKEWRW 126
>sp|C0R4X8|RPPH_WOLWR RNA pyrophosphohydrolase OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=rppH PE=3 SV=1
Length = 162
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 72/127 (56%), Gaps = 6/127 (4%)
Query: 67 DGYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126
D YR VGI L N + F R WQMPQGG D+GE+L AALREL EE G
Sbjct: 6 DKYRPCVGIMLFNR-QGHAFIGKRFDSDSYWQMPQGGVDDGEELEQAALRELLEEVGTNK 64
Query: 127 AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKP 186
+ + ++ W+ Y+ P +V + W Y GQ Q+WFL KF G++E+I++ G P
Sbjct: 65 VKVITKSKDWIYYNLPEEV---IPICWNGKYSGQKQRWFLMKFCGEDEDIDINYTGH--P 119
Query: 187 EFNEWRW 193
EF EWRW
Sbjct: 120 EFKEWRW 126
>sp|A8GRA7|RPPH_RICRS RNA pyrophosphohydrolase OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rppH PE=3 SV=1
Length = 161
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRPGVGMMILNADNH-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDINI---NTSNPE 125
Query: 188 FNEWRWMFPEQVLERV 203
F++WRW +++L +
Sbjct: 126 FDQWRWASLDELLSII 141
>sp|B0BWQ7|RPPH_RICRO RNA pyrophosphohydrolase OS=Rickettsia rickettsii (strain Iowa)
GN=rppH PE=3 SV=1
Length = 161
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRPGVGMMILNADNH-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDINI---NTSNPE 125
Query: 188 FNEWRWMFPEQVLERV 203
F++WRW +++L +
Sbjct: 126 FDQWRWASLDELLSII 141
>sp|Q92LA8|RPPH_RHIME RNA pyrophosphohydrolase OS=Rhizobium meliloti (strain 1021)
GN=rppH PE=3 SV=1
Length = 167
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHI--------PYTWQMPQGGADEGEDLINAALRELRE 120
YR VG+ ++N + ++A R+ + P WQMPQGG DEGED + AA REL E
Sbjct: 8 YRPCVGVMVLNR-QGLVWAGHRLAVGNSEYDGSPQLWQMPQGGIDEGEDPLEAACRELYE 66
Query: 121 ETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINL-L 179
ETG+ S LAE P W+ YD P + + Y+GQ Q+W+ F+F G E EI +
Sbjct: 67 ETGIRSVSLLAEAPDWIHYDLPSHL---IGIGLKGKYRGQRQRWYAFRFEGDESEIAINP 123
Query: 180 GDGSEKPEFNEWRW 193
G +PEF+ W W
Sbjct: 124 PPGGHEPEFDAWEW 137
>sp|Q4UKM5|RPPH_RICFE RNA pyrophosphohydrolase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rppH PE=3 SV=1
Length = 161
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 8/133 (6%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRPGVGMMILNADNH-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDINI---NTSNPE 125
Query: 188 FNEWRWMFPEQVL 200
F++WRW +++L
Sbjct: 126 FDQWRWASLDELL 138
>sp|A8EXY5|RPPH_RICCK RNA pyrophosphohydrolase OS=Rickettsia canadensis (strain McKiel)
GN=rppH PE=3 SV=1
Length = 161
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRPGVGMMILNADNH-IFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +YD P + KL W N++GQ Q+WFL +FTG E+IN+ + PE
Sbjct: 72 YIIAESKCWYSYDLPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNEDINI---NTSNPE 125
Query: 188 FNEWRWMFPEQVLERV 203
F++WRW ++L +
Sbjct: 126 FDQWRWASLNELLSII 141
>sp|Q07V02|RPPH_RHOP5 RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
BisA53) GN=rppH PE=3 SV=1
Length = 176
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 69 YRRNVGICLINSSK-----KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123
YR VG+ L+N+ ++ + + WQMPQGG D GED AA REL EET
Sbjct: 9 YRTCVGMMLLNAEGLVFIGRRSGGIEHVDDSHVWQMPQGGVDPGEDTWAAAKRELYEETS 68
Query: 124 VTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLG-DG 182
V S E L E WL YD P V R W Y+GQ QKW+ +FTG + EI++ G
Sbjct: 69 VQSVEKLGEISDWLIYDIPRTVA---GRAWKGRYRGQRQKWYAVRFTGLDSEIDVTTPGG 125
Query: 183 SEKPEFNEWRW 193
K EF WRW
Sbjct: 126 GHKAEFISWRW 136
>sp|Q9ZDT9|RPPH_RICPR RNA pyrophosphohydrolase OS=Rickettsia prowazekii (strain Madrid E)
GN=rppH PE=1 SV=1
Length = 161
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 8/133 (6%)
Query: 69 YRRNVGICLINSSKKKIFAATRIHIPYT-WQMPQGGADEGEDLINAALRELREETGVTSA 127
YR VG+ ++N+ + IF RI + WQMPQGG GE AA+RE+ EE G
Sbjct: 13 YRPGVGMMILNADNQ-IFVGKRIDTKISSWQMPQGGIVPGETPSIAAMREMLEEIGSNKG 71
Query: 128 EFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPE 187
+AE+ W +YD P + KL W N++GQ Q+WFL +FTG ++IN+ + PE
Sbjct: 72 YIIAESKCWYSYDVPSFLIPKL---WNGNFRGQKQRWFLIRFTGNNKDINI---HTSNPE 125
Query: 188 FNEWRWMFPEQVL 200
F++WRW +++L
Sbjct: 126 FDQWRWTSLDELL 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,961,347
Number of Sequences: 539616
Number of extensions: 3921504
Number of successful extensions: 9211
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 7999
Number of HSP's gapped (non-prelim): 461
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)