BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026410
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/197 (59%), Positives = 154/197 (78%), Gaps = 5/197 (2%)
Query: 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
E N+NE++ +A+ LPKM YDFYA GAED+ TL EN AF RI FRPRIL+DV+ ID++
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++ TIM LS ++SS+EEVA++
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LK 210
+RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP LK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 211 NLEGLLSTKV--SSDTG 225
N EG+ K+ ++D+G
Sbjct: 182 NFEGIDLGKMDKANDSG 198
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 154/197 (78%), Gaps = 5/197 (2%)
Query: 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
E N+NE++ +A+ LPKM YD+YA GAED+ TL EN AF RI FRPRIL+DV+ ID++
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++ TIM LS ++SS+EEVA++
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LK 210
+RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP LK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 211 NLEGLLSTKV--SSDTG 225
N EG+ K+ ++D+G
Sbjct: 182 NFEGIDLGKMDKANDSG 198
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 231 bits (589), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 154/197 (78%), Gaps = 5/197 (2%)
Query: 34 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
E N+NE++ +A+ LPKM YD+YA GAED+ TL EN AF RI FRPRIL+DV+ ID++
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 94 TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++ TIM LS ++SS+EEVA++
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LK 210
+RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP LK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 211 NLEGLLSTKV--SSDTG 225
N EG+ K+ ++D+G
Sbjct: 183 NFEGIDLGKMDKANDSG 199
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 142/223 (63%), Gaps = 7/223 (3%)
Query: 12 ASGIDLLEKLINVHVCRFQ-MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKEN 70
+SG+DL + N++ FQ M + +N++++ A+ LPK YD+Y GA DE TL +N
Sbjct: 8 SSGVDLGTE--NLY---FQSMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADN 62
Query: 71 VEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAAS 130
+ AF R PR+L +V+ DLST++L ++S PI + TA+ ++A+ +GE+AT RA S
Sbjct: 63 IAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQS 122
Query: 131 CNTIMVLSFTSSSSIEEVA-ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTAD 189
T M+LS ++SSIEEVA A A+R+ QLY++K R++ LV++AE+ G+KA+ +T D
Sbjct: 123 LGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVD 182
Query: 190 TPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADA 232
TP LG R D++N+ PP ++ ++ +S NF D+
Sbjct: 183 TPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS 225
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 1/209 (0%)
Query: 25 HVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRIL 84
+ R M + +N++++ A+ LPK YD+Y GA DE TL +N+ AF R PR+L
Sbjct: 12 QMGRGSMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRML 71
Query: 85 VDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSS 144
+V+ DLST++L ++S PI + TA+ ++A+ +GE+AT RA S T M+LS ++SS
Sbjct: 72 RNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSS 131
Query: 145 IEEVA-ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNK 203
IEEVA A A+R+ QLY++K R++ LV++AE+ G+KA+ +T DTP LG R D++N+
Sbjct: 132 IEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNR 191
Query: 204 MITPPLKNLEGLLSTKVSSDTGSNFEADA 232
PP ++ ++ +S NF D+
Sbjct: 192 FKLPPQLRMKNFETSTLSFSPEENFGDDS 220
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 129/198 (65%), Gaps = 1/198 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+ +N++++ A+ LPK YD+Y GA DE TL +N+ AF R PR+L +V+ DLST+
Sbjct: 6 ICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTS 65
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVA-ASCNA 154
+L ++S PI + TA+ ++A+ +GE+AT RA S T M+LS ++SSIEEVA A A
Sbjct: 66 VLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEA 125
Query: 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEG 214
+R+ QLY++K R++ LV++AE+ G+KA+ +T DTP LG R D++N+ PP ++
Sbjct: 126 LRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKN 185
Query: 215 LLSTKVSSDTGSNFEADA 232
++ +S NF D+
Sbjct: 186 FETSTLSFSPEENFGDDS 203
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
V L +F+ A+ L K +DF G A+D T EN+ AF RI RPR L D+S++D TT
Sbjct: 3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTT 62
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE-VAASCNA 154
I +ISAPI I+PTA H +A P+GE +TARAA N V+S +S S+E+ VAA+
Sbjct: 63 IQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEG 122
Query: 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
R++QLY+ D +VQRAE GFKALV+T DTP LG R D +N++
Sbjct: 123 FRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQL 172
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 4/188 (2%)
Query: 31 MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRI 90
M+ N+ ++++LA+ LPKM YD+ GGAEDE+ +K N + F + F+P+ LVDVSR
Sbjct: 1 MSQNLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRR 60
Query: 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150
L +L + S P++I PTAL+ P+G++A ARAA VLS S+ SIE++A
Sbjct: 61 SLQAEVLGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLAR 120
Query: 151 SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP-- 208
C+ ++QLYV R+IA +V +A G+ LVLT D G RE D+ N+ PP
Sbjct: 121 QCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFL 179
Query: 209 -LKNLEGL 215
LKN EG+
Sbjct: 180 TLKNFEGI 187
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
V L +F+ A+ L K +DF G A+D T EN+ AF RI RPR L D+S++D TT
Sbjct: 3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTT 62
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEE-VAASCNA 154
I +ISAPI I+PTA H +A P+GE +TARAA N V+S +S S+E+ VAA+
Sbjct: 63 IQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEG 122
Query: 155 VRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
R++QLY+ D +VQRAE GFKALV+T DTP LG R D +N++
Sbjct: 123 FRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQL 172
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 113/188 (60%), Gaps = 4/188 (2%)
Query: 31 MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRI 90
M+ N+ ++++LA+ LPKM YD+ GGAEDE+ +K N + F + F+P+ LVDVSR
Sbjct: 1 MSQNLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRR 60
Query: 91 DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150
L +L + S P++I PT L+ P+G++A ARAA VLS S+ SIE++A
Sbjct: 61 SLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLAR 120
Query: 151 SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP-- 208
C+ ++QLYV R+IA +V +A G+ LVLT D G RE D+ N+ PP
Sbjct: 121 QCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFL 179
Query: 209 -LKNLEGL 215
LKN EG+
Sbjct: 180 TLKNFEGI 187
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + FY+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAFYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 297
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 297
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 118 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 177
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 178 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 237
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 238 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 292
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 24 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 83
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 84 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 143
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 144 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 198
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 297
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 22 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 81
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTSSSSIEEVA 149
+L + P ++ TAL KL NP EGE AR T I L+ S I E A
Sbjct: 82 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 141
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
S +++YQLYV R I LV+ E+ G KAL +T D P LG++E D+K K
Sbjct: 142 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLKF 196
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 105/175 (60%), Gaps = 6/175 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNTIM--VLSFTSSSSIEEV---A 149
+L + P ++ TAL KL NP EGE AR T + ++S +S S EE+ A
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 297
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
+NL +F+ LA L K + +Y+ GA DE T +EN A+HRI F+P+ILVDV ++D+ST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 96 ILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNTIM--VLSFTSSSSIEEV---A 149
+L + P ++ T L KL NP EGE AR T + ++S +S S EE+ A
Sbjct: 183 MLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 150 ASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKM 204
S +++YQLYV R I LV+ E+ G KAL +T D P LG+RE D+K K
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 297
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 1/173 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
VN + +E A +P +++ AG + DE T + N A+ PR+ DV D ST
Sbjct: 20 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 79
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155
IL +KI AP I+AP A H LA+ E TARA + TIM +S S ++ EE++ N
Sbjct: 80 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 139
Query: 156 -RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP 207
R++Q+Y+ K ++ A+ +G A++LTAD+ G R+ D+KNK + P
Sbjct: 140 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 192
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 1/173 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
VN + +E A +P +++ AG + DE T + N A+ PR+ DV D ST
Sbjct: 14 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 73
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155
IL +KI AP I+AP A H LA+ E TARA + TIM +S S ++ EE++ N
Sbjct: 74 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 133
Query: 156 -RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP 207
R++Q+Y+ K ++ A+ +G A++LTAD+ G R+ D+KNK + P
Sbjct: 134 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 186
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 1/173 (0%)
Query: 36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
VN + +E A +P +++ AG + DE T + N A+ PR+ DV D ST
Sbjct: 20 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 79
Query: 96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155
IL +KI AP I+AP A H LA+ E TARA + TIM +S S ++ EE++ N
Sbjct: 80 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 139
Query: 156 -RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP 207
R++Q+Y+ K ++ A+ +G A++LTAD+ G R+ D+KNK + P
Sbjct: 140 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 192
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 78/95 (82%)
Query: 93 STTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASC 152
+TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++ TIM LS ++SS+EEVA++
Sbjct: 1 TTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 60
Query: 153 NAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLT 187
+RF+QLYV+K R++ A LV+RAER GFKA+ LT
Sbjct: 61 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 95
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 120 GEVATARAAASCNTIMVLSFTSSSSIE-----------EVAASCNAVRFYQLYVFKKRDI 168
G+V A + N ++VLSF S SIE E+ C+ R + + R +
Sbjct: 61 GDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSV 120
Query: 169 AATLVQRAE 177
A TL Q+ E
Sbjct: 121 ADTLRQKVE 129
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 120 GEVATARAAASCNTIMVLSFTSSSSIE-----------EVAASCNAVRFYQLYVFKKRDI 168
G+V A + N ++VLSF S SIE E+ C+ R + + R +
Sbjct: 61 GDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSV 120
Query: 169 AATLVQRAE 177
A TL Q+ E
Sbjct: 121 ADTLRQKVE 129
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 163 FKKRDIAATLVQRAERNGFKALVLTAD 189
++ D+ A+L ++AE+ G++ +LTAD
Sbjct: 116 YEADDVLASLAKKAEKEGYEVRILTAD 142
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 163 FKKRDIAATLVQRAERNGFKALVLTAD 189
++ D+ A+L ++AE+ G++ +LTAD
Sbjct: 116 YEADDVLASLAKKAEKEGYEVRILTAD 142
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 179 NGFKALVLTADTPRL---GRREADIKNKMITPP 208
G K + T D PR G EAD+K+ + PP
Sbjct: 408 QGAKVRLATIDRPRFTQWGETEADVKDGFVVPP 440
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,238,990
Number of Sequences: 62578
Number of extensions: 223606
Number of successful extensions: 533
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 30
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)