Query 026407
Match_columns 239
No_of_seqs 233 out of 1730
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03671 Ap4A_hydrolase_plant_l 99.9 1.3E-21 2.8E-26 154.1 15.9 129 69-203 2-132 (147)
2 PRK00714 RNA pyrophosphohydrol 99.9 1E-20 2.3E-25 150.5 17.1 143 68-217 6-154 (156)
3 PRK09438 nudB dihydroneopterin 99.8 4.5E-19 9.7E-24 139.6 15.1 133 69-214 6-142 (148)
4 PF00293 NUDIX: NUDIX domain; 99.8 4.4E-18 9.5E-23 130.4 13.4 121 69-208 1-125 (134)
5 cd04679 Nudix_Hydrolase_20 Mem 99.8 3.7E-18 8.1E-23 130.4 11.7 57 70-127 2-60 (125)
6 cd03673 Ap6A_hydrolase Diadeno 99.8 7.7E-18 1.7E-22 129.0 13.4 123 71-212 2-127 (131)
7 cd03672 Dcp2p mRNA decapping e 99.8 5.4E-18 1.2E-22 133.3 12.8 111 71-203 2-112 (145)
8 cd03430 GDPMH GDP-mannose glyc 99.8 6E-18 1.3E-22 132.8 12.9 57 70-127 12-70 (144)
9 cd04696 Nudix_Hydrolase_37 Mem 99.8 5E-18 1.1E-22 129.7 11.9 56 71-127 3-58 (125)
10 cd04670 Nudix_Hydrolase_12 Mem 99.8 9.4E-18 2E-22 128.5 12.7 112 70-203 2-114 (127)
11 cd04700 DR1025_like DR1025 fro 99.8 8.9E-18 1.9E-22 131.5 12.6 116 69-206 12-129 (142)
12 PRK15434 GDP-mannose mannosyl 99.8 1.4E-17 3.1E-22 132.6 13.9 55 71-126 18-74 (159)
13 PLN02325 nudix hydrolase 99.8 1.8E-17 3.9E-22 130.1 14.1 115 69-203 8-126 (144)
14 cd04681 Nudix_Hydrolase_22 Mem 99.8 6E-18 1.3E-22 129.9 11.1 109 72-200 3-113 (130)
15 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 1.5E-17 3.3E-22 128.9 13.1 112 70-203 2-116 (137)
16 cd04684 Nudix_Hydrolase_25 Con 99.8 2E-17 4.4E-22 126.2 12.7 120 72-208 2-123 (128)
17 PRK15472 nucleoside triphospha 99.7 3.5E-17 7.6E-22 127.7 13.4 55 71-126 4-62 (141)
18 PRK00241 nudC NADH pyrophospha 99.7 2E-17 4.4E-22 141.3 12.8 109 71-206 133-242 (256)
19 cd04669 Nudix_Hydrolase_11 Mem 99.7 2.3E-17 5E-22 125.6 11.5 111 72-203 2-115 (121)
20 cd04680 Nudix_Hydrolase_21 Mem 99.7 2.3E-17 4.9E-22 124.7 11.0 107 72-203 2-109 (120)
21 cd03675 Nudix_Hydrolase_2 Cont 99.7 6.4E-17 1.4E-21 124.9 13.1 126 73-220 3-130 (134)
22 cd04678 Nudix_Hydrolase_19 Mem 99.7 3.9E-17 8.4E-22 125.3 11.5 114 70-202 2-117 (129)
23 cd04682 Nudix_Hydrolase_23 Mem 99.7 4.6E-17 1E-21 123.9 11.5 107 73-203 4-115 (122)
24 cd04664 Nudix_Hydrolase_7 Memb 99.7 9.8E-17 2.1E-21 123.1 13.1 116 71-206 2-122 (129)
25 cd04692 Nudix_Hydrolase_33 Mem 99.7 5.2E-17 1.1E-21 127.3 11.7 117 69-203 1-128 (144)
26 cd03674 Nudix_Hydrolase_1 Memb 99.7 2E-16 4.3E-21 123.2 14.7 58 70-128 2-59 (138)
27 cd04673 Nudix_Hydrolase_15 Mem 99.7 9.4E-17 2E-21 121.5 12.4 54 72-127 2-57 (122)
28 cd03428 Ap4A_hydrolase_human_l 99.7 1.1E-16 2.4E-21 122.7 12.9 115 71-206 3-119 (130)
29 cd04677 Nudix_Hydrolase_18 Mem 99.7 6.8E-17 1.5E-21 124.2 11.7 58 69-128 6-63 (132)
30 cd04697 Nudix_Hydrolase_38 Mem 99.7 7.5E-17 1.6E-21 123.6 11.3 108 72-204 2-114 (126)
31 cd04687 Nudix_Hydrolase_28 Mem 99.7 1.2E-16 2.7E-21 122.5 12.0 56 70-127 1-57 (128)
32 cd04671 Nudix_Hydrolase_13 Mem 99.7 1.3E-16 2.7E-21 122.0 11.7 55 72-127 2-58 (123)
33 cd04693 Nudix_Hydrolase_34 Mem 99.7 1E-16 2.2E-21 122.8 11.3 108 72-205 2-116 (127)
34 cd04695 Nudix_Hydrolase_36 Mem 99.7 2.8E-16 6E-21 121.2 13.6 107 79-206 11-118 (131)
35 cd04661 MRP_L46 Mitochondrial 99.7 2.2E-16 4.7E-21 122.1 12.9 112 82-208 12-126 (132)
36 cd04691 Nudix_Hydrolase_32 Mem 99.7 1.2E-16 2.7E-21 120.9 11.3 103 73-203 3-109 (117)
37 cd04688 Nudix_Hydrolase_29 Mem 99.7 1.5E-16 3.3E-21 121.6 11.8 117 72-203 3-119 (126)
38 cd03426 CoAse Coenzyme A pyrop 99.7 9.9E-17 2.1E-21 127.7 10.9 110 71-202 3-118 (157)
39 cd03429 NADH_pyrophosphatase N 99.7 7.6E-17 1.7E-21 124.5 9.9 105 72-202 2-107 (131)
40 cd02885 IPP_Isomerase Isopente 99.7 2.1E-16 4.5E-21 126.8 12.7 117 69-204 29-150 (165)
41 cd04676 Nudix_Hydrolase_17 Mem 99.7 2.3E-16 4.9E-21 120.1 12.0 56 70-127 2-57 (129)
42 cd03427 MTH1 MutT homolog-1 (M 99.7 2.8E-16 6.2E-21 121.6 12.3 108 72-203 3-112 (137)
43 cd04683 Nudix_Hydrolase_24 Mem 99.7 2.2E-16 4.8E-21 119.5 11.5 54 72-127 2-58 (120)
44 cd04666 Nudix_Hydrolase_9 Memb 99.7 4.5E-16 9.7E-21 118.8 12.7 114 72-205 2-118 (122)
45 PRK03759 isopentenyl-diphospha 99.7 6.8E-16 1.5E-20 126.0 14.3 118 67-203 31-153 (184)
46 PRK15393 NUDIX hydrolase YfcD; 99.7 4E-16 8.7E-21 126.9 12.2 125 69-219 36-166 (180)
47 PRK10546 pyrimidine (deoxy)nuc 99.7 6.3E-16 1.4E-20 119.4 12.3 54 73-127 6-62 (135)
48 cd04694 Nudix_Hydrolase_35 Mem 99.7 1E-15 2.2E-20 120.0 13.5 55 72-127 3-61 (143)
49 cd04686 Nudix_Hydrolase_27 Mem 99.7 6.5E-16 1.4E-20 119.2 11.8 52 72-126 2-53 (131)
50 cd04689 Nudix_Hydrolase_30 Mem 99.7 9.1E-16 2E-20 117.1 12.2 54 71-127 2-55 (125)
51 PRK10776 nucleoside triphospha 99.7 1.2E-15 2.6E-20 116.3 12.6 55 72-127 6-63 (129)
52 cd04667 Nudix_Hydrolase_10 Mem 99.7 7.1E-16 1.5E-20 115.6 10.9 101 74-205 4-104 (112)
53 cd04690 Nudix_Hydrolase_31 Mem 99.7 1E-15 2.2E-20 115.4 11.8 54 73-128 3-56 (118)
54 KOG3084 NADH pyrophosphatase I 99.7 1.3E-16 2.7E-21 136.0 7.5 146 20-203 152-299 (345)
55 cd04699 Nudix_Hydrolase_39 Mem 99.7 1E-15 2.2E-20 116.8 11.3 56 72-128 3-62 (129)
56 cd04672 Nudix_Hydrolase_14 Mem 99.7 1.1E-15 2.4E-20 116.4 11.4 53 71-126 3-55 (123)
57 PRK11762 nudE adenosine nucleo 99.7 3.4E-15 7.3E-20 122.0 14.8 110 72-204 49-161 (185)
58 cd04685 Nudix_Hydrolase_26 Mem 99.7 1.1E-15 2.4E-20 118.3 11.3 114 72-202 2-123 (133)
59 TIGR00052 nudix-type nucleosid 99.7 9.9E-16 2.1E-20 125.0 11.1 117 71-206 45-169 (185)
60 COG2816 NPY1 NTP pyrophosphohy 99.7 4.2E-16 9.2E-21 132.2 9.2 138 20-203 113-251 (279)
61 COG1051 ADP-ribose pyrophospha 99.7 1.5E-15 3.2E-20 119.3 11.6 111 71-203 11-123 (145)
62 cd04511 Nudix_Hydrolase_4 Memb 99.7 1.9E-15 4E-20 116.4 11.9 103 70-200 13-117 (130)
63 PRK10729 nudF ADP-ribose pyrop 99.6 2.4E-15 5.2E-20 124.4 12.8 117 71-205 50-174 (202)
64 TIGR02150 IPP_isom_1 isopenten 99.6 3.2E-15 6.8E-20 119.1 12.8 114 67-204 24-144 (158)
65 TIGR00586 mutt mutator mutT pr 99.6 3.8E-15 8.2E-20 113.7 12.1 55 71-126 5-62 (128)
66 PRK05379 bifunctional nicotina 99.6 1.3E-14 2.9E-19 129.0 14.4 114 72-202 205-322 (340)
67 cd03425 MutT_pyrophosphohydrol 99.6 1.4E-14 3.1E-19 109.1 11.3 105 73-203 4-111 (124)
68 KOG2839 Diadenosine and diphos 99.6 3.7E-14 8.1E-19 108.5 11.6 134 66-217 5-141 (145)
69 cd03676 Nudix_hydrolase_3 Memb 99.6 4.4E-14 9.6E-19 114.8 12.8 123 67-205 29-161 (180)
70 PRK15009 GDP-mannose pyrophosp 99.6 6.3E-14 1.4E-18 114.9 13.3 116 71-206 46-170 (191)
71 cd02883 Nudix_Hydrolase Nudix 99.6 5.4E-14 1.2E-18 105.2 11.4 111 72-203 2-113 (123)
72 PRK10707 putative NUDIX hydrol 99.5 8.8E-14 1.9E-18 114.0 12.4 113 69-203 29-147 (190)
73 cd04662 Nudix_Hydrolase_5 Memb 99.5 4.8E-14 1E-18 107.6 9.7 56 72-127 2-65 (126)
74 PRK08999 hypothetical protein; 99.5 4.3E-13 9.4E-18 117.9 12.4 119 70-214 5-127 (312)
75 cd04665 Nudix_Hydrolase_8 Memb 99.5 4.9E-13 1.1E-17 101.4 10.7 55 72-130 2-56 (118)
76 PLN02709 nudix hydrolase 99.5 6.8E-13 1.5E-17 110.3 12.0 108 72-202 35-155 (222)
77 TIGR02705 nudix_YtkD nucleosid 99.5 2.1E-12 4.5E-17 102.3 13.5 58 71-132 25-82 (156)
78 cd04663 Nudix_Hydrolase_6 Memb 99.4 1.6E-12 3.4E-17 99.4 11.4 52 73-126 3-55 (126)
79 cd04674 Nudix_Hydrolase_16 Mem 99.4 2.2E-12 4.7E-17 97.8 12.0 54 72-127 6-61 (118)
80 PLN02552 isopentenyl-diphospha 99.4 9.4E-12 2E-16 105.5 12.5 61 66-127 52-134 (247)
81 PLN03143 nudix hydrolase; Prov 99.4 1.4E-11 3.1E-16 106.6 13.6 121 72-205 130-268 (291)
82 KOG3041 Nucleoside diphosphate 99.3 4.2E-11 9.2E-16 96.0 13.9 116 71-203 74-195 (225)
83 COG0494 MutT NTP pyrophosphohy 99.3 1.9E-11 4.1E-16 93.8 10.8 56 72-127 13-69 (161)
84 cd03670 ADPRase_NUDT9 ADP-ribo 99.3 2.2E-11 4.8E-16 99.0 11.4 42 84-126 50-91 (186)
85 PLN02791 Nudix hydrolase homol 99.3 3.7E-11 7.9E-16 115.6 13.7 121 67-203 29-159 (770)
86 cd03431 DNA_Glycosylase_C DNA 99.1 5.8E-09 1.3E-13 77.9 12.8 50 74-124 6-58 (118)
87 KOG3069 Peroxisomal NUDIX hydr 99.0 3.1E-09 6.7E-14 87.8 10.0 56 72-127 45-107 (246)
88 KOG0648 Predicted NUDIX hydrol 98.9 2.9E-09 6.3E-14 91.2 5.4 115 68-203 113-232 (295)
89 COG4119 Predicted NTP pyrophos 98.8 3.5E-08 7.5E-13 74.0 10.0 124 71-213 4-150 (161)
90 COG1443 Idi Isopentenyldiphosp 98.8 1.2E-08 2.6E-13 80.7 7.0 118 69-205 32-156 (185)
91 PLN02839 nudix hydrolase 98.5 1.4E-06 3.1E-11 77.2 11.0 103 83-203 218-328 (372)
92 PF14815 NUDIX_4: NUDIX domain 98.3 3E-06 6.6E-11 63.4 6.8 100 75-203 2-104 (114)
93 PRK10880 adenine DNA glycosyla 97.9 0.00012 2.6E-09 65.4 10.8 79 40-126 197-281 (350)
94 KOG2937 Decapping enzyme compl 97.8 4.7E-06 1E-10 72.2 0.3 107 72-200 84-190 (348)
95 KOG0142 Isopentenyl pyrophosph 97.8 4.2E-05 9E-10 62.0 5.1 121 68-204 50-185 (225)
96 KOG4432 Uncharacterized NUDIX 97.6 0.00033 7.3E-09 60.1 8.9 121 68-205 227-379 (405)
97 COG4112 Predicted phosphoester 97.5 0.0014 3.1E-08 51.5 10.1 114 69-201 59-186 (203)
98 KOG4195 Transient receptor pot 97.4 0.00017 3.7E-09 59.4 4.0 39 84-123 140-178 (275)
99 PRK13910 DNA glycosylase MutY; 97.2 0.0035 7.5E-08 54.7 9.9 60 41-102 156-218 (289)
100 TIGR01084 mutY A/G-specific ad 96.7 0.0062 1.3E-07 52.8 7.2 62 40-102 193-261 (275)
101 PF13869 NUDIX_2: Nucleotide h 96.4 0.016 3.4E-07 47.1 7.3 58 67-126 40-99 (188)
102 COG1194 MutY A/G-specific DNA 96.1 0.0097 2.1E-07 52.7 5.3 66 40-106 202-273 (342)
103 KOG4432 Uncharacterized NUDIX 95.6 0.029 6.2E-07 48.5 5.8 56 71-126 27-110 (405)
104 KOG4548 Mitochondrial ribosoma 95.6 0.099 2.1E-06 44.2 8.8 43 84-126 140-184 (263)
105 KOG1689 mRNA cleavage factor I 94.1 0.13 2.9E-06 40.8 5.5 58 66-125 65-124 (221)
106 KOG4313 Thiamine pyrophosphoki 94.1 0.26 5.7E-06 41.6 7.4 103 84-203 149-259 (306)
107 PF03487 IL13: Interleukin-13; 68.6 5.1 0.00011 24.0 2.1 22 101-122 15-36 (43)
108 PF14443 DBC1: DBC1 66.2 9.6 0.00021 29.0 3.8 33 94-126 23-58 (126)
109 PF07026 DUF1317: Protein of u 64.0 25 0.00055 22.9 4.8 15 95-109 22-36 (60)
110 KOG2937 Decapping enzyme compl 37.8 12 0.00025 33.3 0.2 43 84-126 253-295 (348)
111 PF14044 NETI: NETI protein 36.9 31 0.00068 22.4 2.0 22 103-126 3-24 (57)
112 PF09505 Dimeth_Pyl: Dimethyla 30.3 31 0.00067 30.7 1.6 25 102-126 407-431 (466)
113 PF08290 Hep_core_N: Hepatitis 25.5 45 0.00098 18.1 1.1 10 228-237 2-11 (27)
114 PF12860 PAS_7: PAS fold 25.5 40 0.00086 24.2 1.3 42 72-116 5-47 (115)
115 COG3357 Predicted transcriptio 24.0 54 0.0012 23.5 1.6 22 14-35 54-75 (97)
116 PF03119 DNA_ligase_ZBD: NAD-d 23.8 25 0.00054 19.3 -0.1 26 20-45 1-26 (28)
117 COG0828 RpsU Ribosomal protein 21.1 83 0.0018 21.2 2.0 27 99-125 1-29 (67)
No 1
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.88 E-value=1.3e-21 Score=154.06 Aligned_cols=129 Identities=53% Similarity=1.035 Sum_probs=96.3
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc--ceeeeccCceeeecCchhhh
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS--AEFLAETPYWLTYDFPLKVK 146 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~ 146 (239)
+|.+|++++++.++ ++||++|...++.|.+|||++|+||++.+||.||++||||+++ ..++.....+++|.+++...
T Consensus 2 ~~~~v~~ii~~~~~-~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~ 80 (147)
T cd03671 2 YRPNVGVVLFNEDG-KVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELK 80 (147)
T ss_pred CCceEEEEEEeCCC-EEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhh
Confidence 56789999999887 9999999876689999999999999999999999999999996 34445444556666654321
Q ss_pred hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
. ..+.+.+.++..++|++.+......+.... .+++|+.+++|++++++.++.
T Consensus 81 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~E~~~~~W~~~~el~~~~ 132 (147)
T cd03671 81 L---KIWGGRYRGQEQKWFLFRFTGDDSEIDLNA--PEHPEFDEWRWVPLEELPDLI 132 (147)
T ss_pred c---cccCCcCCCEEEEEEEEEecCCCccccCCC--CCCCCEeeEEeCCHHHHHHhc
Confidence 1 222223456677888888876433333321 135689999999999999987
No 2
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.87 E-value=1e-20 Score=150.45 Aligned_cols=143 Identities=43% Similarity=0.781 Sum_probs=104.9
Q ss_pred CceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecCchhh
Q 026407 68 GYRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLKV 145 (239)
Q Consensus 68 ~~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~~~~~ 145 (239)
.++.+|++++++.++ ++||++|...++.|.+|||++++||++++||.||++||||+++. .+......+..|.++...
T Consensus 6 ~~~~~v~~~i~~~~g-~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~ 84 (156)
T PRK00714 6 GYRPNVGIILLNRQG-QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRL 84 (156)
T ss_pred CCCCeEEEEEEecCC-EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHH
Confidence 588899999999988 99999997656999999999999999999999999999999874 334444455666666532
Q ss_pred hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh---cchHH-HHHHHhhhh
Q 026407 146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV---RKPCG-LIFRYFSPF 217 (239)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~---~~~~~-~~~~~l~~~ 217 (239)
... ....+.++..++|++........+..+ ..+++|+.+++|++++++.+++ ++.++ ++++.|...
T Consensus 85 ~~~----~~~~~~~~~~~~fl~~~~~~~~~~~l~--~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~~~~ 154 (156)
T PRK00714 85 VRR----SKGVYRGQKQKWFLLRLTGDDSEINLN--TTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARL 154 (156)
T ss_pred hhc----cCCcccCcEEEEEEEEecCCCccccCC--CCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 111 133456667888888886543333332 2245699999999999999875 45555 666655443
No 3
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.82 E-value=4.5e-19 Score=139.55 Aligned_cols=133 Identities=17% Similarity=0.305 Sum_probs=84.8
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc--ceeeecc-CceeeecCchhh
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS--AEFLAET-PYWLTYDFPLKV 145 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~-~~~~~~~~~~~~ 145 (239)
++.+|++++++.++ ++||++|...++.|++|||++|.|||+++||+||++||||+++ ..+.... .....+.+...
T Consensus 6 ~~~~v~~vi~~~~~-~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~- 83 (148)
T PRK09438 6 RPVSVLVVIYTPDL-GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPH- 83 (148)
T ss_pred CceEEEEEEEeCCC-eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchh-
Confidence 45688889998887 8999888766689999999999999999999999999999987 3322110 00011111000
Q ss_pred hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407 146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF 214 (239)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l 214 (239)
....+.........++|.+..... . . ...+|+.+++|++++++.++...+.. .++..+
T Consensus 84 ---~~~~~~~~~~~~~~~~f~~~~~~~-~--~-----~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~ 142 (148)
T PRK09438 84 ---WRHRYAPGVTRNTEHWFCLALPHE-R--P-----VVLTEHLAYQWLDAREAAALTKSWSNAEAIEQL 142 (148)
T ss_pred ---hhhccccccCCceeEEEEEecCCC-C--c-----cccCcccceeeCCHHHHHHHhcChhHHHHHHHH
Confidence 000011111233455666554321 1 1 11238899999999999998765655 555443
No 4
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.78 E-value=4.4e-18 Score=130.38 Aligned_cols=121 Identities=29% Similarity=0.506 Sum_probs=85.3
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCCC----CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHIP----YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK 144 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~~----~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 144 (239)
+|.+|++++++.++ ++||++|...+ +.|.+|||++++|||+.+||+||+.||||+++....... ...+..+..
T Consensus 1 ~~~~v~~ii~~~~~-~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~--~~~~~~~~~ 77 (134)
T PF00293_consen 1 WRRAVGVIIFNEDG-KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLG--LFSYPSPSG 77 (134)
T ss_dssp EEEEEEEEEEETTT-EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEE--EEEEEETTT
T ss_pred CCCEEEEEEEeCCc-EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccce--eeeecccCC
Confidence 46789999999998 99999998764 899999999999999999999999999999973222111 112221110
Q ss_pred hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH
Q 026407 145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG 208 (239)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~ 208 (239)
. ..+....+|.+............ ..|+.+++|++++++.++...+..
T Consensus 78 ~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~e~~~~~W~~~~el~~~~~~~~~ 125 (134)
T PF00293_consen 78 D-----------PEGEIVIFFIAELPSEQSEIQPQ-----DEEISEVKWVPPDELLELLLNGRI 125 (134)
T ss_dssp E-----------SSEEEEEEEEEEEEEEESECHTT-----TTTEEEEEEEEHHHHHHHHHTTHH
T ss_pred C-----------cccEEEEEEEEEEeCCccccCCC-----CccEEEEEEEEHHHhhhchhCcch
Confidence 0 01234556666655543333332 228999999999999998755533
No 5
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.7e-18 Score=130.37 Aligned_cols=57 Identities=28% Similarity=0.514 Sum_probs=50.6
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
|..|+++|++.++ ++||++|... +|.|.+|||++|+|||+++||+||++||||+++.
T Consensus 2 ~~~~~~~i~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~ 60 (125)
T cd04679 2 RVGCGAAILRDDG-KLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIH 60 (125)
T ss_pred ceEEEEEEECCCC-EEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcc
Confidence 5678888998877 9999988643 3899999999999999999999999999999874
No 6
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.77 E-value=7.7e-18 Score=129.01 Aligned_cols=123 Identities=24% Similarity=0.425 Sum_probs=80.2
Q ss_pred eeEEEEEEeCCC--CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407 71 RNVGICLINSSK--KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK 148 (239)
Q Consensus 71 ~~v~v~i~~~~~--~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (239)
.++++++++.++ .+|||++|... +.|.||||++++|||+++||.||++||||+++..+..... ..+.++..
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~--~~~~~~~~---- 74 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGT--IRYWFSSS---- 74 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEE--EEEeccCC----
Confidence 466777776641 38999998764 8999999999999999999999999999998743321111 12222210
Q ss_pred cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHH
Q 026407 149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFR 212 (239)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~ 212 (239)
.........+|.+...... ... ..++|+.++.|++++++.++...+.. .++.
T Consensus 75 ------~~~~~~~~~~~~~~~~~~~--~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~ 127 (131)
T cd03673 75 ------GKRVHKTVHWWLMRALGGE--FTP----QPDEEVDEVRWLPPDEARDRLSYPNDRELLR 127 (131)
T ss_pred ------CCCcceEEEEEEEEEcCCC--ccc----CCCCcEEEEEEcCHHHHHHHcCCHhHHHHHH
Confidence 0112233445555444321 111 13458899999999999988755543 4443
No 7
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.77 E-value=5.4e-18 Score=133.26 Aligned_cols=111 Identities=18% Similarity=0.376 Sum_probs=74.4
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407 71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN 150 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (239)
+.+++++++.++.++||++|... +.|+||||++|.|||+++||+||++||||+++..+.. ...+....
T Consensus 2 p~~gaii~~~~~~~vLLvr~~~~-~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~~~~---------- 69 (145)
T cd03672 2 PVYGAIILNEDLDKVLLVKGWKS-KSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYIELI---------- 69 (145)
T ss_pred CeeEEEEEeCCCCEEEEEEecCC-CCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceeeecc----------
Confidence 46778888876449999988754 5999999999999999999999999999998754321 11111111
Q ss_pred cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
+.+...++|++....... .. .....+|+.+++|++++++.++.
T Consensus 70 ------~~~~~~~~f~~~~~~~~~--~~--~~~~~~E~~~~~Wv~~~el~~~~ 112 (145)
T cd03672 70 ------IRGQNVKLYIVPGVPEDT--PF--EPKTRKEISKIEWFDIKDLPTKK 112 (145)
T ss_pred ------cCCcEEEEEEEecCCCCc--cc--CcCChhhhheEEEeeHHHhhhhh
Confidence 112233444443221111 11 11234589999999999999887
No 8
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.77 E-value=6e-18 Score=132.83 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=50.0
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
...|+++|++.++ ++||++|... +|.|.+|||++|.|||+++||+||++||||+++.
T Consensus 12 ~v~v~~vI~~~~g-~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~ 70 (144)
T cd03430 12 LVSIDLIVENEDG-QYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFL 70 (144)
T ss_pred eEEEEEEEEeCCC-eEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcc
Confidence 3577788888877 9999988653 4899999999999999999999999999999873
No 9
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5e-18 Score=129.74 Aligned_cols=56 Identities=30% Similarity=0.444 Sum_probs=49.4
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
..|++++++.++ ++||+||...+|.|.+|||+++.|||+++||+||++||||+++.
T Consensus 3 ~~v~~~i~~~~~-~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~ 58 (125)
T cd04696 3 VTVGALIYAPDG-RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLR 58 (125)
T ss_pred cEEEEEEECCCC-CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCccc
Confidence 467778888777 89999886556999999999999999999999999999999874
No 10
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=9.4e-18 Score=128.48 Aligned_cols=112 Identities=24% Similarity=0.450 Sum_probs=74.0
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407 70 RRNVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK 148 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (239)
+..|+++++++++ ++||++|... ++.|.+|||+++.|||+++||.||++||||+++.... .... .+..+.
T Consensus 2 ~~~~~~~v~~~~~-~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~-~~~~--~~~~~~----- 72 (127)
T cd04670 2 TVGVGGLVLNEKN-EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVS-VVGF--RHAHPG----- 72 (127)
T ss_pred eeEEEEEEEcCCC-eEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeE-EEEE--EecCCC-----
Confidence 4577888898877 8998776543 5999999999999999999999999999999873222 1110 011100
Q ss_pred cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
. .+....+|++.+........ ...+|+.+++|++++++.+..
T Consensus 73 -------~-~~~~~~~~~~~~~~~~~~~~-----~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 73 -------A-FGKSDLYFICRLKPLSFDIN-----FDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred -------C-cCceeEEEEEEEccCcCcCC-----CChhhhheeEEEcHHHHhcch
Confidence 0 11223445554432221111 234578899999999997654
No 11
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.76 E-value=8.9e-18 Score=131.50 Aligned_cols=116 Identities=20% Similarity=0.196 Sum_probs=77.4
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK 146 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 146 (239)
+..+|++++++.++ ++||++|... ++.|++|||++++|||+++||+||++||||+++..+..... ..+.+++.
T Consensus 12 ~~~av~~vv~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~--~~~~~~~~-- 86 (142)
T cd04700 12 EARAAGAVILNERN-DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGT--YLGRFDDG-- 86 (142)
T ss_pred eeeeEEEEEEeCCC-cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEE--EEEEcCCC--
Confidence 45688888898777 7888776543 48999999999999999999999999999998743321111 11112110
Q ss_pred hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407 147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206 (239)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 206 (239)
.....++|++........ +...+|+.+++|++++++.++..++
T Consensus 87 -----------~~~~~~~f~~~~~~~~~~------~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 87 -----------VLVLRHVWLAEPEGQTLA------PKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred -----------cEEEEEEEEEEecCCccc------cCCCCCEEEEEEECHHHhhhccccc
Confidence 011234455544322111 1123589999999999999988554
No 12
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.76 E-value=1.4e-17 Score=132.57 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=48.5
Q ss_pred eeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 71 RNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
.+|.++|++.++ +|||+||... +|.|+||||++|.|||+++||+||++||||+++
T Consensus 18 ~~v~~vI~~~~g-~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v 74 (159)
T PRK15434 18 ISLDFIVENSRG-EFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL 74 (159)
T ss_pred EEEEEEEECCCC-EEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence 467778887767 9999998753 389999999999999999999999999999985
No 13
>PLN02325 nudix hydrolase
Probab=99.76 E-value=1.8e-17 Score=130.14 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=71.9
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccce--eeeccCceeeecCchh
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAE--FLAETPYWLTYDFPLK 144 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~~~~ 144 (239)
.+.++++++++. + +|||++|...+ |.|.+|||++|.|||+++||+||++||||+++.. +++.....+. ..+.
T Consensus 8 p~~~v~~vi~~~-~-~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~-~~~~- 83 (144)
T PLN02325 8 PRVAVVVFLLKG-N-SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFL-EEPK- 83 (144)
T ss_pred CeEEEEEEEEcC-C-EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceee-cCCC-
Confidence 345666677764 5 89999987543 8999999999999999999999999999998742 2222221111 0000
Q ss_pred hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
..+....+|.+........ ....+.++..+++|+++++|....
T Consensus 84 ------------~~~~i~~~f~~~~~~~~~~----~~~~e~~e~~~~~W~~~d~Lp~~~ 126 (144)
T PLN02325 84 ------------PSHYVTVFMRAVLADPSQV----PQNLEPEKCYGWDWYEWDNLPEPL 126 (144)
T ss_pred ------------CcEEEEEEEEEEECCCCCC----CCcCCchhcCceEEEChHHCChhh
Confidence 0111233333333222111 111234467889999999999754
No 14
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=6e-18 Score=129.90 Aligned_cols=109 Identities=25% Similarity=0.386 Sum_probs=71.2
Q ss_pred eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407 72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL 149 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (239)
+|+++++++++ ++||++|... +|.|.+|||+++.|||+.+||.||++||||+++..+.........+.+.+
T Consensus 3 av~~~i~~~~~-~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~------ 75 (130)
T cd04681 3 AVGVLILNEDG-ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGG------ 75 (130)
T ss_pred eEEEEEEcCCC-cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCC------
Confidence 57778888877 8999988654 38999999999999999999999999999998753322111100111100
Q ss_pred ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407 150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL 200 (239)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~ 200 (239)
........+|++.+.... .. ...+|+.+++|++++++.
T Consensus 76 ------~~~~~~~~~~~~~~~~~~--~~-----~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 76 ------MEYDTLDLFFVCQVDDKP--IV-----KAPDDVAELKWVVPQDIE 113 (130)
T ss_pred ------ceeEEEEEEEEEEeCCCC--Cc-----CChHHhheeEEecHHHCC
Confidence 000111224445544321 11 123488999999999985
No 15
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.76 E-value=1.5e-17 Score=128.90 Aligned_cols=112 Identities=22% Similarity=0.216 Sum_probs=77.0
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407 70 RRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK 146 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 146 (239)
+.+|+++++++++ ++||++|... ++.|.+|||++|.||++++||.||++||||+++..+...... .+..
T Consensus 2 ~~~v~v~~~~~~~-~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~----~~~~--- 73 (137)
T cd03424 2 PDAVAVLPYDDDG-KVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSF----YPSP--- 73 (137)
T ss_pred CCEEEEEEEcCCC-eEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeE----ecCC---
Confidence 4678889999887 8888765432 379999999999999999999999999999998544322221 1101
Q ss_pred hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
........+|++.......... ..++|+.+++|++++++.++.
T Consensus 74 ---------~~~~~~~~~~~~~~~~~~~~~~-----~~~~E~~~~~w~~~~el~~~~ 116 (137)
T cd03424 74 ---------GFSDERIHLFLAEDLSPGEEGL-----LDEGEDIEVVLVPLDEALELL 116 (137)
T ss_pred ---------cccCccEEEEEEEcccccccCC-----CCCCCeeEEEEecHHHHHHHH
Confidence 1112234455554443211111 234589999999999999988
No 16
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.75 E-value=2e-17 Score=126.16 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=75.5
Q ss_pred eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407 72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL 149 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (239)
+|.+++++. + ++||++|... +|.|.+|||++|.|||+++||+||++||||+++..+.........+..++..
T Consensus 2 ~~~~ii~~~-~-~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~---- 75 (128)
T cd04684 2 GAYAVIPRD-G-KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGD---- 75 (128)
T ss_pred eeEEEEEeC-C-EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCC----
Confidence 456667765 5 8999998764 4999999999999999999999999999999874322111111111111100
Q ss_pred ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH
Q 026407 150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG 208 (239)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~ 208 (239)
........+|.+........ .....+|..++.|++++++......+..
T Consensus 76 ------~~~~~~~~~f~~~~~~~~~~-----~~~~~~e~~~~~W~~~~~l~~~~~~~~~ 123 (128)
T cd04684 76 ------YDAHHLCVFYDARVVGGALP-----VQEPGEDSHGAAWLPLDEAIERLLSPLV 123 (128)
T ss_pred ------eeccEEEEEEEEEEecCccc-----cCCCCCCceeeEEECHHHhhccCCCHHH
Confidence 00122334455444432110 1123457789999999999977655533
No 17
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.75 E-value=3.5e-17 Score=127.72 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=46.4
Q ss_pred eeEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 71 RNVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
..+.+.+++.++ ++||+||... +|.|++|||++|+|||+++||.||++||||+++
T Consensus 4 r~~~~~ii~~~~-~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (141)
T PRK15472 4 RTIVCPLIQNDG-AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 62 (141)
T ss_pred eeEEEEEEecCC-EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce
Confidence 355556666666 9999988643 399999999999999999999999999999986
No 18
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.74 E-value=2e-17 Score=141.31 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=73.2
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407 71 RNVGICLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL 149 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (239)
++|.+++.+ ++ ++||++|...+ |.|.+|||++|+|||+++||+||++||||+++..+..... ..+.+++
T Consensus 133 paViv~V~~-~~-~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s--~~~~~p~------ 202 (256)
T PRK00241 133 PCIIVAVRR-GD-EILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGS--QPWPFPH------ 202 (256)
T ss_pred CEEEEEEEe-CC-EEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEe--EeecCCC------
Confidence 455555544 44 89998887544 8999999999999999999999999999998754432211 1223322
Q ss_pred ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407 150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206 (239)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 206 (239)
.....|...... .++.. .++|+.+++|++++|+..+....
T Consensus 203 ----------~lm~~f~a~~~~--~~~~~-----~~~Ei~~a~W~~~del~~lp~~~ 242 (256)
T PRK00241 203 ----------SLMLGFHADYDS--GEIVF-----DPKEIADAQWFRYDELPLLPPSG 242 (256)
T ss_pred ----------eEEEEEEEEecC--CcccC-----CcccEEEEEEECHHHCcccCCch
Confidence 122334444332 22222 23488999999999998876433
No 19
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.3e-17 Score=125.60 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=71.6
Q ss_pred eEEEEEEeCCCCEEEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407 72 NVGICLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN 150 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (239)
++++++++.++ ++||++|...+ +.|+||||++|.|||+++||.||++||||+++ .+.... ..+.++
T Consensus 2 ~~~~ii~~~~~-~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~-~~~~~~---~~~~~~-------- 68 (121)
T cd04669 2 RASIVIINDQG-EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV-RVEEIF---LIVNQN-------- 68 (121)
T ss_pred ceEEEEEeCCC-EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE-eeeeEE---EEEeeC--------
Confidence 46677777756 89998886543 89999999999999999999999999999997 222111 111111
Q ss_pred cccCCcccCceeEEEEEEEccccceecccCC--CCCCCccceeEEeCHhHHHHhh
Q 026407 151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGD--GSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
+...++|.+.............. ..++.+..++.|++++++..+.
T Consensus 69 --------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~ 115 (121)
T cd04669 69 --------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIP 115 (121)
T ss_pred --------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence 12244555554432111000000 0113456789999999998764
No 20
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.3e-17 Score=124.69 Aligned_cols=107 Identities=21% Similarity=0.322 Sum_probs=72.6
Q ss_pred eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc-eeeeccCceeeecCchhhhhhcc
Q 026407 72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA-EFLAETPYWLTYDFPLKVKQKLN 150 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (239)
+|.+++++.++ ++||++|... +.|.+|||+++.|||+++||+||++||||+.+. .+.... .+.+..
T Consensus 2 ~~~~~i~~~~~-~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~----~~~~~~------- 68 (120)
T cd04680 2 GARAVVTDADG-RVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLG----VYYHSA------- 68 (120)
T ss_pred ceEEEEECCCC-eEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEE----EEecCC-------
Confidence 46778888877 8999888764 499999999999999999999999999999875 322111 111111
Q ss_pred cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.......++|.+....... ....+|+.+++|++++++.+..
T Consensus 69 -------~~~~~~~~~f~~~~~~~~~-----~~~~~E~~~~~w~~~~~l~~~~ 109 (120)
T cd04680 69 -------SGSWDHVIVFRARADTQPV-----IRPSHEISEARFFPPDALPEPT 109 (120)
T ss_pred -------CCCceEEEEEEecccCCCc-----cCCcccEEEEEEECHHHCcccC
Confidence 0111223344444332211 2234588999999999998754
No 21
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.73 E-value=6.4e-17 Score=124.91 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=75.9
Q ss_pred EEEEEEeCCCCEEEEEEecCCC-CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407 73 VGICLINSSKKKIFAATRIHIP-YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR 151 (239)
Q Consensus 73 v~v~i~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (239)
|++++ ..++ ++||++|...+ +.|.+|||++++|||+.+||.||++||||+++...... ....+..+...
T Consensus 3 v~~ii-~~~~-~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~--~~~~~~~~~~~------ 72 (134)
T cd03675 3 VAAVV-ERDG-RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALL--GIYQWTAPDSD------ 72 (134)
T ss_pred EEEEE-EECC-EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEE--EEEEeecCCCC------
Confidence 33444 4455 89998876544 79999999999999999999999999999987432111 11122221100
Q ss_pred ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhcC
Q 026407 152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCLA 220 (239)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~~ 220 (239)
.......|.+....... ....++|+.++.|++++++.++...... .+.+.+..|+..
T Consensus 73 ------~~~~~~~f~~~~~~~~~------~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~ 130 (134)
T cd03675 73 ------TTYLRFAFAAELLEHLP------DQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG 130 (134)
T ss_pred ------eeEEEEEEEEEECCCCC------CCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence 00112233333332211 1123457889999999999988631111 455555666553
No 22
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=3.9e-17 Score=125.32 Aligned_cols=114 Identities=25% Similarity=0.314 Sum_probs=75.2
Q ss_pred eeeEEEEEEeCCCCEEEEEEecC--CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407 70 RRNVGICLINSSKKKIFAATRIH--IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ 147 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~--~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 147 (239)
+.+|.+++++.++ ++||++|.. .++.|.+|||+++.|||+++||.||++||||+++..+.... .....+++
T Consensus 2 ~~~v~~ii~~~~~-~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~--~~~~~~~~---- 74 (129)
T cd04678 2 RVGVGVFVLNPKG-KVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLT--VTNDVFEE---- 74 (129)
T ss_pred ceEEEEEEECCCC-eEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEE--EEeEEeCC----
Confidence 4678888998877 999999874 34899999999999999999999999999999874332111 11111111
Q ss_pred hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407 148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER 202 (239)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~ 202 (239)
........+|.+........... .+.+|+.+++|++++++.++
T Consensus 75 --------~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 75 --------EGKHYVTIFVKAEVDDGEAEPNK----MEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred --------CCcEEEEEEEEEEeCCCCcccCC----CCCceeCceEEeCHHHCCCc
Confidence 00112233444444432111110 13447889999999999975
No 23
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=4.6e-17 Score=123.91 Aligned_cols=107 Identities=26% Similarity=0.356 Sum_probs=69.6
Q ss_pred EEEEEEeCCCCEEEEEEecCC-----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407 73 VGICLINSSKKKIFAATRIHI-----PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ 147 (239)
Q Consensus 73 v~v~i~~~~~~~vLl~~r~~~-----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 147 (239)
+++++++ ++ ++||++|... +|.|.||||+++.||++++||.||++||||+++.... ......+.++.
T Consensus 4 ~~~~~~~-~g-~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~--~~~~~~~~~~~---- 75 (122)
T cd04682 4 ALALLIG-DG-RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESR--IPWFRVYPSAS---- 75 (122)
T ss_pred EEEEEEc-CC-EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccc--cceeEecccCC----
Confidence 4444444 46 9999998653 3899999999999999999999999999999873211 01111111110
Q ss_pred hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.....++|++...... ... ...+|+.+++|++++++.+..
T Consensus 76 ----------~~~~~~~f~~~~~~~~-~~~-----~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 76 ----------PPGTEHVFVVPLTARE-DAI-----LFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred ----------CCceEEEEEEEEecCC-Ccc-----ccCchhheeecccHHHHhhcc
Confidence 1123444555444322 111 234588999999999998653
No 24
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.73 E-value=9.8e-17 Score=123.13 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=76.1
Q ss_pred eeEEEEEEeC--CCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee--eeccCceeeecCchhh
Q 026407 71 RNVGICLINS--SKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEF--LAETPYWLTYDFPLKV 145 (239)
Q Consensus 71 ~~v~v~i~~~--~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~~~ 145 (239)
+.|.+++++. ++ ++||++|... +|.|.+|||+++.|||+++||.||++||||+++..+ +.....+..+.+.+
T Consensus 2 ~~~~v~~~~~~~~~-~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~-- 78 (129)
T cd04664 2 RSVLVVPYRLTGEG-RVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD-- 78 (129)
T ss_pred cEEEEEEEEeCCCC-EEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCC--
Confidence 3567777776 66 9999998764 699999999999999999999999999999987322 22111110111111
Q ss_pred hhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407 146 KQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206 (239)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 206 (239)
........+|++.+.... . ....+|+.++.|++++++.++...+
T Consensus 79 ----------~~~~~~~~~f~~~~~~~~-~------~~~~~E~~~~~W~~~~e~~~~~~~~ 122 (129)
T cd04664 79 ----------NGRVWTEHPFAFHLPSDA-V------VTLDWEHDAFEWVPPEEAAALLLWE 122 (129)
T ss_pred ----------CceEEEEeEEEEEcCCCC-c------ccCCccccccEecCHHHHHHHHcCh
Confidence 001123345555544321 1 1123488899999999999876433
No 25
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=5.2e-17 Score=127.28 Aligned_cols=117 Identities=17% Similarity=0.302 Sum_probs=77.1
Q ss_pred ceeeEEEEEEeCC---CCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceee
Q 026407 69 YRRNVGICLINSS---KKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLT 138 (239)
Q Consensus 69 ~~~~v~v~i~~~~---~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~ 138 (239)
++.+|.+++++.+ + ++|+++|... +|.|++ |||++++|||+++||+||++||||+++. .+...... .
T Consensus 1 ~h~~v~~~v~~~~~~~~-~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~--~ 77 (144)
T cd04692 1 WHRTFHCWIITKDEGKG-YVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTF--K 77 (144)
T ss_pred CceEEEEEEEEccCCCC-EEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEE--E
Confidence 4678889999887 5 9999999753 489999 5999999999999999999999999752 23211111 1
Q ss_pred ecCchhhhhhcccccCCcc-cCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 139 YDFPLKVKQKLNRRWGTNY-KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
+.+.. .+.. ......+|++.......... ..++|+.+++|++++++.+++
T Consensus 78 ~~~~~----------~~~~~~~~~~~~f~~~~~~~~~~~~-----~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 78 IEYDH----------IGKLIDREFHHVYLYELKVPLEEFT-----LQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred Eeccc----------cCCCccceEEEEEEEeccCChhhcC-----CChhHhheEEEECHHHHHHHH
Confidence 11110 0000 11223445554432111111 234588999999999999877
No 26
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.72 E-value=2e-16 Score=123.16 Aligned_cols=58 Identities=33% Similarity=0.513 Sum_probs=49.6
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407 70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~ 128 (239)
+..+++++++.++.++||++|.. .|.|.+|||++|+|||+++||.||++||||+++..
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~ 59 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELLG 59 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCccc
Confidence 35678888888723999988865 48999999999999999999999999999998643
No 27
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=9.4e-17 Score=121.55 Aligned_cols=54 Identities=35% Similarity=0.578 Sum_probs=45.7
Q ss_pred eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
+|++++++. + ++||++|... ++.|.+|||+++.|||+++||.||++||||+++.
T Consensus 2 ~v~~ii~~~-~-~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~ 57 (122)
T cd04673 2 AVGAVVFRG-G-RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAE 57 (122)
T ss_pred cEEEEEEEC-C-EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEee
Confidence 455666764 5 8999888653 3889999999999999999999999999999974
No 28
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.72 E-value=1.1e-16 Score=122.73 Aligned_cols=115 Identities=25% Similarity=0.438 Sum_probs=75.2
Q ss_pred eeEEEEEEeCCC--CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407 71 RNVGICLINSSK--KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK 148 (239)
Q Consensus 71 ~~v~v~i~~~~~--~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (239)
.++++++++.++ .++||.+|.. +.|.+|||++++|||+.+||.||++||||+++..+.........+.+..
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~----- 75 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQV----- 75 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccc-----
Confidence 456666665543 3688888886 8999999999999999999999999999999854432211111122110
Q ss_pred cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407 149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206 (239)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 206 (239)
...+....+|++..... ..... .+|..++.|++++++.++...+
T Consensus 76 -------~~~~~~~~~f~~~~~~~-~~~~~------~~E~~~~~W~~~~e~~~~~~~~ 119 (130)
T cd03428 76 -------RGKLKTVTYFLAELRPD-VEVKL------SEEHQDYRWLPYEEALKLLTYE 119 (130)
T ss_pred -------cCcceEEEEEEEEeCCC-Ccccc------ccceeeEEeecHHHHHHHcCch
Confidence 00123345555555421 11111 1488999999999999987544
No 29
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=6.8e-17 Score=124.16 Aligned_cols=58 Identities=33% Similarity=0.552 Sum_probs=50.8
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~ 128 (239)
+...+.+++++.++ ++||++|... +.|.||||+++.|||+++||.||++||||+++..
T Consensus 6 ~~~~~~~~v~~~~~-~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~ 63 (132)
T cd04677 6 ILVGAGVILLNEQG-EVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVEE 63 (132)
T ss_pred cccceEEEEEeCCC-CEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeee
Confidence 44677788888877 8999988764 8999999999999999999999999999998743
No 30
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=7.5e-17 Score=123.58 Aligned_cols=108 Identities=22% Similarity=0.344 Sum_probs=73.4
Q ss_pred eEEEEEEeCCCCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407 72 NVGICLINSSKKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK 146 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 146 (239)
++.+++++.++ ++||++|... +|.|++ |||+++.||++++||+||++||||+++..+..... +.+....
T Consensus 2 ~~~v~i~~~~~-~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~----~~~~~~~- 75 (126)
T cd04697 2 ATYIFVFNSEG-KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGL----FYYDTDG- 75 (126)
T ss_pred eEEEEEEcCCC-eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeE----EEecCCC-
Confidence 56788899888 9999998642 489999 69999999999999999999999999864432221 2221100
Q ss_pred hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407 147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR 204 (239)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 204 (239)
......+|.+.... ... ...+|+.++.|++++++.++..
T Consensus 76 -----------~~~~~~~f~~~~~~---~~~-----~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 76 -----------NRVWGKVFSCVYDG---PLK-----LQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred -----------ceEEEEEEEEEECC---CCC-----CCHhHhhheEEcCHHHHHHHhh
Confidence 00112233333321 112 2345888999999999998763
No 31
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.2e-16 Score=122.49 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=47.2
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 70 RRNVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
|.+|.+++++. + ++||++|... ++.|.+|||+++.|||+++||.||+.||||+++.
T Consensus 1 r~~a~~iv~~~-~-~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~ 57 (128)
T cd04687 1 RNSAKAVIIKN-D-KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVE 57 (128)
T ss_pred CcEEEEEEEEC-C-EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccc
Confidence 35667777764 5 8999888644 3789999999999999999999999999999973
No 32
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.3e-16 Score=122.04 Aligned_cols=55 Identities=25% Similarity=0.482 Sum_probs=47.9
Q ss_pred eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
.|++++++.++ ++||++|... ++.|.+|||++|.|||+++||.||++||||+++.
T Consensus 2 ~~~~vv~~~~~-~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~ 58 (123)
T cd04671 2 IVAAVILNNQG-EVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCE 58 (123)
T ss_pred EEEEEEEcCCC-EEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeee
Confidence 46677788777 9999888643 3899999999999999999999999999999874
No 33
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1e-16 Score=122.76 Aligned_cols=108 Identities=24% Similarity=0.414 Sum_probs=71.8
Q ss_pred eEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecCchh
Q 026407 72 NVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLK 144 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~~~~ 144 (239)
+|.+++++.++ +|||++|... +|.|++| ||+++.||++ +||+||++||||+++. .+. ....+.+..
T Consensus 2 ~v~v~~~~~~g-~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~----~~~~~~~~~- 74 (127)
T cd04693 2 VVHVCIFNSKG-ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELR----PLFRYFFEA- 74 (127)
T ss_pred eEEEEEEeCCC-eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcE----EEEEEEeec-
Confidence 56778888877 9999988742 4899998 8999999999 9999999999999863 221 111222111
Q ss_pred hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407 145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205 (239)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 205 (239)
.+ ...++++.......... ...+|+.+++|++++++.+++.+
T Consensus 75 -------------~~-~~~~~~~~~~~~~~~~~-----~~~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04693 75 -------------EG-FDDYYLFYADVEIGKLI-----LQKEEVDEVKFVSKDEIDGLIGH 116 (127)
T ss_pred -------------CC-eEEEEEEEecCcccccc-----cCHHHhhhEEEeCHHHHHHHHhc
Confidence 01 11222333222111111 23458899999999999988743
No 34
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=2.8e-16 Score=121.19 Aligned_cols=107 Identities=26% Similarity=0.361 Sum_probs=68.0
Q ss_pred eCCCCEEEEEEecC-CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcccccCCcc
Q 026407 79 NSSKKKIFAATRIH-IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNY 157 (239)
Q Consensus 79 ~~~~~~vLl~~r~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (239)
+.++ ++||.+|.. .+|.|.+|||++++|||+.+||.||++||||+++..+.........+..++.
T Consensus 11 ~~~~-~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~------------- 76 (131)
T cd04695 11 DKET-KVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDN------------- 76 (131)
T ss_pred CCCC-EEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCc-------------
Confidence 4444 899988875 3599999999999999999999999999999987544211110011111110
Q ss_pred cCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407 158 KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206 (239)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 206 (239)
......+|++..... ... ...+|+.+++|++++++.++...+
T Consensus 77 ~~~~~~~f~~~~~~~-~~~------~~~~E~~~~~W~~~~e~~~~~~~~ 118 (131)
T cd04695 77 RILMAPVFVGFVPPH-QEV------VLNHEHTEYRWCSFAEALELAPFP 118 (131)
T ss_pred eEEEEEEEEEEecCC-Ccc------ccCchhcccEecCHHHHHHhcCCh
Confidence 001122334333221 111 123488999999999999987443
No 35
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.71 E-value=2.2e-16 Score=122.14 Aligned_cols=112 Identities=20% Similarity=0.387 Sum_probs=71.8
Q ss_pred CCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce-eeecc-CceeeecCchhhhhhcccccCCccc
Q 026407 82 KKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAE-FLAET-PYWLTYDFPLKVKQKLNRRWGTNYK 158 (239)
Q Consensus 82 ~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
+.++||++|... .|.|.||||++|+|||+++||.||++||||+++.. +.+.. .....+.++.... .....
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~-------~~~~~ 84 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-------NEGIV 84 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc-------cccCc
Confidence 338888888653 38999999999999999999999999999997632 22111 1223333332110 00112
Q ss_pred CceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH
Q 026407 159 GQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG 208 (239)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~ 208 (239)
+....+|.+...+. +.. ..+|+.++.|++++++.+++....+
T Consensus 85 ~~~~~~f~~~~~~g--~~~------~~~e~~~~~W~~~~el~~~l~~~~~ 126 (132)
T cd04661 85 GAKVFFFKARYMSG--QFE------LSQNQVDFKWLAKEELQKYLNPPYL 126 (132)
T ss_pred ccEEEEEEEEEecC--ccc------cCCCcceeEecCHHHHHhhcCHHHH
Confidence 23445555554332 122 1248899999999999998765544
No 36
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.2e-16 Score=120.88 Aligned_cols=103 Identities=25% Similarity=0.346 Sum_probs=67.4
Q ss_pred EEEEEEeCCCCEEEEEEecC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407 73 VGICLINSSKKKIFAATRIH----IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK 148 (239)
Q Consensus 73 v~v~i~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (239)
|++++++. + ++||++|.. .+|.|+||||++|+|||+++||.||++||||+++..+... ..+.++..
T Consensus 3 v~~vi~~~-~-~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l----~~~~~~~~---- 72 (117)
T cd04691 3 VVGVLFSD-D-KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYL----CSLYHPTS---- 72 (117)
T ss_pred EEEEEEEC-C-EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEE----EEEeccCC----
Confidence 44455554 5 899999864 3489999999999999999999999999999986433211 11221110
Q ss_pred cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.....++|.+.... ... ..+|..++.|++++++....
T Consensus 73 ---------~~~~~~~~~~~~~~--~~~-------~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 73 ---------ELQLLHYYVVTFWQ--GEI-------PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred ---------CeEEEEEEEEEEec--CCC-------CcccccccEEcCHHHcchhh
Confidence 11123333433221 111 12488999999999998754
No 37
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.5e-16 Score=121.59 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=72.4
Q ss_pred eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407 72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR 151 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (239)
+|.+++++. + ++||++|.. .+.|.+|||+++.||++.+||.||++||||+++............+.+..
T Consensus 3 ~v~~vi~~~-~-~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-------- 71 (126)
T cd04688 3 RAAAIIIHN-G-KLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNG-------- 71 (126)
T ss_pred EEEEEEEEC-C-EEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCC--------
Confidence 455566654 4 899998876 58999999999999999999999999999998733221111101111111
Q ss_pred ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
........+|.+...+............++.|+.++.|++++++..+.
T Consensus 72 ----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 119 (126)
T cd04688 72 ----KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIK 119 (126)
T ss_pred ----cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCc
Confidence 001223455555555432110000001234588999999999998653
No 38
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.70 E-value=9.9e-17 Score=127.66 Aligned_cols=110 Identities=21% Similarity=0.167 Sum_probs=72.7
Q ss_pred eeEEEEEEeCCC-CEEEEEEecCC----CCcEEcCceecCCC-CCHHHHHHHHHHHHhCCccceeeeccCceeeecCchh
Q 026407 71 RNVGICLINSSK-KKIFAATRIHI----PYTWQMPQGGADEG-EDLINAALRELREETGVTSAEFLAETPYWLTYDFPLK 144 (239)
Q Consensus 71 ~~v~v~i~~~~~-~~vLl~~r~~~----~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 144 (239)
.+|.+++.+.++ .++||++|... +|.|++|||++|.| ||+++||+||++||||+++..+.........+..
T Consensus 3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~--- 79 (157)
T cd03426 3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTR--- 79 (157)
T ss_pred eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCcccc---
Confidence 355666666652 48999998753 59999999999999 9999999999999999987543211111000000
Q ss_pred hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407 145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER 202 (239)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~ 202 (239)
.+...+.|++..... ..... +.+|+.++.|++++++.+.
T Consensus 80 -------------~~~~v~~~~~~~~~~-~~~~~-----~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 80 -------------SGFVVTPVVGLVPPP-LPLVL-----NPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred -------------CCCEEEEEEEEECCC-CCCCC-----CHHHhheeEEEcHHHHhCc
Confidence 122344455554432 11222 2348999999999999875
No 39
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.70 E-value=7.6e-17 Score=124.48 Aligned_cols=105 Identities=23% Similarity=0.358 Sum_probs=71.7
Q ss_pred eEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407 72 NVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN 150 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (239)
+|.+.+++.++ ++||++|... +|.|.+|||+++.|||+++||.||++||||+++..+..... ..+.++
T Consensus 2 ~v~i~l~~~~~-~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~--~~~~~~-------- 70 (131)
T cd03429 2 AVIVLVIDGGD-RILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGS--QPWPFP-------- 70 (131)
T ss_pred eEEEEEEeCCC-EEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEee--cCCCCC--------
Confidence 45666677655 9999888755 48999999999999999999999999999999754432211 011111
Q ss_pred cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407 151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER 202 (239)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~ 202 (239)
.....+|++.... .... ...+|+.++.|++++++.++
T Consensus 71 --------~~~~~~f~~~~~~--~~~~-----~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 71 --------SSLMLGFTAEADS--GEIV-----VDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred --------ceEEEEEEEEEcC--Cccc-----CCchhhhccEeecHHHHhhc
Confidence 1123344444332 1122 23458889999999999985
No 40
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.70 E-value=2.1e-16 Score=126.76 Aligned_cols=117 Identities=25% Similarity=0.333 Sum_probs=76.7
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL 143 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 143 (239)
++.+|+++++++++ ++||++|... +|.|.+| ||++++|||+++||+||++||||+++..+... .....|..+.
T Consensus 29 ~~~~v~v~i~~~~~-~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~-~~~~~~~~~~ 106 (165)
T cd02885 29 LHRAFSVFLFNSKG-RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV-LPRFRYRAPD 106 (165)
T ss_pred ceeEEEEEEEcCCC-cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc-cceEEEEEEc
Confidence 47888899999887 8999998753 4999996 89999999999999999999999997433221 0111111110
Q ss_pred hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407 144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR 204 (239)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 204 (239)
. ..........+|.+..... .. ...+|+.+++|++++++.++..
T Consensus 107 ~---------~~~~~~~i~~~f~~~~~~~---~~-----~~~~Ev~~~~w~~~~el~~~~~ 150 (165)
T cd02885 107 D---------GGLVEHEIDHVFFARADVT---LI-----PNPDEVSEYRWVSLEDLKELVA 150 (165)
T ss_pred C---------CCceeeEEEEEEEEEeCCC---CC-----CCccceeEEEEECHHHHHHHHH
Confidence 0 0000111223343333221 11 1345889999999999998773
No 41
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=2.3e-16 Score=120.14 Aligned_cols=56 Identities=27% Similarity=0.478 Sum_probs=49.8
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 70 RRNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
++.|.+++++.++ ++||++|... |.|.+|||+++.||++++||.||++||||+++.
T Consensus 2 ~~~v~~ii~~~~~-~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~ 57 (129)
T cd04676 2 LPGVTAVVRDDEG-RVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVE 57 (129)
T ss_pred cceEEEEEECCCC-eEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeE
Confidence 4577788888777 9999999875 899999999999999999999999999999863
No 42
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.70 E-value=2.8e-16 Score=121.63 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=69.4
Q ss_pred eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407 72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL 149 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (239)
+..+++.+. + ++||++|... ++.|.+|||++|.|||+.+||+||++||||+++..+... ....+..+.
T Consensus 3 ~~~~~i~~~-~-~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~--~~~~~~~~~------ 72 (137)
T cd03427 3 TTLCFIKDP-D-KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLV--GIIKFPFPG------ 72 (137)
T ss_pred EEEEEEEEC-C-EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEE--EEEEEEcCC------
Confidence 344455554 5 8999888764 589999999999999999999999999999987433211 112222211
Q ss_pred ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.......+++.+........ ...|..+++|++++++.++.
T Consensus 73 --------~~~~~~~~~f~~~~~~~~~~------~~~e~~~~~W~~~~el~~~~ 112 (137)
T cd03427 73 --------EEERYGVFVFLATEFEGEPL------KESEEGILDWFDIDDLPLLP 112 (137)
T ss_pred --------CCcEEEEEEEEECCcccccC------CCCccccceEEcHhhccccc
Confidence 01123334444433222211 12355689999999998765
No 43
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=2.2e-16 Score=119.50 Aligned_cols=54 Identities=35% Similarity=0.572 Sum_probs=45.5
Q ss_pred eEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 72 NVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
+|.+++++. + ++||++|... +|.|++|||+++.|||+++||.||++||||+++.
T Consensus 2 ~v~~vi~~~-~-~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~ 58 (120)
T cd04683 2 AVYVLLRRD-D-EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLD 58 (120)
T ss_pred cEEEEEEEC-C-EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccC
Confidence 455566654 5 8999998753 4899999999999999999999999999999874
No 44
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.69 E-value=4.5e-16 Score=118.84 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=72.4
Q ss_pred eEEEEEEeCC--CCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcccee-eeccCceeeecCchhhhhh
Q 026407 72 NVGICLINSS--KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEF-LAETPYWLTYDFPLKVKQK 148 (239)
Q Consensus 72 ~v~v~i~~~~--~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~~~~ 148 (239)
.+++++++.+ +.++||++|... +.|.+|||++|.|||+++||+||++||||++.... ... ..+.+..+..
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l--~~~~~~~~~~---- 74 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPL--GRFEYRKRSK---- 74 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEE--EEEEeeecCC----
Confidence 3556666543 348999888654 89999999999999999999999999999986322 111 1112222110
Q ss_pred cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407 149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205 (239)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 205 (239)
.........+|.+...... . ..++.+..+++|++++++.+++..
T Consensus 75 ------~~~~~~~~~~f~~~~~~~~---~----~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 75 ------NRPPRCEVAVFPLEVTEEL---D----EWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred ------CCCceEEEEEEEEEEeccc---c----CCcccCceEEEEecHHHHHHhcCC
Confidence 0011223455555554321 1 112346779999999999987743
No 45
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.69 E-value=6.8e-16 Score=125.96 Aligned_cols=118 Identities=20% Similarity=0.341 Sum_probs=77.2
Q ss_pred CCceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecC
Q 026407 67 DGYRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF 141 (239)
Q Consensus 67 ~~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 141 (239)
..++.++++++++.++ +|||++|... +|.|.+| ||++++|||+++||+||+.||||+++..+..... .+.+..
T Consensus 31 ~~~h~av~v~i~~~~g-~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~-~~~~~~ 108 (184)
T PRK03759 31 TPLHLAFSCYLFDADG-RLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLP-DFRYRA 108 (184)
T ss_pred CCeeeEEEEEEEcCCC-eEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccc-eEEEEE
Confidence 3477888899999877 9999998532 4788876 8999999999999999999999998854432211 111111
Q ss_pred chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
... .+........+|+....+ ... .+.+|+.++.|++++++.+++
T Consensus 109 ~~~---------~~~~~~~~~~vf~~~~~~---~~~-----~~~~Ev~~~~W~~~~el~~~i 153 (184)
T PRK03759 109 TDP---------NGIVENEVCPVFAARVTS---ALQ-----PNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred ecC---------CCceeeEEEEEEEEEECC---CCC-----CChhHeeeEEEECHHHHHHHH
Confidence 100 000011122344443331 112 234588999999999999988
No 46
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.68 E-value=4e-16 Score=126.89 Aligned_cols=125 Identities=20% Similarity=0.247 Sum_probs=77.7
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL 143 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 143 (239)
.+.++.+++++.++ ++||++|... +|.| .+|||++++|||+++||+||++||||+++..+..... +.+....
T Consensus 36 ~h~~~~v~v~~~~g-~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~--~~~~~~~ 112 (180)
T PRK15393 36 RHRATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQ--FYFEDEN 112 (180)
T ss_pred ceEEEEEEEECCCC-eEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceecee--EEecCCC
Confidence 45667777888777 9999998643 3556 5899999999999999999999999998644322111 1111100
Q ss_pred hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhhhc
Q 026407 144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPFCL 219 (239)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~~~ 219 (239)
......+|.+... .... ...+|+.+++|++++++.++.. .+. ..+..+..++.
T Consensus 113 --------------~~~~~~~f~~~~~---~~~~-----~~~~E~~~~~W~~~~el~~~~~-~~~~~~~~~l~~~l~ 166 (180)
T PRK15393 113 --------------CRVWGALFSCVSH---GPFA-----LQEEEVSEVCWMTPEEITARCD-EFTPDSLKALALWLT 166 (180)
T ss_pred --------------ceEEEEEEEEEeC---CCCC-----CChHHeeEEEECCHHHHhhhhh-hcCccHHHHHHHHHH
Confidence 0001122322221 1111 2345899999999999998741 121 44455555544
No 47
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.68 E-value=6.3e-16 Score=119.39 Aligned_cols=54 Identities=33% Similarity=0.502 Sum_probs=44.8
Q ss_pred EEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 73 VGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 73 v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
++.++++.++ ++||++|... +|.|+||||++|.||++++|+.||+.||||+++.
T Consensus 6 ~~~~ii~~~~-~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~ 62 (135)
T PRK10546 6 VVAAIIERDG-KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEAT 62 (135)
T ss_pred EEEEEEecCC-EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccc
Confidence 3344445556 8999998654 3899999999999999999999999999999863
No 48
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=1e-15 Score=120.03 Aligned_cols=55 Identities=40% Similarity=0.674 Sum_probs=48.4
Q ss_pred eEEEEEEeCCCCEEEEEEecC----CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 72 NVGICLINSSKKKIFAATRIH----IPYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
.|++++++.++ ++||+||.. .+|.|.+|||++++||++++||+||+.||||+.+.
T Consensus 3 ~v~viv~~~~~-~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~ 61 (143)
T cd04694 3 GVAVLLQSSDQ-KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD 61 (143)
T ss_pred EEEEEEEcCCC-EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 46677788877 999999974 34899999999999999999999999999999874
No 49
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=6.5e-16 Score=119.23 Aligned_cols=52 Identities=35% Similarity=0.581 Sum_probs=45.1
Q ss_pred eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
+|.++|++. + +|||+++... +.|.||||++|+||++.+||+||++||||+++
T Consensus 2 ~~~~ii~~~-~-~vLLv~~~~~-~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIILQG-D-KILLLYTKRY-GDYKFPGGGVEKGEDHIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEEEC-C-EEEEEEEcCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 466777765 4 8999888653 68999999999999999999999999999986
No 50
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.67 E-value=9.1e-16 Score=117.10 Aligned_cols=54 Identities=30% Similarity=0.370 Sum_probs=45.6
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
..|.+++++ ++ ++||++|.. .+.|.+|||++|.|||+.+||.||++||||+++.
T Consensus 2 ~~~~~vi~~-~~-~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~ 55 (125)
T cd04689 2 LRARAIVRA-GN-KVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVS 55 (125)
T ss_pred eEEEEEEEe-CC-EEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence 355666665 44 899988865 4799999999999999999999999999999874
No 51
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.67 E-value=1.2e-15 Score=116.34 Aligned_cols=55 Identities=31% Similarity=0.459 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 72 NVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
.+++++.+.++ ++||+||... +|.|+||||++++||++++||.||+.||||+++.
T Consensus 6 ~~~~ii~~~~~-~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~ 63 (129)
T PRK10776 6 IAVGIIRNPNN-EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQ 63 (129)
T ss_pred EEEEEEECCCC-EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcee
Confidence 34445566666 9999999764 3899999999999999999999999999999863
No 52
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=7.1e-16 Score=115.60 Aligned_cols=101 Identities=20% Similarity=0.332 Sum_probs=68.0
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccccc
Q 026407 74 GICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRW 153 (239)
Q Consensus 74 ~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (239)
++++. .++ ++||++|.. |.|.+|||++++||++++||.||++||||+++..+... ..+...
T Consensus 4 ~~i~~-~~~-~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~----~~~~~~----------- 64 (112)
T cd04667 4 TVICR-RGG-RVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYL----FHVDGG----------- 64 (112)
T ss_pred EEEEe-cCC-EEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEE----EEEeCC-----------
Confidence 34443 445 899999875 89999999999999999999999999999987543221 111110
Q ss_pred CCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407 154 GTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205 (239)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 205 (239)
....++|++.+... . .....+|+.+++|++++++.++...
T Consensus 65 -----~~~~~~f~~~~~~~--~-----~~~~~~e~~~~~W~~~~el~~~~~~ 104 (112)
T cd04667 65 -----STRHHVFVASVPPS--A-----QPKPSNEIADCRWLSLDALGDLNAS 104 (112)
T ss_pred -----CEEEEEEEEEcCCc--C-----CCCCchheeEEEEecHHHhhhcccc
Confidence 11233444433321 1 1123458889999999999987533
No 53
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=1e-15 Score=115.44 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=46.8
Q ss_pred EEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407 73 VGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128 (239)
Q Consensus 73 v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~ 128 (239)
+.+++++.++ ++||++|.. .+.|.+|||++++||++++||+||++||||+++..
T Consensus 3 ~~~~v~~~~~-~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~ 56 (118)
T cd04690 3 AAALILVRDG-RVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDP 56 (118)
T ss_pred EEEEEEecCC-eEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccCh
Confidence 5566777777 899988865 48999999999999999999999999999998743
No 54
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.67 E-value=1.3e-16 Score=135.97 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=99.5
Q ss_pred cCCccccccccccccccccCCCCCCCCCCcCCCccccccccCCCCCCCCceeeEEEEEEeCCCCEEEEEEecCCC-CcEE
Q 026407 20 SYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHIP-YTWQ 98 (239)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~a~~~~~~~~~~~~~~~~~~~v~v~i~~~~~~~vLl~~r~~~~-~~w~ 98 (239)
=||.|++....-..+.+..|.+.. |+. .+...++.+ +.|..+++++++++.||.|...++ |+|.
T Consensus 152 FCp~CG~~tkp~e~g~k~~Cs~~~-C~~-------~n~~yPr~d-------PvVIm~li~~d~~~~LL~R~~r~~~gl~t 216 (345)
T KOG3084|consen 152 FCPGCGSPTKPEEAGTKLQCSDET-CPS-------CNVIYPRTD-------PVVIMLLIDHDGKHALLGRQKRYPPGLWT 216 (345)
T ss_pred cCcccCCCcccccCCccceeeccc-CCc-------CCeeccCCC-------CeEEEEEEcCCCCEeeeecccCCCCchhh
Confidence 499999998888888776666444 331 222233333 688889999999888887765544 9999
Q ss_pred cCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeec-CchhhhhhcccccCCcccCceeEEEEEEEccccceec
Q 026407 99 MPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYD-FPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEIN 177 (239)
Q Consensus 99 ~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (239)
.++|.+|+|||++|||+||++||+|+++..+...... .|+ +|.+.|.- .+.+.....+++
T Consensus 217 ~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQ--PWP~~p~SLMIg-----------------c~ala~~~~~I~ 277 (345)
T KOG3084|consen 217 CLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQ--PWPLMPQSLMIG-----------------CLALAKLNGKIS 277 (345)
T ss_pred hhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecC--CCCCCchHHHHH-----------------HHHHHhhCCccc
Confidence 9999999999999999999999999999766432221 233 44443331 000000112233
Q ss_pred ccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 178 LLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 178 ~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.+ .+.|..+++|++-+|+.+.+
T Consensus 278 vd----~dlEleDaqwF~r~ev~~aL 299 (345)
T KOG3084|consen 278 VD----KDLELEDAQWFDREEVKSAL 299 (345)
T ss_pred cC----cchhhhhcccccHHHHHHHH
Confidence 32 23488999999999999866
No 55
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1e-15 Score=116.84 Aligned_cols=56 Identities=32% Similarity=0.544 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccce
Q 026407 72 NVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTSAE 128 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~ 128 (239)
+|.+++++.++ ++||++|... +|.|++|||++++|||+.+||.||++||||+++..
T Consensus 3 ~v~~vv~~~~~-~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~ 62 (129)
T cd04699 3 AVAALIVKDVG-RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTP 62 (129)
T ss_pred eEEEEEECCCC-cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEe
Confidence 45666777656 8999988753 58999999999999999999999999999998743
No 56
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.1e-15 Score=116.40 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=46.2
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
..|.++++++ + ++||.+|.. .+.|.+|||+++.|||+++||+||++||||+.+
T Consensus 3 ~~v~~~i~~~-~-~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~ 55 (123)
T cd04672 3 VDVRAAIFKD-G-KILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV 55 (123)
T ss_pred ceEEEEEEEC-C-EEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCee
Confidence 4566777776 4 888888865 589999999999999999999999999999986
No 57
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.66 E-value=3.4e-15 Score=121.97 Aligned_cols=110 Identities=22% Similarity=0.153 Sum_probs=73.3
Q ss_pred eEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407 72 NVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK 148 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (239)
+|.++.+++++ ++||+++...+ +.|+||||.+|+||++++||+||++||||+++..+..........+
T Consensus 49 ~v~v~~~~~~~-~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~-------- 119 (185)
T PRK11762 49 AVMIVPILDDD-TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPS-------- 119 (185)
T ss_pred EEEEEEEeCCC-EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCC--------
Confidence 56666677666 88888875432 7899999999999999999999999999999865543322211111
Q ss_pred cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407 149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR 204 (239)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 204 (239)
+.....+.|++.... . .....++.|..++.|++++++.+++.
T Consensus 120 --------~~~~~~~~f~a~~~~--~----~~~~~~e~E~i~~~~~~~~e~~~~~~ 161 (185)
T PRK11762 120 --------YFSSKMNIVLAEDLY--P----ERLEGDEPEPLEVVRWPLADLDELLA 161 (185)
T ss_pred --------ccCcEEEEEEEEccc--c----ccCCCCCCceeEEEEEcHHHHHHHHH
Confidence 112234444433211 1 11122345777899999999999883
No 58
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.1e-15 Score=118.35 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=75.5
Q ss_pred eEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeec---cCceeeecCchh
Q 026407 72 NVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE---TPYWLTYDFPLK 144 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~---~~~~~~~~~~~~ 144 (239)
++.+++++.++ +|||+++... ++.|.+|||+++.||++.+||.||++||||+++..+... ....+.+. .
T Consensus 2 ~~~~~i~~~~g-~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~--~- 77 (133)
T cd04685 2 AARVVLLDPDD-RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFL--G- 77 (133)
T ss_pred eEEEEEEcCCC-eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEec--C-
Confidence 57789999888 8999887642 379999999999999999999999999999987333211 11111111 1
Q ss_pred hhhhcccccCCcccCceeEEEEEEEccccce-ecccCCCCCCCccceeEEeCHhHHHHh
Q 026407 145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEE-INLLGDGSEKPEFNEWRWMFPEQVLER 202 (239)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~~~~~Wv~~eel~~~ 202 (239)
....+...+|++........ ... ...+..++..++|++++++.+.
T Consensus 78 -----------~~~~~~~~~f~~~~~~~~~~~~~~--~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 78 -----------VDGRQEERFFLARTPRTEPSPAGW--TALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred -----------ccceeeEEEEEEEcCCccccCCCC--ChhhhhhcccccCCCHHHHhhC
Confidence 11123456777766542111 111 1122345678999999999875
No 59
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.65 E-value=9.9e-16 Score=125.05 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=78.7
Q ss_pred eeEEEEEEeCCCCEEEEEEecC--------CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407 71 RNVGICLINSSKKKIFAATRIH--------IPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFP 142 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~--------~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 142 (239)
.+|++++++.+++++||+++.. .+..|++|||++|+||++++||+||++||||+.+..+......+...
T Consensus 45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~--- 121 (185)
T TIGR00052 45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSP--- 121 (185)
T ss_pred CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCC---
Confidence 4677777876544899877643 23689999999999999999999999999999986554333221111
Q ss_pred hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407 143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206 (239)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 206 (239)
.+.....++|+......... .. ....++|..++.|++++++.+++.++
T Consensus 122 -------------g~~~~~~~~f~a~~~~~~~~-~~--~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 122 -------------GGVTELIHLFIAEVDDNQAA-GI--GGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred -------------CCCcEEEEEEEEEEchhhcC-CC--CCCCCccceEEEEeCHHHHHHHHHcC
Confidence 12234455666655432111 11 12234566789999999999988444
No 60
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.65 E-value=4.2e-16 Score=132.23 Aligned_cols=138 Identities=20% Similarity=0.155 Sum_probs=93.6
Q ss_pred cCCccccccccccccccccCCCCCCCCCCcCCCccccccccCCCCCCCCceeeEEEEEEeCCCCEEEEEEecCC-CCcEE
Q 026407 20 SYPTKLVKFASVPLELQQLPRKPLCCSCDDSSSSLSSFTALSTETPPDGYRRNVGICLINSSKKKIFAATRIHI-PYTWQ 98 (239)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~a~~~~~~~~~~~~~~~~~~~v~v~i~~~~~~~vLl~~r~~~-~~~w~ 98 (239)
=|+.|+.+......+..-.|+++. +..+++.+ ++|.+++++.+ ++||.++..+ +|++.
T Consensus 113 FCg~CG~~~~~~~~g~~~~C~~cg------------~~~fPR~d-------P~vIv~v~~~~--~ilLa~~~~h~~g~yS 171 (279)
T COG2816 113 FCGRCGTKTYPREGGWARVCPKCG------------HEHFPRID-------PCVIVAVIRGD--EILLARHPRHFPGMYS 171 (279)
T ss_pred CCCCCCCcCccccCceeeeCCCCC------------CccCCCCC-------CeEEEEEecCC--ceeecCCCCCCCccee
Confidence 477777777666666544444322 12233333 57777777765 4666665543 59999
Q ss_pred cCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecc
Q 026407 99 MPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINL 178 (239)
Q Consensus 99 ~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (239)
.-+|.||+|||+++|++||++||+|+++.++.....+ .|.+|+++|. -|.......++..
T Consensus 172 ~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ--PWPfP~SLMi------------------gf~aey~sgeI~~ 231 (279)
T COG2816 172 LLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ--PWPFPHSLML------------------GFMAEYDSGEITP 231 (279)
T ss_pred eeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc--CCCCchhhhh------------------hheeeeccccccC
Confidence 9999999999999999999999999999777544433 4777776644 2233333333444
Q ss_pred cCCCCCCCccceeEEeCHhHHHHhh
Q 026407 179 LGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 179 ~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
+ ..|+.+++|++.+|+...+
T Consensus 232 d-----~~Eleda~WFs~~evl~~L 251 (279)
T COG2816 232 D-----EGELEDARWFSRDEVLPAL 251 (279)
T ss_pred C-----cchhhhccccCHhHHhhhc
Confidence 3 2499999999999965544
No 61
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.65 E-value=1.5e-15 Score=119.32 Aligned_cols=111 Identities=25% Similarity=0.383 Sum_probs=71.5
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhh
Q 026407 71 RNVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQK 148 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (239)
..|++++...+ +|||+||...+ |.|.+|||++|.|||+++||+||++||||+++..+. ....++.+.+.
T Consensus 11 ~~v~~~i~~~~--~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~----~~~v~~~~~rd--- 81 (145)
T COG1051 11 VAVGALIVRNG--RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE----LLAVFDDPGRD--- 81 (145)
T ss_pred eeeeEEEEeCC--EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCccccee----EEEEecCCCCC---
Confidence 45666666554 89999998766 899999999999999999999999999999963221 12234433321
Q ss_pred cccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 149 LNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.++....++.+........ ...+.++...+.|++++++....
T Consensus 82 --------~r~~~v~~~~~~~~~~g~~-----~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 82 --------PRGHHVSFLFFAAEPEGEL-----LAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred --------CceeEEEEEEEEEecCCCc-----ccCChhhHhhcceecHhHccccc
Confidence 0112222222222211111 11122367889999999999754
No 62
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.65 E-value=1.9e-15 Score=116.40 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=69.1
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhh
Q 026407 70 RRNVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQ 147 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 147 (239)
+..|++++++. + ++||.+|... .|.|.+|||++|.||++++||.||++||||+++. +... ...+..+.
T Consensus 13 ~~~v~~ii~~~-~-~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~-~~~~---~~~~~~~~---- 82 (130)
T cd04511 13 KIIVGCVPEWE-G-KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVE-IDGL---YAVYSVPH---- 82 (130)
T ss_pred cEEEEEEEecC-C-EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEE-eeeE---EEEEecCC----
Confidence 34556666654 5 8999988643 3899999999999999999999999999999863 2211 11122211
Q ss_pred hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407 148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL 200 (239)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~ 200 (239)
......+|++..... ... ...|..+++|+++++|.
T Consensus 83 ----------~~~~~~~f~~~~~~~--~~~------~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 83 ----------ISQVYMFYRARLLDL--DFA------PGPESLEVRLFTEEEIP 117 (130)
T ss_pred ----------ceEEEEEEEEEEcCC--ccc------CCcchhceEEECHHHCC
Confidence 112344555555432 111 23477889999999996
No 63
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.65 E-value=2.4e-15 Score=124.35 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=78.7
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCC--------CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407 71 RNVGICLINSSKKKIFAATRIHIP--------YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFP 142 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~--------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 142 (239)
.+|+++.+++++++++|++...++ -.|++|+|.+|+||++++||+|||.||||+.+..+......+...+
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg-- 127 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPG-- 127 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCC--
Confidence 467777787654488887765443 3699999999999999999999999999999876654333322222
Q ss_pred hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407 143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205 (239)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 205 (239)
+..+..++|+......... . .....++.|..++.|++++++.+++.+
T Consensus 128 --------------~~~e~~~~fla~~~~~~~~-~-~~~~~de~E~i~v~~~~~~e~~~~~~~ 174 (202)
T PRK10729 128 --------------GTSERSSIMVGEVDATTAS-G-IHGLADENEDIRVHVVSREQAYQWVEE 174 (202)
T ss_pred --------------cCceEEEEEEEEEcchhcc-c-CCCCCCCCCceEEEEEcHHHHHHHHHc
Confidence 2234455555554222110 0 012234567788999999999998843
No 64
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.64 E-value=3.2e-15 Score=119.15 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=75.1
Q ss_pred CCceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCCCHHHHHHHHHHHHhCCccceee--eccCceeee
Q 026407 67 DGYRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGEDLINAALRELREETGVTSAEFL--AETPYWLTY 139 (239)
Q Consensus 67 ~~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~ 139 (239)
..++.++++++++.++ ++||+||... +|.|++| ||+++.|| .+||+||++||||+++..+. .........
T Consensus 24 g~~h~~v~v~v~~~~g-~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~ 100 (158)
T TIGR02150 24 TPLHRAFSVFLFNEEG-QLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRA 100 (158)
T ss_pred CCeEEEEEEEEEcCCC-eEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEE
Confidence 4578888899998887 9999999753 4999997 89999999 49999999999999874331 111111111
Q ss_pred cCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407 140 DFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR 204 (239)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 204 (239)
.+++ . ......+|.+.... .... ..+|+.++.|++++++.+++.
T Consensus 101 ~~~~------------g-~~~~~~~f~~~~~~---~~~~-----~~~Ev~~~~W~~~~el~~~~~ 144 (158)
T TIGR02150 101 RDAW------------G-EHELCPVFFARAPV---PLNP-----NPEEVAEYRWVSLEELKEILK 144 (158)
T ss_pred ecCC------------C-cEEEEEEEEEecCC---cccC-----ChhHeeeEEEeCHHHHHHHHh
Confidence 1111 0 01122333333221 1222 245999999999999999873
No 65
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=3.8e-15 Score=113.73 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=46.6
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 71 RNVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
..+++++++.++ ++|+++|...+ |.|+||||+++.||++++|+.||+.||||+++
T Consensus 5 ~~~~~ii~~~~~-~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~ 62 (128)
T TIGR00586 5 QIAVGIIRNENG-EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQ 62 (128)
T ss_pred EEEEEEEECCCC-EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc
Confidence 344555567666 89999997543 89999999999999999999999999999986
No 66
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.61 E-value=1.3e-14 Score=128.99 Aligned_cols=114 Identities=25% Similarity=0.377 Sum_probs=72.7
Q ss_pred eEEEEEEeCCCCEEEEEEecCCC--CcEEcCceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeeecCchhhhh
Q 026407 72 NVGICLINSSKKKIFAATRIHIP--YTWQMPQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTYDFPLKVKQ 147 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~~~~~~~~~ 147 (239)
.|.++++. ++ +|||++|...+ |.|.+|||++|+|||+++||+||++||||+++. .+.........+.+++..
T Consensus 205 tv~avv~~-~g-~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~-- 280 (340)
T PRK05379 205 TVDAVVVQ-SG-HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRS-- 280 (340)
T ss_pred EEEEEEEE-CC-EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCC--
Confidence 44455554 45 89999987543 899999999999999999999999999999863 222222222233343321
Q ss_pred hcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407 148 KLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLER 202 (239)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~ 202 (239)
.......++|.+.+.... .. .....+|..+++|++++++..+
T Consensus 281 --------~~~~~i~~~f~~~~~~~~-~~----~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 281 --------LRGRTITHAFLFEFPAGE-LP----RVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred --------CCCcEEEEEEEEEecCCc-cC----ccCCCCceeeEEEEEHHHhhhh
Confidence 001123445555554321 11 1123347889999999999874
No 67
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.59 E-value=1.4e-14 Score=109.14 Aligned_cols=105 Identities=27% Similarity=0.332 Sum_probs=67.9
Q ss_pred EEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhc
Q 026407 73 VGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKL 149 (239)
Q Consensus 73 v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (239)
+.+++++.++ ++||++|... +|.|.||||+++.+|++++||.||+.||||+++...... ....+.+++
T Consensus 4 ~~~~i~~~~~-~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~--~~~~~~~~~------ 74 (124)
T cd03425 4 VAAIIIDDDG-RILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELL--ATVEHDYPD------ 74 (124)
T ss_pred EEEEEECCCC-EEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceE--EEEEeeCCC------
Confidence 4445566656 9999988753 489999999999999999999999999999986432111 112233322
Q ss_pred ccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 150 NRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.....+++......... ...|..++.|++++++.++.
T Consensus 75 ----------~~~~~~~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~~ 111 (124)
T cd03425 75 ----------KRVTLHVFLVELWSGEP-------QLLEHQELRWVPPEELDDLD 111 (124)
T ss_pred ----------CeEEEEEEEEeeeCCCc-------ccccCceEEEeeHHHcccCC
Confidence 12222233222111111 12367889999999998865
No 68
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.57 E-value=3.7e-14 Score=108.48 Aligned_cols=134 Identities=24% Similarity=0.345 Sum_probs=86.6
Q ss_pred CCCceeeEEEEEEeCCCC--EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407 66 PDGYRRNVGICLINSSKK--KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL 143 (239)
Q Consensus 66 ~~~~~~~v~v~i~~~~~~--~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 143 (239)
+.++|..++++.+..++. +|||+.-..++..|-+|+|++|+||+..+||.||++||.|+.. .+......+..+....
T Consensus 5 ~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G-~l~~~~~g~~~~~~~~ 83 (145)
T KOG2839|consen 5 PAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKG-KLGRLLGGFEDFLSKK 83 (145)
T ss_pred CCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcee-eeeccccchhhccChh
Confidence 367889999988877775 8999988887789999999999999999999999999999985 3333222222222111
Q ss_pred hhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHhhhh
Q 026407 144 KVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYFSPF 217 (239)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l~~~ 217 (239)
. .....-+++.+... ..... .+....++.+.+|+.++|..+...+.-. .++.++..+
T Consensus 84 ~--------------~~~~k~~~~~l~v~-e~le~--wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~ 141 (145)
T KOG2839|consen 84 H--------------RTKPKGVMYVLAVT-EELED--WPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQF 141 (145)
T ss_pred h--------------cccccceeehhhhh-hhccc--ChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 00111122222211 11111 1223346889999999999998865544 555554443
No 69
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.57 E-value=4.4e-14 Score=114.80 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=76.7
Q ss_pred CCceeeEEEE--EEeCC-CCEEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCccceeee-ccCcee
Q 026407 67 DGYRRNVGIC--LINSS-KKKIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTSAEFLA-ETPYWL 137 (239)
Q Consensus 67 ~~~~~~v~v~--i~~~~-~~~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~ 137 (239)
.-++.+|.+. +.|.+ +.+++++||... ||+| .+|||++++||++++||+||++||||++...+.. ......
T Consensus 29 g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~ 108 (180)
T cd03676 29 GLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVV 108 (180)
T ss_pred CceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEE
Confidence 3466677754 44554 239999999754 5999 5999999999999999999999999998754321 000111
Q ss_pred eecCc-hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407 138 TYDFP-LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205 (239)
Q Consensus 138 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 205 (239)
.+.+. .. ..+..+..++|.+.+... .... .+++|+.++.|++++|+.+++..
T Consensus 109 ~~~~~~~~----------~~~~~e~~~~f~~~~~~~-~~~~-----~~~~Ev~~~~~~~~~el~~~l~~ 161 (180)
T cd03676 109 SYLREGEA----------GGLQPEVEYVYDLELPPD-FIPA-----PQDGEVESFRLLTIDEVLRALKE 161 (180)
T ss_pred EEEEEcCC----------CcEeeeEEEEEEEEcCCC-CeeC-----CCCCcEeEEEEECHHHHHHHHHc
Confidence 22211 00 011122233343333221 1111 23468999999999999998843
No 70
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.56 E-value=6.3e-14 Score=114.91 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=78.3
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCC---------CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecC
Q 026407 71 RNVGICLINSSKKKIFAATRIHIP---------YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDF 141 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~---------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 141 (239)
.+|+|++++.++++++|++....+ -.|++|+|.+|+| ++++||+||+.||||+.+..+......+.+.++
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~ 124 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG 124 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCcc
Confidence 467777787755488887764432 4689999999976 699999999999999998777654443333222
Q ss_pred chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcch
Q 026407 142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKP 206 (239)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 206 (239)
..+..+.|+....... ... ....+++|..++.|++++++.+++.++
T Consensus 125 ----------------s~e~~~lf~a~~~~~~-~~~--~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 125 ----------------VTELIHFFIAEYSDSQ-RAN--AGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred ----------------cCcEEEEEEEEECchh-ccc--CCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 3344555555543211 111 112245688899999999999998433
No 71
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.56 E-value=5.4e-14 Score=105.23 Aligned_cols=111 Identities=25% Similarity=0.387 Sum_probs=70.9
Q ss_pred eEEEEEEeCCCCEEEEEEecCC-CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhcc
Q 026407 72 NVGICLINSSKKKIFAATRIHI-PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLN 150 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (239)
++++++++.++ ++||++|... +|.|.+|||+++.||++.++|+||++||+|+......... ...+..+.
T Consensus 2 ~~~~i~~~~~~-~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~--~~~~~~~~------- 71 (123)
T cd02883 2 AVGAVILDEDG-RVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLG--VYEVESPD------- 71 (123)
T ss_pred ceEEEEECCCC-CEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEE--EEEeeccC-------
Confidence 45677777765 8999888763 4999999999999999999999999999999864221111 11111110
Q ss_pred cccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 151 RRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.+.....++|.+........ .....|...++|++++++.++.
T Consensus 72 -------~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~w~~~~~l~~~~ 113 (123)
T cd02883 72 -------EGEHAVVFVFLARLVGGEPT----LLPPDEISEVRWVTLDELPALA 113 (123)
T ss_pred -------CCceEEEEEEEEEeCCCCcC----CCCCCccceEEEEcHHHCcccc
Confidence 11223333333332211111 1233477889999999998754
No 72
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.54 E-value=8.8e-14 Score=113.97 Aligned_cols=113 Identities=16% Similarity=0.058 Sum_probs=71.4
Q ss_pred ceeeEEEEEE-eCCCCEEEEEEecC----CCCcEEcCceecCCC-CCHHHHHHHHHHHHhCCccceeeeccCceeeecCc
Q 026407 69 YRRNVGICLI-NSSKKKIFAATRIH----IPYTWQMPQGGADEG-EDLINAALRELREETGVTSAEFLAETPYWLTYDFP 142 (239)
Q Consensus 69 ~~~~v~v~i~-~~~~~~vLl~~r~~----~~~~w~~PgG~ve~g-Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 142 (239)
.+.+++++.+ +.++..+|+++|.. +.|.|+||||++|++ |++++||+||++||||++...+.........+..
T Consensus 29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~- 107 (190)
T PRK10707 29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSS- 107 (190)
T ss_pred CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeecc-
Confidence 4455555544 33334888888652 248999999999985 6899999999999999998555332222111111
Q ss_pred hhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 143 LKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.+.....+++.+.... .. ..+.+|+.++.|++++++.+..
T Consensus 108 ---------------~~~~~~~~v~~~~~~~-~~-----~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 108 ---------------TGYQVTPVVGIIPPDL-PY-----RANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred ---------------CCcEEEEEEEEECCCC-CC-----CCChhhhheEEEEeHHHHhCcc
Confidence 1223333444333221 11 1234589999999999998764
No 73
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.54 E-value=4.8e-14 Score=107.57 Aligned_cols=56 Identities=32% Similarity=0.470 Sum_probs=43.9
Q ss_pred eEEEEEEe--CCCCEEEEEEec------CCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 72 NVGICLIN--SSKKKIFAATRI------HIPYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~--~~~~~vLl~~r~------~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
++++++++ .+..+|||++|. ...+.|++|||+++.||++++||+||++||||+++.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 34555553 333368888752 223899999999999999999999999999999863
No 74
>PRK08999 hypothetical protein; Provisional
Probab=99.48 E-value=4.3e-13 Score=117.93 Aligned_cols=119 Identities=21% Similarity=0.277 Sum_probs=73.8
Q ss_pred eeeEEEEEEeCCCCEEEEEEecCC---CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhh
Q 026407 70 RRNVGICLINSSKKKIFAATRIHI---PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVK 146 (239)
Q Consensus 70 ~~~v~v~i~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 146 (239)
+..+.+++++.++ ++||++|... +|+|+||||+++.||++.+|+.||++||||+.+...... ....+.+++
T Consensus 5 ~~~~~~vi~~~~~-~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l--~~~~h~~~~--- 78 (312)
T PRK08999 5 IHVAAGVIRDADG-RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPL--ITVRHDYPD--- 78 (312)
T ss_pred eEEEEEEEECCCC-eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeE--EEEEEEcCC---
Confidence 3445555666666 8999998654 389999999999999999999999999999986432111 112233322
Q ss_pred hhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcchHH-HHHHHh
Q 026407 147 QKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRKPCG-LIFRYF 214 (239)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~l 214 (239)
......++.+...... ....|..+++|++++++.++...+.. ++++.+
T Consensus 79 -------------~~~~i~~y~~~~~~~~-------~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 79 -------------KRVRLDVRRVTAWQGE-------PHGREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred -------------CeEEEEEEEEEEecCc-------ccCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 1122222222211111 11236678899999999986533333 444443
No 75
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.47 E-value=4.9e-13 Score=101.41 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=45.2
Q ss_pred eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceee
Q 026407 72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFL 130 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~ 130 (239)
.|.+++++. + ++||+++.. +.|++|||+++.||++++||+||++||||+.+..+.
T Consensus 2 ~v~vi~~~~-~-~vLl~~~~~--~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~ 56 (118)
T cd04665 2 SVLVICFYD-D-GLLLVRHKD--RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLT 56 (118)
T ss_pred EEEEEEEEC-C-EEEEEEeCC--CEEECCccccCCCCCHHHHHHHHHHHHHCCccCceE
Confidence 345555554 4 888888864 789999999999999999999999999999985443
No 76
>PLN02709 nudix hydrolase
Probab=99.47 E-value=6.8e-13 Score=110.34 Aligned_cols=108 Identities=24% Similarity=0.262 Sum_probs=72.0
Q ss_pred eEEEEEEeC-----CCCEEEEEEecC----CCCcEEcCceecCCCC-CHHHHHHHHHHHHhCCccc--eeeeccCceeee
Q 026407 72 NVGICLINS-----SKKKIFAATRIH----IPYTWQMPQGGADEGE-DLINAALRELREETGVTSA--EFLAETPYWLTY 139 (239)
Q Consensus 72 ~v~v~i~~~-----~~~~vLl~~r~~----~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~ 139 (239)
+|.+.++.. ++.++||++|.. ++|.|.||||++|++| ++.+||+||++||+||+.. .+++....+.+
T Consensus 35 AVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t- 113 (222)
T PLN02709 35 AVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN- 113 (222)
T ss_pred EEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC-
Confidence 444555542 234899999865 4599999999999975 8999999999999999873 44444432211
Q ss_pred cCchhhhhhcccccCCcccCceeEEEEEEEccc-cceecccCCCCCCCccceeEEeCHhHHHHh
Q 026407 140 DFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGK-EEEINLLGDGSEKPEFNEWRWMFPEQVLER 202 (239)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~ 202 (239)
..+..++-|+..+... ...... ..+|+.++.|++++.+.+.
T Consensus 114 -----------------~sg~~V~P~V~~~~~~~~~~~~~-----np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 114 -----------------KKGMSVAPVIGFLHDKKAFKPLP-----NPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred -----------------CCCCEEEEEEEEecCCCCccccC-----ChhhhheeEEecHHHHhCC
Confidence 0133455555555421 111122 2359999999999999864
No 77
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.46 E-value=2.1e-12 Score=102.26 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=46.1
Q ss_pred eeEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeec
Q 026407 71 RNVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAE 132 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~ 132 (239)
..|.++++.. + ++||.++.. ..|++|||++|+|||+++||.||++||||+.+..+...
T Consensus 25 ~~V~ii~~~~-~-~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~l 82 (156)
T TIGR02705 25 NHVLVIPRYK-D-QWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYI 82 (156)
T ss_pred CEEEEEEEEC-C-EEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEE
Confidence 3555555554 4 788877765 56999999999999999999999999999988655433
No 78
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.44 E-value=1.6e-12 Score=99.44 Aligned_cols=52 Identities=29% Similarity=0.383 Sum_probs=40.7
Q ss_pred EEEEEEeCCC-CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 73 VGICLINSSK-KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 73 v~v~i~~~~~-~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
|.+++.+.++ .+||+.+... +.|++|||++++||++++||+||++||||+++
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 4444444433 3666665554 56999999999999999999999999999986
No 79
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=2.2e-12 Score=97.78 Aligned_cols=54 Identities=30% Similarity=0.238 Sum_probs=40.7
Q ss_pred eEEEEEEeCCCCEEEEEEecCC--CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc
Q 026407 72 NVGICLINSSKKKIFAATRIHI--PYTWQMPQGGADEGEDLINAALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 127 (239)
.+++++...++ +||.+|... .|.|+||||++|.||++++||.||+.||||+++.
T Consensus 6 ~av~vl~~~~~--~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 6 VVVALLPVDDG--LLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEEEECCC--EEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence 34444444443 444455432 3899999999999999999999999999999874
No 80
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.36 E-value=9.4e-12 Score=105.52 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=47.5
Q ss_pred CCCceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcC-ceecCCCC-----------------CHHHHHHHHHHHHhC
Q 026407 66 PDGYRRNVGICLINSSKKKIFAATRIHI----PYTWQMP-QGGADEGE-----------------DLINAALRELREETG 123 (239)
Q Consensus 66 ~~~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~P-gG~ve~gE-----------------s~~~aa~REl~EEtG 123 (239)
...+++++.++|+|.++ ++||+||... ||.|... +|++..|| +..+||+||+.||||
T Consensus 52 ~gl~Hra~~v~i~n~~g-~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElG 130 (247)
T PLN02552 52 RGLLHRAFSVFLFNSKY-ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELG 130 (247)
T ss_pred CCceEEEEEEEEEcCCC-eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhC
Confidence 34588899999999988 9999999754 4899665 45444432 168999999999999
Q ss_pred Cccc
Q 026407 124 VTSA 127 (239)
Q Consensus 124 l~~~ 127 (239)
|+..
T Consensus 131 I~~~ 134 (247)
T PLN02552 131 IPAE 134 (247)
T ss_pred CCcc
Confidence 9863
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=99.36 E-value=1.4e-11 Score=106.57 Aligned_cols=121 Identities=17% Similarity=0.298 Sum_probs=71.6
Q ss_pred eEEEEEE-eCCCC-EEEEEEecCCC---CcEEcCceecCC-CCCHHHHHHHHHHHHhCCcc--ceeeeccCce------e
Q 026407 72 NVGICLI-NSSKK-KIFAATRIHIP---YTWQMPQGGADE-GEDLINAALRELREETGVTS--AEFLAETPYW------L 137 (239)
Q Consensus 72 ~v~v~i~-~~~~~-~vLl~~r~~~~---~~w~~PgG~ve~-gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~------~ 137 (239)
+|+|+++ +.++. +++|+++...+ ..|+||||.+|+ ||++++||+||++||||+.+ ..+....... .
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~ 209 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCR 209 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCce
Confidence 5555544 54442 48887776543 679999999997 48999999999999999975 3444332110 1
Q ss_pred eecCchhhhhhcccccCCcccCceeEEEEEEEccccceec---cc-CCCCCCCccceeEEeCHhHHHHhhcc
Q 026407 138 TYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEIN---LL-GDGSEKPEFNEWRWMFPEQVLERVRK 205 (239)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~E~~~~~Wv~~eel~~~~~~ 205 (239)
.+..+ .+..+..+.|++........+. .. ....++.|..++.|++++++.++..+
T Consensus 210 v~psp-------------G~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD 268 (291)
T PLN03143 210 MFPSP-------------GGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD 268 (291)
T ss_pred EEecC-------------CccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh
Confidence 11111 1222334444433332211110 00 11234567789999999999988743
No 82
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.34 E-value=4.2e-11 Score=96.00 Aligned_cols=116 Identities=25% Similarity=0.304 Sum_probs=81.0
Q ss_pred eeEEEE-EEeCCCC-EEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccC-ceeeecCchh
Q 026407 71 RNVGIC-LINSSKK-KIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETP-YWLTYDFPLK 144 (239)
Q Consensus 71 ~~v~v~-i~~~~~~-~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~-~~~~~~~~~~ 144 (239)
..|+++ ++..+|. .++|++....| -..++|+|.++.||+++.||+|||+||||+. ..+....+ -+...++
T Consensus 74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~~f~DPGl--- 149 (225)
T KOG3041|consen 74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPTVFLDPGL--- 149 (225)
T ss_pred CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeeccccEEcCCCC---
Confidence 455554 4444553 67777765544 3579999999999999999999999999998 44432222 2333333
Q ss_pred hhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 145 VKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.+-..+..++.+.+...+-...-...++.|+.++.-++..+|.+..
T Consensus 150 -------------tn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~ 195 (225)
T KOG3041|consen 150 -------------TNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWREL 195 (225)
T ss_pred -------------CCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHH
Confidence 3345667778887765543333345778899999999999998865
No 83
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.32 E-value=1.9e-11 Score=93.76 Aligned_cols=56 Identities=32% Similarity=0.493 Sum_probs=44.3
Q ss_pred eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHH-HHHHHHHHHhCCccc
Q 026407 72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLIN-AALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~-aa~REl~EEtGl~~~ 127 (239)
.+.+++......++|+.+|....+.|.||||++|.||++.+ ||+||++||||++..
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 34444443331489998888754699999999999998888 999999999999875
No 84
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.31 E-value=2.2e-11 Score=99.04 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=37.6
Q ss_pred EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 84 KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 84 ~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
++|+++|.. .|.|.||||++++||++.+||.||+.||||+..
T Consensus 50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 778888865 489999999999999999999999999997653
No 85
>PLN02791 Nudix hydrolase homolog
Probab=99.30 E-value=3.7e-11 Score=115.61 Aligned_cols=121 Identities=19% Similarity=0.299 Sum_probs=77.9
Q ss_pred CCceeeEEEEEEeCCCCEEEEEEecC----CCCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccc--eeeeccCceeee
Q 026407 67 DGYRRNVGICLINSSKKKIFAATRIH----IPYTWQM-PQGGADEGEDLINAALRELREETGVTSA--EFLAETPYWLTY 139 (239)
Q Consensus 67 ~~~~~~v~v~i~~~~~~~vLl~~r~~----~~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~~~~~~~~~~ 139 (239)
..+|.++.+++++.++.++||+||.. .||.|.+ ||||++.||+..+||+||++||+||++. .+.... ...+
T Consensus 29 Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~--~~~~ 106 (770)
T PLN02791 29 GDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLF--VFLQ 106 (770)
T ss_pred CCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeee--eEEE
Confidence 44888999999997433999999975 3599999 7999999999999999999999999852 111111 1111
Q ss_pred cCchhhhhhcccccCCccc-CceeEEEEEEEcccc--ceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 140 DFPLKVKQKLNRRWGTNYK-GQAQKWFLFKFTGKE--EEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
... ...+.+. ....+.|++...... ..+.+ ..+|+.+++|++++|+.+++
T Consensus 107 ~~~---------~~~g~~~e~E~~~VYlv~~~~~~p~~~~~l-----q~eEV~~v~wvsl~El~~~l 159 (770)
T PLN02791 107 ECV---------INDGKFINNEYNDVYLVTTLDPIPLEAFTL-----QESEVSAVKYMSIEEYKSAL 159 (770)
T ss_pred Eee---------ccCCCcceeeEEEEEEEEECCCCCcccCCC-----ChhhhheeEEEcHHHHHHHH
Confidence 100 0001111 122334443322211 11222 34599999999999999876
No 86
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.05 E-value=5.8e-09 Score=77.95 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=40.9
Q ss_pred EEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCC
Q 026407 74 GICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGV 124 (239)
Q Consensus 74 ~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl 124 (239)
.++++..++ ++||.||...+ |+|+||+|.++.+|+.+++..||+.||.++
T Consensus 6 ~~~ii~~~~-~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~ 58 (118)
T cd03431 6 AVVVIRNDG-RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL 58 (118)
T ss_pred EEEEEecCC-eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc
Confidence 334444455 89999997654 999999999999999999999999998764
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.00 E-value=3.1e-09 Score=87.75 Aligned_cols=56 Identities=27% Similarity=0.316 Sum_probs=44.2
Q ss_pred eEEEEEEeC--CCCEEEEEEecC----CCCcEEcCceecCCCC-CHHHHHHHHHHHHhCCccc
Q 026407 72 NVGICLINS--SKKKIFAATRIH----IPYTWQMPQGGADEGE-DLINAALRELREETGVTSA 127 (239)
Q Consensus 72 ~v~v~i~~~--~~~~vLl~~r~~----~~~~w~~PgG~ve~gE-s~~~aa~REl~EEtGl~~~ 127 (239)
+|.+.+++. ++..|||+||.. +.|...||||+.|+.+ +.++||.||..||+|++..
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~ 107 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPE 107 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHH
Confidence 455555555 224789999864 3599999999999865 8889999999999999973
No 88
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.9e-09 Score=91.25 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=79.4
Q ss_pred CceeeEEEEEEeCCCCEEEEEEecCC----CCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCch
Q 026407 68 GYRRNVGICLINSSKKKIFAATRIHI----PYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPL 143 (239)
Q Consensus 68 ~~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 143 (239)
..+..++..++|..+ +||+++-... .|.|.+|+|.++++|++-++|+||++||||++..... ...+--.+.-
T Consensus 113 sh~vgvg~~V~n~~~-eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~e-Vla~r~~H~~-- 188 (295)
T KOG0648|consen 113 SHRVGVGAFVLNKKK-EVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVE-VLAFRRAHNA-- 188 (295)
T ss_pred hhheeeeeeEecCCc-eeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhh-HHHHHhhhcc--
Confidence 356688889999985 9999765322 3999999999999999999999999999999753211 1111001110
Q ss_pred hhhhhcccccCCcc-cCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 144 KVKQKLNRRWGTNY-KGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 144 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
.+ ......++++.+.....++.. ...|+.++.|++.++.....
T Consensus 189 ------------~~~~~ksd~f~~c~L~p~s~~i~~-----~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 189 ------------TFGLIKSDMFFTCELRPRSLDITK-----CKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred ------------hhhcccccceeEEEeeccccccch-----hHHHHHHHhcccHHHhhccc
Confidence 11 123466788888665444443 34488888999999887655
No 89
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.85 E-value=3.5e-08 Score=74.00 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=71.1
Q ss_pred eeEEEEEEeCCCC--EEEEEEecC------CCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccc-eeeeccCceeeecC
Q 026407 71 RNVGICLINSSKK--KIFAATRIH------IPYTWQMPQGGADEGEDLINAALRELREETGVTSA-EFLAETPYWLTYDF 141 (239)
Q Consensus 71 ~~v~v~i~~~~~~--~vLl~~r~~------~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~ 141 (239)
..++++++..... .|||+.-.. ..|-|.+|.|.+..||++..||+||.-||+||.+. ....... +..
T Consensus 4 ~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~----~kQ 79 (161)
T COG4119 4 LSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGS----LKQ 79 (161)
T ss_pred ccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhh----hcc
Confidence 4556666544322 344433211 12899999999999999999999999999999872 2211111 111
Q ss_pred chhhhhhcccccCCcccCceeEEEEEEEccccce-------ec---ccCCCCCCCccceeEEeCHhHHHHhh---cchHH
Q 026407 142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEE-------IN---LLGDGSEKPEFNEWRWMFPEQVLERV---RKPCG 208 (239)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~E~~~~~Wv~~eel~~~~---~~~~~ 208 (239)
+ -|..+..|-.+.+.+..+ .. -++....-+|++.+.|+++.+....+ .+++.
T Consensus 80 ~---------------GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~gQRpfl 144 (161)
T COG4119 80 S---------------GGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKGQRPFL 144 (161)
T ss_pred C---------------CCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhccchHH
Confidence 0 112233333332221111 11 11223345599999999999998755 66655
Q ss_pred -HHHHH
Q 026407 209 -LIFRY 213 (239)
Q Consensus 209 -~~~~~ 213 (239)
+++..
T Consensus 145 drL~a~ 150 (161)
T COG4119 145 DRLMAH 150 (161)
T ss_pred HHHHHH
Confidence 54443
No 90
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.82 E-value=1.2e-08 Score=80.66 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=78.2
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCC----CCcEEc-CceecCCCCCHHHHHHHHHHHHhCCccce--eeeccCceeeecC
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHI----PYTWQM-PQGGADEGEDLINAALRELREETGVTSAE--FLAETPYWLTYDF 141 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~----~~~w~~-PgG~ve~gEs~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~ 141 (239)
.+.+..++++|.+| ++||+||... ++.|.- ..||--+||+..+|++|-+.+|+||.+.. .....+ .+.|
T Consensus 32 LHrAFS~~lFne~g-~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~---rf~Y 107 (185)
T COG1443 32 LHRAFSSFLFNERG-QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILP---RFRY 107 (185)
T ss_pred HHhhhheeEECCCC-ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcccccc---ceEE
Confidence 46788999999999 9999999753 377743 57888899999999999999999999852 222222 2222
Q ss_pred chhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhcc
Q 026407 142 PLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVRK 205 (239)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 205 (239)
.... ..-.++....+++.+.... .++.+ .+|+.+++|++++++.+++..
T Consensus 108 rA~~---------~~~~~E~Eic~V~~~~~~~-~~~~n-----pdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 108 RAAD---------PDGIVENEICPVLAARLDS-ALDPN-----PDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred eccC---------CCCcceeeeeeEEEEeecC-CCCCC-----hHHhhheeccCHHHHHHhhcC
Confidence 1100 0011222333344443332 22332 359999999999999998843
No 91
>PLN02839 nudix hydrolase
Probab=98.48 E-value=1.4e-06 Score=77.22 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=67.8
Q ss_pred CEEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCccc---eeeeccCceeeecCchhhhhhcccccC
Q 026407 83 KKIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTSA---EFLAETPYWLTYDFPLKVKQKLNRRWG 154 (239)
Q Consensus 83 ~~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (239)
.++.+.||... ||+| .+.||++..||++.++++||.+||.||... .+.. .+.++|.+.+..
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~--~G~VsY~~~~~~--------- 286 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA--VGAVSYMDIDQY--------- 286 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE--eEEEEEEEEcCC---------
Confidence 37888998643 4999 457999999999999999999999999853 2222 123333321110
Q ss_pred CcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 155 TNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
. -+....|+|.+.-.. ++.+ ...+.|++++.+++++|+.+.+
T Consensus 287 -g--~~~evly~YDLeLP~-df~P---~~qDGEVe~F~Lm~v~EV~~~l 328 (372)
T PLN02839 287 -C--FKRDVLFCYDLELPQ-DFVP---KNQDGEVESFKLIPVAQVANVI 328 (372)
T ss_pred -c--cccCEEEEeeeecCC-cccc---CCCccceeEEEEecHHHHHHHH
Confidence 1 122334455555322 1211 2346799999999999999876
No 92
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.26 E-value=3e-06 Score=63.39 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=51.7
Q ss_pred EEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407 75 ICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR 151 (239)
Q Consensus 75 v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (239)
+++++.++ ++||.||...+ |+|+||.-.++...+ .+.+.+.+.+..|+.+.... ....+.+.+++
T Consensus 2 ~~i~~~~~-~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~--~~~~v~H~fSH-------- 69 (114)
T PF14815_consen 2 LLIIRSQG-RVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSVE--PLGTVKHVFSH-------- 69 (114)
T ss_dssp EEEEETTS-EEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-S---SEEEEEE-SS--------
T ss_pred EEEEEeCC-EEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhhe--ecCcEEEEccc--------
Confidence 46677777 99999999876 999999988874334 55555666677777653222 11233444433
Q ss_pred ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
...+..++.+....... .+..+.+|++++++.++.
T Consensus 70 --------~~~~~~~~~~~~~~~~~---------~~~~~~~W~~~~~l~~~~ 104 (114)
T PF14815_consen 70 --------RRWTIHVYEVEVSADPP---------AEPEEGQWVSLEELDQYP 104 (114)
T ss_dssp --------EEEEEEEEEEEEE-SS-------------TTEEEEEGGGGGGS-
T ss_pred --------eEEEEEEEEEEecCCCC---------CCCCCcEEEEHHHHhhCC
Confidence 23333333333221100 034689999999999764
No 93
>PRK10880 adenine DNA glycosylase; Provisional
Probab=97.90 E-value=0.00012 Score=65.40 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=45.9
Q ss_pred CCCCCCCCCcCCCccccc--cccCCCCCCCC-ceeeEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCCCCCHHHH
Q 026407 40 RKPLCCSCDDSSSSLSSF--TALSTETPPDG-YRRNVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADEGEDLINA 113 (239)
Q Consensus 40 ~~~~~c~~~~~~~a~~~~--~~~~~~~~~~~-~~~~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gEs~~~a 113 (239)
|+|..||+...|.+.... ...|....+.. ......++++..++ ++||.+|...+ |+|+||+. +..+
T Consensus 197 P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~~~~~~~~~~~~~~~-~~~l~~r~~~gl~~gl~~fP~~--~~~~----- 268 (350)
T PRK10880 197 PKCELCPLQNGCIAYANHSWALYPGKKPKQTLPERTGYFLLLQHGD-EVWLEQRPPSGLWGGLFCFPQF--ADEE----- 268 (350)
T ss_pred CCCCCCccHhhhHHHHcCCHhhCCCCCCCCCCCeEEEEEEEEEECC-EEEEEECCccChhhccccCCCC--cchh-----
Confidence 344449999988875532 22333333222 22233334444445 89999998765 99999963 2111
Q ss_pred HHHHHHHHhCCcc
Q 026407 114 ALRELREETGVTS 126 (239)
Q Consensus 114 a~REl~EEtGl~~ 126 (239)
..++..|+.|+..
T Consensus 269 ~~~~~~~~~~~~~ 281 (350)
T PRK10880 269 ELRQWLAQRGIAA 281 (350)
T ss_pred hHHHHHHhcCCch
Confidence 2455667888753
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.81 E-value=4.7e-06 Score=72.22 Aligned_cols=107 Identities=21% Similarity=0.378 Sum_probs=75.1
Q ss_pred eEEEEEEeCCCCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCccceeeeccCceeeecCchhhhhhccc
Q 026407 72 NVGICLINSSKKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTSAEFLAETPYWLTYDFPLKVKQKLNR 151 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (239)
..+.+++|....++||++.... ..|.||.|++..+|+..+||.||+.||||.+....+..-. +-..
T Consensus 84 v~ga~ild~~~sr~llv~g~qa-~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e------~Ie~------- 149 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGWQA-SSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNE------GIET------- 149 (348)
T ss_pred CchHhhhhhhhhhhheeeceec-ccccccCccccccchhhhcchhcccchhhcCHHHHhcccc------Cccc-------
Confidence 4456788887778898887654 4599999999999999999999999999999854322111 1110
Q ss_pred ccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHH
Q 026407 152 RWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVL 200 (239)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~ 200 (239)
.+.+ +.+.+|...+...++++.+ ....|++...|..++++.
T Consensus 150 ----nI~d--q~~~~fIi~gvs~d~~f~~--~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 150 ----NIRD--QLVRLFIINGVSEDTNFNP--RVRKEISKIHWHYLDHLV 190 (348)
T ss_pred ----chhh--ceeeeeeeccceeeeecch--hhhccccceeeeehhhhc
Confidence 1122 3344555666555555533 345688999999999994
No 95
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=4.2e-05 Score=62.02 Aligned_cols=121 Identities=21% Similarity=0.338 Sum_probs=73.2
Q ss_pred CceeeEEEEEEeCCCCEEEEEEecCCC----CcEEc-----C---ceecCC--CCCHHHHHHHHHHHHhCCccceeee-c
Q 026407 68 GYRRNVGICLINSSKKKIFAATRIHIP----YTWQM-----P---QGGADE--GEDLINAALRELREETGVTSAEFLA-E 132 (239)
Q Consensus 68 ~~~~~v~v~i~~~~~~~vLl~~r~~~~----~~w~~-----P---gG~ve~--gEs~~~aa~REl~EEtGl~~~~~~~-~ 132 (239)
..+++..|++++.++ ++||++|+... +.|.- | .|..+. +.....||.|-|.-|+||....+.. .
T Consensus 50 lLHRaFSVFlFns~~-~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee 128 (225)
T KOG0142|consen 50 LLHRAFSVFLFNSKN-ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEE 128 (225)
T ss_pred hhhheeeEEEecCcc-hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHH
Confidence 467788999999988 99999998642 44421 1 122222 2367889999999999998754421 1
Q ss_pred cCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhhc
Q 026407 133 TPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERVR 204 (239)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 204 (239)
..+.-.+.|.... ...| |+....|++.+... +.+++ ..+|+.+++|++.+|+.+++.
T Consensus 129 ~~~ltrihYkA~s----dg~w-----GEhEiDYiL~~~~~---~~~nP---npnEv~e~ryvs~eelkel~~ 185 (225)
T KOG0142|consen 129 FNFLTRIHYKAPS----DGIW-----GEHEIDYILFLVKD---VTLNP---NPNEVSEIRYVSREELKELVA 185 (225)
T ss_pred cccceeeeeecCC----CCCc-----ccceeeEEEEEecc---CCCCC---ChhhhhHhheecHHHHHHHHh
Confidence 1111122222211 1223 34444444444442 23322 234999999999999999883
No 96
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.64 E-value=0.00033 Score=60.11 Aligned_cols=121 Identities=22% Similarity=0.198 Sum_probs=80.0
Q ss_pred CceeeEEEEEEeCCCCEEEEEEecCC---------------------------C---CcEEcCceecCCCCCHHHHHHHH
Q 026407 68 GYRRNVGICLINSSKKKIFAATRIHI---------------------------P---YTWQMPQGGADEGEDLINAALRE 117 (239)
Q Consensus 68 ~~~~~v~v~i~~~~~~~vLl~~r~~~---------------------------~---~~w~~PgG~ve~gEs~~~aa~RE 117 (239)
..+..|+++++|..+++++|++.... | -..++.+|.|+..-+..+-|.||
T Consensus 227 k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e 306 (405)
T KOG4432|consen 227 KCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARE 306 (405)
T ss_pred hCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHH
Confidence 35668899999887656555442110 0 12567789999888999999999
Q ss_pred HHHHhCCcc--ceeeeccCceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeC
Q 026407 118 LREETGVTS--AEFLAETPYWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMF 195 (239)
Q Consensus 118 l~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~ 195 (239)
..||+|++. ..+......+.. -+..|..+++|.+.++... .-...+...+++|..++--++
T Consensus 307 ~veecGYdlp~~~~k~va~y~sG----------------VG~SG~~QTmfy~eVTdA~-rsgpGgg~~ee~E~IEvv~ls 369 (405)
T KOG4432|consen 307 SVEECGYDLPEDSFKLVAKYISG----------------VGQSGDTQTMFYVEVTDAR-RSGPGGGEKEEDEDIEVVRLS 369 (405)
T ss_pred HHHHhCCCCCHHHHhhhheeecc----------------cCCcCCeeEEEEEEeehhh-ccCCCCCcccccceeeEEEec
Confidence 999999987 222222211111 1335677888888887532 111222345666888999999
Q ss_pred HhHHHHhhcc
Q 026407 196 PEQVLERVRK 205 (239)
Q Consensus 196 ~eel~~~~~~ 205 (239)
++++..+..+
T Consensus 370 le~a~~~~~q 379 (405)
T KOG4432|consen 370 LEDAPSLYRQ 379 (405)
T ss_pred hhhhhHHHhc
Confidence 9999998743
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.51 E-value=0.0014 Score=51.47 Aligned_cols=114 Identities=19% Similarity=0.299 Sum_probs=63.6
Q ss_pred ceeeEEEEEEeCCCCEEEEEEecCCC------CcEEc-CceecCCCC---CHHHH----HHHHHHHHhCCccceeeeccC
Q 026407 69 YRRNVGICLINSSKKKIFAATRIHIP------YTWQM-PQGGADEGE---DLINA----ALRELREETGVTSAEFLAETP 134 (239)
Q Consensus 69 ~~~~v~v~i~~~~~~~vLl~~r~~~~------~~w~~-PgG~ve~gE---s~~~a----a~REl~EEtGl~~~~~~~~~~ 134 (239)
++.....+++-..+ +||+..|..++ +++++ -|||+..++ +..+. +.||+.||.++...+.... .
T Consensus 59 ~KQ~IpYvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~-e 136 (203)
T COG4112 59 TKQVIPYVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQEL-E 136 (203)
T ss_pred ccccccEEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhh-e
Confidence 34444334443334 89998886543 67777 599998765 33433 6699999999985222110 0
Q ss_pred ceeeecCchhhhhhcccccCCcccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHH
Q 026407 135 YWLTYDFPLKVKQKLNRRWGTNYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLE 201 (239)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~ 201 (239)
..++-+.. ..-.|....-.++...+...++.. .+.+..+++|+..++|..
T Consensus 137 ---~lGlINdd---------~neVgkVHiG~lf~~~~k~ndvev-----KEkd~~~~kwik~~ele~ 186 (203)
T COG4112 137 ---FLGLINDD---------TNEVGKVHIGALFLGRGKFNDVEV-----KEKDLFEWKWIKLEELEK 186 (203)
T ss_pred ---eeeeecCC---------CcccceEEEEEEEEeeccccceee-----eecceeeeeeeeHHHHHH
Confidence 01111100 011223333344544444333332 344778999999999997
No 98
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00017 Score=59.36 Aligned_cols=39 Identities=31% Similarity=0.448 Sum_probs=33.5
Q ss_pred EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhC
Q 026407 84 KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETG 123 (239)
Q Consensus 84 ~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtG 123 (239)
+++.++|... |.|.+|||.+|+||.+..+++||+.||.=
T Consensus 140 e~vavkr~d~-~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPDN-GEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCCC-CcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 3445777663 89999999999999999999999999974
No 99
>PRK13910 DNA glycosylase MutY; Provisional
Probab=97.18 E-value=0.0035 Score=54.67 Aligned_cols=60 Identities=8% Similarity=-0.048 Sum_probs=34.1
Q ss_pred CCCCCCCCcCCCccccccccCCCCCCCC-ceeeEEEEEEeCCCCEEEEEEecCC--CCcEEcCce
Q 026407 41 KPLCCSCDDSSSSLSSFTALSTETPPDG-YRRNVGICLINSSKKKIFAATRIHI--PYTWQMPQG 102 (239)
Q Consensus 41 ~~~~c~~~~~~~a~~~~~~~~~~~~~~~-~~~~v~v~i~~~~~~~vLl~~r~~~--~~~w~~PgG 102 (239)
.|..||+...|.+..+.........+.. .+....++++ .++ ++||.||..+ +|+|+||+.
T Consensus 156 ~C~~CPl~~~C~~~~~~~~~~~~~kk~~~~~~~~~~~~~-~~~-~~ll~kr~~~l~~gl~~fP~~ 218 (289)
T PRK13910 156 KCAICPLNPYCLGKNNPEKHTLKKKQEIVQEERYLGVVI-QNN-QIALEKIEQKLYLGMHHFPNL 218 (289)
T ss_pred CCCCCcChhhhhhhhcCCccccCCCCCCCceEEEEEEEE-ECC-EEEEEECCCchhcccccCCCC
Confidence 3344999999987664333222222222 2222333444 345 8999998531 299999963
No 100
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=96.68 E-value=0.0062 Score=52.81 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCCCCCCCCcCCCccccc--cccCCCCCCCC-ceeeEEE-EEEeCCCCEEEEEEecCCC---CcEEcCce
Q 026407 40 RKPLCCSCDDSSSSLSSF--TALSTETPPDG-YRRNVGI-CLINSSKKKIFAATRIHIP---YTWQMPQG 102 (239)
Q Consensus 40 ~~~~~c~~~~~~~a~~~~--~~~~~~~~~~~-~~~~v~v-~i~~~~~~~vLl~~r~~~~---~~w~~PgG 102 (239)
|.|..||+...|.+.... ...+...++.. ......+ ++.+.++ ++|+++|...+ |+|+||+.
T Consensus 193 P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 193 PKCDLCPLQDFCLAYQQGTWEEYPVKKPKAAPPERTTYFLVLQNYDG-EVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CCCCCCCChhhCHHHHcCCHhhcCCCCCCCCCCeEEEEEEEEEeCCC-eEEEEeCCCCchhhccccCCCC
Confidence 344449999998865532 22233322221 2223333 4445555 89999997764 99999974
No 101
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=96.38 E-value=0.016 Score=47.12 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=39.5
Q ss_pred CCceeeEE-EEEEeCCC-CEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 67 DGYRRNVG-ICLINSSK-KKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 67 ~~~~~~v~-v~i~~~~~-~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
.+.|..|. |++++..+ .+|||.+... ..|.+|||.+.+||+.++++.|.+.+-.|...
T Consensus 40 ~GmRrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 40 EGMRRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp HSSEEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred hCCceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 34566664 45555444 3788877655 59999999999999999999999999999763
No 102
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=96.14 E-value=0.0097 Score=52.66 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=44.2
Q ss_pred CCCCCCCCCcCCCccccccc--cCCCCCCC-CceeeEEEEEEeCCCCEEEEEEecCCC---CcEEcCceecCC
Q 026407 40 RKPLCCSCDDSSSSLSSFTA--LSTETPPD-GYRRNVGICLINSSKKKIFAATRIHIP---YTWQMPQGGADE 106 (239)
Q Consensus 40 ~~~~~c~~~~~~~a~~~~~~--~~~~~~~~-~~~~~v~v~i~~~~~~~vLl~~r~~~~---~~w~~PgG~ve~ 106 (239)
|.|.-||+...|.+..+... .+.+..+. ..+..++.++.+.++ +++|.+|...+ |+|+||....+.
T Consensus 202 P~C~~CPl~~~c~a~~~g~~~~~P~k~~k~~~~~~~~~~~~~~~~~-~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 202 PKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLPRRFAAFLILNRDG-EVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred CCCCcCcchHHHHHHHcCCcccCCCcCcccccchheeeEEEEccCc-chhhhhCcccCceecccccccccccc
Confidence 55555999988887664433 23222222 224456667777777 89999998765 999999987655
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=95.63 E-value=0.029 Score=48.51 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=44.4
Q ss_pred eeEEEEEEeCCCCEEEEEEecCC--------C--------------------CcEEcCceecCCCCCHHHHHHHHHHHHh
Q 026407 71 RNVGICLINSSKKKIFAATRIHI--------P--------------------YTWQMPQGGADEGEDLINAALRELREET 122 (239)
Q Consensus 71 ~~v~v~i~~~~~~~vLl~~r~~~--------~--------------------~~w~~PgG~ve~gEs~~~aa~REl~EEt 122 (239)
..|.+++++.+..++|++|.... + -..++.||.++.+-|+.+-|..|+.||+
T Consensus 27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec 106 (405)
T KOG4432|consen 27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC 106 (405)
T ss_pred cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence 36788888888777887664210 0 1257789999999999999999999999
Q ss_pred CCcc
Q 026407 123 GVTS 126 (239)
Q Consensus 123 Gl~~ 126 (239)
|+++
T Consensus 107 gy~v 110 (405)
T KOG4432|consen 107 GYRV 110 (405)
T ss_pred CCcC
Confidence 9987
No 104
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.099 Score=44.17 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=36.6
Q ss_pred EEEEEEec-CCCCcEEcCceec-CCCCCHHHHHHHHHHHHhCCcc
Q 026407 84 KIFAATRI-HIPYTWQMPQGGA-DEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 84 ~vLl~~r~-~~~~~w~~PgG~v-e~gEs~~~aa~REl~EEtGl~~ 126 (239)
-+||++|. +..+.|.||.+.+ ++++++..+|.|+|.+-.|-..
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK 184 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchh
Confidence 67777765 3348999999999 8999999999999999999654
No 105
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=94.14 E-value=0.13 Score=40.84 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=42.5
Q ss_pred CCCceeeE-EEEEEeCC-CCEEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCc
Q 026407 66 PDGYRRNV-GICLINSS-KKKIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVT 125 (239)
Q Consensus 66 ~~~~~~~v-~v~i~~~~-~~~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~ 125 (239)
+.+.|..| +++++.+. -.+|||.+-.. -.+.+|||.+++||+-.+.+.|-+-|-+|-.
T Consensus 65 k~gmRrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~ 124 (221)
T KOG1689|consen 65 KEGMRRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLGRS 124 (221)
T ss_pred hhhhhheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhccc
Confidence 44566666 44555443 24677654433 5899999999999999999999999999943
No 106
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=94.05 E-value=0.26 Score=41.62 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=63.5
Q ss_pred EEEEEEecCC----CCcE-EcCceecCCCCCHHHHHHHHHHHHhCCcc---ceeeeccCceeeecCchhhhhhcccccCC
Q 026407 84 KIFAATRIHI----PYTW-QMPQGGADEGEDLINAALRELREETGVTS---AEFLAETPYWLTYDFPLKVKQKLNRRWGT 155 (239)
Q Consensus 84 ~vLl~~r~~~----~~~w-~~PgG~ve~gEs~~~aa~REl~EEtGl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (239)
.+.+.||++. ||.| ...||++.-|-.+.++|+.|..||..++. ..+.. .+-++|-+.. +++|
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~--~G~VSy~~~e------sr~~-- 218 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVS--AGCVSYYKFE------SRQG-- 218 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhccee--cceeEEEeee------hhhc--
Confidence 4566777654 3777 45799999999999999999999999986 12222 1222222100 1111
Q ss_pred cccCceeEEEEEEEccccceecccCCCCCCCccceeEEeCHhHHHHhh
Q 026407 156 NYKGQAQKWFLFKFTGKEEEINLLGDGSEKPEFNEWRWMFPEQVLERV 203 (239)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 203 (239)
+ +...-|+|.+.-... +-. ...+.|++.+.-+++.+..+.+
T Consensus 219 -~--~pe~qYVfDL~l~~d-~iP---~~nDGEV~~F~Lltl~~~v~~l 259 (306)
T KOG4313|consen 219 -L--FPETQYVFDLELPLD-FIP---QNNDGEVQAFELLTLKDCVERL 259 (306)
T ss_pred -c--CccceEEEeccCchh-hcC---CCCCCceeeEeeecHHHHHHHH
Confidence 1 113334555543221 111 1235699999999999998866
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=68.57 E-value=5.1 Score=23.97 Aligned_cols=22 Identities=41% Similarity=0.371 Sum_probs=11.9
Q ss_pred ceecCCCCCHHHHHHHHHHHHh
Q 026407 101 QGGADEGEDLINAALRELREET 122 (239)
Q Consensus 101 gG~ve~gEs~~~aa~REl~EEt 122 (239)
||...+|--+..++.||+-||+
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 7777888888889999999996
No 108
>PF14443 DBC1: DBC1
Probab=66.24 E-value=9.6 Score=29.00 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=25.4
Q ss_pred CCcEEcC--ceecCCC-CCHHHHHHHHHHHHhCCcc
Q 026407 94 PYTWQMP--QGGADEG-EDLINAALRELREETGVTS 126 (239)
Q Consensus 94 ~~~w~~P--gG~ve~g-Es~~~aa~REl~EEtGl~~ 126 (239)
+|.|+-- ||--+.+ .++..||+|=++|-|||+.
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDL 58 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDL 58 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccch
Confidence 3777554 5555554 3789999999999999997
No 109
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=64.04 E-value=25 Score=22.92 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=12.1
Q ss_pred CcEEcCceecCCCCC
Q 026407 95 YTWQMPQGGADEGED 109 (239)
Q Consensus 95 ~~w~~PgG~ve~gEs 109 (239)
..|-+|||.+-.+-.
T Consensus 22 ~GWl~Pgg~vi~NPl 36 (60)
T PF07026_consen 22 NGWLMPGGKVITNPL 36 (60)
T ss_pred ceeecCCCeeEcCHH
Confidence 569999999987643
No 110
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=37.83 E-value=12 Score=33.28 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=36.5
Q ss_pred EEEEEEecCCCCcEEcCceecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 84 KIFAATRIHIPYTWQMPQGGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 84 ~vLl~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
-+..+-+...+..|.||.|+++.||-...++.|+-.||+|.+.
T Consensus 253 ~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 253 VVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred ceeecccccccccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 3444555555688999999999999999999999999999986
No 111
>PF14044 NETI: NETI protein
Probab=36.87 E-value=31 Score=22.39 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=17.3
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 103 GADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 103 ~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
.|+++||+.+|+.| .++| |+.+
T Consensus 3 eV~enETI~~CL~R-M~~e-GY~P 24 (57)
T PF14044_consen 3 EVEENETISDCLAR-MKKE-GYMP 24 (57)
T ss_pred eccCCCcHHHHHHH-HHHc-CCCc
Confidence 47889999999999 4444 7766
No 112
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=30.25 E-value=31 Score=30.72 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=20.7
Q ss_pred eecCCCCCHHHHHHHHHHHHhCCcc
Q 026407 102 GGADEGEDLINAALRELREETGVTS 126 (239)
Q Consensus 102 G~ve~gEs~~~aa~REl~EEtGl~~ 126 (239)
=.|+..+-..+.+.||++||++|-+
T Consensus 407 L~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 407 LGVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred hCCChhhcccHHHHHHHHHhcCcce
Confidence 3567777778899999999999865
No 113
>PF08290 Hep_core_N: Hepatitis core protein, putative zinc finger; InterPro: IPR013195 This entry represent a short region found at the N terminus of some viral capsid (HBcAg) proteins from various Hepatitis B virus (HBV), which is a major human pathogen. The conservation of four Cys residues suggests that this region acts as a zinc binding domain. Hepatitis virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005198 structural molecule activity, 0009405 pathogenesis
Probab=25.55 E-value=45 Score=18.06 Aligned_cols=10 Identities=70% Similarity=1.444 Sum_probs=8.0
Q ss_pred cceeEEEeec
Q 026407 228 ELFHFCLIFS 237 (239)
Q Consensus 228 ~~~~~~~~~~ 237 (239)
.++|+|+|++
T Consensus 2 ~lf~lcliis 11 (27)
T PF08290_consen 2 QLFHLCLIIS 11 (27)
T ss_pred ceeeeeeeee
Confidence 4789999986
No 114
>PF12860 PAS_7: PAS fold
Probab=25.49 E-value=40 Score=24.24 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=31.2
Q ss_pred eEEEEEEeCCCCEEEEEE-ecCCCCcEEcCceecCCCCCHHHHHHH
Q 026407 72 NVGICLINSSKKKIFAAT-RIHIPYTWQMPQGGADEGEDLINAALR 116 (239)
Q Consensus 72 ~v~v~i~~~~~~~vLl~~-r~~~~~~w~~PgG~ve~gEs~~~aa~R 116 (239)
..+++++|+++ ++++.- +.. .+|.+|...+..|-++.+.+.+
T Consensus 5 ~~Gv~v~D~~~-rl~~~N~~~~--~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 5 PQGVAVFDSDG-RLVFWNQRFR--ELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CceEEEEcCCC-eEEeEcHHHH--HHhCCCHHHhcCCCCHHHHHHH
Confidence 45789999988 665533 333 6899999999999887776654
No 115
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=23.97 E-value=54 Score=23.49 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=17.4
Q ss_pred EEEeeccCCccccccccccccc
Q 026407 14 RVVVSQSYPTKLVKFASVPLEL 35 (239)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (239)
.++.|+.|..|+..|.+-....
T Consensus 54 Llv~Pa~CkkCGfef~~~~ik~ 75 (97)
T COG3357 54 LLVRPARCKKCGFEFRDDKIKK 75 (97)
T ss_pred EEecChhhcccCccccccccCC
Confidence 4677889999999998755554
No 116
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=23.81 E-value=25 Score=19.26 Aligned_cols=26 Identities=23% Similarity=0.269 Sum_probs=10.6
Q ss_pred cCCccccccccccccccccCCCCCCC
Q 026407 20 SYPTKLVKFASVPLELQQLPRKPLCC 45 (239)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~c 45 (239)
+||.+.+++....-..-+++.+...|
T Consensus 1 ~CP~C~s~l~~~~~ev~~~C~N~l~C 26 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVDIRCPNPLSC 26 (28)
T ss_dssp B-TTT--BEEE-CCTTCEEE--CGC-
T ss_pred CcCCCCCEeEcCCCCEeEECCCCCcC
Confidence 47777777665555544455544333
No 117
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=21.10 E-value=83 Score=21.20 Aligned_cols=27 Identities=37% Similarity=0.384 Sum_probs=18.7
Q ss_pred cCceecCCCCCHHHHHHH--HHHHHhCCc
Q 026407 99 MPQGGADEGEDLINAALR--ELREETGVT 125 (239)
Q Consensus 99 ~PgG~ve~gEs~~~aa~R--El~EEtGl~ 125 (239)
+|...|..||+++.|+.| -.-+++|+-
T Consensus 1 M~~v~V~ene~~d~ALrrFKr~~~k~gil 29 (67)
T COG0828 1 MPQVKVRENEPLDKALRRFKRKVEKEGIL 29 (67)
T ss_pred CCeeeecCCChHHHHHHHHHHHHHHHHHH
Confidence 477889999999998874 123455643
Done!